Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024569.t1 | AFK34644.1 | 67.3 | 245 | 75 | 4 | 2 | 246 | 150 | 389 | 9.00E-71 | 277.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024569.t1 | Q99090 | 44.0 | 241 | 119 | 7 | 3 | 233 | 147 | 381 | 3.9e-38 | 160.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024569.t1 | G7L1X5 | 67.3 | 245 | 75 | 4 | 2 | 246 | 150 | 389 | 6.5e-71 | 277.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene024569.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024569.t1 | MTR_7g115120 | 69.828 | 232 | 65 | 4 | 2 | 233 | 150 | 376 | 1.66e-91 | 278 |
MS.gene024569.t1 | MTR_1g080920 | 55.172 | 232 | 90 | 7 | 9 | 233 | 167 | 391 | 3.56e-60 | 198 |
MS.gene024569.t1 | MTR_7g115140 | 84.746 | 118 | 15 | 3 | 6 | 121 | 90 | 206 | 2.45e-57 | 184 |
MS.gene024569.t1 | MTR_7g115180 | 97.500 | 80 | 2 | 0 | 249 | 328 | 65 | 144 | 2.32e-45 | 151 |
MS.gene024569.t1 | MTR_1g080910 | 72.500 | 80 | 17 | 1 | 249 | 328 | 65 | 139 | 3.38e-30 | 112 |
MS.gene024569.t1 | MTR_7g115180 | 73.214 | 56 | 15 | 0 | 249 | 304 | 65 | 120 | 4.11e-19 | 82.0 |
MS.gene024569.t1 | MTR_1g080910 | 97.222 | 36 | 1 | 0 | 249 | 284 | 65 | 100 | 1.20e-16 | 75.1 |
MS.gene024569.t1 | MTR_1g087050 | 77.778 | 45 | 9 | 1 | 284 | 328 | 88 | 131 | 7.69e-13 | 65.1 |
MS.gene024569.t1 | MTR_3g109310 | 41.379 | 87 | 50 | 1 | 45 | 130 | 121 | 207 | 1.18e-12 | 67.8 |
MS.gene024569.t1 | MTR_1g008990 | 42.500 | 120 | 66 | 2 | 21 | 139 | 142 | 259 | 2.31e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024569.t1 | AT5G28750 | 67.500 | 80 | 26 | 0 | 249 | 328 | 68 | 147 | 3.03e-27 | 104 |
MS.gene024569.t1 | AT5G28770 | 55.738 | 122 | 48 | 2 | 23 | 142 | 122 | 239 | 2.88e-25 | 103 |
MS.gene024569.t1 | AT5G28770 | 55.738 | 122 | 48 | 2 | 23 | 142 | 129 | 246 | 2.95e-25 | 103 |
MS.gene024569.t1 | AT5G24800 | 42.069 | 145 | 66 | 5 | 4 | 135 | 71 | 210 | 2.94e-21 | 92.0 |
MS.gene024569.t1 | AT5G28770 | 56.436 | 101 | 38 | 2 | 23 | 121 | 129 | 225 | 1.80e-18 | 84.0 |
MS.gene024569.t1 | AT4G02640 | 49.600 | 125 | 60 | 2 | 17 | 138 | 188 | 312 | 3.68e-18 | 85.1 |
MS.gene024569.t1 | AT4G02640 | 49.600 | 125 | 60 | 2 | 17 | 138 | 188 | 312 | 3.91e-18 | 85.1 |
MS.gene024569.t1 | AT3G54620 | 49.533 | 107 | 49 | 1 | 47 | 153 | 229 | 330 | 4.09e-18 | 84.7 |
MS.gene024569.t1 | AT4G02640 | 49.600 | 125 | 60 | 2 | 17 | 138 | 182 | 306 | 4.18e-18 | 84.7 |
MS.gene024569.t1 | AT4G02640 | 49.600 | 125 | 60 | 2 | 17 | 138 | 182 | 306 | 4.32e-18 | 84.7 |
Find 69 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTCAGGATGCTCCAAAAT+AGG | 0.198060 | 7.2:-2233958 | MS.gene024569:intron |
GTTTAGCTGATTCCCTATTT+TGG | 0.286405 | 7.2:+2233945 | None:intergenic |
TACTGAGGTTTCTAGTTCTA+AGG | 0.292945 | 7.2:-2225073 | MS.gene024569:CDS |
GTTTGAGTCTGAGCTTAAAA+AGG | 0.305627 | 7.2:-2225163 | MS.gene024569:CDS |
GAGAGATGTAAAAGATTAAC+TGG | 0.323266 | 7.2:-2233343 | MS.gene024569:CDS |
GGAGAGGTTAATATGAATAT+TGG | 0.345096 | 7.2:-2234077 | MS.gene024569:CDS |
AGGGGAAGAGAAAGCTTCTC+AGG | 0.359196 | 7.2:-2234099 | MS.gene024569:CDS |
CCTGAACTCGTTGTTATTGC+TGG | 0.366575 | 7.2:-2227150 | MS.gene024569:CDS |
GATATGAGAGGAGTCAATAA+TGG | 0.367652 | 7.2:-2233151 | MS.gene024569:CDS |
TATTAGGTCTCTACATTAAG+AGG | 0.369226 | 7.2:-2233813 | MS.gene024569:intron |
GTTCTATCACTTGTCTTCTT+CGG | 0.371352 | 7.2:+2232989 | None:intergenic |
AAGATTAACTGGATCAATTC+CGG | 0.379673 | 7.2:-2233332 | MS.gene024569:CDS |
AACTGTCAAAAGCTTTCAAC+AGG | 0.389906 | 7.2:-2227067 | MS.gene024569:intron |
CCGATACTGCGACCAACTTC+AGG | 0.394518 | 7.2:+2227093 | None:intergenic |
ATTGATGTTGCCTCAGACAT+TGG | 0.396102 | 7.2:+2233295 | None:intergenic |
GGCTCCCCTCCTGAGGAATC+TGG | 0.401880 | 7.2:+2225138 | None:intergenic |
TTTCAGGATGCTCCAAAATA+GGG | 0.416451 | 7.2:-2233957 | MS.gene024569:intron |
GACATTGGATTATTAAAAGT+TGG | 0.427671 | 7.2:+2233181 | None:intergenic |
AGAGGAGTCAATAATGGGTT+GGG | 0.448583 | 7.2:-2233145 | MS.gene024569:CDS |
GCAGCAGGATGGAACGAGAT+AGG | 0.450336 | 7.2:-2233082 | MS.gene024569:CDS |
CAAAGCTATCCACCCGCGGC+AGG | 0.455051 | 7.2:+2233047 | None:intergenic |
TGAAACCTGTTGTCACAATC+AGG | 0.455873 | 7.2:-2234142 | MS.gene024569:CDS |
GACATGATCATAGTTGCTGC+TGG | 0.457615 | 7.2:-2234182 | MS.gene024569:CDS |
ATGGGAATGCCATTACTTGA+TGG | 0.462778 | 7.2:-2233274 | MS.gene024569:CDS |
AATGTCTGAGGCAACATCAA+TGG | 0.467879 | 7.2:-2233293 | MS.gene024569:CDS |
GAGAGGAGTCAATAATGGGT+TGG | 0.473171 | 7.2:-2233146 | MS.gene024569:CDS |
ATGTCTGAGGCAACATCAAT+GGG | 0.480461 | 7.2:-2233292 | MS.gene024569:CDS |
CCAGCAATAACAACGAGTTC+AGG | 0.481286 | 7.2:+2227150 | None:intergenic |
TCAACGACAAGTGGATCCTC+AGG | 0.483871 | 7.2:-2234119 | MS.gene024569:CDS |
ATATGAGAGGAGTCAATAAT+GGG | 0.486438 | 7.2:-2233150 | MS.gene024569:CDS |
TTATTTGGATCTTCTTGCAC+AGG | 0.496736 | 7.2:+2233217 | None:intergenic |
CCTGAAGTTGGTCGCAGTAT+CGG | 0.502726 | 7.2:-2227093 | MS.gene024569:CDS |
GTTGACCTGATTGTGACAAC+AGG | 0.513826 | 7.2:+2234137 | None:intergenic |
GGATAGCTTTGATCATCAGC+TGG | 0.514472 | 7.2:-2233035 | MS.gene024569:CDS |
ACAGGTTTCAGTGGCATGTA+GGG | 0.514510 | 7.2:+2234155 | None:intergenic |
GTGCAGAAGAACACTGCAGC+AGG | 0.518310 | 7.2:-2233097 | MS.gene024569:CDS |
AACAAATTCCCTGCCGCGGG+TGG | 0.522410 | 7.2:-2233056 | MS.gene024569:CDS |
GTAAATCATGTAGGCAGCAA+AGG | 0.522582 | 7.2:-2225187 | MS.gene024569:intron |
ACAGCAATTGATTTCTCAGA+TGG | 0.525895 | 7.2:+2225117 | None:intergenic |
ATTGGCATTGCATTAAATGC+CGG | 0.535991 | 7.2:+2233313 | None:intergenic |
GACTCCTCTCATATCATGAC+TGG | 0.537853 | 7.2:+2233159 | None:intergenic |
CTCATATCATGACTGGACAT+TGG | 0.537888 | 7.2:+2233166 | None:intergenic |
ACATGATCATAGTTGCTGCT+GGG | 0.551656 | 7.2:-2234181 | MS.gene024569:CDS |
CTGATGCAAAACGAGTTAAG+AGG | 0.557366 | 7.2:-2234043 | MS.gene024569:intron |
AGAGAAAGCTTCTCAGGGAG+AGG | 0.567096 | 7.2:-2234093 | MS.gene024569:CDS |
AAGAACAAATTCCCTGCCGC+GGG | 0.569746 | 7.2:-2233059 | MS.gene024569:CDS |
AACAGGTTTCAGTGGCATGT+AGG | 0.571055 | 7.2:+2234154 | None:intergenic |
CTCAGATGGCTCCCCTCCTG+AGG | 0.577964 | 7.2:+2225131 | None:intergenic |
ACAATCAGGTCAACGACAAG+TGG | 0.581189 | 7.2:-2234128 | MS.gene024569:CDS |
GAAGGACTTCCATCAAGTAA+TGG | 0.591255 | 7.2:+2233265 | None:intergenic |
TAATGCAATGCCAATGTCTG+AGG | 0.599128 | 7.2:-2233305 | MS.gene024569:CDS |
AAAGCTATCCACCCGCGGCA+GGG | 0.601789 | 7.2:+2233048 | None:intergenic |
GGGGAAGAGAAAGCTTCTCA+GGG | 0.602774 | 7.2:-2234098 | MS.gene024569:CDS |
CATGATCATAGTTGCTGCTG+GGG | 0.605839 | 7.2:-2234180 | MS.gene024569:CDS |
GGAACCAGATTCCTCAGGAG+GGG | 0.609899 | 7.2:-2225142 | MS.gene024569:CDS |
AAGGAACCAGATTCCTCAGG+AGG | 0.613287 | 7.2:-2225144 | MS.gene024569:CDS |
AAATACTAAGCTTGAAACAC+AGG | 0.618412 | 7.2:-2233897 | MS.gene024569:intron |
AGGAACCAGATTCCTCAGGA+GGG | 0.620434 | 7.2:-2225143 | MS.gene024569:CDS |
GCATCAGCTGATAACTCAGA+AGG | 0.620964 | 7.2:+2233247 | None:intergenic |
CAACGACAAGTGGATCCTCA+GGG | 0.625807 | 7.2:-2234118 | MS.gene024569:CDS |
ATTGTGACAACAGGTTTCAG+TGG | 0.628600 | 7.2:+2234146 | None:intergenic |
GGAGTCAATAATGGGTTGGG+AGG | 0.632977 | 7.2:-2233142 | MS.gene024569:CDS |
AGAGAAGAAGCAAGATACTG+AGG | 0.643616 | 7.2:-2225088 | MS.gene024569:CDS |
GAAGAACAAATTCCCTGCCG+CGG | 0.646610 | 7.2:-2233060 | MS.gene024569:CDS |
AGAAGCTTTCTCTTCCCCTG+AGG | 0.650082 | 7.2:+2234103 | None:intergenic |
ATGTCCAGTCATGATATGAG+AGG | 0.664118 | 7.2:-2233163 | MS.gene024569:CDS |
AGAAGAACACTGCAGCAGGA+TGG | 0.669756 | 7.2:-2233093 | MS.gene024569:CDS |
AACGACAAGTGGATCCTCAG+GGG | 0.710138 | 7.2:-2234117 | MS.gene024569:CDS |
TGATCAAAGCTATCCACCCG+CGG | 0.714097 | 7.2:+2233043 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 2225062 | 2234201 | 2225062 | ID=MS.gene024569 |
chr7.2 | mRNA | 2225062 | 2234201 | 2225062 | ID=MS.gene024569.t1;Parent=MS.gene024569 |
chr7.2 | exon | 2234044 | 2234201 | 2234044 | ID=MS.gene024569.t1.exon1;Parent=MS.gene024569.t1 |
chr7.2 | CDS | 2234044 | 2234201 | 2234044 | ID=cds.MS.gene024569.t1;Parent=MS.gene024569.t1 |
chr7.2 | exon | 2233898 | 2233973 | 2233898 | ID=MS.gene024569.t1.exon2;Parent=MS.gene024569.t1 |
chr7.2 | CDS | 2233898 | 2233973 | 2233898 | ID=cds.MS.gene024569.t1;Parent=MS.gene024569.t1 |
chr7.2 | exon | 2233704 | 2233829 | 2233704 | ID=MS.gene024569.t1.exon3;Parent=MS.gene024569.t1 |
chr7.2 | CDS | 2233704 | 2233829 | 2233704 | ID=cds.MS.gene024569.t1;Parent=MS.gene024569.t1 |
chr7.2 | exon | 2232999 | 2233380 | 2232999 | ID=MS.gene024569.t1.exon4;Parent=MS.gene024569.t1 |
chr7.2 | CDS | 2232999 | 2233380 | 2232999 | ID=cds.MS.gene024569.t1;Parent=MS.gene024569.t1 |
chr7.2 | exon | 2227068 | 2227177 | 2227068 | ID=MS.gene024569.t1.exon5;Parent=MS.gene024569.t1 |
chr7.2 | CDS | 2227068 | 2227177 | 2227068 | ID=cds.MS.gene024569.t1;Parent=MS.gene024569.t1 |
chr7.2 | exon | 2225062 | 2225196 | 2225062 | ID=MS.gene024569.t1.exon6;Parent=MS.gene024569.t1 |
chr7.2 | CDS | 2225062 | 2225196 | 2225062 | ID=cds.MS.gene024569.t1;Parent=MS.gene024569.t1 |
Gene Sequence |
Protein sequence |