Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02451.t1 | XP_024629356.1 | 91.6 | 736 | 42 | 1 | 1 | 716 | 1 | 736 | 0.00E+00 | 1364.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02451.t1 | Q9SZL8 | 31.2 | 574 | 366 | 7 | 7 | 554 | 70 | 640 | 3.5e-84 | 314.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02451.t1 | A0A396JHA3 | 92.1 | 593 | 27 | 1 | 1 | 573 | 1 | 593 | 0.0e+00 | 1114.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene02451.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02451.t1 | MTR_5g039760 | 66.019 | 206 | 45 | 2 | 1 | 205 | 1 | 182 | 3.48e-89 | 277 |
| MS.gene02451.t1 | MTR_7g074790 | 65.169 | 178 | 44 | 1 | 1 | 178 | 1 | 160 | 6.22e-75 | 241 |
| MS.gene02451.t1 | MTR_7g061980 | 84.874 | 119 | 18 | 0 | 1 | 119 | 1 | 119 | 1.56e-64 | 210 |
| MS.gene02451.t1 | MTR_0402s0040 | 44.199 | 181 | 96 | 4 | 10 | 187 | 26 | 204 | 1.43e-34 | 138 |
| MS.gene02451.t1 | MTR_0558s0020 | 29.961 | 257 | 157 | 5 | 3 | 239 | 32 | 285 | 5.93e-31 | 123 |
| MS.gene02451.t1 | MTR_6g051425 | 30.824 | 279 | 161 | 6 | 9 | 257 | 13 | 289 | 1.60e-30 | 123 |
| MS.gene02451.t1 | MTR_3g058090 | 46.825 | 126 | 43 | 2 | 523 | 648 | 5 | 106 | 4.13e-27 | 106 |
| MS.gene02451.t1 | MTR_4g102720 | 33.333 | 171 | 80 | 2 | 5 | 175 | 2 | 138 | 6.45e-25 | 103 |
| MS.gene02451.t1 | MTR_4g069880 | 70.588 | 68 | 20 | 0 | 1 | 68 | 1 | 68 | 3.07e-24 | 96.7 |
| MS.gene02451.t1 | MTR_8g446020 | 29.707 | 239 | 142 | 6 | 3 | 239 | 31 | 245 | 3.71e-24 | 102 |
| MS.gene02451.t1 | MTR_1g083640 | 26.337 | 243 | 156 | 5 | 3 | 225 | 47 | 286 | 5.12e-22 | 97.4 |
| MS.gene02451.t1 | MTR_6g090505 | 28.112 | 249 | 161 | 5 | 42 | 275 | 9 | 254 | 5.99e-22 | 98.6 |
| MS.gene02451.t1 | MTR_1g070355 | 26.754 | 228 | 160 | 3 | 16 | 239 | 80 | 304 | 9.56e-20 | 94.0 |
| MS.gene02451.t1 | MTR_5g015480 | 43.902 | 123 | 65 | 3 | 10 | 129 | 56 | 177 | 6.71e-18 | 84.7 |
| MS.gene02451.t1 | MTR_2g070590 | 43.396 | 106 | 56 | 3 | 10 | 112 | 17 | 121 | 3.02e-16 | 75.9 |
| MS.gene02451.t1 | MTR_5g076070 | 24.454 | 229 | 168 | 3 | 13 | 238 | 56 | 282 | 3.31e-16 | 80.1 |
| MS.gene02451.t1 | MTR_2g099430 | 47.727 | 88 | 44 | 2 | 33 | 119 | 26 | 112 | 5.53e-16 | 75.1 |
| MS.gene02451.t1 | MTR_7g446510 | 28.824 | 170 | 121 | 0 | 69 | 238 | 140 | 309 | 1.23e-15 | 79.3 |
| MS.gene02451.t1 | MTR_7g446520 | 25.893 | 224 | 151 | 1 | 16 | 239 | 94 | 302 | 5.16e-15 | 77.4 |
| MS.gene02451.t1 | MTR_6g017200 | 44.792 | 96 | 49 | 3 | 10 | 102 | 58 | 152 | 1.07e-14 | 72.4 |
| MS.gene02451.t1 | MTR_7g113010 | 40.157 | 127 | 60 | 3 | 10 | 134 | 457 | 569 | 1.90e-14 | 77.4 |
| MS.gene02451.t1 | MTR_1g013060 | 26.728 | 217 | 152 | 4 | 1 | 211 | 15 | 230 | 2.35e-14 | 73.6 |
| MS.gene02451.t1 | MTR_6g022070 | 28.571 | 175 | 118 | 4 | 284 | 457 | 1 | 169 | 3.16e-14 | 75.1 |
| MS.gene02451.t1 | MTR_7g446480 | 30.263 | 152 | 106 | 0 | 87 | 238 | 143 | 294 | 3.38e-14 | 74.7 |
| MS.gene02451.t1 | MTR_1g019850 | 32.624 | 141 | 86 | 3 | 3 | 141 | 63 | 196 | 8.63e-14 | 72.0 |
| MS.gene02451.t1 | MTR_5g045210 | 32.203 | 118 | 73 | 2 | 525 | 636 | 20 | 136 | 1.75e-13 | 70.1 |
| MS.gene02451.t1 | MTR_4g117620 | 84.848 | 33 | 5 | 0 | 672 | 704 | 35 | 67 | 2.34e-13 | 66.2 |
| MS.gene02451.t1 | MTR_4g035820 | 26.556 | 241 | 166 | 6 | 10 | 242 | 75 | 312 | 6.16e-13 | 72.8 |
| MS.gene02451.t1 | MTR_0337s0040 | 27.083 | 144 | 103 | 1 | 76 | 217 | 81 | 224 | 6.94e-13 | 69.3 |
| MS.gene02451.t1 | MTR_1g086270 | 28.125 | 128 | 73 | 2 | 284 | 411 | 1 | 109 | 8.13e-13 | 65.9 |
| MS.gene02451.t1 | MTR_2g014100 | 24.880 | 209 | 134 | 5 | 3 | 191 | 40 | 245 | 9.78e-12 | 66.2 |
| MS.gene02451.t1 | MTR_1g008290 | 30.000 | 130 | 88 | 2 | 77 | 206 | 18 | 144 | 9.66e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02451.t1 | AT4G38180 | 31.707 | 574 | 363 | 9 | 7 | 554 | 70 | 640 | 6.08e-94 | 309 |
| MS.gene02451.t1 | AT4G15090 | 27.124 | 612 | 415 | 8 | 3 | 591 | 44 | 647 | 4.00e-85 | 286 |
| MS.gene02451.t1 | AT4G15090 | 27.124 | 612 | 415 | 8 | 3 | 591 | 44 | 647 | 4.00e-85 | 286 |
| MS.gene02451.t1 | AT4G15090 | 27.124 | 612 | 415 | 8 | 3 | 591 | 44 | 647 | 4.00e-85 | 286 |
| MS.gene02451.t1 | AT4G15090 | 27.124 | 612 | 415 | 8 | 3 | 591 | 44 | 647 | 4.00e-85 | 286 |
| MS.gene02451.t1 | AT4G15090 | 27.124 | 612 | 415 | 8 | 3 | 591 | 44 | 647 | 4.00e-85 | 286 |
| MS.gene02451.t1 | AT1G76320 | 29.768 | 561 | 351 | 11 | 14 | 548 | 1 | 544 | 6.62e-75 | 255 |
| MS.gene02451.t1 | AT1G76320 | 29.590 | 561 | 352 | 11 | 14 | 548 | 1 | 544 | 1.93e-74 | 255 |
| MS.gene02451.t1 | AT1G76320 | 29.590 | 561 | 352 | 11 | 14 | 548 | 1 | 544 | 2.36e-74 | 255 |
| MS.gene02451.t1 | AT1G76320 | 29.590 | 561 | 352 | 11 | 14 | 548 | 1 | 544 | 2.36e-74 | 255 |
| MS.gene02451.t1 | AT3G22170 | 27.564 | 624 | 374 | 13 | 9 | 591 | 69 | 655 | 3.18e-71 | 248 |
| MS.gene02451.t1 | AT3G22170 | 27.564 | 624 | 374 | 13 | 9 | 591 | 69 | 655 | 3.18e-71 | 248 |
| MS.gene02451.t1 | AT3G06250 | 26.446 | 605 | 373 | 11 | 9 | 589 | 189 | 745 | 2.14e-69 | 242 |
| MS.gene02451.t1 | AT3G06250 | 36.111 | 108 | 53 | 3 | 5 | 110 | 23 | 116 | 1.71e-11 | 68.2 |
| MS.gene02451.t1 | AT3G06250 | 26.446 | 605 | 373 | 11 | 9 | 589 | 189 | 745 | 2.14e-69 | 242 |
| MS.gene02451.t1 | AT3G06250 | 36.111 | 108 | 53 | 3 | 5 | 110 | 23 | 116 | 1.71e-11 | 68.2 |
| MS.gene02451.t1 | AT3G06250 | 26.446 | 605 | 373 | 11 | 9 | 589 | 189 | 745 | 2.14e-69 | 242 |
| MS.gene02451.t1 | AT3G06250 | 36.111 | 108 | 53 | 3 | 5 | 110 | 23 | 116 | 1.71e-11 | 68.2 |
| MS.gene02451.t1 | AT5G18960 | 26.359 | 607 | 374 | 13 | 9 | 589 | 210 | 769 | 1.07e-65 | 232 |
| MS.gene02451.t1 | AT5G18960 | 36.842 | 114 | 52 | 4 | 9 | 116 | 42 | 141 | 5.83e-12 | 69.7 |
| MS.gene02451.t1 | AT5G18960 | 26.359 | 607 | 374 | 13 | 9 | 589 | 210 | 769 | 1.07e-65 | 232 |
| MS.gene02451.t1 | AT5G18960 | 36.842 | 114 | 52 | 4 | 9 | 116 | 42 | 141 | 5.83e-12 | 69.7 |
| MS.gene02451.t1 | AT2G27110 | 26.858 | 592 | 378 | 12 | 9 | 576 | 48 | 608 | 3.28e-59 | 215 |
| MS.gene02451.t1 | AT2G27110 | 26.858 | 592 | 378 | 12 | 9 | 576 | 48 | 608 | 3.28e-59 | 215 |
| MS.gene02451.t1 | AT4G19990 | 25.554 | 587 | 363 | 9 | 13 | 562 | 24 | 573 | 6.05e-56 | 204 |
| MS.gene02451.t1 | AT4G19990 | 25.554 | 587 | 363 | 9 | 13 | 562 | 24 | 573 | 6.05e-56 | 204 |
| MS.gene02451.t1 | AT4G19990 | 25.554 | 587 | 363 | 9 | 13 | 562 | 24 | 573 | 6.10e-56 | 204 |
| MS.gene02451.t1 | AT4G19990 | 25.554 | 587 | 363 | 9 | 13 | 562 | 24 | 573 | 6.10e-56 | 204 |
| MS.gene02451.t1 | AT4G19990 | 25.554 | 587 | 363 | 9 | 13 | 562 | 24 | 573 | 6.33e-56 | 204 |
| MS.gene02451.t1 | AT4G19990 | 25.554 | 587 | 363 | 9 | 13 | 562 | 38 | 587 | 9.25e-56 | 204 |
| MS.gene02451.t1 | AT2G32250 | 25.348 | 647 | 384 | 15 | 13 | 626 | 41 | 621 | 8.50e-53 | 195 |
| MS.gene02451.t1 | AT2G32250 | 25.348 | 647 | 384 | 15 | 13 | 626 | 41 | 621 | 1.62e-52 | 195 |
| MS.gene02451.t1 | AT2G32250 | 25.348 | 647 | 384 | 15 | 13 | 626 | 41 | 621 | 1.62e-52 | 195 |
| MS.gene02451.t1 | AT2G32250 | 25.348 | 647 | 384 | 15 | 13 | 626 | 41 | 621 | 1.76e-52 | 195 |
| MS.gene02451.t1 | AT2G32250 | 25.348 | 647 | 384 | 15 | 13 | 626 | 41 | 621 | 1.76e-52 | 195 |
| MS.gene02451.t1 | AT2G32250 | 25.348 | 647 | 384 | 15 | 13 | 626 | 41 | 621 | 1.76e-52 | 195 |
| MS.gene02451.t1 | AT4G19990 | 26.265 | 514 | 318 | 7 | 73 | 562 | 40 | 516 | 4.10e-52 | 192 |
| MS.gene02451.t1 | AT4G38170 | 27.494 | 451 | 276 | 10 | 190 | 607 | 24 | 456 | 4.86e-52 | 189 |
| MS.gene02451.t1 | AT2G32250 | 25.232 | 646 | 384 | 15 | 14 | 626 | 1 | 580 | 6.72e-52 | 193 |
| MS.gene02451.t1 | AT2G32250 | 25.232 | 646 | 384 | 15 | 14 | 626 | 1 | 580 | 7.26e-52 | 193 |
| MS.gene02451.t1 | AT1G52520 | 25.739 | 575 | 370 | 15 | 10 | 548 | 85 | 638 | 5.87e-51 | 189 |
| MS.gene02451.t1 | AT2G27110 | 28.155 | 412 | 271 | 6 | 187 | 576 | 55 | 463 | 1.67e-50 | 188 |
| MS.gene02451.t1 | AT1G10240 | 25.044 | 571 | 379 | 14 | 10 | 545 | 48 | 604 | 2.41e-45 | 173 |
| MS.gene02451.t1 | AT1G10240 | 25.044 | 571 | 379 | 14 | 10 | 545 | 48 | 604 | 2.41e-45 | 173 |
| MS.gene02451.t1 | AT1G80010 | 24.242 | 594 | 394 | 13 | 10 | 561 | 95 | 674 | 2.09e-44 | 171 |
| MS.gene02451.t1 | AT5G28530 | 22.112 | 606 | 406 | 11 | 5 | 563 | 50 | 636 | 2.15e-40 | 158 |
| MS.gene02451.t1 | AT5G28530 | 22.277 | 606 | 401 | 12 | 5 | 563 | 50 | 632 | 2.05e-39 | 155 |
| MS.gene02451.t1 | AT5G28530 | 22.277 | 606 | 401 | 12 | 5 | 563 | 50 | 632 | 2.05e-39 | 155 |
| MS.gene02451.t1 | AT5G28530 | 21.815 | 573 | 385 | 11 | 5 | 563 | 50 | 573 | 3.97e-34 | 139 |
| MS.gene02451.t1 | AT5G28530 | 21.990 | 573 | 380 | 12 | 5 | 563 | 50 | 569 | 3.90e-33 | 135 |
Find 119 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAGAGGTTCGGTCATATT+TGG | 0.158604 | 5.3:+11771651 | MS.gene02451:intron |
| ACATCTGAACTCACAATTTC+TGG | 0.208418 | 5.3:-11772812 | None:intergenic |
| TGGAAGAGGCTAGTAAATTT+TGG | 0.221773 | 5.3:+11770934 | MS.gene02451:CDS |
| CAAAATGGTTGAAGAATTCT+AGG | 0.231129 | 5.3:-11772151 | None:intergenic |
| TCAAATCCCATTCCAATCTT+TGG | 0.252212 | 5.3:-11770906 | None:intergenic |
| CCTCAACAACTATTTCAAAA+TGG | 0.253372 | 5.3:-11772166 | None:intergenic |
| GTGTGATGCACAGATGATTT+TGG | 0.260666 | 5.3:+11771532 | MS.gene02451:CDS |
| CCCTTGCCATTGCTTGATCT+TGG | 0.267996 | 5.3:-11771776 | None:intergenic |
| TGTAGGAAGTTTGATACTTT+TGG | 0.276531 | 5.3:+11772464 | MS.gene02451:CDS |
| GTTGTTTGATACATTCTTAC+AGG | 0.280157 | 5.3:+11771716 | MS.gene02451:CDS |
| TCGCTTAATTCTCTTTGAAC+TGG | 0.286047 | 5.3:-11772864 | None:intergenic |
| TTAATATTCATGACAAATCT+TGG | 0.288875 | 5.3:+11771988 | MS.gene02451:CDS |
| ATAGAGGTTCGGTCATATTT+GGG | 0.296417 | 5.3:+11771652 | MS.gene02451:intron |
| TTATGCAAGCAAAGGGGTTC+AGG | 0.309393 | 5.3:+11772834 | MS.gene02451:CDS |
| ACATGGCATTTGTTACAAAA+TGG | 0.322826 | 5.3:+11771840 | MS.gene02451:CDS |
| TGGCTAATGACTCTGGATTA+AGG | 0.326845 | 5.3:+11771282 | MS.gene02451:CDS |
| TTGTTATTAATGTAGGCAAT+AGG | 0.329157 | 5.3:+11773368 | MS.gene02451:intron |
| TGGAATGGGATTTGATTCTA+TGG | 0.332757 | 5.3:+11770914 | MS.gene02451:CDS |
| AACATATTACAAATGTGTTT+TGG | 0.337041 | 5.3:+11771510 | MS.gene02451:CDS |
| TGCATTCATTCCATCGAAAT+AGG | 0.344885 | 5.3:-11773399 | None:intergenic |
| TGGCTCAAGTTTCTTGATAA+TGG | 0.349009 | 5.3:+11772713 | MS.gene02451:CDS |
| ATTCGATTTCTAGACAAGTT+AGG | 0.350154 | 5.3:-11772629 | None:intergenic |
| CAAAATGGAGTTAAACATCT+TGG | 0.359049 | 5.3:+11771855 | MS.gene02451:CDS |
| ATTCCATCACTTGTAGTTGT+AGG | 0.360190 | 5.3:+11772447 | MS.gene02451:CDS |
| TGTTATTAATGTAGGCAATA+GGG | 0.361419 | 5.3:+11773369 | MS.gene02451:intron |
| TGTCATGAATATTAAATTTG+TGG | 0.368037 | 5.3:-11771980 | None:intergenic |
| GAGTCAGATTCATGTCTAAT+TGG | 0.376263 | 5.3:-11772353 | None:intergenic |
| AACTTGAGCCATTCTTCCTT+GGG | 0.383639 | 5.3:-11772701 | None:intergenic |
| AAACTTGAGCCATTCTTCCT+TGG | 0.386061 | 5.3:-11772702 | None:intergenic |
| TTTAGGGGAAGGGAGGTTGA+AGG | 0.387913 | 5.3:+11772602 | MS.gene02451:CDS |
| CGCTTAATTCTCTTTGAACT+GGG | 0.389522 | 5.3:-11772863 | None:intergenic |
| TCTCTGAAATTTGTAGATCA+TGG | 0.390016 | 5.3:-11771199 | None:intergenic |
| ATCTTGCACAACGCCATAAC+GGG | 0.394237 | 5.3:-11772579 | None:intergenic |
| ATGTCGATTGGTTTGTTGTA+AGG | 0.397901 | 5.3:+11771034 | MS.gene02451:CDS |
| TGCACCAATACTAATCCAAA+TGG | 0.399541 | 5.3:+11772259 | MS.gene02451:CDS |
| GCAAGCATATGAGATTGATT+TGG | 0.403796 | 5.3:+11771262 | MS.gene02451:CDS |
| TATAGTTTCCGTATGGGCTT+CGG | 0.405685 | 5.3:+11770963 | MS.gene02451:CDS |
| TGGTCAGTGAAGATCGTCTT+TGG | 0.409022 | 5.3:-11771756 | None:intergenic |
| ATGGACAATAACGGTGATAA+TGG | 0.410451 | 5.3:+11772782 | MS.gene02451:CDS |
| ATTACACTTTCTCGTAAGAA+TGG | 0.418220 | 5.3:+11771140 | MS.gene02451:CDS |
| TTTCCCATTTGGATTAGTAT+TGG | 0.423123 | 5.3:-11772263 | None:intergenic |
| ATTGATTTGGCTAATGACTC+TGG | 0.429637 | 5.3:+11771275 | MS.gene02451:CDS |
| CTTGATCCTCATGTACTTGT+GGG | 0.429692 | 5.3:-11773252 | None:intergenic |
| GTTTGAATTGAATGATGTTA+AGG | 0.437617 | 5.3:+11772514 | MS.gene02451:CDS |
| AAAATGGAGTTAAACATCTT+GGG | 0.438747 | 5.3:+11771856 | MS.gene02451:CDS |
| TGGCATCTTCAGATGATGAT+TGG | 0.443033 | 5.3:+11770880 | MS.gene02451:CDS |
| GATGATTGGAAACCAAAGAT+TGG | 0.443445 | 5.3:+11770894 | MS.gene02451:CDS |
| TGGAAACCAAAGATTGGAAT+GGG | 0.444346 | 5.3:+11770900 | MS.gene02451:CDS |
| CTCTAACTCCGAAGCCCATA+CGG | 0.445217 | 5.3:-11770971 | None:intergenic |
| GCTTGCTTATAGTTTCCGTA+TGG | 0.448607 | 5.3:+11770956 | MS.gene02451:CDS |
| AGGCAAAACATGAAGGATCT+TGG | 0.451476 | 5.3:+11772399 | MS.gene02451:CDS |
| TTCTCGTAAGAATGGAAAGT+TGG | 0.454285 | 5.3:+11771148 | MS.gene02451:CDS |
| TTTCAACCATTATAGAGGTT+CGG | 0.463282 | 5.3:+11771641 | MS.gene02451:intron |
| TAAGCGATACAAAAGTTGTC+TGG | 0.469438 | 5.3:+11772880 | MS.gene02451:CDS |
| AGACAAGTGAGTCATTTAGA+TGG | 0.469670 | 5.3:+11771694 | MS.gene02451:CDS |
| TATGTTTGTCTTCAAAGTCA+TGG | 0.470632 | 5.3:-11771175 | None:intergenic |
| AGAACTTCGCGCACAAGCTA+TGG | 0.479950 | 5.3:+11772763 | MS.gene02451:CDS |
| TCAGATGTTATGCAAGCAAA+GGG | 0.481579 | 5.3:+11772827 | MS.gene02451:CDS |
| CAGAGACAACACACATGCTT+CGG | 0.486204 | 5.3:+11771216 | MS.gene02451:CDS |
| AGTATGGCGTATGGTGAGAT+TGG | 0.487788 | 5.3:+11771410 | MS.gene02451:CDS |
| CAATTACACAGCCATGCTAA+TGG | 0.488206 | 5.3:+11773276 | MS.gene02451:CDS |
| ACTTGATCCTCATGTACTTG+TGG | 0.494055 | 5.3:-11773253 | None:intergenic |
| GGGATTTGATTCTATGGAAG+AGG | 0.495105 | 5.3:+11770920 | MS.gene02451:CDS |
| ATGGGCTGCATGTTATATGA+AGG | 0.495383 | 5.3:+11772040 | MS.gene02451:CDS |
| TGGACAAGAGAAGCCCGTTA+TGG | 0.496786 | 5.3:+11772566 | MS.gene02451:CDS |
| AATCTTGCACAACGCCATAA+CGG | 0.497648 | 5.3:-11772580 | None:intergenic |
| GAGAAAAGATATGCATATGA+AGG | 0.500242 | 5.3:+11771074 | MS.gene02451:CDS |
| AAGCATCACCCAAGGAAGAA+TGG | 0.505676 | 5.3:+11772693 | MS.gene02451:CDS |
| CTTCTTTCATGCATATCAGA+TGG | 0.507409 | 5.3:+11771478 | MS.gene02451:CDS |
| GTTATTAATGTAGGCAATAG+GGG | 0.508889 | 5.3:+11773370 | MS.gene02451:intron |
| CTTGCTTATAGTTTCCGTAT+GGG | 0.515014 | 5.3:+11770957 | MS.gene02451:CDS |
| AATTCTAGGATATTCACATT+CGG | 0.515042 | 5.3:-11772137 | None:intergenic |
| CATAAACCATGATGAGTCTC+GGG | 0.518603 | 5.3:-11771816 | None:intergenic |
| CGATTGGTTTGTTGTAAGGA+AGG | 0.518965 | 5.3:+11771038 | MS.gene02451:CDS |
| TTCATTCCATCGAAATAGGC+TGG | 0.520474 | 5.3:-11773395 | None:intergenic |
| CTTCCTACAACTACAAGTGA+TGG | 0.523835 | 5.3:-11772450 | None:intergenic |
| GTTGTAAGGAAGGACTAAAG+AGG | 0.526492 | 5.3:+11771048 | MS.gene02451:CDS |
| GCACCAATACTAATCCAAAT+GGG | 0.528421 | 5.3:+11772260 | MS.gene02451:CDS |
| CTCATCATGGTTTATGCACA+TGG | 0.528564 | 5.3:+11771823 | MS.gene02451:CDS |
| TATGCAAGCAAAGGGGTTCA+GGG | 0.531086 | 5.3:+11772835 | MS.gene02451:CDS |
| TTGGAAACCAAAGATTGGAA+TGG | 0.532585 | 5.3:+11770899 | MS.gene02451:CDS |
| TAAGGAAGGACTAAAGAGGA+AGG | 0.536379 | 5.3:+11771052 | MS.gene02451:CDS |
| CATCTGATATGCATGAAAGA+AGG | 0.541375 | 5.3:-11771477 | None:intergenic |
| GCATAAACCATGATGAGTCT+CGG | 0.547827 | 5.3:-11771817 | None:intergenic |
| ATGAAGGGAGCGTTAACACT+TGG | 0.548419 | 5.3:+11772056 | MS.gene02451:CDS |
| AATCCTCACATAAGCTTGCA+AGG | 0.553450 | 5.3:+11772222 | MS.gene02451:CDS |
| TAGTGTATCGTCATGTCGAT+TGG | 0.553968 | 5.3:+11771022 | MS.gene02451:CDS |
| ACCAAGATCAAGCAATGGCA+AGG | 0.557252 | 5.3:+11771775 | MS.gene02451:CDS |
| GAGAAAGTGTAATTCTTGCA+AGG | 0.558104 | 5.3:-11771130 | None:intergenic |
| TCGATGGAATGAATGCATAG+AGG | 0.559886 | 5.3:+11773405 | MS.gene02451:CDS |
| TTCAGATGTTATGCAAGCAA+AGG | 0.563515 | 5.3:+11772826 | MS.gene02451:CDS |
| TGTCTCTAAGTTCATTAAAG+CGG | 0.564647 | 5.3:+11772664 | MS.gene02451:CDS |
| TTATTAATGTAGGCAATAGG+GGG | 0.573008 | 5.3:+11773371 | MS.gene02451:intron |
| ATCACTGAGGCAAAACATGA+AGG | 0.573756 | 5.3:+11772392 | MS.gene02451:CDS |
| GCAGGGCATAGAGCTAATGT+TGG | 0.587433 | 5.3:+11771338 | MS.gene02451:CDS |
| TTGATCCTCATGTACTTGTG+GGG | 0.588928 | 5.3:-11773251 | None:intergenic |
| CATCTTGGGAACTTGATGAC+GGG | 0.592368 | 5.3:+11771870 | MS.gene02451:CDS |
| ACATCTTGGGAACTTGATGA+CGG | 0.592717 | 5.3:+11771869 | MS.gene02451:CDS |
| TGATATGCATGAAAGAAGGA+TGG | 0.595909 | 5.3:-11771473 | None:intergenic |
| AAGGCAATTTGTTCTAACAT+CGG | 0.596957 | 5.3:-11771111 | None:intergenic |
| AATAACGGTGATAATGGTGC+TGG | 0.599785 | 5.3:+11772788 | MS.gene02451:CDS |
| TGATCCTCATGTACTTGTGG+GGG | 0.607203 | 5.3:-11773250 | None:intergenic |
| TAGAGGTTCGGTCATATTTG+GGG | 0.610780 | 5.3:+11771653 | MS.gene02451:intron |
| TGGGCTGCATGTTATATGAA+GGG | 0.616662 | 5.3:+11772041 | MS.gene02451:CDS |
| GTGATGCCCGAGACTCATCA+TGG | 0.618218 | 5.3:+11771810 | MS.gene02451:CDS |
| AGGTTCGGTCATATTTGGGG+CGG | 0.621342 | 5.3:+11771656 | MS.gene02451:CDS |
| GCACAAGCTATGGACAATAA+CGG | 0.625593 | 5.3:+11772773 | MS.gene02451:CDS |
| CACTGACCAAGATCAAGCAA+TGG | 0.631892 | 5.3:+11771770 | MS.gene02451:CDS |
| GGCAACTGAAGCATCACCCA+AGG | 0.632035 | 5.3:+11772685 | MS.gene02451:CDS |
| AGCTAATGTTGGATTTACAG+AGG | 0.647899 | 5.3:+11771349 | MS.gene02451:CDS |
| TAACCTTGCAAGCTTATGTG+AGG | 0.649097 | 5.3:-11772225 | None:intergenic |
| CTTGGGAACTTGATGACGGG+AGG | 0.649703 | 5.3:+11771873 | MS.gene02451:CDS |
| CCAAGATCAAGCAATGGCAA+GGG | 0.649905 | 5.3:+11771776 | MS.gene02451:CDS |
| TAATGTTGGATTTACAGAGG+TGG | 0.664199 | 5.3:+11771352 | MS.gene02451:CDS |
| GAGCGCGGCTAGATGTAGCG+CGG | 0.684378 | 5.3:-11772916 | None:intergenic |
| TATTAATGTAGGCAATAGGG+GGG | 0.692237 | 5.3:+11773372 | MS.gene02451:intron |
| CAGATGTTATGCAAGCAAAG+GGG | 0.712508 | 5.3:+11772828 | MS.gene02451:CDS |
| AAGTGATGGAATTTGAAACA+CGG | 0.715996 | 5.3:-11772436 | None:intergenic |
| TTGTGAATATGTCATCACTG+AGG | 0.762460 | 5.3:+11772379 | MS.gene02451:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTACATAATCATTTT+AGG | + | chr5.3:11773189-11773208 | MS.gene02451:intron | 10.0% |
| !! | ATTTCAAAAACAAATTCATA+AGG | + | chr5.3:11773301-11773320 | MS.gene02451:intron | 15.0% |
| !! | TTATGAGCTTAAAAAAAAAT+GGG | + | chr5.3:11772022-11772041 | MS.gene02451:CDS | 15.0% |
| !!! | ATAACTATATTTTAAAAAGG+TGG | + | chr5.3:11772546-11772565 | MS.gene02451:CDS | 15.0% |
| !!! | CTGATAACTATATTTTAAAA+AGG | + | chr5.3:11772543-11772562 | MS.gene02451:CDS | 15.0% |
| !!! | CTTTTTAAAATATAGTTATC+AGG | - | chr5.3:11772545-11772564 | None:intergenic | 15.0% |
| !!! | TGTTTTAATTTTACTTGTTT+TGG | + | chr5.3:11772988-11773007 | MS.gene02451:intron | 15.0% |
| !! | CTTATGAGCTTAAAAAAAAA+TGG | + | chr5.3:11772021-11772040 | MS.gene02451:CDS | 20.0% |
| !! | TGTCATGAATATTAAATTTG+TGG | - | chr5.3:11771983-11772002 | None:intergenic | 20.0% |
| !! | TTAATATTCATGACAAATCT+TGG | + | chr5.3:11771988-11772007 | MS.gene02451:CDS | 20.0% |
| !! | TTCGTAAACAAAAAAAAAGA+TGG | + | chr5.3:11770999-11771018 | MS.gene02451:CDS | 20.0% |
| !!! | AACATATTACAAATGTGTTT+TGG | + | chr5.3:11771510-11771529 | MS.gene02451:CDS | 20.0% |
| !!! | TTTTACGTTGTTATTAATGT+AGG | + | chr5.3:11773361-11773380 | MS.gene02451:intron | 20.0% |
| ! | AAAATGGAGTTAAACATCTT+GGG | + | chr5.3:11771856-11771875 | MS.gene02451:CDS | 25.0% |
| ! | GTTTGAATTGAATGATGTTA+AGG | + | chr5.3:11772514-11772533 | MS.gene02451:CDS | 25.0% |
| ! | TGAAAGAAGAAAAAGAAGTA+TGG | + | chr5.3:11771394-11771413 | MS.gene02451:CDS | 25.0% |
| ! | TGTTATTAATGTAGGCAATA+GGG | + | chr5.3:11773369-11773388 | MS.gene02451:intron | 25.0% |
| !! | TTGTTATTAATGTAGGCAAT+AGG | + | chr5.3:11773368-11773387 | MS.gene02451:intron | 25.0% |
| !!! | AAGCAGATTTTGAGATATTT+TGG | + | chr5.3:11771946-11771965 | MS.gene02451:CDS | 25.0% |
| !!! | AATTCTAGGATATTCACATT+CGG | - | chr5.3:11772140-11772159 | None:intergenic | 25.0% |
| !!! | ACATAATCATTTTAGGTTGA+TGG | + | chr5.3:11773196-11773215 | MS.gene02451:intron | 25.0% |
| !!! | TTTTGAAATTACCATTAGCA+TGG | - | chr5.3:11773290-11773309 | None:intergenic | 25.0% |
| ACCTAAAGAAAAAAGTTCAC+AGG | + | chr5.3:11772940-11772959 | MS.gene02451:CDS | 30.0% | |
| ATTACACTTTCTCGTAAGAA+TGG | + | chr5.3:11771140-11771159 | MS.gene02451:CDS | 30.0% | |
| CAAAATGGAGTTAAACATCT+TGG | + | chr5.3:11771855-11771874 | MS.gene02451:CDS | 30.0% | |
| CAAAATGGTTGAAGAATTCT+AGG | - | chr5.3:11772154-11772173 | None:intergenic | 30.0% | |
| CCTCAACAACTATTTCAAAA+TGG | - | chr5.3:11772169-11772188 | None:intergenic | 30.0% | |
| GAGAAAAGATATGCATATGA+AGG | + | chr5.3:11771074-11771093 | MS.gene02451:CDS | 30.0% | |
| GTTATTAATGTAGGCAATAG+GGG | + | chr5.3:11773370-11773389 | MS.gene02451:intron | 30.0% | |
| GTTGTTTGATACATTCTTAC+AGG | + | chr5.3:11771716-11771735 | MS.gene02451:CDS | 30.0% | |
| TATGTTTGTCTTCAAAGTCA+TGG | - | chr5.3:11771178-11771197 | None:intergenic | 30.0% | |
| TGTCTCTAAGTTCATTAAAG+CGG | + | chr5.3:11772664-11772683 | MS.gene02451:CDS | 30.0% | |
| TTATTAATGTAGGCAATAGG+GGG | + | chr5.3:11773371-11773390 | MS.gene02451:intron | 30.0% | |
| TTTCAACCATTATAGAGGTT+CGG | + | chr5.3:11771641-11771660 | MS.gene02451:intron | 30.0% | |
| ! | AAGGCAATTTGTTCTAACAT+CGG | - | chr5.3:11771114-11771133 | None:intergenic | 30.0% |
| ! | AAGTGATGGAATTTGAAACA+CGG | - | chr5.3:11772439-11772458 | None:intergenic | 30.0% |
| ! | ACATGGCATTTGTTACAAAA+TGG | + | chr5.3:11771840-11771859 | MS.gene02451:CDS | 30.0% |
| ! | ATTCGATTTCTAGACAAGTT+AGG | - | chr5.3:11772632-11772651 | None:intergenic | 30.0% |
| ! | ATTTTGGATTACGGGTATTT+TGG | + | chr5.3:11771548-11771567 | MS.gene02451:CDS | 30.0% |
| ! | GTATTTTCAACGACAATTGT+TGG | + | chr5.3:11771445-11771464 | MS.gene02451:CDS | 30.0% |
| ! | GTGTGTATATTTTTCCCATT+TGG | - | chr5.3:11772277-11772296 | None:intergenic | 30.0% |
| ! | TGTAGGAAGTTTGATACTTT+TGG | + | chr5.3:11772464-11772483 | MS.gene02451:CDS | 30.0% |
| !! | TCTCTGAAATTTGTAGATCA+TGG | - | chr5.3:11771202-11771221 | None:intergenic | 30.0% |
| !! | TTTCCCATTTGGATTAGTAT+TGG | - | chr5.3:11772266-11772285 | None:intergenic | 30.0% |
| !!! | ACCTGTGAACTTTTTTCTTT+AGG | - | chr5.3:11772944-11772963 | None:intergenic | 30.0% |
| !!! | CCATTTTGAAATAGTTGTTG+AGG | + | chr5.3:11772166-11772185 | MS.gene02451:CDS | 30.0% |
| !!! | TGTGAACTTTTTTCTTTAGG+TGG | - | chr5.3:11772941-11772960 | None:intergenic | 30.0% |
| AAAAAAAGCAAGTGGCCTAT+TGG | - | chr5.3:11771615-11771634 | None:intergenic | 35.0% | |
| AACATGCAGTAGCAGAAAAT+AGG | - | chr5.3:11773024-11773043 | None:intergenic | 35.0% | |
| AACCAGGAAAAAAAAGCAAG+TGG | - | chr5.3:11771623-11771642 | None:intergenic | 35.0% | |
| AAGTTCACAGGTATATGAGT+TGG | + | chr5.3:11772952-11772971 | MS.gene02451:intron | 35.0% | |
| ACATCTGAACTCACAATTTC+TGG | - | chr5.3:11772815-11772834 | None:intergenic | 35.0% | |
| AGACAAGTGAGTCATTTAGA+TGG | + | chr5.3:11771694-11771713 | MS.gene02451:CDS | 35.0% | |
| AGCTAATGTTGGATTTACAG+AGG | + | chr5.3:11771349-11771368 | MS.gene02451:CDS | 35.0% | |
| ATATGACCGAACCTCTATAA+TGG | - | chr5.3:11771650-11771669 | None:intergenic | 35.0% | |
| ATGGACAATAACGGTGATAA+TGG | + | chr5.3:11772782-11772801 | MS.gene02451:CDS | 35.0% | |
| ATTCCATCACTTGTAGTTGT+AGG | + | chr5.3:11772447-11772466 | MS.gene02451:CDS | 35.0% | |
| CATCTGATATGCATGAAAGA+AGG | - | chr5.3:11771480-11771499 | None:intergenic | 35.0% | |
| CGCTTAATTCTCTTTGAACT+GGG | - | chr5.3:11772866-11772885 | None:intergenic | 35.0% | |
| CTTCTTTCATGCATATCAGA+TGG | + | chr5.3:11771478-11771497 | MS.gene02451:CDS | 35.0% | |
| CTTGCTTATAGTTTCCGTAT+GGG | + | chr5.3:11770957-11770976 | MS.gene02451:CDS | 35.0% | |
| GAGTCAGATTCATGTCTAAT+TGG | - | chr5.3:11772356-11772375 | None:intergenic | 35.0% | |
| GATGATTGGAAACCAAAGAT+TGG | + | chr5.3:11770894-11770913 | MS.gene02451:CDS | 35.0% | |
| GCAAGCATATGAGATTGATT+TGG | + | chr5.3:11771262-11771281 | MS.gene02451:CDS | 35.0% | |
| GCACCAATACTAATCCAAAT+GGG | + | chr5.3:11772260-11772279 | MS.gene02451:CDS | 35.0% | |
| TAAGCGATACAAAAGTTGTC+TGG | + | chr5.3:11772880-11772899 | MS.gene02451:CDS | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | + | chr5.3:11771352-11771371 | MS.gene02451:CDS | 35.0% | |
| TATTAATGTAGGCAATAGGG+GGG | + | chr5.3:11773372-11773391 | MS.gene02451:intron | 35.0% | |
| TCAAATCCCATTCCAATCTT+TGG | - | chr5.3:11770909-11770928 | None:intergenic | 35.0% | |
| TCAGATGTTATGCAAGCAAA+GGG | + | chr5.3:11772827-11772846 | MS.gene02451:CDS | 35.0% | |
| TCGCTTAATTCTCTTTGAAC+TGG | - | chr5.3:11772867-11772886 | None:intergenic | 35.0% | |
| TGATATGCATGAAAGAAGGA+TGG | - | chr5.3:11771476-11771495 | None:intergenic | 35.0% | |
| TGCACCAATACTAATCCAAA+TGG | + | chr5.3:11772259-11772278 | MS.gene02451:CDS | 35.0% | |
| TGCATTCATTCCATCGAAAT+AGG | - | chr5.3:11773402-11773421 | None:intergenic | 35.0% | |
| TGGAAACCAAAGATTGGAAT+GGG | + | chr5.3:11770900-11770919 | MS.gene02451:CDS | 35.0% | |
| TGGAATGGGATTTGATTCTA+TGG | + | chr5.3:11770914-11770933 | MS.gene02451:CDS | 35.0% | |
| TGGCTCAAGTTTCTTGATAA+TGG | + | chr5.3:11772713-11772732 | MS.gene02451:CDS | 35.0% | |
| TTCAGATGTTATGCAAGCAA+AGG | + | chr5.3:11772826-11772845 | MS.gene02451:CDS | 35.0% | |
| TTCTCGTAAGAATGGAAAGT+TGG | + | chr5.3:11771148-11771167 | MS.gene02451:CDS | 35.0% | |
| TTGGAAACCAAAGATTGGAA+TGG | + | chr5.3:11770899-11770918 | MS.gene02451:CDS | 35.0% | |
| TTGTGAATATGTCATCACTG+AGG | + | chr5.3:11772379-11772398 | MS.gene02451:CDS | 35.0% | |
| ! | AAGCAATAACAGCTTTGTCA+AGG | - | chr5.3:11773121-11773140 | None:intergenic | 35.0% |
| ! | AGAAAAAGAAGTATGGCGTA+TGG | + | chr5.3:11771401-11771420 | MS.gene02451:CDS | 35.0% |
| ! | ATAGAGGTTCGGTCATATTT+GGG | + | chr5.3:11771652-11771671 | MS.gene02451:intron | 35.0% |
| ! | CACAGATGATTTTGGATTAC+GGG | + | chr5.3:11771540-11771559 | MS.gene02451:CDS | 35.0% |
| ! | GAGAAAGTGTAATTCTTGCA+AGG | - | chr5.3:11771133-11771152 | None:intergenic | 35.0% |
| ! | GCACAGATGATTTTGGATTA+CGG | + | chr5.3:11771539-11771558 | MS.gene02451:CDS | 35.0% |
| ! | TATAGAGGTTCGGTCATATT+TGG | + | chr5.3:11771651-11771670 | MS.gene02451:intron | 35.0% |
| ! | TGGAAGAGGCTAGTAAATTT+TGG | + | chr5.3:11770934-11770953 | MS.gene02451:CDS | 35.0% |
| !! | ATGTCGATTGGTTTGTTGTA+AGG | + | chr5.3:11771034-11771053 | MS.gene02451:CDS | 35.0% |
| !! | ATTGATTTGGCTAATGACTC+TGG | + | chr5.3:11771275-11771294 | MS.gene02451:CDS | 35.0% |
| !!! | TTTTGGCGATGTTGTTTCTT+TGG | + | chr5.3:11771565-11771584 | MS.gene02451:CDS | 35.0% |
| AAACTTGAGCCATTCTTCCT+TGG | - | chr5.3:11772705-11772724 | None:intergenic | 40.0% | |
| AACTTGAGCCATTCTTCCTT+GGG | - | chr5.3:11772704-11772723 | None:intergenic | 40.0% | |
| AATCCTCACATAAGCTTGCA+AGG | + | chr5.3:11772222-11772241 | MS.gene02451:CDS | 40.0% | |
| AATCTTGCACAACGCCATAA+CGG | - | chr5.3:11772583-11772602 | None:intergenic | 40.0% | |
| ACATCTTGGGAACTTGATGA+CGG | + | chr5.3:11771869-11771888 | MS.gene02451:CDS | 40.0% | |
| ACTTGATCCTCATGTACTTG+TGG | - | chr5.3:11773256-11773275 | None:intergenic | 40.0% | |
| AGGCAAAACATGAAGGATCT+TGG | + | chr5.3:11772399-11772418 | MS.gene02451:CDS | 40.0% | |
| ATCACTGAGGCAAAACATGA+AGG | + | chr5.3:11772392-11772411 | MS.gene02451:CDS | 40.0% | |
| ATGCAGTAGCAGAAAATAGG+TGG | - | chr5.3:11773021-11773040 | None:intergenic | 40.0% | |
| CAATTACACAGCCATGCTAA+TGG | + | chr5.3:11773276-11773295 | MS.gene02451:CDS | 40.0% | |
| CAGATGTTATGCAAGCAAAG+GGG | + | chr5.3:11772828-11772847 | MS.gene02451:CDS | 40.0% | |
| CATAAACCATGATGAGTCTC+GGG | - | chr5.3:11771819-11771838 | None:intergenic | 40.0% | |
| CCTCTATAATGGTTGAAACC+AGG | - | chr5.3:11771639-11771658 | None:intergenic | 40.0% | |
| CCTGGTTTCAACCATTATAG+AGG | + | chr5.3:11771636-11771655 | MS.gene02451:intron | 40.0% | |
| CTCATCATGGTTTATGCACA+TGG | + | chr5.3:11771823-11771842 | MS.gene02451:CDS | 40.0% | |
| CTTCCTACAACTACAAGTGA+TGG | - | chr5.3:11772453-11772472 | None:intergenic | 40.0% | |
| CTTGATCCTCATGTACTTGT+GGG | - | chr5.3:11773255-11773274 | None:intergenic | 40.0% | |
| GCACAAGCTATGGACAATAA+CGG | + | chr5.3:11772773-11772792 | MS.gene02451:CDS | 40.0% | |
| GCATAAACCATGATGAGTCT+CGG | - | chr5.3:11771820-11771839 | None:intergenic | 40.0% | |
| GCTTGCTTATAGTTTCCGTA+TGG | + | chr5.3:11770956-11770975 | MS.gene02451:CDS | 40.0% | |
| GGGATTTGATTCTATGGAAG+AGG | + | chr5.3:11770920-11770939 | MS.gene02451:CDS | 40.0% | |
| GTTGTAAGGAAGGACTAAAG+AGG | + | chr5.3:11771048-11771067 | MS.gene02451:CDS | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | - | chr5.3:11772228-11772247 | None:intergenic | 40.0% | |
| TAAGGAAGGACTAAAGAGGA+AGG | + | chr5.3:11771052-11771071 | MS.gene02451:CDS | 40.0% | |
| TAGTGTATCGTCATGTCGAT+TGG | + | chr5.3:11771022-11771041 | MS.gene02451:CDS | 40.0% | |
| TATAGTTTCCGTATGGGCTT+CGG | + | chr5.3:11770963-11770982 | MS.gene02451:CDS | 40.0% | |
| TGGCATCTTCAGATGATGAT+TGG | + | chr5.3:11770880-11770899 | MS.gene02451:CDS | 40.0% | |
| TGGCTAATGACTCTGGATTA+AGG | + | chr5.3:11771282-11771301 | MS.gene02451:CDS | 40.0% | |
| TGGGCTGCATGTTATATGAA+GGG | + | chr5.3:11772041-11772060 | MS.gene02451:CDS | 40.0% | |
| TTCATTCCATCGAAATAGGC+TGG | - | chr5.3:11773398-11773417 | None:intergenic | 40.0% | |
| TTGATCCTCATGTACTTGTG+GGG | - | chr5.3:11773254-11773273 | None:intergenic | 40.0% | |
| ! | AACTTTTGAGCACACAAGCA+GGG | + | chr5.3:11771321-11771340 | MS.gene02451:CDS | 40.0% |
| ! | ATGGCGTTGTGCAAGATTTT+AGG | + | chr5.3:11772585-11772604 | MS.gene02451:CDS | 40.0% |
| ! | ATGGGCTGCATGTTATATGA+AGG | + | chr5.3:11772040-11772059 | MS.gene02451:CDS | 40.0% |
| ! | GTGTGATGCACAGATGATTT+TGG | + | chr5.3:11771532-11771551 | MS.gene02451:CDS | 40.0% |
| ! | TAGAGGTTCGGTCATATTTG+GGG | + | chr5.3:11771653-11771672 | MS.gene02451:intron | 40.0% |
| ! | TGGCGTTGTGCAAGATTTTA+GGG | + | chr5.3:11772586-11772605 | MS.gene02451:CDS | 40.0% |
| !! | AATAACGGTGATAATGGTGC+TGG | + | chr5.3:11772788-11772807 | MS.gene02451:CDS | 40.0% |
| !! | CGATTGGTTTGTTGTAAGGA+AGG | + | chr5.3:11771038-11771057 | MS.gene02451:CDS | 40.0% |
| !! | TGTGCAAGATTTTAGGGGAA+GGG | + | chr5.3:11772592-11772611 | MS.gene02451:CDS | 40.0% |
| !! | TTGTGCAAGATTTTAGGGGA+AGG | + | chr5.3:11772591-11772610 | MS.gene02451:CDS | 40.0% |
| !!! | TTTTTTCTTTAGGTGGAGCG+CGG | - | chr5.3:11772934-11772953 | None:intergenic | 40.0% |
| AAGCATCACCCAAGGAAGAA+TGG | + | chr5.3:11772693-11772712 | MS.gene02451:CDS | 45.0% | |
| ACCAAGATCAAGCAATGGCA+AGG | + | chr5.3:11771775-11771794 | MS.gene02451:CDS | 45.0% | |
| ACTGTACCAACCATGCCAAT+AGG | + | chr5.3:11771597-11771616 | MS.gene02451:intron | 45.0% | |
| AGTATGGCGTATGGTGAGAT+TGG | + | chr5.3:11771410-11771429 | MS.gene02451:CDS | 45.0% | |
| ATCTTGCACAACGCCATAAC+GGG | - | chr5.3:11772582-11772601 | None:intergenic | 45.0% | |
| CACTGACCAAGATCAAGCAA+TGG | + | chr5.3:11771770-11771789 | MS.gene02451:CDS | 45.0% | |
| CAGAGACAACACACATGCTT+CGG | + | chr5.3:11771216-11771235 | MS.gene02451:CDS | 45.0% | |
| CCAAGATCAAGCAATGGCAA+GGG | + | chr5.3:11771776-11771795 | MS.gene02451:CDS | 45.0% | |
| TATGCAAGCAAAGGGGTTCA+GGG | + | chr5.3:11772835-11772854 | MS.gene02451:CDS | 45.0% | |
| TGATCCTCATGTACTTGTGG+GGG | - | chr5.3:11773253-11773272 | None:intergenic | 45.0% | |
| TGGTCAGTGAAGATCGTCTT+TGG | - | chr5.3:11771759-11771778 | None:intergenic | 45.0% | |
| TTATGCAAGCAAAGGGGTTC+AGG | + | chr5.3:11772834-11772853 | MS.gene02451:CDS | 45.0% | |
| ! | CAACTTTTGAGCACACAAGC+AGG | + | chr5.3:11771320-11771339 | MS.gene02451:CDS | 45.0% |
| ! | CATCTTGGGAACTTGATGAC+GGG | + | chr5.3:11771870-11771889 | MS.gene02451:CDS | 45.0% |
| ! | GGCGTTGTGCAAGATTTTAG+GGG | + | chr5.3:11772587-11772606 | MS.gene02451:CDS | 45.0% |
| !! | ATGAAGGGAGCGTTAACACT+TGG | + | chr5.3:11772056-11772075 | MS.gene02451:CDS | 45.0% |
| !!! | GGCCACTTGCTTTTTTTTCC+TGG | + | chr5.3:11771618-11771637 | MS.gene02451:intron | 45.0% |
| AAGCAAGTGGCCTATTGGCA+TGG | - | chr5.3:11771610-11771629 | None:intergenic | 50.0% | |
| AAGTGGCCTATTGGCATGGT+TGG | - | chr5.3:11771606-11771625 | None:intergenic | 50.0% | |
| ACTTGTGGGGGCTCATAAGT+TGG | - | chr5.3:11773241-11773260 | None:intergenic | 50.0% | |
| AGAACTTCGCGCACAAGCTA+TGG | + | chr5.3:11772763-11772782 | MS.gene02451:CDS | 50.0% | |
| CCCTTGCCATTGCTTGATCT+TGG | - | chr5.3:11771779-11771798 | None:intergenic | 50.0% | |
| CTCTAACTCCGAAGCCCATA+CGG | - | chr5.3:11770974-11770993 | None:intergenic | 50.0% | |
| GCAGGGCATAGAGCTAATGT+TGG | + | chr5.3:11771338-11771357 | MS.gene02451:CDS | 50.0% | |
| TGGACAAGAGAAGCCCGTTA+TGG | + | chr5.3:11772566-11772585 | MS.gene02451:CDS | 50.0% | |
| TTTAGGGGAAGGGAGGTTGA+AGG | + | chr5.3:11772602-11772621 | MS.gene02451:CDS | 50.0% | |
| ! | AGGTTCGGTCATATTTGGGG+CGG | + | chr5.3:11771656-11771675 | MS.gene02451:CDS | 50.0% |
| !! | GCAAGATTTTAGGGGAAGGG+AGG | + | chr5.3:11772595-11772614 | MS.gene02451:CDS | 50.0% |
| GTGATGCCCGAGACTCATCA+TGG | + | chr5.3:11771810-11771829 | MS.gene02451:CDS | 55.0% | |
| TGAGCCCCCACAAGTACATG+AGG | + | chr5.3:11773246-11773265 | MS.gene02451:CDS | 55.0% | |
| ! | GGCAACTGAAGCATCACCCA+AGG | + | chr5.3:11772685-11772704 | MS.gene02451:CDS | 55.0% |
| ! | GGCATGGTTGGTACAGTACG+TGG | - | chr5.3:11771594-11771613 | None:intergenic | 55.0% |
| ! | TGTGGGGGCTCATAAGTTGG+AGG | - | chr5.3:11773238-11773257 | None:intergenic | 55.0% |
| !! | CTTGGGAACTTGATGACGGG+AGG | + | chr5.3:11771873-11771892 | MS.gene02451:CDS | 55.0% |
| GAGCGCGGCTAGATGTAGCG+CGG | - | chr5.3:11772919-11772938 | None:intergenic | 65.0% | |
| GGGGGGCCAGCCTATTTCGA+TGG | + | chr5.3:11773389-11773408 | MS.gene02451:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 11770879 | 11773424 | 11770879 | ID=MS.gene02451 |
| chr5.3 | mRNA | 11770879 | 11773424 | 11770879 | ID=MS.gene02451.t1;Parent=MS.gene02451 |
| chr5.3 | exon | 11770879 | 11771594 | 11770879 | ID=MS.gene02451.t1.exon1;Parent=MS.gene02451.t1 |
| chr5.3 | CDS | 11770879 | 11771594 | 11770879 | ID=cds.MS.gene02451.t1;Parent=MS.gene02451.t1 |
| chr5.3 | exon | 11771656 | 11772961 | 11771656 | ID=MS.gene02451.t1.exon2;Parent=MS.gene02451.t1 |
| chr5.3 | CDS | 11771656 | 11772961 | 11771656 | ID=cds.MS.gene02451.t1;Parent=MS.gene02451.t1 |
| chr5.3 | exon | 11773211 | 11773297 | 11773211 | ID=MS.gene02451.t1.exon3;Parent=MS.gene02451.t1 |
| chr5.3 | CDS | 11773211 | 11773297 | 11773211 | ID=cds.MS.gene02451.t1;Parent=MS.gene02451.t1 |
| chr5.3 | exon | 11773383 | 11773424 | 11773383 | ID=MS.gene02451.t1.exon4;Parent=MS.gene02451.t1 |
| chr5.3 | CDS | 11773383 | 11773424 | 11773383 | ID=cds.MS.gene02451.t1;Parent=MS.gene02451.t1 |
| Gene Sequence |
| Protein sequence |