AlfalfaGEDB | MS.gene024551

M. sativa cultivar XinJiangDaYe / MS.gene024551

KEGG: -
GO: -
PFAM: PF00249.34 PF14379.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024551.t1	XP_013450552.1	96.4	441	14	1	1	439	1	441	8.50E-218	766.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024551.t1	Q8GUN5	46.2	379	169	8	3	360	14	378	3.1e-51	204.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024551.t1	A0A072UFL5	96.4	441	14	1	1	439	1	441	6.2e-218	766.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene024551.t1	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024551.t1	MTR_7g115530	96.825	441	12	1	1	439	1	441	0.0	875
MS.gene024551.t1	MTR_7g115530	96.012	326	11	1	1	324	1	326	0.0	647
MS.gene024551.t1	MTR_7g115530	96.346	301	9	1	1	299	1	301	0.0	599
MS.gene024551.t1	MTR_7g115530	94.526	274	13	1	1	272	1	274	0.0	535
MS.gene024551.t1	MTR_7g115530	95.185	270	11	1	1	268	1	270	0.0	532
MS.gene024551.t1	MTR_7g115530	94.872	273	12	1	13	283	13	285	0.0	523
MS.gene024551.t1	MTR_1g080330	54.680	406	130	9	47	437	19	385	1.87e-131	384
MS.gene024551.t1	MTR_1g080330	58.562	292	78	6	47	323	19	282	3.96e-101	303
MS.gene024551.t1	MTR_7g098250	43.885	417	200	9	1	388	26	437	1.63e-94	293
MS.gene024551.t1	MTR_1g053835	52.542	177	70	5	203	375	247	413	6.84e-50	175

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024551.t1	AT5G29000	45.789	380	169	9	3	360	14	378	1.40e-87	273
MS.gene024551.t1	AT5G29000	47.198	339	140	7	52	360	6	335	2.76e-84	263
MS.gene024551.t1	AT5G29000	47.198	339	140	7	52	360	6	335	2.76e-84	263
MS.gene024551.t1	AT3G04450	49.175	303	121	8	93	377	71	358	3.02e-79	251
MS.gene024551.t1	AT3G04450	49.175	303	121	8	93	377	71	358	3.02e-79	251
MS.gene024551.t1	AT3G04450	49.175	303	121	8	93	377	111	398	1.01e-78	251
MS.gene024551.t1	AT4G28610	52.778	252	106	10	106	345	105	355	1.10e-71	232
MS.gene024551.t1	AT2G20400	39.701	335	155	10	44	345	40	360	1.12e-51	179
MS.gene024551.t1	AT2G20400	39.881	336	154	11	44	345	40	361	1.48e-50	176
MS.gene024551.t1	AT2G01060	48.603	179	86	2	215	392	14	187	1.46e-48	167

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Find 95 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGAATATCTGGCAA+TGG	0.585936	7.3:+2050141	None:intergenic
AAACTAAGCCTAGAATGCGT+TGG	0.536261	7.3:-2049494	MS.gene024551:CDS
AAAGATGAACGGGATAAATC+AGG	0.451170	7.3:-2047829	MS.gene024551:CDS
AAATTGTCCACCGGAGAAGA+AGG	0.507969	7.3:+2047862	None:intergenic
AAGAAAATGATGATATATCG+TGG	0.571936	7.3:-2050173	MS.gene024551:CDS
AAGCAATTATATGAAACCCC+CGG	0.622265	7.3:-2050442	MS.gene024551:CDS
AAGGTGCATTTGAAGGGGAA+GGG	0.624076	7.3:+2047911	None:intergenic
AAGTTACCAATGAACATGAG+AGG	0.619833	7.3:-2047726	MS.gene024551:CDS
AATTATGGTTACAGGAGTAA+GGG	0.560396	7.3:-2048156	MS.gene024551:intron
AATTGAGGAAATGAAATCTC+TGG	0.418669	7.3:-2048267	MS.gene024551:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTAACAAGAATAAGGG+GGG	+	chr7.3:2049435-2049454	None:intergenic	30.0%
AACCTGCTGTATAAAACAAT+AGG	+	chr7.3:2049089-2049108	None:intergenic	30.0%
AATTATGGTTACAGGAGTAA+GGG	-	chr7.3:2049999-2050018	MS.gene024551:CDS	30.0%
AATTGAGGAAATGAAATCTC+TGG	-	chr7.3:2049888-2049907	MS.gene024551:intron	30.0%
ACATCTTTCTCGAAACTATA+AGG	+	chr7.3:2049154-2049173	None:intergenic	30.0%
ACCATAATTCAAGGAAACAA+TGG	+	chr7.3:2049988-2050007	None:intergenic	30.0%
ACCTGCTGTATAAAACAATA+GGG	+	chr7.3:2049088-2049107	None:intergenic	30.0%
AGGCAGTTACTAGATAAATA+GGG	+	chr7.3:2049660-2049679	None:intergenic	30.0%
ATAATGATGTTAACATGCAG+AGG	-	chr7.3:2048809-2048828	MS.gene024551:intron	30.0%
ATAATTGCTTTCCATAAGAC+TGG	+	chr7.3:2047703-2047722	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	2047672	2050505	2047672	ID=MS.gene024551
chr7.3	mRNA	2047672	2050505	2047672	ID=MS.gene024551.t1;Parent=MS.gene024551
chr7.3	exon	2049957	2050505	2049957	ID=MS.gene024551.t1.exon1;Parent=MS.gene024551.t1
chr7.3	CDS	2049957	2050505	2049957	ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3	exon	2049436	2049607	2049436	ID=MS.gene024551.t1.exon2;Parent=MS.gene024551.t1
chr7.3	CDS	2049436	2049607	2049436	ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3	exon	2049272	2049348	2049272	ID=MS.gene024551.t1.exon3;Parent=MS.gene024551.t1
chr7.3	CDS	2049272	2049348	2049272	ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3	exon	2049116	2049155	2049116	ID=MS.gene024551.t1.exon4;Parent=MS.gene024551.t1
chr7.3	CDS	2049116	2049155	2049116	ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3	exon	2048257	2048314	2048257	ID=MS.gene024551.t1.exon5;Parent=MS.gene024551.t1
chr7.3	CDS	2048257	2048314	2048257	ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3	exon	2048095	2048164	2048095	ID=MS.gene024551.t1.exon6;Parent=MS.gene024551.t1
chr7.3	CDS	2048095	2048164	2048095	ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3	exon	2047672	2048025	2047672	ID=MS.gene024551.t1.exon7;Parent=MS.gene024551.t1
chr7.3	CDS	2047672	2048025	2047672	ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1

Gene Sequence

>MS.gene024551

ATGCCTTCTTCGTCTTCACCTGTTCTTCCCAGTCTTATGGAAAGCAATTATATGAAACCCCCGGATTCTTTTCATCGTTCACCTGTCAGGGGTCTGACAGCAAATCCTGCCTCATTGCAAGCTACATCATCGTATCCGATCAGAAGTGTTCGACCTGTGTTTTCAACCAATGATGAATGTCCTGGCGGCGTCCCTTTTCCTCCCGTTTCACAGCATGATAGGCAATATCAAGATTCTCCCTTCGCTTCTCAGGCATTAGGTGACAATGTGTCTTCGGAAATCCACTCAGCAACATTCACTTCTCACCTTCAAGAAAATGATGATATATCGTGGGGACCAGATCCATTGCCAGATATTCTTGGTTTTCCTGAAATTTTTTCTGTCCAGCATGATCAGGTGGAAAACAGTGCTTGTTACATGAATGAAGACAATGTCAAAAAAACTGATTTTGGGGAGTGGGTTGAACAACTAATGACAAGTGATGATTCTGTTAATCCAAATTGGAGTCAGCTTCTTGGTGATGACAATGTTGTTGAACCAACACAACAGGTTTGTTTCTCAATCTGATTTCTAATCCTGACTTGAACAAGAACAATCCTAGGCCAAACTTTACTTACCTCCCAGCCGAACTCACTAGGGCCCATTTGCCTTAGGAGCTGGAGGTTTAAGACAAAGAAACAAAACAAACACACACGCAGTCCTCCTCACCTAGGTTTTCATTTCTATTAACTTTCTGCATTAATGCCATTCTATTATTATTTATTCGAGAGGAAAATCCATATTTGGATGATCAGTTCTATTATTAATTGAATTTGTCACCATGTGCATATAGTTCATTCCCTATTCCCCTTTAGGTTGTATGCGGCTGTTAACACTATATCCTACTTTTCTGATGCAGGCGATGCAGGTTTCTCAGAAGCAGCATACACCATCTGGAGAAGTCAACAATCTTTGTAATCCAGCTTCAGCATCAGCATCAACTGCTTCTCAAACTAAGCCTAGAATGCGTTGGAGTCCAGAACTTCACGAAGCTTTTGTGGAAGCAGTCAACCAGCTTGGTGGTAGTGAGAGTATGTTTACTTCTTCCTAATCTCATCCTTCGTTTGACCTTCTCTCATGAACGTTTCTTCTCATCATATAATGATGTTAACATGCAGAGGCTACTCCAAAAGGTGTCTTGAATCTAATGAATGTTGAGGGCCTTACCATCTACCATGTAAAAAGCCACCTCCAGGTTCATATATGGATTTTCCGTCCTCTTAAATTGAGCTTGTTGGTGCCGTCACCGGCGTGTATGTCGATTTTTATAATCTAATGTTGTTTATAAATTAATTGTTCTTTTAATTTCAGAAGTATAGAACTGCCAGATACAAACCTGAGTCACCAGAAGGTATACAAGAGTGTACTTATAATCCCTATTGTTTTATACAGCAGGTTTTGCTACCAATTTTTTTTTTGTGGATGTGTGGCTTCTTTATCCCTTATAGTTTCGAGAAAGATGTTTTATTTCAACTTCAAATGTCTTTTTTGTTTGTGTTCTTCTTCTTCATGTCCTATGTTGGGATTGATAAAAAGAAGATATGGATGAAACACAAAAGACCATTTTAAAAATAGGAACAATCTCTTATATTTGTTAAAGTGAAAAGGAAAGGTAGAGAAGAAAGAAAAGTGTAGAAGTAAAAATCCAATTATTCCTTTATTTAAAACTTCAAAAGTTTATCTATTTTTCTCTCATTCAAAGGCAAGTTAGAATGCTTTTCCCCCCCTTATTCTTGTTACATTTGAAGAATATTTTATTTTATGCACACAGAAACTTGATGAAACCAGGACCAAACATAGAAATATAATAGAAACAATTTAATTTTATTGATAATAGAATAGAATACGATTACACAATAGGCTCCCTAGGAATTCGAGAGTCTTGGGTCTCTCCCTCCAAGAATTCGAGGGCTTGGTCTCTCGCTATTGACATTGTCCTTCAGATTCCCTATTTATCTAGTAACTGCCTAGAAACATAACTGCTTCCTAATACATAACTGTTGCACATTAATGTAATAATTGCTGGCTAATAAAATAATAACTGCCTAATAATGTTTACTAATAGTAGGCCTAACAAAACTCCTTTAATATTTTGTGAAAATATAAGAGTAAGAATGTGAATGGTGAATGAGATCTTCTTCTGTACCTGCAGAAACTTCTGAGAAAAAGATGAGTTCAATTGAGGAAATGAAATCTCTGGACTTGAAAACGTGAGTCATTTCTCTAACTTCTTTTAGCTTTAGATATGATACTTATTGTTCACAAATCACAATTCCATTGTTTCCTTGAATTATGGTTACAGGAGTAAGGGAATCACTGAAGCATTACGGTTGCAGATGGAACTTCAGAAGCGACTTCATGAACAACTTGAGGTACATTATTGTTATTATCACCCGGAACTTCGAAGTTTTGGCATGTCTGATATTGTAATTGTTATACAGATTCAAAGGAAGTTGCAGATTCAAATTGAAAACCAAGGGAAACATCTTGAGATGATGTTTGAGAAACAGAAACAGATAGGTGACAACAAGAGCCCTTCCCCTTCAAATGCACCTTCTGCTGCAGTGTTGGACACGACGCCACCTTCTTCTCCGGTGGACAATTTAAAAACTTCAAAAGATGAACGGGATAAATCAGGATGTAACGCTGACATTCCTAAAGACATACCTGGAGAAAGTTCCCATGATGTAAGCAGAAAGCAAATGGCAGATGAAGCTGAAGTTACCAATGAACATGAGAGGGTAGATGATCAGTTTTCTGACGTGCCTCCAACAAAACGAGCGAAGATTCAATGA

Protein sequence

>MS.gene024551.t1

MPSSSSPVLPSLMESNYMKPPDSFHRSPVRGLTANPASLQATSSYPIRSVRPVFSTNDECPGGVPFPPVSQHDRQYQDSPFASQALGDNVSSEIHSATFTSHLQENDDISWGPDPLPDILGFPEIFSVQHDQVENSACYMNEDNVKKTDFGEWVEQLMTSDDSVNPNWSQLLGDDNVVEPTQQAMQVSQKQHTPSGEVNNLCNPASASASTASQTKPRMRWSPELHEAFVEAVNQLGGSEKATPKGVLNLMNVEGLTIYHVKSHLQKYRTARYKPESPEETSEKKMSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKHLEMMFEKQKQIGDNKSPSPSNAPSAAVLDTTPPSSPVDNLKTSKDERDKSGCNADIPKDIPGESSHDVSRKQMADEAEVTNEHERVDDQFSDVPPTKRAKIQ