Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024570.t1 | XP_003626454.1 | 96.9 | 391 | 10 | 2 | 1 | 391 | 1 | 389 | 2.60E-181 | 644.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024570.t1 | Q99090 | 51.0 | 404 | 165 | 11 | 1 | 386 | 1 | 389 | 1.3e-85 | 318.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024570.t1 | G7L1X5 | 96.9 | 391 | 10 | 2 | 1 | 391 | 1 | 389 | 1.8e-181 | 644.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene024570.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024570.t1 | MTR_7g115120 | 97.442 | 391 | 8 | 2 | 1 | 391 | 1 | 389 | 0.0 | 771 |
| MS.gene024570.t1 | MTR_1g080920 | 56.543 | 405 | 153 | 10 | 1 | 387 | 1 | 400 | 3.05e-131 | 383 |
| MS.gene024570.t1 | MTR_7g115140 | 58.960 | 173 | 49 | 5 | 99 | 268 | 53 | 206 | 1.08e-53 | 177 |
| MS.gene024570.t1 | MTR_3g109310 | 52.899 | 138 | 58 | 3 | 151 | 281 | 76 | 213 | 5.86e-31 | 120 |
| MS.gene024570.t1 | MTR_1g008990 | 58.333 | 120 | 45 | 2 | 170 | 286 | 142 | 259 | 3.81e-25 | 105 |
| MS.gene024570.t1 | MTR_1g008990 | 54.622 | 119 | 46 | 2 | 170 | 285 | 142 | 255 | 1.16e-21 | 94.0 |
| MS.gene024570.t1 | MTR_4g070860 | 40.000 | 115 | 59 | 1 | 173 | 287 | 17 | 121 | 3.61e-16 | 75.9 |
| MS.gene024570.t1 | MTR_3g110010 | 56.410 | 78 | 34 | 0 | 200 | 277 | 633 | 710 | 3.27e-15 | 77.8 |
| MS.gene024570.t1 | MTR_3g109982 | 56.579 | 76 | 33 | 0 | 202 | 277 | 651 | 726 | 5.93e-15 | 77.0 |
| MS.gene024570.t1 | MTR_3g117120 | 39.785 | 93 | 56 | 0 | 193 | 285 | 27 | 119 | 1.42e-14 | 71.2 |
| MS.gene024570.t1 | MTR_8g015250 | 40.816 | 98 | 53 | 1 | 171 | 268 | 54 | 146 | 7.72e-14 | 69.7 |
| MS.gene024570.t1 | MTR_7g029400 | 40.816 | 98 | 53 | 1 | 171 | 268 | 64 | 156 | 1.15e-13 | 69.7 |
| MS.gene024570.t1 | MTR_8g086020 | 35.238 | 105 | 68 | 0 | 181 | 285 | 20 | 124 | 1.23e-13 | 68.6 |
| MS.gene024570.t1 | MTR_6g016375 | 47.297 | 74 | 39 | 0 | 196 | 269 | 90 | 163 | 8.41e-13 | 67.4 |
| MS.gene024570.t1 | MTR_1g022495 | 29.747 | 158 | 88 | 3 | 165 | 309 | 9 | 156 | 2.47e-12 | 65.1 |
| MS.gene024570.t1 | MTR_7g017880 | 42.857 | 91 | 44 | 1 | 178 | 268 | 77 | 159 | 4.37e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024570.t1 | AT5G28770 | 45.501 | 389 | 127 | 14 | 1 | 384 | 1 | 309 | 5.44e-72 | 228 |
| MS.gene024570.t1 | AT5G28770 | 45.195 | 385 | 127 | 14 | 1 | 384 | 1 | 302 | 7.63e-68 | 217 |
| MS.gene024570.t1 | AT5G28770 | 47.810 | 274 | 90 | 9 | 1 | 269 | 1 | 226 | 1.95e-53 | 178 |
| MS.gene024570.t1 | AT4G02640 | 37.615 | 327 | 147 | 8 | 1 | 285 | 1 | 312 | 1.93e-39 | 145 |
| MS.gene024570.t1 | AT4G02640 | 37.615 | 327 | 147 | 8 | 1 | 285 | 1 | 312 | 2.29e-39 | 145 |
| MS.gene024570.t1 | AT4G02640 | 37.072 | 321 | 151 | 7 | 1 | 285 | 1 | 306 | 6.06e-39 | 144 |
| MS.gene024570.t1 | AT4G02640 | 37.072 | 321 | 151 | 7 | 1 | 285 | 1 | 306 | 6.62e-39 | 144 |
| MS.gene024570.t1 | AT3G54620 | 34.293 | 382 | 162 | 14 | 1 | 325 | 1 | 350 | 1.64e-37 | 140 |
| MS.gene024570.t1 | AT5G24800 | 55.814 | 129 | 47 | 4 | 158 | 277 | 76 | 203 | 7.49e-35 | 130 |
| MS.gene024570.t1 | AT5G28770 | 43.404 | 235 | 80 | 9 | 1 | 230 | 1 | 187 | 6.47e-31 | 118 |
| MS.gene024570.t1 | AT3G54620 | 32.723 | 382 | 151 | 16 | 1 | 325 | 1 | 333 | 2.29e-25 | 106 |
| MS.gene024570.t1 | AT3G30530 | 39.796 | 98 | 56 | 1 | 171 | 268 | 59 | 153 | 5.42e-13 | 67.4 |
| MS.gene024570.t1 | AT2G04038 | 42.857 | 98 | 51 | 1 | 171 | 268 | 54 | 146 | 8.82e-13 | 66.2 |
| MS.gene024570.t1 | AT1G75390 | 37.963 | 108 | 62 | 1 | 194 | 301 | 39 | 141 | 1.03e-12 | 66.2 |
| MS.gene024570.t1 | AT2G18160 | 39.759 | 83 | 50 | 0 | 193 | 275 | 28 | 110 | 1.86e-12 | 65.5 |
| MS.gene024570.t1 | AT1G13600 | 38.776 | 98 | 54 | 1 | 171 | 268 | 67 | 158 | 2.03e-11 | 63.2 |
| MS.gene024570.t1 | AT5G15830 | 45.545 | 101 | 44 | 4 | 170 | 268 | 55 | 146 | 9.74e-11 | 60.8 |
Find 80 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCTTCCCGATCTATTAT+TGG | 0.211521 | 7.2:+2249035 | None:intergenic |
| CTTTCAGGATGCTCTCTAAT+AGG | 0.224164 | 7.2:-2249926 | MS.gene024570:intron |
| TATGTAGAATGCGGCCCTTC+TGG | 0.245369 | 7.2:-2250482 | MS.gene024570:intron |
| CTGAAATAACGGAGCAATAT+TGG | 0.250912 | 7.2:-2251759 | MS.gene024570:CDS |
| TATTGATTCTGAGGATTATC+AGG | 0.285549 | 7.2:-2251539 | MS.gene024570:CDS |
| ATTGTAACAGCAGGTTTCTT+TGG | 0.288769 | 7.2:+2250398 | None:intergenic |
| GAGACAGTTAAAAGATTTAC+TGG | 0.291659 | 7.2:-2249234 | MS.gene024570:CDS |
| CTCATGGCAATAGGGATCTT+TGG | 0.341962 | 7.2:-2250713 | MS.gene024570:intron |
| CCATCTTATCCTTCTGAACT+TGG | 0.355060 | 7.2:-2250658 | MS.gene024570:CDS |
| CCTGCCACGGGTGGCTAGCT+TGG | 0.382757 | 7.2:-2248944 | MS.gene024570:CDS |
| AAGATATCAAAGTTGCTGTT+GGG | 0.385646 | 7.2:-2250433 | MS.gene024570:CDS |
| GACATTAGATTATTAGATAA+GGG | 0.396715 | 7.2:+2249078 | None:intergenic |
| TTTCAGGATGCTCTCTAATA+GGG | 0.402739 | 7.2:-2249925 | MS.gene024570:intron |
| TCCTTCTGAACTTGGACCTC+TGG | 0.404582 | 7.2:-2250650 | MS.gene024570:CDS |
| ATTCTATCACTTGTCTTCTT+CGG | 0.406886 | 7.2:+2248891 | None:intergenic |
| TATTAGGTCTCTGAATTAAG+AGG | 0.422615 | 7.2:-2249735 | MS.gene024570:intron |
| CCAAGCTAGCCACCCGTGGC+AGG | 0.428000 | 7.2:+2248944 | None:intergenic |
| GTTGAAGTTGAAGATGAAGA+AGG | 0.442163 | 7.2:+2251610 | None:intergenic |
| GCAGCAGGTGGGAACAAGAT+AGG | 0.452428 | 7.2:-2248979 | MS.gene024570:CDS |
| ATGGGAATGTCATTATTTGA+TGG | 0.455802 | 7.2:-2249171 | MS.gene024570:CDS |
| GATGGCTGTGATCCATTGTC+AGG | 0.464580 | 7.2:+2250676 | None:intergenic |
| GAGATACAACAAAGATGAAT+CGG | 0.465070 | 7.2:-2251711 | MS.gene024570:CDS |
| GGGATCTTTGGTCAAATCTC+AGG | 0.465850 | 7.2:-2250701 | MS.gene024570:CDS |
| GGACATTAGATTATTAGATA+AGG | 0.466925 | 7.2:+2249077 | None:intergenic |
| AAAGATATCAAAGTTGCTGT+TGG | 0.482051 | 7.2:-2250434 | MS.gene024570:CDS |
| GAGGGAGAGATTAATATGAA+TGG | 0.483459 | 7.2:-2250335 | MS.gene024570:CDS |
| GGACCTCTGGCTACTTTGAA+AGG | 0.489971 | 7.2:-2250637 | MS.gene024570:intron |
| AATGTCTGAGGTATCATCAA+TGG | 0.491343 | 7.2:-2249190 | MS.gene024570:CDS |
| GGCGCAAGCAAGATCAAGCT+TGG | 0.492090 | 7.2:+2251504 | None:intergenic |
| GTTATCAATTGCTGAAATAA+CGG | 0.504761 | 7.2:-2251770 | MS.gene024570:CDS |
| GCAGGTTTCTTTGGCATGCA+AGG | 0.507308 | 7.2:+2250407 | None:intergenic |
| ATGTCTGAGGTATCATCAAT+GGG | 0.509553 | 7.2:-2249189 | MS.gene024570:CDS |
| TTATTTGGATCTTCTTGCAC+AGG | 0.510884 | 7.2:+2249114 | None:intergenic |
| AGAGGAGCCAATAATAGATC+GGG | 0.512572 | 7.2:-2249042 | MS.gene024570:CDS |
| CAGAAGAACACCGCAGCAGG+TGG | 0.514294 | 7.2:-2248991 | MS.gene024570:CDS |
| GCGCCGCCGTCGCTAAGTCG+AGG | 0.516197 | 7.2:-2251486 | MS.gene024570:CDS |
| CGCCGCCGTCGCTAAGTCGA+GGG | 0.517985 | 7.2:-2251485 | MS.gene024570:intron |
| GAGAGGAGCCAATAATAGAT+CGG | 0.524926 | 7.2:-2249043 | MS.gene024570:CDS |
| GTTGACTTCGAAAGCGTGCA+AGG | 0.526678 | 7.2:-2251737 | MS.gene024570:CDS |
| GAATCGGAGTGATTCAGAAT+GGG | 0.529997 | 7.2:-2251695 | MS.gene024570:CDS |
| GGCTCCTCTCATATCATGAC+TGG | 0.535600 | 7.2:+2249056 | None:intergenic |
| GTGCAGAAGAACACCGCAGC+AGG | 0.536590 | 7.2:-2248994 | MS.gene024570:CDS |
| CCAAGTTCAGAAGGATAAGA+TGG | 0.536978 | 7.2:+2250658 | None:intergenic |
| CAATAATAGTATTGATTCTG+AGG | 0.537078 | 7.2:-2251548 | MS.gene024570:CDS |
| AGATATCAAAGTTGCTGTTG+GGG | 0.538293 | 7.2:-2250432 | MS.gene024570:CDS |
| ACAATCAAGTCAACAACAAG+TGG | 0.544242 | 7.2:-2250380 | MS.gene024570:CDS |
| TGAATCGGAGTGATTCAGAA+TGG | 0.545437 | 7.2:-2251696 | MS.gene024570:CDS |
| GCCAGAGGTCCAAGTTCAGA+AGG | 0.550767 | 7.2:+2250649 | None:intergenic |
| CATCTTCAGAGTCGAATTCG+TGG | 0.551475 | 7.2:-2248919 | MS.gene024570:CDS |
| AACAAATTCCCTGCCACGGG+TGG | 0.555330 | 7.2:-2248953 | MS.gene024570:CDS |
| AAGATTTACTGGATCGAACC+CGG | 0.558877 | 7.2:-2249223 | MS.gene024570:CDS |
| CAAGCTAGCCACCCGTGGCA+GGG | 0.562427 | 7.2:+2248945 | None:intergenic |
| TCTTCGTCTTGAGCGTCTAG+CGG | 0.573008 | 7.2:+2249899 | None:intergenic |
| CAGACATTGCATTAAACACC+GGG | 0.574406 | 7.2:+2249205 | None:intergenic |
| TAGATGGATCGTTTCCAGAA+GGG | 0.575636 | 7.2:+2250468 | None:intergenic |
| ATCAGACGATGAGGAAGCTG+AGG | 0.576946 | 7.2:-2250354 | MS.gene024570:CDS |
| TTTAACTGAGCTTGAAACAC+AGG | 0.587276 | 7.2:-2249865 | MS.gene024570:intron |
| GTTGACTTGATTGTAACAGC+AGG | 0.587759 | 7.2:+2250389 | None:intergenic |
| ACGAACAAATTCCCTGCCAC+GGG | 0.590000 | 7.2:-2248956 | MS.gene024570:CDS |
| TTAGATGGATCGTTTCCAGA+AGG | 0.592645 | 7.2:+2250467 | None:intergenic |
| ACTTCGAAAGCGTGCAAGGG+AGG | 0.597046 | 7.2:-2251733 | MS.gene024570:CDS |
| TCAGACATTGCATTAAACAC+CGG | 0.598502 | 7.2:+2249204 | None:intergenic |
| AAATCTCAGGATCCTGACAA+TGG | 0.601386 | 7.2:-2250688 | MS.gene024570:CDS |
| GACGAACAAATTCCCTGCCA+CGG | 0.607260 | 7.2:-2248957 | MS.gene024570:CDS |
| TGTTGAAACATTAAGAGCAA+AGG | 0.611502 | 7.2:-2249625 | MS.gene024570:intron |
| TATCTTGTTCCCACCTGCTG+CGG | 0.616019 | 7.2:+2248981 | None:intergenic |
| GCATCAGCTGATGACTCAGA+AGG | 0.620005 | 7.2:+2249144 | None:intergenic |
| TTGACTTCGAAAGCGTGCAA+GGG | 0.621528 | 7.2:-2251736 | MS.gene024570:CDS |
| CTGATGCAAAACGAGTAAGA+AGG | 0.628581 | 7.2:-2250301 | MS.gene024570:intron |
| TTTGAGATTGACATCAACGG+TGG | 0.645017 | 7.2:+2251573 | None:intergenic |
| TCAGACGATGAGGAAGCTGA+GGG | 0.659901 | 7.2:-2250353 | MS.gene024570:CDS |
| ATGTCCAGTCATGATATGAG+AGG | 0.664118 | 7.2:-2249060 | MS.gene024570:CDS |
| GGTGTTTAATGCAATGTCTG+AGG | 0.664829 | 7.2:-2249202 | MS.gene024570:CDS |
| AGAAGAACACCGCAGCAGGT+GGG | 0.666761 | 7.2:-2248990 | MS.gene024570:CDS |
| AAGTGGATCATCAGACGATG+AGG | 0.668470 | 7.2:-2250363 | MS.gene024570:CDS |
| TGTTCCAAGCTAGCCACCCG+TGG | 0.670248 | 7.2:+2248940 | None:intergenic |
| TACCCTCGACTTAGCGACGG+CGG | 0.681240 | 7.2:+2251483 | None:intergenic |
| AAACCTTTCAAAGTAGCCAG+AGG | 0.696494 | 7.2:+2250634 | None:intergenic |
| ATATACCCTCGACTTAGCGA+CGG | 0.708838 | 7.2:+2251480 | None:intergenic |
| CTTCAGAGTCGAATTCGTGG+TGG | 0.718456 | 7.2:-2248916 | MS.gene024570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAATGCA+TGG | + | chr7.2:2249261-2249280 | None:intergenic | 10.0% |
| !! | ATATAATATTCTATCTTATT+AGG | - | chr7.2:2250927-2250946 | MS.gene024570:intron | 10.0% |
| !! | AAAAATGAGAACAATATAAA+GGG | + | chr7.2:2251406-2251425 | None:intergenic | 15.0% |
| !! | ATAGTAAATTAAATTGTATC+AGG | + | chr7.2:2249297-2249316 | None:intergenic | 15.0% |
| !! | TAAAAATGAGAACAATATAA+AGG | + | chr7.2:2251407-2251426 | None:intergenic | 15.0% |
| !! | TAGTAAATTAAATTGTATCA+GGG | + | chr7.2:2249296-2249315 | None:intergenic | 15.0% |
| !! | TGTATAAAATACTTAATTCA+GGG | + | chr7.2:2250704-2250723 | None:intergenic | 15.0% |
| !! | TTGTATAAAATACTTAATTC+AGG | + | chr7.2:2250705-2250724 | None:intergenic | 15.0% |
| !!! | ATAAGTTATTTCTATAATCA+AGG | + | chr7.2:2250644-2250663 | None:intergenic | 15.0% |
| !!! | TATATAGCTTTTGAATATTA+CGG | + | chr7.2:2249434-2249453 | None:intergenic | 15.0% |
| !!! | TCTTTATTTTGTAATTTAGA+TGG | + | chr7.2:2250229-2250248 | None:intergenic | 15.0% |
| !!! | TTATATTGTTCTCATTTTTA+AGG | - | chr7.2:2251407-2251426 | MS.gene024570:intron | 15.0% |
| !! | AAACTATAATAGAGATTTCA+CGG | + | chr7.2:2250573-2250592 | None:intergenic | 20.0% |
| !! | GACATTAGATTATTAGATAA+GGG | + | chr7.2:2251603-2251622 | None:intergenic | 20.0% |
| !! | TTAATTCTGTCAACATATAT+GGG | + | chr7.2:2249598-2249617 | None:intergenic | 20.0% |
| !! | TTTAATTCTGTCAACATATA+TGG | + | chr7.2:2249599-2249618 | None:intergenic | 20.0% |
| !!! | ACTATATATTTTTTTGTGTG+TGG | - | chr7.2:2249312-2249331 | MS.gene024570:intron | 20.0% |
| !!! | AGTAGATCACAATTTTTTAA+GGG | - | chr7.2:2250146-2250165 | MS.gene024570:intron | 20.0% |
| !!! | TAGTAGATCACAATTTTTTA+AGG | - | chr7.2:2250145-2250164 | MS.gene024570:intron | 20.0% |
| !!! | TTTTATTCATATGTAGAATG+CGG | - | chr7.2:2250187-2250206 | MS.gene024570:intron | 20.0% |
| ! | AAACATGGTAAATACATTGA+AGG | - | chr7.2:2250117-2250136 | MS.gene024570:intron | 25.0% |
| ! | AACACTTGAGAAATTATTTG+AGG | - | chr7.2:2250500-2250519 | MS.gene024570:intron | 25.0% |
| ! | AACTACTTTACTAGTAAAAC+TGG | - | chr7.2:2251090-2251109 | MS.gene024570:intron | 25.0% |
| ! | AACTATAATAGAGATTTCAC+GGG | + | chr7.2:2250572-2250591 | None:intergenic | 25.0% |
| ! | ACACATAAATCAATTGGAAA+TGG | + | chr7.2:2251353-2251372 | None:intergenic | 25.0% |
| ! | ACACTTGAGAAATTATTTGA+GGG | - | chr7.2:2250501-2250520 | MS.gene024570:intron | 25.0% |
| ! | ATTTGAACGACTAATTAAGA+TGG | + | chr7.2:2250897-2250916 | None:intergenic | 25.0% |
| ! | GGACATTAGATTATTAGATA+AGG | + | chr7.2:2251604-2251623 | None:intergenic | 25.0% |
| ! | GGTTGAAAAAAGTGATTATT+TGG | + | chr7.2:2251582-2251601 | None:intergenic | 25.0% |
| ! | GTTATCAATTGCTGAAATAA+CGG | - | chr7.2:2248908-2248927 | MS.gene024570:CDS | 25.0% |
| ! | TAGAATTATTCATCATCCAA+TGG | - | chr7.2:2249700-2249719 | MS.gene024570:CDS | 25.0% |
| ! | TCAAATTAGTCAATCTAAAC+AGG | + | chr7.2:2250463-2250482 | None:intergenic | 25.0% |
| !! | AGCAGAATTGTTGAATTTTT+GGG | + | chr7.2:2251007-2251026 | None:intergenic | 25.0% |
| !! | ATGTTTTCTTTTACTACTCA+TGG | - | chr7.2:2249949-2249968 | MS.gene024570:intron | 25.0% |
| !! | TCCAATTGATTTATGTGTAT+TGG | - | chr7.2:2251355-2251374 | MS.gene024570:intron | 25.0% |
| !!! | CAATAATAGTATTGATTCTG+AGG | - | chr7.2:2249130-2249149 | MS.gene024570:CDS | 25.0% |
| !!! | TAGTTTTGATTCTTCAAAGT+TGG | - | chr7.2:2249871-2249890 | MS.gene024570:CDS | 25.0% |
| AAAATCTTGATCCAAGTAGT+AGG | + | chr7.2:2251125-2251144 | None:intergenic | 30.0% | |
| AAAGATATCAAAGTTGCTGT+TGG | - | chr7.2:2250244-2250263 | MS.gene024570:intron | 30.0% | |
| ATGGGAATGTCATTATTTGA+TGG | - | chr7.2:2251507-2251526 | MS.gene024570:CDS | 30.0% | |
| ATGTGACTTTGGTAAAATCA+CGG | + | chr7.2:2249548-2249567 | None:intergenic | 30.0% | |
| GAGACAGTTAAAAGATTTAC+TGG | - | chr7.2:2251444-2251463 | MS.gene024570:intron | 30.0% | |
| GAGATACAACAAAGATGAAT+CGG | - | chr7.2:2248967-2248986 | MS.gene024570:CDS | 30.0% | |
| GCCAATACACATAAATCAAT+TGG | + | chr7.2:2251359-2251378 | None:intergenic | 30.0% | |
| GTTTATTATCGATGTGACTT+TGG | + | chr7.2:2249559-2249578 | None:intergenic | 30.0% | |
| TAATTAACAAGCACTCCTTT+GGG | + | chr7.2:2249799-2249818 | None:intergenic | 30.0% | |
| TACGTGTATGTTTGGATATT+CGG | - | chr7.2:2249389-2249408 | MS.gene024570:intron | 30.0% | |
| TATTAGGTCTCTGAATTAAG+AGG | - | chr7.2:2250943-2250962 | MS.gene024570:intron | 30.0% | |
| TGGTAAATACATTGAAGGAA+AGG | - | chr7.2:2250122-2250141 | MS.gene024570:intron | 30.0% | |
| TGTTGAAACATTAAGAGCAA+AGG | - | chr7.2:2251053-2251072 | MS.gene024570:intron | 30.0% | |
| ! | AAGATATCAAAGTTGCTGTT+GGG | - | chr7.2:2250245-2250264 | MS.gene024570:intron | 30.0% |
| ! | ATAGCTTTTGAATATTACGG+TGG | + | chr7.2:2249431-2249450 | None:intergenic | 30.0% |
| ! | CACAATTTTACGTGTATGTT+TGG | - | chr7.2:2249381-2249400 | MS.gene024570:intron | 30.0% |
| ! | CAGCAGAATTGTTGAATTTT+TGG | + | chr7.2:2251008-2251027 | None:intergenic | 30.0% |
| ! | GTGTGCATATGTTAATCTTT+TGG | + | chr7.2:2249364-2249383 | None:intergenic | 30.0% |
| ! | GTTGTTCACGTAAAAACTTT+TGG | + | chr7.2:2249013-2249032 | None:intergenic | 30.0% |
| ! | TTTTACTACTCATGGCAATA+GGG | - | chr7.2:2249957-2249976 | MS.gene024570:intron | 30.0% |
| !! | ATTAATTTGCGAAATTGGGA+TGG | - | chr7.2:2249518-2249537 | MS.gene024570:intron | 30.0% |
| !! | TATTGATTCTGAGGATTATC+AGG | - | chr7.2:2249139-2249158 | MS.gene024570:CDS | 30.0% |
| !!! | GATTTTGAGATTGACATCAA+CGG | + | chr7.2:2249111-2249130 | None:intergenic | 30.0% |
| !!! | TCTCATTTTTAAGGTGAAGA+TGG | - | chr7.2:2251416-2251435 | MS.gene024570:intron | 30.0% |
| AAACATGCACAAAATCACGA+TGG | + | chr7.2:2249485-2249504 | None:intergenic | 35.0% | |
| AAATTATTTGAGGGAGATCG+TGG | - | chr7.2:2250510-2250529 | MS.gene024570:intron | 35.0% | |
| AAGCTTAGATGAAAACCTAG+TGG | + | chr7.2:2249741-2249760 | None:intergenic | 35.0% | |
| AATGCTTCCCGATCTATTAT+TGG | + | chr7.2:2251646-2251665 | None:intergenic | 35.0% | |
| ACAATCAAGTCAACAACAAG+TGG | - | chr7.2:2250298-2250317 | MS.gene024570:intron | 35.0% | |
| AGAAGAGAATGCAGAAGAAA+TGG | + | chr7.2:2250861-2250880 | None:intergenic | 35.0% | |
| AGTTTACACAGTCAGTACAT+CGG | - | chr7.2:2251164-2251183 | MS.gene024570:intron | 35.0% | |
| ATTGTAACAGCAGGTTTCTT+TGG | + | chr7.2:2250283-2250302 | None:intergenic | 35.0% | |
| CCAAACAATTATCAACCCAA+AGG | - | chr7.2:2249781-2249800 | MS.gene024570:intron | 35.0% | |
| CTAATTAACAAGCACTCCTT+TGG | + | chr7.2:2249800-2249819 | None:intergenic | 35.0% | |
| GAGGGAGAGATTAATATGAA+TGG | - | chr7.2:2250343-2250362 | MS.gene024570:CDS | 35.0% | |
| GTGACTGCTTAGATTAAGAT+CGG | - | chr7.2:2251186-2251205 | MS.gene024570:intron | 35.0% | |
| GTGCATGTTTGATATTACAG+CGG | - | chr7.2:2249495-2249514 | MS.gene024570:intron | 35.0% | |
| GTTGAAGTTGAAGATGAAGA+AGG | + | chr7.2:2249071-2249090 | None:intergenic | 35.0% | |
| TCAGACATTGCATTAAACAC+CGG | + | chr7.2:2251477-2251496 | None:intergenic | 35.0% | |
| TGGATATTCGGTCAAAATCA+CGG | - | chr7.2:2249401-2249420 | MS.gene024570:intron | 35.0% | |
| TGTCTGCATATGTGAAAACA+TGG | - | chr7.2:2250102-2250121 | MS.gene024570:intron | 35.0% | |
| TTATTTGGATCTTCTTGCAC+AGG | + | chr7.2:2251567-2251586 | None:intergenic | 35.0% | |
| TTTAACTGAGCTTGAAACAC+AGG | - | chr7.2:2250813-2250832 | MS.gene024570:intron | 35.0% | |
| TTTCAGGATGCTCTCTAATA+GGG | - | chr7.2:2250753-2250772 | MS.gene024570:intron | 35.0% | |
| ! | AATGTCTGAGGTATCATCAA+TGG | - | chr7.2:2251488-2251507 | MS.gene024570:CDS | 35.0% |
| ! | AATTGGAAATGGATTCCTTC+TGG | + | chr7.2:2251342-2251361 | None:intergenic | 35.0% |
| ! | AGATATCAAAGTTGCTGTTG+GGG | - | chr7.2:2250246-2250265 | MS.gene024570:intron | 35.0% |
| ! | ATGTCTGAGGTATCATCAAT+GGG | - | chr7.2:2251489-2251508 | MS.gene024570:CDS | 35.0% |
| ! | CTGAAATAACGGAGCAATAT+TGG | - | chr7.2:2248919-2248938 | MS.gene024570:CDS | 35.0% |
| ! | CTTTTACTACTCATGGCAAT+AGG | - | chr7.2:2249956-2249975 | MS.gene024570:intron | 35.0% |
| ! | GTTTTGCACAAGAAATCTTC+TGG | - | chr7.2:2250410-2250429 | MS.gene024570:CDS | 35.0% |
| ! | TTACTCGTTTTGCATCAGTA+GGG | + | chr7.2:2250375-2250394 | None:intergenic | 35.0% |
| !! | AGCGGATTAATTTGCGAAAT+TGG | - | chr7.2:2249513-2249532 | MS.gene024570:intron | 35.0% |
| !! | CCTTTGGGTTGATAATTGTT+TGG | + | chr7.2:2249784-2249803 | None:intergenic | 35.0% |
| !! | GCGGATTAATTTGCGAAATT+GGG | - | chr7.2:2249514-2249533 | MS.gene024570:intron | 35.0% |
| AAACCTTTCAAAGTAGCCAG+AGG | + | chr7.2:2250047-2250066 | None:intergenic | 40.0% | |
| AAATCTCAGGATCCTGACAA+TGG | - | chr7.2:2249990-2250009 | MS.gene024570:intron | 40.0% | |
| AAGATTTACTGGATCGAACC+CGG | - | chr7.2:2251455-2251474 | MS.gene024570:intron | 40.0% | |
| AGACACTAGCACTTGTTCTA+AGG | + | chr7.2:2249645-2249664 | None:intergenic | 40.0% | |
| AGAGGAGCCAATAATAGATC+GGG | - | chr7.2:2251636-2251655 | MS.gene024570:CDS | 40.0% | |
| ATGTCCAGTCATGATATGAG+AGG | - | chr7.2:2251618-2251637 | MS.gene024570:CDS | 40.0% | |
| CAGACATTGCATTAAACACC+GGG | + | chr7.2:2251476-2251495 | None:intergenic | 40.0% | |
| CATGATTCATGCATTCCACT+AGG | - | chr7.2:2249723-2249742 | MS.gene024570:CDS | 40.0% | |
| CCAAGTTCAGAAGGATAAGA+TGG | + | chr7.2:2250023-2250042 | None:intergenic | 40.0% | |
| CCATCTTATCCTTCTGAACT+TGG | - | chr7.2:2250020-2250039 | MS.gene024570:intron | 40.0% | |
| CTGATGCAAAACGAGTAAGA+AGG | - | chr7.2:2250377-2250396 | MS.gene024570:CDS | 40.0% | |
| CTTTCAGGATGCTCTCTAAT+AGG | - | chr7.2:2250752-2250771 | MS.gene024570:intron | 40.0% | |
| GAATCGGAGTGATTCAGAAT+GGG | - | chr7.2:2248983-2249002 | MS.gene024570:CDS | 40.0% | |
| GAATGCATGAATCATGCCAT+TGG | + | chr7.2:2249719-2249738 | None:intergenic | 40.0% | |
| GAGAGGAGCCAATAATAGAT+CGG | - | chr7.2:2251635-2251654 | MS.gene024570:CDS | 40.0% | |
| GGTGTTTAATGCAATGTCTG+AGG | - | chr7.2:2251476-2251495 | MS.gene024570:intron | 40.0% | |
| GGTTACTACTGGATTCAGAT+TGG | + | chr7.2:2251285-2251304 | None:intergenic | 40.0% | |
| GGTTATAGAAGCCTACTACT+TGG | - | chr7.2:2251111-2251130 | MS.gene024570:intron | 40.0% | |
| TAGATGGATCGTTTCCAGAA+GGG | + | chr7.2:2250213-2250232 | None:intergenic | 40.0% | |
| TGAATCGGAGTGATTCAGAA+TGG | - | chr7.2:2248982-2249001 | MS.gene024570:CDS | 40.0% | |
| TTAGATGGATCGTTTCCAGA+AGG | + | chr7.2:2250214-2250233 | None:intergenic | 40.0% | |
| ! | CTTACTCGTTTTGCATCAGT+AGG | + | chr7.2:2250376-2250395 | None:intergenic | 40.0% |
| ! | GATTCCTTCTGGTTGGAATA+TGG | + | chr7.2:2251331-2251350 | None:intergenic | 40.0% |
| ! | TTTGAGATTGACATCAACGG+TGG | + | chr7.2:2249108-2249127 | None:intergenic | 40.0% |
| !! | ACTAGCACTTGTTCTAAGGT+AGG | + | chr7.2:2249641-2249660 | None:intergenic | 40.0% |
| !! | ACTTGTTCTAAGGTAGGAGA+AGG | + | chr7.2:2249635-2249654 | None:intergenic | 40.0% |
| !! | CTATTAGAGAGCATCCTGAA+AGG | + | chr7.2:2250754-2250773 | None:intergenic | 40.0% |
| !! | GTACTGACTGTGTAAACTCA+AGG | + | chr7.2:2251162-2251181 | None:intergenic | 40.0% |
| !! | GTTGACTTGATTGTAACAGC+AGG | + | chr7.2:2250292-2250311 | None:intergenic | 40.0% |
| AAGTGGATCATCAGACGATG+AGG | - | chr7.2:2250315-2250334 | MS.gene024570:CDS | 45.0% | |
| ATATACCCTCGACTTAGCGA+CGG | + | chr7.2:2249201-2249220 | None:intergenic | 45.0% | |
| ATTCAACCTCAGTGGTGCTT+TGG | - | chr7.2:2251218-2251237 | MS.gene024570:intron | 45.0% | |
| CATCTTCAGAGTCGAATTCG+TGG | - | chr7.2:2251759-2251778 | MS.gene024570:CDS | 45.0% | |
| CTCATGGCAATAGGGATCTT+TGG | - | chr7.2:2249965-2249984 | MS.gene024570:intron | 45.0% | |
| GGGATCTTTGGTCAAATCTC+AGG | - | chr7.2:2249977-2249996 | MS.gene024570:intron | 45.0% | |
| GTGTGGCAATCTGCTTTCAT+GGG | - | chr7.2:2249329-2249348 | MS.gene024570:intron | 45.0% | |
| TCCTGAAAGGCAATGTCATC+AGG | + | chr7.2:2250741-2250760 | None:intergenic | 45.0% | |
| TGCTTGAGATTCAACCTCAG+TGG | - | chr7.2:2251210-2251229 | MS.gene024570:intron | 45.0% | |
| TGTGTGGCAATCTGCTTTCA+TGG | - | chr7.2:2249328-2249347 | MS.gene024570:intron | 45.0% | |
| ! | GAAAATCCAAAGCACCACTG+AGG | + | chr7.2:2251227-2251246 | None:intergenic | 45.0% |
| ! | GGAAATGGATTCCTTCTGGT+TGG | + | chr7.2:2251338-2251357 | None:intergenic | 45.0% |
| ! | TTGACTTCGAAAGCGTGCAA+GGG | - | chr7.2:2248942-2248961 | MS.gene024570:CDS | 45.0% |
| ACGAACAAATTCCCTGCCAC+GGG | - | chr7.2:2251722-2251741 | MS.gene024570:CDS | 50.0% | |
| AGTCAGGCAAGGGTTACTAC+TGG | + | chr7.2:2251296-2251315 | None:intergenic | 50.0% | |
| ATCAGACGATGAGGAAGCTG+AGG | - | chr7.2:2250324-2250343 | MS.gene024570:CDS | 50.0% | |
| CCAGCCATATTCCAACCAGA+AGG | - | chr7.2:2251324-2251343 | MS.gene024570:intron | 50.0% | |
| CTTCAGAGTCGAATTCGTGG+TGG | - | chr7.2:2251762-2251781 | MS.gene024570:CDS | 50.0% | |
| GACGAACAAATTCCCTGCCA+CGG | - | chr7.2:2251721-2251740 | MS.gene024570:CDS | 50.0% | |
| GATGGCTGTGATCCATTGTC+AGG | + | chr7.2:2250005-2250024 | None:intergenic | 50.0% | |
| GCAGGTTTCTTTGGCATGCA+AGG | + | chr7.2:2250274-2250293 | None:intergenic | 50.0% | |
| GCATCAGCTGATGACTCAGA+AGG | + | chr7.2:2251537-2251556 | None:intergenic | 50.0% | |
| GCCTGATGACATTGCCTTTC+AGG | - | chr7.2:2250737-2250756 | MS.gene024570:intron | 50.0% | |
| GGCTCCTCTCATATCATGAC+TGG | + | chr7.2:2251625-2251644 | None:intergenic | 50.0% | |
| TATCTTGTTCCCACCTGCTG+CGG | + | chr7.2:2251700-2251719 | None:intergenic | 50.0% | |
| TATGTAGAATGCGGCCCTTC+TGG | - | chr7.2:2250196-2250215 | MS.gene024570:intron | 50.0% | |
| TCAGACGATGAGGAAGCTGA+GGG | - | chr7.2:2250325-2250344 | MS.gene024570:CDS | 50.0% | |
| TCCTTCTGAACTTGGACCTC+TGG | - | chr7.2:2250028-2250047 | MS.gene024570:intron | 50.0% | |
| TCTTCGTCTTGAGCGTCTAG+CGG | + | chr7.2:2250782-2250801 | None:intergenic | 50.0% | |
| ! | CCTTCTGGTTGGAATATGGC+TGG | + | chr7.2:2251327-2251346 | None:intergenic | 50.0% |
| ! | GGACCTCTGGCTACTTTGAA+AGG | - | chr7.2:2250041-2250060 | MS.gene024570:intron | 50.0% |
| ! | GTTGACTTCGAAAGCGTGCA+AGG | - | chr7.2:2248941-2248960 | MS.gene024570:CDS | 50.0% |
| AACAAATTCCCTGCCACGGG+TGG | - | chr7.2:2251725-2251744 | MS.gene024570:CDS | 55.0% | |
| AGAAGAACACCGCAGCAGGT+GGG | - | chr7.2:2251688-2251707 | MS.gene024570:CDS | 55.0% | |
| ATGGCTGGATTCACGCAGTC+AGG | + | chr7.2:2251312-2251331 | None:intergenic | 55.0% | |
| GCAGCAGGTGGGAACAAGAT+AGG | - | chr7.2:2251699-2251718 | MS.gene024570:CDS | 55.0% | |
| GCCAGAGGTCCAAGTTCAGA+AGG | + | chr7.2:2250032-2250051 | None:intergenic | 55.0% | |
| GGATTCACGCAGTCAGGCAA+GGG | + | chr7.2:2251306-2251325 | None:intergenic | 55.0% | |
| GGCGCAAGCAAGATCAAGCT+TGG | + | chr7.2:2249177-2249196 | None:intergenic | 55.0% | |
| TGGATTCACGCAGTCAGGCA+AGG | + | chr7.2:2251307-2251326 | None:intergenic | 55.0% | |
| ! | ACTTCGAAAGCGTGCAAGGG+AGG | - | chr7.2:2248945-2248964 | MS.gene024570:CDS | 55.0% |
| CAGAAGAACACCGCAGCAGG+TGG | - | chr7.2:2251687-2251706 | MS.gene024570:CDS | 60.0% | |
| GTGCAGAAGAACACCGCAGC+AGG | - | chr7.2:2251684-2251703 | MS.gene024570:CDS | 60.0% | |
| TACCCTCGACTTAGCGACGG+CGG | + | chr7.2:2249198-2249217 | None:intergenic | 60.0% | |
| TGTTCCAAGCTAGCCACCCG+TGG | + | chr7.2:2251741-2251760 | None:intergenic | 60.0% | |
| CAAGCTAGCCACCCGTGGCA+GGG | + | chr7.2:2251736-2251755 | None:intergenic | 65.0% | |
| CCAAGCTAGCCACCCGTGGC+AGG | + | chr7.2:2251737-2251756 | None:intergenic | 70.0% | |
| CGCCGCCGTCGCTAAGTCGA+GGG | - | chr7.2:2249193-2249212 | MS.gene024570:CDS | 70.0% | |
| ! | CCTGCCACGGGTGGCTAGCT+TGG | - | chr7.2:2251734-2251753 | MS.gene024570:CDS | 70.0% |
| GCGCCGCCGTCGCTAAGTCG+AGG | - | chr7.2:2249192-2249211 | MS.gene024570:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 2248897 | 2251803 | 2248897 | ID=MS.gene024570 |
| chr7.2 | mRNA | 2248897 | 2251803 | 2248897 | ID=MS.gene024570.t1;Parent=MS.gene024570 |
| chr7.2 | exon | 2251486 | 2251803 | 2251486 | ID=MS.gene024570.t1.exon1;Parent=MS.gene024570.t1 |
| chr7.2 | CDS | 2251486 | 2251803 | 2251486 | ID=cds.MS.gene024570.t1;Parent=MS.gene024570.t1 |
| chr7.2 | exon | 2250638 | 2250722 | 2250638 | ID=MS.gene024570.t1.exon2;Parent=MS.gene024570.t1 |
| chr7.2 | CDS | 2250638 | 2250722 | 2250638 | ID=cds.MS.gene024570.t1;Parent=MS.gene024570.t1 |
| chr7.2 | exon | 2250302 | 2250497 | 2250302 | ID=MS.gene024570.t1.exon3;Parent=MS.gene024570.t1 |
| chr7.2 | CDS | 2250302 | 2250497 | 2250302 | ID=cds.MS.gene024570.t1;Parent=MS.gene024570.t1 |
| chr7.2 | exon | 2249866 | 2249941 | 2249866 | ID=MS.gene024570.t1.exon4;Parent=MS.gene024570.t1 |
| chr7.2 | CDS | 2249866 | 2249941 | 2249866 | ID=cds.MS.gene024570.t1;Parent=MS.gene024570.t1 |
| chr7.2 | exon | 2249626 | 2249751 | 2249626 | ID=MS.gene024570.t1.exon5;Parent=MS.gene024570.t1 |
| chr7.2 | CDS | 2249626 | 2249751 | 2249626 | ID=cds.MS.gene024570.t1;Parent=MS.gene024570.t1 |
| chr7.2 | exon | 2248897 | 2249271 | 2248897 | ID=MS.gene024570.t1.exon6;Parent=MS.gene024570.t1 |
| chr7.2 | CDS | 2248897 | 2249271 | 2248897 | ID=cds.MS.gene024570.t1;Parent=MS.gene024570.t1 |
| Gene Sequence |
| Protein sequence |
