AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024551

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024551.t1 MTR_7g115530 96.825 441 12 1 1 439 1 441 0.0 875
MS.gene024551.t1 MTR_7g115530 96.012 326 11 1 1 324 1 326 0.0 647
MS.gene024551.t1 MTR_7g115530 96.346 301 9 1 1 299 1 301 0.0 599
MS.gene024551.t1 MTR_7g115530 94.526 274 13 1 1 272 1 274 0.0 535
MS.gene024551.t1 MTR_7g115530 95.185 270 11 1 1 268 1 270 0.0 532
MS.gene024551.t1 MTR_7g115530 94.872 273 12 1 13 283 13 285 0.0 523
MS.gene024551.t1 MTR_1g080330 54.680 406 130 9 47 437 19 385 1.87e-131 384
MS.gene024551.t1 MTR_1g080330 58.562 292 78 6 47 323 19 282 3.96e-101 303
MS.gene024551.t1 MTR_7g098250 43.885 417 200 9 1 388 26 437 1.63e-94 293
MS.gene024551.t1 MTR_1g053835 52.542 177 70 5 203 375 247 413 6.84e-50 175
MS.gene024551.t1 MTR_7g093030 53.147 143 66 1 215 357 211 352 9.22e-48 168
MS.gene024551.t1 MTR_2g027860 54.362 149 66 1 216 362 49 197 3.47e-47 165
MS.gene024551.t1 MTR_7g088070 45.714 175 87 2 182 349 9 182 1.72e-46 162
MS.gene024551.t1 MTR_7g088070 44.382 178 89 2 182 349 9 186 8.50e-46 160
MS.gene024551.t1 MTR_6g032990 51.974 152 57 3 212 347 38 189 6.10e-41 150
MS.gene024551.t1 MTR_5g041350 36.979 192 97 4 212 381 11 200 6.72e-35 133
MS.gene024551.t1 MTR_5g027440 48.936 141 60 3 216 344 25 165 4.15e-34 129
MS.gene024551.t1 MTR_2g086450 42.767 159 70 3 212 349 41 199 6.58e-34 131
MS.gene024551.t1 MTR_6g444980 38.372 172 95 3 201 364 20 188 7.62e-34 130
MS.gene024551.t1 MTR_4g081710 38.144 194 93 5 212 381 13 203 3.29e-33 128
MS.gene024551.t1 MTR_6g444980 40.690 145 77 2 201 339 20 161 1.50e-31 124
MS.gene024551.t1 MTR_1g053800 40.252 159 92 2 190 348 153 308 4.41e-30 119
MS.gene024551.t1 MTR_2g027800 44.604 139 67 3 216 350 39 171 1.47e-29 117
MS.gene024551.t1 MTR_2g027800 40.136 147 76 1 216 350 39 185 2.02e-28 114
MS.gene024551.t1 MTR_7g093030 56.471 85 36 1 215 299 211 294 1.06e-27 112
MS.gene024551.t1 MTR_1g090670 38.889 144 79 1 216 350 44 187 1.39e-27 111
MS.gene024551.t1 MTR_7g068600 42.857 126 69 1 216 338 13 138 9.62e-27 107
MS.gene024551.t1 MTR_1g053830 50.515 97 44 3 203 299 7 99 6.67e-25 98.6
MS.gene024551.t1 MTR_7g093010 40.625 160 78 5 188 341 191 339 1.07e-23 102
MS.gene024551.t1 MTR_2g023580 59.420 69 26 1 217 285 56 122 4.85e-20 89.4
MS.gene024551.t1 MTR_0223s0040 67.857 56 18 0 217 272 19 74 1.66e-19 88.6
MS.gene024551.t1 MTR_1g112370 66.071 56 19 0 217 272 23 78 4.40e-19 88.2
MS.gene024551.t1 MTR_2g084230 60.294 68 26 1 217 284 98 164 1.54e-18 86.3
MS.gene024551.t1 MTR_3g450310 57.895 57 24 0 216 272 19 75 1.88e-18 84.0
MS.gene024551.t1 MTR_2g084230 60.294 68 26 1 217 284 98 164 1.97e-18 87.0
MS.gene024551.t1 MTR_8g086410 53.247 77 32 1 217 289 110 186 3.00e-18 87.0
MS.gene024551.t1 MTR_8g086410 53.247 77 32 1 217 289 112 188 3.00e-18 87.0
MS.gene024551.t1 MTR_7g069660 62.500 56 21 0 217 272 72 127 3.32e-18 85.9
MS.gene024551.t1 MTR_8g066310 40.945 127 64 2 210 336 167 282 1.21e-17 84.3
MS.gene024551.t1 MTR_6g071625 56.164 73 30 1 217 287 203 275 1.70e-17 84.0
MS.gene024551.t1 MTR_1g021520 66.071 56 19 0 217 272 127 182 1.82e-17 82.8
MS.gene024551.t1 MTR_2g016220 64.286 56 20 0 217 272 90 145 1.84e-17 84.0
MS.gene024551.t1 MTR_2g016220 64.286 56 20 0 217 272 90 145 2.06e-17 84.0
MS.gene024551.t1 MTR_8g086410 64.815 54 19 0 217 270 112 165 4.39e-17 83.6
MS.gene024551.t1 MTR_5g029470 61.667 60 23 0 213 272 216 275 1.78e-16 81.3
MS.gene024551.t1 MTR_3g064840 61.667 60 23 0 213 272 271 330 3.25e-16 80.9
MS.gene024551.t1 MTR_2g016220 68.000 50 16 0 217 266 90 139 1.38e-15 78.6
MS.gene024551.t1 MTR_2g450070 54.930 71 30 2 212 282 209 277 2.12e-15 79.0
MS.gene024551.t1 MTR_2g450070 54.930 71 30 2 212 282 209 277 2.31e-15 79.0
MS.gene024551.t1 MTR_4g121020 46.739 92 40 2 216 299 111 201 1.32e-14 76.3
MS.gene024551.t1 MTR_4g121020 46.739 92 40 2 216 299 215 305 1.56e-14 76.3
MS.gene024551.t1 MTR_4g121020 46.739 92 40 2 216 299 215 305 1.59e-14 76.3
MS.gene024551.t1 MTR_3g106220 60.345 58 22 1 212 269 194 250 1.67e-13 72.8
MS.gene024551.t1 MTR_4g021790 53.030 66 28 2 216 281 168 230 1.78e-13 70.9
MS.gene024551.t1 MTR_4g021855 41.905 105 47 4 205 299 158 258 1.80e-13 71.2
MS.gene024551.t1 MTR_1g093080 54.839 62 28 0 216 277 211 272 2.33e-13 71.6
MS.gene024551.t1 MTR_4g086835 62.963 54 20 0 216 269 274 327 2.75e-13 71.6
MS.gene024551.t1 MTR_4g131600 55.932 59 25 1 211 269 196 253 4.33e-13 71.6
MS.gene024551.t1 MTR_4g113140 53.030 66 31 0 210 275 229 294 5.62e-13 70.9
MS.gene024551.t1 MTR_1g013170 53.623 69 31 1 212 280 187 254 6.20e-13 70.9
MS.gene024551.t1 MTR_4g064730 51.562 64 30 1 206 269 121 183 9.92e-13 69.3
MS.gene024551.t1 MTR_1g032570 62.963 54 19 1 216 269 131 183 1.15e-12 70.1
MS.gene024551.t1 MTR_1g032570 62.963 54 19 1 216 269 200 252 1.19e-12 70.1
MS.gene024551.t1 MTR_4g131570 51.562 64 30 1 212 275 199 261 1.37e-12 70.1
MS.gene024551.t1 MTR_4g131580 53.125 64 29 1 212 275 196 258 2.01e-12 69.7
MS.gene024551.t1 MTR_5g054300 58.929 56 23 0 214 269 196 251 2.02e-12 68.6
MS.gene024551.t1 MTR_5g017980 57.895 57 24 0 213 269 190 246 3.59e-12 67.8
MS.gene024551.t1 MTR_4g086835 62.963 54 19 1 216 269 274 326 6.54e-12 67.4
MS.gene024551.t1 MTR_3g102590 53.226 62 28 1 212 273 139 199 6.85e-12 65.5
MS.gene024551.t1 MTR_7g117705 45.882 85 41 2 212 292 187 270 9.48e-12 67.0
MS.gene024551.t1 MTR_2g034960 59.259 54 21 1 216 269 211 263 1.02e-11 67.4
MS.gene024551.t1 MTR_4g098870 36.735 98 61 1 175 272 289 385 1.88e-11 66.6
MS.gene024551.t1 MTR_4g098870 36.735 98 61 1 175 272 269 365 2.02e-11 66.2
MS.gene024551.t1 MTR_4g098870 36.735 98 61 1 175 272 289 385 2.33e-11 66.2
MS.gene024551.t1 MTR_4g098870 36.735 98 61 1 175 272 308 404 2.36e-11 66.2
MS.gene024551.t1 MTR_1g090670 33.028 109 64 1 251 350 4 112 2.60e-11 63.5
MS.gene024551.t1 MTR_4g098870 36.735 98 61 1 175 272 269 365 2.61e-11 65.9
MS.gene024551.t1 MTR_1g013180 49.296 71 35 1 211 281 337 406 3.00e-11 65.9
MS.gene024551.t1 MTR_7g089010 53.704 54 24 1 216 269 91 143 4.82e-11 63.9
MS.gene024551.t1 MTR_5g017980 57.895 57 23 1 213 269 190 245 8.71e-11 63.5
MS.gene024551.t1 MTR_1g093080 56.863 51 22 0 216 266 211 261 8.99e-11 62.8
MS.gene024551.t1 MTR_5g017980 57.895 57 23 1 213 269 189 244 9.31e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024551.t1 AT5G29000 45.789 380 169 9 3 360 14 378 1.40e-87 273
MS.gene024551.t1 AT5G29000 47.198 339 140 7 52 360 6 335 2.76e-84 263
MS.gene024551.t1 AT5G29000 47.198 339 140 7 52 360 6 335 2.76e-84 263
MS.gene024551.t1 AT3G04450 49.175 303 121 8 93 377 71 358 3.02e-79 251
MS.gene024551.t1 AT3G04450 49.175 303 121 8 93 377 71 358 3.02e-79 251
MS.gene024551.t1 AT3G04450 49.175 303 121 8 93 377 111 398 1.01e-78 251
MS.gene024551.t1 AT4G28610 52.778 252 106 10 106 345 105 355 1.10e-71 232
MS.gene024551.t1 AT2G20400 39.701 335 155 10 44 345 40 360 1.12e-51 179
MS.gene024551.t1 AT2G20400 39.881 336 154 11 44 345 40 361 1.48e-50 176
MS.gene024551.t1 AT2G01060 48.603 179 86 2 215 392 14 187 1.46e-48 167
MS.gene024551.t1 AT5G29000 39.203 301 149 8 3 284 14 299 5.30e-47 164
MS.gene024551.t1 AT3G13040 50.000 196 81 3 208 386 233 428 2.21e-46 166
MS.gene024551.t1 AT3G13040 50.000 196 81 3 208 386 233 428 2.21e-46 166
MS.gene024551.t1 AT3G13040 50.000 196 81 3 208 386 233 428 2.21e-46 166
MS.gene024551.t1 AT5G06800 49.405 168 79 2 185 347 156 322 4.68e-46 164
MS.gene024551.t1 AT5G06800 48.256 172 80 2 185 347 156 327 3.47e-45 161
MS.gene024551.t1 AT3G04450 45.320 203 89 5 93 282 111 304 3.65e-44 157
MS.gene024551.t1 AT3G24120 44.444 171 83 3 204 362 29 199 9.81e-40 144
MS.gene024551.t1 AT4G13640 51.408 142 55 3 216 344 37 177 2.13e-39 144
MS.gene024551.t1 AT3G24120 43.678 174 83 4 204 362 29 202 8.55e-38 139
MS.gene024551.t1 AT4G13640 50.345 145 55 4 216 344 37 180 2.33e-37 138
MS.gene024551.t1 AT1G69580 43.750 160 73 1 205 347 23 182 1.33e-36 137
MS.gene024551.t1 AT3G04030 39.773 176 91 2 204 364 33 208 2.72e-36 137
MS.gene024551.t1 AT1G69580 44.099 161 72 4 205 347 23 183 3.26e-35 133
MS.gene024551.t1 AT5G18240 45.570 158 62 4 212 349 41 194 9.31e-35 134
MS.gene024551.t1 AT5G18240 45.570 158 62 4 212 349 41 194 9.31e-35 134
MS.gene024551.t1 AT1G79430 43.791 153 77 3 201 347 19 168 1.87e-34 132
MS.gene024551.t1 AT5G45580 34.043 235 123 3 216 432 23 243 3.53e-34 129
MS.gene024551.t1 AT5G45580 34.043 235 123 3 216 432 7 227 3.56e-34 129
MS.gene024551.t1 AT3G04030 38.636 176 92 3 204 364 33 207 2.30e-33 129
MS.gene024551.t1 AT5G18240 44.937 158 61 5 212 349 41 192 7.70e-32 125
MS.gene024551.t1 AT3G04030 37.500 176 89 3 204 364 33 202 8.07e-31 122
MS.gene024551.t1 AT2G01060 44.755 143 73 2 251 392 1 138 5.07e-30 117
MS.gene024551.t1 AT5G18240 43.038 158 60 5 212 349 41 188 2.32e-29 119
MS.gene024551.t1 AT5G18240 43.038 158 60 5 212 349 41 188 2.32e-29 119
MS.gene024551.t1 AT3G12730 40.876 137 73 1 216 344 23 159 9.36e-29 113
MS.gene024551.t1 AT5G06800 49.020 102 47 1 185 281 156 257 8.97e-24 100
MS.gene024551.t1 AT4G04605 56.522 69 30 0 217 285 15 83 2.86e-19 86.7
MS.gene024551.t1 AT1G14600 67.857 56 18 0 217 272 24 79 4.15e-19 87.0
MS.gene024551.t1 AT2G42660 59.016 61 25 0 217 277 51 111 7.12e-19 86.3
MS.gene024551.t1 AT5G42630 66.071 56 19 0 217 272 106 161 7.11e-18 82.8
MS.gene024551.t1 AT2G40260 54.321 81 34 2 200 280 67 144 7.13e-18 85.5
MS.gene024551.t1 AT5G42630 66.071 56 19 0 217 272 106 161 1.40e-17 83.2
MS.gene024551.t1 AT2G02060 66.038 53 18 0 217 269 30 82 1.74e-17 82.4
MS.gene024551.t1 AT2G02060 66.038 53 18 0 217 269 30 82 1.74e-17 82.4
MS.gene024551.t1 AT2G38300 60.714 56 22 0 217 272 55 110 4.56e-17 82.4
MS.gene024551.t1 AT1G79430 41.509 106 53 3 248 347 1 103 5.20e-17 81.6
MS.gene024551.t1 AT4G17695 64.286 56 20 0 217 272 165 220 9.52e-17 81.3
MS.gene024551.t1 AT3G04030 35.606 132 70 2 248 364 1 132 1.21e-16 80.9
MS.gene024551.t1 AT1G32240 61.667 60 23 0 213 272 210 269 1.27e-16 81.6
MS.gene024551.t1 AT1G32240 61.667 60 23 0 213 272 210 269 1.57e-16 81.3
MS.gene024551.t1 AT5G16560 61.667 60 23 0 213 272 216 275 1.87e-16 81.3
MS.gene024551.t1 AT2G06020 55.738 61 27 0 212 272 82 142 4.83e-16 79.0
MS.gene024551.t1 AT4G04580 38.776 98 58 1 217 312 15 112 1.15e-15 75.1
MS.gene024551.t1 AT1G25550 56.061 66 29 0 213 278 206 271 6.09e-15 76.3
MS.gene024551.t1 AT2G03500 50.000 76 38 0 207 282 224 299 3.52e-14 74.7
MS.gene024551.t1 AT3G16857 68.519 54 16 1 216 269 167 219 9.72e-14 73.6
MS.gene024551.t1 AT3G16857 68.519 54 16 1 216 269 237 289 1.08e-13 73.6
MS.gene024551.t1 AT3G16857 68.519 54 16 1 216 269 237 289 1.11e-13 73.6
MS.gene024551.t1 AT4G37180 47.500 80 41 1 203 281 197 276 1.50e-13 72.0
MS.gene024551.t1 AT4G37180 47.500 80 41 1 203 281 204 283 1.56e-13 72.0
MS.gene024551.t1 AT3G62670 51.389 72 31 1 216 283 211 282 3.11e-13 71.6
MS.gene024551.t1 AT5G58080 56.667 60 25 1 210 269 188 246 4.04e-13 71.6
MS.gene024551.t1 AT1G68670 56.667 60 26 0 216 275 215 274 8.43e-13 69.7
MS.gene024551.t1 AT5G59570 52.459 61 28 1 209 269 134 193 1.06e-12 68.9
MS.gene024551.t1 AT5G59570 52.459 61 28 1 209 269 134 193 1.06e-12 68.9
MS.gene024551.t1 AT2G25180 59.322 59 23 1 211 269 190 247 1.61e-12 69.7
MS.gene024551.t1 AT5G44190 54.237 59 26 1 214 272 145 202 1.68e-12 69.3
MS.gene024551.t1 AT5G44190 54.237 59 26 1 214 272 145 202 1.82e-12 68.9
MS.gene024551.t1 AT2G40970 42.667 75 42 1 195 269 84 157 5.69e-12 65.9
MS.gene024551.t1 AT2G20570 38.947 95 52 2 213 302 150 243 5.75e-12 67.8
MS.gene024551.t1 AT4G31920 53.226 62 28 1 213 274 180 240 6.23e-12 67.8
MS.gene024551.t1 AT1G49560 55.385 65 29 0 216 280 192 256 6.40e-12 67.0
MS.gene024551.t1 AT3G46640 55.556 54 23 1 216 269 144 196 7.28e-12 66.6
MS.gene024551.t1 AT4G04555 49.180 61 30 1 217 277 15 74 7.31e-12 62.4
MS.gene024551.t1 AT3G46640 55.556 54 23 1 216 269 144 196 7.99e-12 66.6
MS.gene024551.t1 AT3G46640 55.556 54 23 1 216 269 144 196 7.99e-12 66.6
MS.gene024551.t1 AT3G04030 32.576 132 68 3 248 364 1 126 9.93e-12 66.2
MS.gene024551.t1 AT1G67710 53.968 63 29 0 218 280 121 183 1.10e-11 67.0
MS.gene024551.t1 AT2G20570 40.000 90 48 2 218 302 171 259 1.14e-11 66.6
MS.gene024551.t1 AT1G25550 59.259 54 22 0 213 266 206 259 1.14e-11 65.5
MS.gene024551.t1 AT1G67710 53.968 63 29 0 218 280 130 192 1.34e-11 66.6
MS.gene024551.t1 AT5G05090 53.704 54 24 1 216 269 81 133 1.37e-11 65.1
MS.gene024551.t1 AT1G67710 53.968 63 29 0 218 280 195 257 1.41e-11 66.6
MS.gene024551.t1 AT3G12730 32.381 105 63 1 248 344 1 105 2.02e-11 63.2
MS.gene024551.t1 AT3G10760 53.704 54 24 1 216 269 105 157 2.21e-11 65.5
MS.gene024551.t1 AT3G25790 36.090 133 72 3 152 275 127 255 2.38e-11 65.5
MS.gene024551.t1 AT2G01760 43.902 82 43 2 216 295 135 215 3.71e-11 64.3
MS.gene024551.t1 AT2G01760 43.902 82 43 2 216 295 200 280 4.16e-11 64.7
MS.gene024551.t1 AT2G01760 43.902 82 43 2 216 295 228 308 5.88e-11 64.3
MS.gene024551.t1 AT1G49190 46.377 69 34 1 216 281 215 283 6.60e-11 64.3
MS.gene024551.t1 AT4G37180 48.438 64 33 0 203 266 197 260 6.94e-11 63.2
MS.gene024551.t1 AT5G18240 36.441 118 53 5 248 349 1 112 8.75e-11 63.5

Find 95 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGTTCTTCCCAGTCTTA+TGG 0.207188 7.3:-2050466 MS.gene024551:CDS
CTTTCTCCAGGTATGTCTTT+AGG 0.231387 7.3:+2047790 None:intergenic
CCAAGAAGCTGACTCCAATT+TGG 0.256047 7.3:+2049988 None:intergenic
ATTAGATTCAAGACACCTTT+TGG 0.275565 7.3:+2049318 None:intergenic
ATGATTCTGTTAATCCAAAT+TGG 0.276239 7.3:-2050002 MS.gene024551:CDS
TCTGGACTCCAACGCATTCT+AGG 0.278668 7.3:+2049486 None:intergenic
TGGTGACTCAGGTTTGTATC+TGG 0.307622 7.3:+2049120 None:intergenic
CCAAATTGGAGTCAGCTTCT+TGG 0.308074 7.3:-2049988 MS.gene024551:CDS
GATCCATTGCCAGATATTCT+TGG 0.312892 7.3:-2050144 MS.gene024551:CDS
CCCTTCGCTTCTCAGGCATT+AGG 0.349271 7.3:-2050246 MS.gene024551:CDS
TCAGGAAAACCAAGAATATC+TGG 0.353256 7.3:+2050135 None:intergenic
AGATTCTCCCTTCGCTTCTC+AGG 0.383362 7.3:-2050253 MS.gene024551:CDS
ACAAAAGCTTCGTGAAGTTC+TGG 0.384632 7.3:+2049468 None:intergenic
TGCTGTGAAACGGGAGGAAA+AGG 0.393018 7.3:+2050291 None:intergenic
CTCCCGTTTCACAGCATGAT+AGG 0.396353 7.3:-2050284 MS.gene024551:CDS
GAATTATGGTTACAGGAGTA+AGG 0.405297 7.3:-2048157 MS.gene024551:intron
CAGAAGCAGCATACACCATC+TGG 0.414147 7.3:-2049570 MS.gene024551:CDS
TCCATAAGACTGGGAAGAAC+AGG 0.416578 7.3:+2050465 None:intergenic
AATTGAGGAAATGAAATCTC+TGG 0.418669 7.3:-2048267 MS.gene024551:CDS
ATAATTGCTTTCCATAAGAC+TGG 0.420183 7.3:+2050455 None:intergenic
TGCCTATCATGCTGTGAAAC+GGG 0.423721 7.3:+2050282 None:intergenic
GGAGGAAAAGGGACGCCGCC+AGG 0.438286 7.3:+2050303 None:intergenic
TTTGCTTTCTGCTTACATCA+TGG 0.449248 7.3:+2047764 None:intergenic
AAAGATGAACGGGATAAATC+AGG 0.451170 7.3:-2047829 MS.gene024551:CDS
ATCTACCCTCTCATGTTCAT+TGG 0.454358 7.3:+2047720 None:intergenic
TGTTGTTGAACCAACACAAC+AGG 0.455318 7.3:-2049956 MS.gene024551:intron
TTGCTTTCTGCTTACATCAT+GGG 0.456687 7.3:+2047765 None:intergenic
AGAATATCTGGCAATGGATC+TGG 0.459308 7.3:+2050147 None:intergenic
TGCACCTTCTGCTGCAGTGT+TGG 0.460592 7.3:-2047896 MS.gene024551:CDS
GTTGATGCTGATGCTGAAGC+TGG 0.462318 7.3:+2049525 None:intergenic
GGTGAACGATGAAAAGAATC+CGG 0.468237 7.3:+2050423 None:intergenic
ACATCATGGGAACTTTCTCC+AGG 0.474455 7.3:+2047778 None:intergenic
TGTATACCTTCTGGTGACTC+AGG 0.476063 7.3:+2049109 None:intergenic
TTGCCTATCATGCTGTGAAA+CGG 0.481947 7.3:+2050281 None:intergenic
TCATCTCAAGATGTTTCCCT+TGG 0.484323 7.3:+2047971 None:intergenic
TCAACCAATGATGAATGTCC+TGG 0.485207 7.3:-2050321 MS.gene024551:CDS
CACGACGCCACCTTCTTCTC+CGG 0.487049 7.3:-2047872 MS.gene024551:CDS
ATTAGGTGACAATGTGTCTT+CGG 0.494529 7.3:-2050229 MS.gene024551:CDS
CATGCAGAGGCTACTCCAAA+AGG 0.496159 7.3:-2049333 MS.gene024551:intron
TGATGTAAGCAGAAAGCAAA+TGG 0.496266 7.3:-2047761 MS.gene024551:CDS
TTTGAGAAACAGAAACAGAT+AGG 0.496976 7.3:-2047946 MS.gene024551:CDS
CAGCAGAAGGTGCATTTGAA+GGG 0.498153 7.3:+2047905 None:intergenic
AGGGAATCACTGAAGCATTA+CGG 0.500945 7.3:-2048137 MS.gene024551:CDS
GCCGCCAGGACATTCATCAT+TGG 0.501664 7.3:+2050317 None:intergenic
GCAGCAGAAGGTGCATTTGA+AGG 0.504283 7.3:+2047904 None:intergenic
AAATTGTCCACCGGAGAAGA+AGG 0.507969 7.3:+2047862 None:intergenic
GTGAACGATGAAAAGAATCC+GGG 0.513629 7.3:+2050424 None:intergenic
TCCATATATGAACCTGGAGG+TGG 0.532203 7.3:+2049259 None:intergenic
GAAGGTGCATTTGAAGGGGA+AGG 0.532963 7.3:+2047910 None:intergenic
AAACTAAGCCTAGAATGCGT+TGG 0.536261 7.3:-2049494 MS.gene024551:CDS
ACCTAATGCCTGAGAAGCGA+AGG 0.539904 7.3:+2050245 None:intergenic
TACTCTCACTACCACCAAGC+TGG 0.543524 7.3:+2049433 None:intergenic
AGAAAATGATGATATATCGT+GGG 0.544394 7.3:-2050172 MS.gene024551:CDS
GTGGAAGCAGTCAACCAGCT+TGG 0.551472 7.3:-2049447 MS.gene024551:CDS
GATGTAGCTTGCAATGAGGC+AGG 0.552385 7.3:+2050378 None:intergenic
GAGAAACAAACCTGTTGTGT+TGG 0.559790 7.3:+2049946 None:intergenic
AATTATGGTTACAGGAGTAA+GGG 0.560396 7.3:-2048156 MS.gene024551:intron
AAGAAAATGATGATATATCG+TGG 0.571936 7.3:-2050173 MS.gene024551:CDS
TGAAGCATTACGGTTGCAGA+TGG 0.573866 7.3:-2048127 MS.gene024551:CDS
TTGAATCTAATGAATGTTGA+GGG 0.574014 7.3:-2049306 MS.gene024551:CDS
CAGATTCAAATTGAAAACCA+AGG 0.574230 7.3:-2047988 MS.gene024551:CDS
TTCTGTCCAGCATGATCAGG+TGG 0.575982 7.3:-2050106 MS.gene024551:CDS
TTTGCTGTCAGACCCCTGAC+AGG 0.580082 7.3:+2050402 None:intergenic
AAACCAAGAATATCTGGCAA+TGG 0.585936 7.3:+2050141 None:intergenic
TAATTGTTATACAGATTCAA+AGG 0.586802 7.3:-2048017 MS.gene024551:intron
GACGCCACCTTCTTCTCCGG+TGG 0.587703 7.3:-2047869 MS.gene024551:CDS
TTTCATCGTTCACCTGTCAG+GGG 0.589580 7.3:-2050414 MS.gene024551:CDS
GAAGCAGTCAACCAGCTTGG+TGG 0.594269 7.3:-2049444 MS.gene024551:CDS
GCTGTGAAACGGGAGGAAAA+GGG 0.594959 7.3:+2050292 None:intergenic
AGATTCAAATTGAAAACCAA+GGG 0.608265 7.3:-2047987 MS.gene024551:CDS
AGAACAGGTGAAGACGAAGA+AGG 0.608881 7.3:+2050480 None:intergenic
AGGTGAAGACGAAGAAGGCA+TGG 0.611132 7.3:+2050485 None:intergenic
TAATTGCTTTCCATAAGACT+GGG 0.614268 7.3:+2050456 None:intergenic
GTGTCCAACACTGCAGCAGA+AGG 0.618637 7.3:+2047892 None:intergenic
AAGTTACCAATGAACATGAG+AGG 0.619833 7.3:-2047726 MS.gene024551:CDS
GCGACTTCATGAACAACTTG+AGG 0.620878 7.3:-2048094 MS.gene024551:intron
TCATCATTGGTTGAAAACAC+AGG 0.621388 7.3:+2050330 None:intergenic
AAGCAATTATATGAAACCCC+CGG 0.622265 7.3:-2050442 MS.gene024551:CDS
CTTGAATCTAATGAATGTTG+AGG 0.622537 7.3:-2049307 MS.gene024551:CDS
AAGGTGCATTTGAAGGGGAA+GGG 0.624076 7.3:+2047911 None:intergenic
GACATTCCTAAAGACATACC+TGG 0.630421 7.3:-2047796 MS.gene024551:CDS
AGTTACCAATGAACATGAGA+GGG 0.634728 7.3:-2047725 MS.gene024551:CDS
AGCAGAAGGTGCATTTGAAG+GGG 0.635905 7.3:+2047906 None:intergenic
ACAGGTCGAACACTTCTGAT+CGG 0.639592 7.3:+2050348 None:intergenic
AGATTGTTGACTTCTCCAGA+TGG 0.656610 7.3:+2049555 None:intergenic
CGATGATGTAGCTTGCAATG+AGG 0.659256 7.3:+2050374 None:intergenic
GAAAATGATGATATATCGTG+GGG 0.660394 7.3:-2050171 MS.gene024551:CDS
TACAAACCTGAGTCACCAGA+AGG 0.662240 7.3:-2049115 MS.gene024551:intron
CTATCATGCTGTGAAACGGG+AGG 0.666909 7.3:+2050285 None:intergenic
TTGTCCACCGGAGAAGAAGG+TGG 0.671117 7.3:+2047865 None:intergenic
TGAACGATGAAAAGAATCCG+GGG 0.672098 7.3:+2050425 None:intergenic
CCTAATGCCTGAGAAGCGAA+GGG 0.672541 7.3:+2050246 None:intergenic
ACCAATGATGAATGTCCTGG+CGG 0.684026 7.3:-2050318 MS.gene024551:CDS
GAGAAGTGAATGTTGCTGAG+TGG 0.714972 7.3:+2050202 None:intergenic
GAACGATGAAAAGAATCCGG+GGG 0.737762 7.3:+2050426 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTCACAAAATATTAA+AGG + chr7.3:2049795-2049814 None:intergenic 10.0%
!! TAATAATGTTTACTAATAGT+AGG - chr7.3:2049757-2049776 MS.gene024551:intron 15.0%
!! TACTATTAGTAAACATTATT+AGG + chr7.3:2049758-2049777 None:intergenic 15.0%
!! TCGAATAAATAATAATAGAA+TGG + chr7.3:2048419-2048438 None:intergenic 15.0%
!!! ACTTTTGAAGTTTTAAATAA+AGG + chr7.3:2049368-2049387 None:intergenic 15.0%
!!! GTTTTAAATAAAGGAATAAT+TGG + chr7.3:2049359-2049378 None:intergenic 15.0%
!!! TTATATTTGTTAAAGTGAAA+AGG - chr7.3:2049296-2049315 MS.gene024551:CDS 15.0%
!!! TTCTATTATATTTCTATGTT+TGG + chr7.3:2049504-2049523 None:intergenic 15.0%
!! TAAAAACTTCAAAAGATGAA+CGG - chr7.3:2050315-2050334 MS.gene024551:CDS 20.0%
!! TAATTGTTATACAGATTCAA+AGG - chr7.3:2050138-2050157 MS.gene024551:CDS 20.0%
!! TCTATTATTATTTATTCGAG+AGG - chr7.3:2048420-2048439 MS.gene024551:intron 20.0%
!! TTCAAATGTAACAAGAATAA+GGG + chr7.3:2049438-2049457 None:intergenic 20.0%
!!! AATATTAAAGGAGTTTTGTT+AGG + chr7.3:2049783-2049802 None:intergenic 20.0%
!!! AATGTCAAAAAAACTGATTT+TGG - chr7.3:2048101-2048120 MS.gene024551:CDS 20.0%
!!! ATATATCATCATTTTCTTGA+AGG + chr7.3:2047980-2047999 None:intergenic 20.0%
!!! ATGTCAAAAAAACTGATTTT+GGG - chr7.3:2048102-2048121 MS.gene024551:CDS 20.0%
!!! CAAAAGACCATTTTAAAAAT+AGG - chr7.3:2049264-2049283 MS.gene024551:intron 20.0%
!!! GATTGTTCCTATTTTTAAAA+TGG + chr7.3:2049274-2049293 None:intergenic 20.0%
! AAAAACTTCAAAAGATGAAC+GGG - chr7.3:2050316-2050335 MS.gene024551:CDS 25.0%
! AAGAAAATGATGATATATCG+TGG - chr7.3:2047982-2048001 MS.gene024551:CDS 25.0%
! AGAAAATGATGATATATCGT+GGG - chr7.3:2047983-2048002 MS.gene024551:CDS 25.0%
! AGATTCAAATTGAAAACCAA+GGG - chr7.3:2050168-2050187 MS.gene024551:CDS 25.0%
! ATAGAATACGATTACACAAT+AGG - chr7.3:2049549-2049568 MS.gene024551:CDS 25.0%
! ATGATTCTGTTAATCCAAAT+TGG - chr7.3:2048153-2048172 MS.gene024551:intron 25.0%
! CACATCCACAAAAAAAAAAT+TGG + chr7.3:2049118-2049137 None:intergenic 25.0%
! CACATTAATGTAATAATTGC+TGG - chr7.3:2049714-2049733 MS.gene024551:intron 25.0%
! CTTCAAATGTAACAAGAATA+AGG + chr7.3:2049439-2049458 None:intergenic 25.0%
! GGATTGATAAAAAGAAGATA+TGG - chr7.3:2049233-2049252 MS.gene024551:intron 25.0%
! GTTAATAGAAATGAAAACCT+AGG + chr7.3:2048382-2048401 None:intergenic 25.0%
! TATAAGAGTAAGAATGTGAA+TGG - chr7.3:2049812-2049831 MS.gene024551:intron 25.0%
! TCAAATGTAACAAGAATAAG+GGG + chr7.3:2049437-2049456 None:intergenic 25.0%
! TTGAATCTAATGAATGTTGA+GGG - chr7.3:2048849-2048868 MS.gene024551:intron 25.0%
! TTTGTTAAAGTGAAAAGGAA+AGG - chr7.3:2049301-2049320 MS.gene024551:CDS 25.0%
!! ACATTATTGTTATTATCACC+CGG - chr7.3:2050085-2050104 MS.gene024551:CDS 25.0%
!!! ATTTTTTTTTTGTGGATGTG+TGG - chr7.3:2049118-2049137 MS.gene024551:CDS 25.0%
!!! TCTATTTTTCTCTCATTCAA+AGG - chr7.3:2049391-2049410 MS.gene024551:intron 25.0%
!!! TGCTACCAATTTTTTTTTTG+TGG - chr7.3:2049110-2049129 MS.gene024551:intron 25.0%
!!! TGTCAAAAAAACTGATTTTG+GGG - chr7.3:2048103-2048122 MS.gene024551:CDS 25.0%
AAATGTAACAAGAATAAGGG+GGG + chr7.3:2049435-2049454 None:intergenic 30.0%
AACCTGCTGTATAAAACAAT+AGG + chr7.3:2049089-2049108 None:intergenic 30.0%
AATTATGGTTACAGGAGTAA+GGG - chr7.3:2049999-2050018 MS.gene024551:CDS 30.0%
AATTGAGGAAATGAAATCTC+TGG - chr7.3:2049888-2049907 MS.gene024551:intron 30.0%
ACATCTTTCTCGAAACTATA+AGG + chr7.3:2049154-2049173 None:intergenic 30.0%
ACCATAATTCAAGGAAACAA+TGG + chr7.3:2049988-2050007 None:intergenic 30.0%
ACCTGCTGTATAAAACAATA+GGG + chr7.3:2049088-2049107 None:intergenic 30.0%
AGGCAGTTACTAGATAAATA+GGG + chr7.3:2049660-2049679 None:intergenic 30.0%
ATAATGATGTTAACATGCAG+AGG - chr7.3:2048809-2048828 MS.gene024551:intron 30.0%
ATAATTGCTTTCCATAAGAC+TGG + chr7.3:2047703-2047722 None:intergenic 30.0%
ATGTGCAACAGTTATGTATT+AGG + chr7.3:2049699-2049718 None:intergenic 30.0%
CAAATGTAACAAGAATAAGG+GGG + chr7.3:2049436-2049455 None:intergenic 30.0%
CAGATTCAAATTGAAAACCA+AGG - chr7.3:2050167-2050186 MS.gene024551:CDS 30.0%
CATCTTTCTCGAAACTATAA+GGG + chr7.3:2049153-2049172 None:intergenic 30.0%
CTTGAATCTAATGAATGTTG+AGG - chr7.3:2048848-2048867 MS.gene024551:intron 30.0%
GAAAAAGATGAGTTCAATTG+AGG - chr7.3:2049873-2049892 MS.gene024551:intron 30.0%
GAAAATGATGATATATCGTG+GGG - chr7.3:2047984-2048003 MS.gene024551:CDS 30.0%
TAATTGCTTTCCATAAGACT+GGG + chr7.3:2047702-2047721 None:intergenic 30.0%
TAGAACTGATCATCCAAATA+TGG + chr7.3:2048451-2048470 None:intergenic 30.0%
TAGATAAATAGGGAATCTGA+AGG + chr7.3:2049650-2049669 None:intergenic 30.0%
TAGGCAGTTACTAGATAAAT+AGG + chr7.3:2049661-2049680 None:intergenic 30.0%
TCCATTGTTTCCTTGAATTA+TGG - chr7.3:2049984-2050003 MS.gene024551:CDS 30.0%
TTTCCTTGAATTATGGTTAC+AGG - chr7.3:2049991-2050010 MS.gene024551:CDS 30.0%
TTTGAGAAACAGAAACAGAT+AGG - chr7.3:2050209-2050228 MS.gene024551:CDS 30.0%
! ATTAGATTCAAGACACCTTT+TGG + chr7.3:2048840-2048859 None:intergenic 30.0%
! CTTTTTATCAATCCCAACAT+AGG + chr7.3:2049227-2049246 None:intergenic 30.0%
! GAAGTTTTTAAATTGTCCAC+CGG + chr7.3:2050305-2050324 None:intergenic 30.0%
! TATATTTCTATGTTTGGTCC+TGG + chr7.3:2049498-2049517 None:intergenic 30.0%
! TTTTTACATGGTAGATGGTA+AGG + chr7.3:2048875-2048894 None:intergenic 30.0%
AAACCAAGAATATCTGGCAA+TGG + chr7.3:2048017-2048036 None:intergenic 35.0%
AAAGATGAACGGGATAAATC+AGG - chr7.3:2050326-2050345 MS.gene024551:CDS 35.0%
AAATCCATATATGAACCTGG+AGG + chr7.3:2048902-2048921 None:intergenic 35.0%
AAGCAATTATATGAAACCCC+CGG - chr7.3:2047713-2047732 MS.gene024551:CDS 35.0%
AAGTTACCAATGAACATGAG+AGG - chr7.3:2050429-2050448 MS.gene024551:CDS 35.0%
AATGTAACAAGAATAAGGGG+GGG + chr7.3:2049434-2049453 None:intergenic 35.0%
ACAAGCTCAATTTAAGAGGA+CGG + chr7.3:2048926-2048945 None:intergenic 35.0%
ACCAACAAGCTCAATTTAAG+AGG + chr7.3:2048930-2048949 None:intergenic 35.0%
ACTCCTGTAACCATAATTCA+AGG + chr7.3:2049997-2050016 None:intergenic 35.0%
ACTTGAACAAGAACAATCCT+AGG - chr7.3:2048251-2048270 MS.gene024551:intron 35.0%
AGTTACCAATGAACATGAGA+GGG - chr7.3:2050430-2050449 MS.gene024551:CDS 35.0%
ATAAAAATCGACATACACGC+CGG + chr7.3:2048960-2048979 None:intergenic 35.0%
ATACAACCTAAAGGGGAATA+GGG + chr7.3:2048513-2048532 None:intergenic 35.0%
ATTAGGTGACAATGTGTCTT+CGG - chr7.3:2047926-2047945 MS.gene024551:CDS 35.0%
GAATTATGGTTACAGGAGTA+AGG - chr7.3:2049998-2050017 MS.gene024551:CDS 35.0%
GGAAAATCCATATATGAACC+TGG + chr7.3:2048905-2048924 None:intergenic 35.0%
TAGAAATGAAAACCTAGGTG+AGG + chr7.3:2048377-2048396 None:intergenic 35.0%
TAGGAAGCAGTTATGTTTCT+AGG + chr7.3:2049680-2049699 None:intergenic 35.0%
TCAGGAAAACCAAGAATATC+TGG + chr7.3:2048023-2048042 None:intergenic 35.0%
TCCTCTTAAATTGAGCTTGT+TGG - chr7.3:2048926-2048945 MS.gene024551:intron 35.0%
TCGAGAGGAAAATCCATATT+TGG - chr7.3:2048435-2048454 MS.gene024551:intron 35.0%
TCTTCTTCATGTCCTATGTT+GGG - chr7.3:2049212-2049231 MS.gene024551:intron 35.0%
TGATGTAAGCAGAAAGCAAA+TGG - chr7.3:2050394-2050413 MS.gene024551:CDS 35.0%
TGCTGGACAGAAAAAATTTC+AGG + chr7.3:2048041-2048060 None:intergenic 35.0%
TTCTTCTTCATGTCCTATGT+TGG - chr7.3:2049211-2049230 MS.gene024551:intron 35.0%
TTGCTTTCTGCTTACATCAT+GGG + chr7.3:2050393-2050412 None:intergenic 35.0%
TTTGCTTTCTGCTTACATCA+TGG + chr7.3:2050394-2050413 None:intergenic 35.0%
! TCATCATTGGTTGAAAACAC+AGG + chr7.3:2047828-2047847 None:intergenic 35.0%
! TTTTTCTCAGAAGTTTCTGC+AGG + chr7.3:2049859-2049878 None:intergenic 35.0%
!! AAAAAACTGATTTTGGGGAG+TGG - chr7.3:2048108-2048127 MS.gene024551:CDS 35.0%
!! AAAAACTGATTTTGGGGAGT+GGG - chr7.3:2048109-2048128 MS.gene024551:CDS 35.0%
!! ATATCCTACTTTTCTGATGC+AGG - chr7.3:2048548-2048567 MS.gene024551:intron 35.0%
!! TCCCTATTGTTTTATACAGC+AGG - chr7.3:2049084-2049103 MS.gene024551:intron 35.0%
AAACTAAGCCTAGAATGCGT+TGG - chr7.3:2048661-2048680 MS.gene024551:intron 40.0%
AAATGAAAACCTAGGTGAGG+AGG + chr7.3:2048374-2048393 None:intergenic 40.0%
ACAAAAGCTTCGTGAAGTTC+TGG + chr7.3:2048690-2048709 None:intergenic 40.0%
AGAATATCTGGCAATGGATC+TGG + chr7.3:2048011-2048030 None:intergenic 40.0%
AGGTAAGTAAAGTTTGGCCT+AGG + chr7.3:2048271-2048290 None:intergenic 40.0%
ATCTACCCTCTCATGTTCAT+TGG + chr7.3:2050438-2050457 None:intergenic 40.0%
ATGCCAAAACTTCGAAGTTC+CGG + chr7.3:2050107-2050126 None:intergenic 40.0%
CACAGAAACTTGATGAAACC+AGG - chr7.3:2049477-2049496 MS.gene024551:CDS 40.0%
CATACAACCTAAAGGGGAAT+AGG + chr7.3:2048514-2048533 None:intergenic 40.0%
CTTTCTCCAGGTATGTCTTT+AGG + chr7.3:2050368-2050387 None:intergenic 40.0%
GAAGAAACGTTCATGAGAGA+AGG + chr7.3:2048782-2048801 None:intergenic 40.0%
GACATTCCTAAAGACATACC+TGG - chr7.3:2050359-2050378 MS.gene024551:CDS 40.0%
GAGAAACAAACCTGTTGTGT+TGG + chr7.3:2048212-2048231 None:intergenic 40.0%
GATCCATTGCCAGATATTCT+TGG - chr7.3:2048011-2048030 MS.gene024551:intron 40.0%
GGATTGTTCTTGTTCAAGTC+AGG + chr7.3:2048250-2048269 None:intergenic 40.0%
GGGAATGAACTATATGCACA+TGG + chr7.3:2048493-2048512 None:intergenic 40.0%
GGTGAACGATGAAAAGAATC+CGG + chr7.3:2047735-2047754 None:intergenic 40.0%
GTACACTCTTGTATACCTTC+TGG + chr7.3:2049058-2049077 None:intergenic 40.0%
GTCAAACGAAGGATGAGATT+AGG + chr7.3:2048760-2048779 None:intergenic 40.0%
GTGAACGATGAAAAGAATCC+GGG + chr7.3:2047734-2047753 None:intergenic 40.0%
TCAACCAATGATGAATGTCC+TGG - chr7.3:2047834-2047853 MS.gene024551:CDS 40.0%
TCATCTCAAGATGTTTCCCT+TGG + chr7.3:2050187-2050206 None:intergenic 40.0%
TGAACGATGAAAAGAATCCG+GGG + chr7.3:2047733-2047752 None:intergenic 40.0%
TGTTGTTGAACCAACACAAC+AGG - chr7.3:2048199-2048218 MS.gene024551:intron 40.0%
TTCATTCCCTATTCCCCTTT+AGG - chr7.3:2048504-2048523 MS.gene024551:intron 40.0%
TTGCCTATCATGCTGTGAAA+CGG + chr7.3:2047877-2047896 None:intergenic 40.0%
! AGAACTTCACGAAGCTTTTG+TGG - chr7.3:2048689-2048708 MS.gene024551:intron 40.0%
! AGGGAATCACTGAAGCATTA+CGG - chr7.3:2050018-2050037 MS.gene024551:CDS 40.0%
! GTGGCTTTTTACATGGTAGA+TGG + chr7.3:2048880-2048899 None:intergenic 40.0%
! TGAATCTTCGCTCGTTTTGT+TGG + chr7.3:2050482-2050501 None:intergenic 40.0%
! TTTTCATCGTTCACCTGTCA+GGG - chr7.3:2047740-2047759 MS.gene024551:CDS 40.0%
! TTTTTCTGTCCAGCATGATC+AGG - chr7.3:2048046-2048065 MS.gene024551:intron 40.0%
!! AGATTGTTGACTTCTCCAGA+TGG + chr7.3:2048603-2048622 None:intergenic 40.0%
!! ATTCCCCTTTAGGTTGTATG+CGG - chr7.3:2048514-2048533 MS.gene024551:intron 40.0%
AAATTGTCCACCGGAGAAGA+AGG + chr7.3:2050296-2050315 None:intergenic 45.0%
AACAGCCGCATACAACCTAA+AGG + chr7.3:2048522-2048541 None:intergenic 45.0%
AAGGTGCATTTGAAGGGGAA+GGG + chr7.3:2050247-2050266 None:intergenic 45.0%
ACAGCCGCATACAACCTAAA+GGG + chr7.3:2048521-2048540 None:intergenic 45.0%
ACAGGTCGAACACTTCTGAT+CGG + chr7.3:2047810-2047829 None:intergenic 45.0%
ACATCATGGGAACTTTCTCC+AGG + chr7.3:2050380-2050399 None:intergenic 45.0%
ACCAATGATGAATGTCCTGG+CGG - chr7.3:2047837-2047856 MS.gene024551:CDS 45.0%
ACCTGTTCTTCCCAGTCTTA+TGG - chr7.3:2047689-2047708 MS.gene024551:CDS 45.0%
AGAACAGGTGAAGACGAAGA+AGG + chr7.3:2047678-2047697 None:intergenic 45.0%
ATCGCCTGCATCAGAAAAGT+AGG + chr7.3:2048555-2048574 None:intergenic 45.0%
CATGAGAGAAGGTCAAACGA+AGG + chr7.3:2048771-2048790 None:intergenic 45.0%
CCAAATTGGAGTCAGCTTCT+TGG - chr7.3:2048167-2048186 MS.gene024551:intron 45.0%
CCAAGACTCTCGAATTCCTA+GGG + chr7.3:2049577-2049596 None:intergenic 45.0%
CCTAGGAATTCGAGAGTCTT+GGG - chr7.3:2049575-2049594 MS.gene024551:CDS 45.0%
GAACGATGAAAAGAATCCGG+GGG + chr7.3:2047732-2047751 None:intergenic 45.0%
GAGAAGTGAATGTTGCTGAG+TGG + chr7.3:2047956-2047975 None:intergenic 45.0%
GATTACACAATAGGCTCCCT+AGG - chr7.3:2049558-2049577 MS.gene024551:CDS 45.0%
GCGACTTCATGAACAACTTG+AGG - chr7.3:2050061-2050080 MS.gene024551:CDS 45.0%
GCTGGGAGGTAAGTAAAGTT+TGG + chr7.3:2048277-2048296 None:intergenic 45.0%
TACAAACCTGAGTCACCAGA+AGG - chr7.3:2049040-2049059 MS.gene024551:intron 45.0%
TCCATAAGACTGGGAAGAAC+AGG + chr7.3:2047693-2047712 None:intergenic 45.0%
TCCATATATGAACCTGGAGG+TGG + chr7.3:2048899-2048918 None:intergenic 45.0%
TCTTAAACCTCCAGCTCCTA+AGG + chr7.3:2048322-2048341 None:intergenic 45.0%
TGCCAAAACTTCGAAGTTCC+GGG + chr7.3:2050106-2050125 None:intergenic 45.0%
TGCCTATCATGCTGTGAAAC+GGG + chr7.3:2047876-2047895 None:intergenic 45.0%
TGGTGACTCAGGTTTGTATC+TGG + chr7.3:2049038-2049057 None:intergenic 45.0%
TGTATACCTTCTGGTGACTC+AGG + chr7.3:2049049-2049068 None:intergenic 45.0%
TTTCATCGTTCACCTGTCAG+GGG - chr7.3:2047741-2047760 MS.gene024551:CDS 45.0%
! AGCAGAAGGTGCATTTGAAG+GGG + chr7.3:2050252-2050271 None:intergenic 45.0%
! CAGCAGAAGGTGCATTTGAA+GGG + chr7.3:2050253-2050272 None:intergenic 45.0%
! CCAAGAAGCTGACTCCAATT+TGG + chr7.3:2048170-2048189 None:intergenic 45.0%
! CGATGATGTAGCTTGCAATG+AGG + chr7.3:2047784-2047803 None:intergenic 45.0%
! CTTTTCATCGTTCACCTGTC+AGG - chr7.3:2047739-2047758 MS.gene024551:CDS 45.0%
! TGAAGCATTACGGTTGCAGA+TGG - chr7.3:2050028-2050047 MS.gene024551:CDS 45.0%
! TGTTTTCCACCTGATCATGC+TGG + chr7.3:2048058-2048077 None:intergenic 45.0%
!! ATCTTCGCTCGTTTTGTTGG+AGG + chr7.3:2050479-2050498 None:intergenic 45.0%
ACCTAATGCCTGAGAAGCGA+AGG + chr7.3:2047913-2047932 None:intergenic 50.0%
AGACCAAGCCCTCGAATTCT+TGG + chr7.3:2049610-2049629 None:intergenic 50.0%
AGATTCTCCCTTCGCTTCTC+AGG - chr7.3:2047902-2047921 MS.gene024551:CDS 50.0%
CAAATGGGCCCTAGTGAGTT+CGG + chr7.3:2048299-2048318 None:intergenic 50.0%
CAAGCCCTCGAATTCTTGGA+GGG + chr7.3:2049606-2049625 None:intergenic 50.0%
CAGAAGCAGCATACACCATC+TGG - chr7.3:2048585-2048604 MS.gene024551:intron 50.0%
CAGCCGCATACAACCTAAAG+GGG + chr7.3:2048520-2048539 None:intergenic 50.0%
CATGCAGAGGCTACTCCAAA+AGG - chr7.3:2048822-2048841 MS.gene024551:intron 50.0%
CCATGTAAAAAGCCACCTCC+AGG - chr7.3:2048884-2048903 MS.gene024551:intron 50.0%
CCCAAGACTCTCGAATTCCT+AGG + chr7.3:2049578-2049597 None:intergenic 50.0%
CCCTAGGAATTCGAGAGTCT+TGG - chr7.3:2049574-2049593 MS.gene024551:CDS 50.0%
CCTAATGCCTGAGAAGCGAA+GGG + chr7.3:2047912-2047931 None:intergenic 50.0%
CTATCATGCTGTGAAACGGG+AGG + chr7.3:2047873-2047892 None:intergenic 50.0%
CTCCAGCTCCTAAGGCAAAT+GGG + chr7.3:2048314-2048333 None:intergenic 50.0%
CTCCCGTTTCACAGCATGAT+AGG - chr7.3:2047871-2047890 MS.gene024551:CDS 50.0%
CTCTCCCTCCAAGAATTCGA+GGG - chr7.3:2049599-2049618 MS.gene024551:intron 50.0%
GCCACCTCCAGGTTCATATA+TGG - chr7.3:2048895-2048914 MS.gene024551:intron 50.0%
GCTGTGAAACGGGAGGAAAA+GGG + chr7.3:2047866-2047885 None:intergenic 50.0%
GTTGATGCTGATGCTGAAGC+TGG + chr7.3:2048633-2048652 None:intergenic 50.0%
TACTCTCACTACCACCAAGC+TGG + chr7.3:2048725-2048744 None:intergenic 50.0%
TCTCTCCCTCCAAGAATTCG+AGG - chr7.3:2049598-2049617 MS.gene024551:intron 50.0%
TCTGGACTCCAACGCATTCT+AGG + chr7.3:2048672-2048691 None:intergenic 50.0%
TGCTGTGAAACGGGAGGAAA+AGG + chr7.3:2047867-2047886 None:intergenic 50.0%
TTCTGTCCAGCATGATCAGG+TGG - chr7.3:2048049-2048068 MS.gene024551:intron 50.0%
! CACCCGGAACTTCGAAGTTT+TGG - chr7.3:2050101-2050120 MS.gene024551:CDS 50.0%
! CCTGGAGGTGGCTTTTTACA+TGG + chr7.3:2048887-2048906 None:intergenic 50.0%
! GAAGGTGCATTTGAAGGGGA+AGG + chr7.3:2050248-2050267 None:intergenic 50.0%
! GATGTAGCTTGCAATGAGGC+AGG + chr7.3:2047780-2047799 None:intergenic 50.0%
! GCAGCAGAAGGTGCATTTGA+AGG + chr7.3:2050254-2050273 None:intergenic 50.0%
! TTTTCTGATGCAGGCGATGC+AGG - chr7.3:2048557-2048576 MS.gene024551:intron 50.0%
ATCGACATACACGCCGGTGA+CGG + chr7.3:2048954-2048973 None:intergenic 55.0%
CACTAGGGCCCATTTGCCTT+AGG - chr7.3:2048303-2048322 MS.gene024551:intron 55.0%
CCAAGCCCTCGAATTCTTGG+AGG + chr7.3:2049607-2049626 None:intergenic 55.0%
CCATTTGCCTTAGGAGCTGG+AGG - chr7.3:2048312-2048331 MS.gene024551:intron 55.0%
CCCTTCGCTTCTCAGGCATT+AGG - chr7.3:2047909-2047928 MS.gene024551:CDS 55.0%
CCTCCAAGAATTCGAGGGCT+TGG - chr7.3:2049604-2049623 MS.gene024551:intron 55.0%
CCTCCAGCTCCTAAGGCAAA+TGG + chr7.3:2048315-2048334 None:intergenic 55.0%
GAAGCAGTCAACCAGCTTGG+TGG - chr7.3:2048711-2048730 MS.gene024551:intron 55.0%
GCCGCCAGGACATTCATCAT+TGG + chr7.3:2047841-2047860 None:intergenic 55.0%
GTGGAAGCAGTCAACCAGCT+TGG - chr7.3:2048708-2048727 MS.gene024551:intron 55.0%
GTGTCCAACACTGCAGCAGA+AGG + chr7.3:2050266-2050285 None:intergenic 55.0%
TGCACCTTCTGCTGCAGTGT+TGG - chr7.3:2050259-2050278 MS.gene024551:CDS 55.0%
TTGTCCACCGGAGAAGAAGG+TGG + chr7.3:2050293-2050312 None:intergenic 55.0%
! TTTGCTGTCAGACCCCTGAC+AGG + chr7.3:2047756-2047775 None:intergenic 55.0%
ACACGCAGTCCTCCTCACCT+AGG - chr7.3:2048362-2048381 MS.gene024551:intron 60.0%
ACCTCCCAGCCGAACTCACT+AGG - chr7.3:2048287-2048306 MS.gene024551:CDS 60.0%
CACGACGCCACCTTCTTCTC+CGG - chr7.3:2050283-2050302 MS.gene024551:CDS 60.0%
CCTCCCAGCCGAACTCACTA+GGG - chr7.3:2048288-2048307 MS.gene024551:CDS 60.0%
GGCCCATTTGCCTTAGGAGC+TGG - chr7.3:2048309-2048328 MS.gene024551:intron 60.0%
!! GAGCTTGTTGGTGCCGTCAC+CGG - chr7.3:2048938-2048957 MS.gene024551:intron 60.0%
CCCTAGTGAGTTCGGCTGGG+AGG + chr7.3:2048291-2048310 None:intergenic 65.0%
GACGCCACCTTCTTCTCCGG+TGG - chr7.3:2050286-2050305 MS.gene024551:CDS 65.0%
GGGCCCTAGTGAGTTCGGCT+GGG + chr7.3:2048294-2048313 None:intergenic 65.0%
TGGGCCCTAGTGAGTTCGGC+TGG + chr7.3:2048295-2048314 None:intergenic 65.0%
GGAGGAAAAGGGACGCCGCC+AGG + chr7.3:2047855-2047874 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 2047672 2050505 2047672 ID=MS.gene024551
chr7.3 mRNA 2047672 2050505 2047672 ID=MS.gene024551.t1;Parent=MS.gene024551
chr7.3 exon 2049957 2050505 2049957 ID=MS.gene024551.t1.exon1;Parent=MS.gene024551.t1
chr7.3 CDS 2049957 2050505 2049957 ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3 exon 2049436 2049607 2049436 ID=MS.gene024551.t1.exon2;Parent=MS.gene024551.t1
chr7.3 CDS 2049436 2049607 2049436 ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3 exon 2049272 2049348 2049272 ID=MS.gene024551.t1.exon3;Parent=MS.gene024551.t1
chr7.3 CDS 2049272 2049348 2049272 ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3 exon 2049116 2049155 2049116 ID=MS.gene024551.t1.exon4;Parent=MS.gene024551.t1
chr7.3 CDS 2049116 2049155 2049116 ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3 exon 2048257 2048314 2048257 ID=MS.gene024551.t1.exon5;Parent=MS.gene024551.t1
chr7.3 CDS 2048257 2048314 2048257 ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3 exon 2048095 2048164 2048095 ID=MS.gene024551.t1.exon6;Parent=MS.gene024551.t1
chr7.3 CDS 2048095 2048164 2048095 ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
chr7.3 exon 2047672 2048025 2047672 ID=MS.gene024551.t1.exon7;Parent=MS.gene024551.t1
chr7.3 CDS 2047672 2048025 2047672 ID=cds.MS.gene024551.t1;Parent=MS.gene024551.t1
Gene Sequence

>MS.gene024551

ATGCCTTCTTCGTCTTCACCTGTTCTTCCCAGTCTTATGGAAAGCAATTATATGAAACCCCCGGATTCTTTTCATCGTTCACCTGTCAGGGGTCTGACAGCAAATCCTGCCTCATTGCAAGCTACATCATCGTATCCGATCAGAAGTGTTCGACCTGTGTTTTCAACCAATGATGAATGTCCTGGCGGCGTCCCTTTTCCTCCCGTTTCACAGCATGATAGGCAATATCAAGATTCTCCCTTCGCTTCTCAGGCATTAGGTGACAATGTGTCTTCGGAAATCCACTCAGCAACATTCACTTCTCACCTTCAAGAAAATGATGATATATCGTGGGGACCAGATCCATTGCCAGATATTCTTGGTTTTCCTGAAATTTTTTCTGTCCAGCATGATCAGGTGGAAAACAGTGCTTGTTACATGAATGAAGACAATGTCAAAAAAACTGATTTTGGGGAGTGGGTTGAACAACTAATGACAAGTGATGATTCTGTTAATCCAAATTGGAGTCAGCTTCTTGGTGATGACAATGTTGTTGAACCAACACAACAGGTTTGTTTCTCAATCTGATTTCTAATCCTGACTTGAACAAGAACAATCCTAGGCCAAACTTTACTTACCTCCCAGCCGAACTCACTAGGGCCCATTTGCCTTAGGAGCTGGAGGTTTAAGACAAAGAAACAAAACAAACACACACGCAGTCCTCCTCACCTAGGTTTTCATTTCTATTAACTTTCTGCATTAATGCCATTCTATTATTATTTATTCGAGAGGAAAATCCATATTTGGATGATCAGTTCTATTATTAATTGAATTTGTCACCATGTGCATATAGTTCATTCCCTATTCCCCTTTAGGTTGTATGCGGCTGTTAACACTATATCCTACTTTTCTGATGCAGGCGATGCAGGTTTCTCAGAAGCAGCATACACCATCTGGAGAAGTCAACAATCTTTGTAATCCAGCTTCAGCATCAGCATCAACTGCTTCTCAAACTAAGCCTAGAATGCGTTGGAGTCCAGAACTTCACGAAGCTTTTGTGGAAGCAGTCAACCAGCTTGGTGGTAGTGAGAGTATGTTTACTTCTTCCTAATCTCATCCTTCGTTTGACCTTCTCTCATGAACGTTTCTTCTCATCATATAATGATGTTAACATGCAGAGGCTACTCCAAAAGGTGTCTTGAATCTAATGAATGTTGAGGGCCTTACCATCTACCATGTAAAAAGCCACCTCCAGGTTCATATATGGATTTTCCGTCCTCTTAAATTGAGCTTGTTGGTGCCGTCACCGGCGTGTATGTCGATTTTTATAATCTAATGTTGTTTATAAATTAATTGTTCTTTTAATTTCAGAAGTATAGAACTGCCAGATACAAACCTGAGTCACCAGAAGGTATACAAGAGTGTACTTATAATCCCTATTGTTTTATACAGCAGGTTTTGCTACCAATTTTTTTTTTGTGGATGTGTGGCTTCTTTATCCCTTATAGTTTCGAGAAAGATGTTTTATTTCAACTTCAAATGTCTTTTTTGTTTGTGTTCTTCTTCTTCATGTCCTATGTTGGGATTGATAAAAAGAAGATATGGATGAAACACAAAAGACCATTTTAAAAATAGGAACAATCTCTTATATTTGTTAAAGTGAAAAGGAAAGGTAGAGAAGAAAGAAAAGTGTAGAAGTAAAAATCCAATTATTCCTTTATTTAAAACTTCAAAAGTTTATCTATTTTTCTCTCATTCAAAGGCAAGTTAGAATGCTTTTCCCCCCCTTATTCTTGTTACATTTGAAGAATATTTTATTTTATGCACACAGAAACTTGATGAAACCAGGACCAAACATAGAAATATAATAGAAACAATTTAATTTTATTGATAATAGAATAGAATACGATTACACAATAGGCTCCCTAGGAATTCGAGAGTCTTGGGTCTCTCCCTCCAAGAATTCGAGGGCTTGGTCTCTCGCTATTGACATTGTCCTTCAGATTCCCTATTTATCTAGTAACTGCCTAGAAACATAACTGCTTCCTAATACATAACTGTTGCACATTAATGTAATAATTGCTGGCTAATAAAATAATAACTGCCTAATAATGTTTACTAATAGTAGGCCTAACAAAACTCCTTTAATATTTTGTGAAAATATAAGAGTAAGAATGTGAATGGTGAATGAGATCTTCTTCTGTACCTGCAGAAACTTCTGAGAAAAAGATGAGTTCAATTGAGGAAATGAAATCTCTGGACTTGAAAACGTGAGTCATTTCTCTAACTTCTTTTAGCTTTAGATATGATACTTATTGTTCACAAATCACAATTCCATTGTTTCCTTGAATTATGGTTACAGGAGTAAGGGAATCACTGAAGCATTACGGTTGCAGATGGAACTTCAGAAGCGACTTCATGAACAACTTGAGGTACATTATTGTTATTATCACCCGGAACTTCGAAGTTTTGGCATGTCTGATATTGTAATTGTTATACAGATTCAAAGGAAGTTGCAGATTCAAATTGAAAACCAAGGGAAACATCTTGAGATGATGTTTGAGAAACAGAAACAGATAGGTGACAACAAGAGCCCTTCCCCTTCAAATGCACCTTCTGCTGCAGTGTTGGACACGACGCCACCTTCTTCTCCGGTGGACAATTTAAAAACTTCAAAAGATGAACGGGATAAATCAGGATGTAACGCTGACATTCCTAAAGACATACCTGGAGAAAGTTCCCATGATGTAAGCAGAAAGCAAATGGCAGATGAAGCTGAAGTTACCAATGAACATGAGAGGGTAGATGATCAGTTTTCTGACGTGCCTCCAACAAAACGAGCGAAGATTCAATGA
Protein sequence

>MS.gene024551.t1

MPSSSSPVLPSLMESNYMKPPDSFHRSPVRGLTANPASLQATSSYPIRSVRPVFSTNDECPGGVPFPPVSQHDRQYQDSPFASQALGDNVSSEIHSATFTSHLQENDDISWGPDPLPDILGFPEIFSVQHDQVENSACYMNEDNVKKTDFGEWVEQLMTSDDSVNPNWSQLLGDDNVVEPTQQAMQVSQKQHTPSGEVNNLCNPASASASTASQTKPRMRWSPELHEAFVEAVNQLGGSEKATPKGVLNLMNVEGLTIYHVKSHLQKYRTARYKPESPEETSEKKMSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKHLEMMFEKQKQIGDNKSPSPSNAPSAAVLDTTPPSSPVDNLKTSKDERDKSGCNADIPKDIPGESSHDVSRKQMADEAEVTNEHERVDDQFSDVPPTKRAKIQ