Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024639.t1 | XP_003611074.1 | 90.9 | 252 | 21 | 2 | 1 | 251 | 1 | 251 | 7.70E-123 | 449.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024639.t1 | G7KC16 | 90.9 | 252 | 21 | 2 | 1 | 251 | 1 | 251 | 5.6e-123 | 449.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene024639.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024639.t1 | MTR_5g010120 | 90.873 | 252 | 21 | 2 | 1 | 251 | 1 | 251 | 6.68e-161 | 446 |
MS.gene024639.t1 | MTR_8g098725 | 49.010 | 202 | 70 | 5 | 65 | 240 | 97 | 291 | 1.21e-52 | 173 |
MS.gene024639.t1 | MTR_8g098725 | 47.087 | 206 | 72 | 5 | 65 | 240 | 97 | 295 | 1.02e-50 | 169 |
MS.gene024639.t1 | MTR_2g068730 | 54.545 | 88 | 37 | 1 | 148 | 232 | 136 | 223 | 2.07e-22 | 93.2 |
MS.gene024639.t1 | MTR_1g044785 | 47.917 | 96 | 41 | 2 | 141 | 236 | 107 | 193 | 9.22e-20 | 85.1 |
MS.gene024639.t1 | MTR_2g096080 | 41.739 | 115 | 45 | 2 | 129 | 221 | 90 | 204 | 1.00e-19 | 85.5 |
MS.gene024639.t1 | MTR_1g073350 | 51.948 | 77 | 37 | 0 | 139 | 215 | 283 | 359 | 6.36e-19 | 85.5 |
MS.gene024639.t1 | MTR_4g061823 | 36.913 | 149 | 66 | 4 | 89 | 221 | 58 | 194 | 1.16e-17 | 79.7 |
MS.gene024639.t1 | MTR_4g061910 | 36.913 | 149 | 66 | 4 | 89 | 221 | 58 | 194 | 1.16e-17 | 79.7 |
MS.gene024639.t1 | MTR_1g008220 | 48.276 | 87 | 38 | 2 | 138 | 220 | 194 | 277 | 6.17e-17 | 78.6 |
MS.gene024639.t1 | MTR_3g091340 | 44.444 | 90 | 44 | 2 | 138 | 222 | 163 | 251 | 1.62e-14 | 71.2 |
MS.gene024639.t1 | MTR_3g091340 | 44.444 | 90 | 44 | 2 | 138 | 222 | 192 | 280 | 1.86e-14 | 71.6 |
MS.gene024639.t1 | MTR_3g091340 | 44.444 | 90 | 44 | 2 | 138 | 222 | 156 | 244 | 1.88e-14 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024639.t1 | AT5G41380 | 48.649 | 185 | 71 | 7 | 58 | 221 | 83 | 264 | 1.59e-40 | 142 |
MS.gene024639.t1 | AT1G63820 | 49.342 | 152 | 54 | 5 | 117 | 248 | 117 | 265 | 2.41e-35 | 128 |
MS.gene024639.t1 | AT3G12890 | 51.546 | 97 | 44 | 2 | 154 | 250 | 121 | 214 | 9.08e-22 | 91.3 |
MS.gene024639.t1 | AT1G04500 | 51.685 | 89 | 38 | 2 | 147 | 234 | 262 | 346 | 1.07e-19 | 87.4 |
MS.gene024639.t1 | AT1G04500 | 51.685 | 89 | 38 | 2 | 147 | 234 | 262 | 346 | 1.07e-19 | 87.4 |
MS.gene024639.t1 | AT1G04500 | 51.685 | 89 | 38 | 2 | 147 | 234 | 253 | 337 | 1.23e-19 | 87.4 |
MS.gene024639.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 302 | 358 | 4.37e-18 | 83.2 |
MS.gene024639.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 301 | 357 | 4.47e-18 | 83.2 |
MS.gene024639.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 290 | 346 | 5.08e-18 | 82.8 |
MS.gene024639.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 310 | 366 | 5.09e-18 | 82.8 |
MS.gene024639.t1 | AT4G27900 | 48.315 | 89 | 37 | 3 | 138 | 222 | 178 | 261 | 3.92e-16 | 75.9 |
MS.gene024639.t1 | AT4G27900 | 48.315 | 89 | 37 | 3 | 138 | 222 | 178 | 261 | 3.92e-16 | 75.9 |
MS.gene024639.t1 | AT5G53420 | 44.318 | 88 | 47 | 2 | 129 | 216 | 177 | 262 | 2.19e-15 | 73.9 |
MS.gene024639.t1 | AT5G53420 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.69e-15 | 72.4 |
MS.gene024639.t1 | AT5G53420 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.69e-15 | 72.4 |
MS.gene024639.t1 | AT5G53420 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.69e-15 | 72.4 |
MS.gene024639.t1 | AT5G59990 | 43.103 | 116 | 56 | 3 | 136 | 243 | 119 | 232 | 4.03e-14 | 70.1 |
Find 52 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCATGCCATTGGAAATT+TGG | 0.108434 | 5.1:-3620003 | None:intergenic |
TGTTTGGGCTTGAATGTTTA+TGG | 0.196449 | 5.1:-3619690 | None:intergenic |
ATTCATGCCATTGGAAATTT+GGG | 0.264246 | 5.1:-3620002 | None:intergenic |
ATCATCATGAAGACGAGTTC+TGG | 0.270661 | 5.1:+3620862 | MS.gene024639:CDS |
CAAAGTAGGGCGTTACAATT+TGG | 0.279002 | 5.1:+3620356 | MS.gene024639:CDS |
GGATCATAAGAGACTTTGTT+TGG | 0.295719 | 5.1:-3619706 | None:intergenic |
AGCTCCTCTGCATTAACTTT+TGG | 0.308354 | 5.1:-3619909 | None:intergenic |
GGAAATTTCTCTACTTTGGA+TGG | 0.338370 | 5.1:+3619835 | MS.gene024639:CDS |
GAACTTCCTCCGGCTTCTCT+TGG | 0.364020 | 5.1:-3620412 | None:intergenic |
GCTTGGAAATTTCTCTACTT+TGG | 0.370290 | 5.1:+3619831 | MS.gene024639:CDS |
GAAGTTCAACAAGATTATTA+AGG | 0.398859 | 5.1:+3620428 | MS.gene024639:CDS |
GTGCAGTGCAGGAGATTTGC+AGG | 0.405645 | 5.1:+3620071 | MS.gene024639:CDS |
GATTGTCGGCTAGTGTCTTT+CGG | 0.419573 | 5.1:-3620758 | None:intergenic |
ATTTAGGTTGATTTCATTGA+AGG | 0.428619 | 5.1:+3621001 | MS.gene024639:intron |
TAATCTTGTTGAACTTCCTC+CGG | 0.431668 | 5.1:-3620422 | None:intergenic |
GGGAGTCCATCTGTGTGTTA+TGG | 0.434607 | 5.1:-3619981 | None:intergenic |
GAAAACTGAGGAATGTCAAA+TGG | 0.438264 | 5.1:+3619867 | MS.gene024639:CDS |
GCACGCCCTTCTTATTTGTC+CGG | 0.440631 | 5.1:-3620052 | None:intergenic |
TGTTGTTGTGATCTTAATAG+AGG | 0.449547 | 5.1:-3621039 | None:intergenic |
GATCATAAGAGACTTTGTTT+GGG | 0.452048 | 5.1:-3619705 | None:intergenic |
TCTTCTCCAACCAGTGAGCT+TGG | 0.454671 | 5.1:+3619814 | MS.gene024639:CDS |
ACGTATGCGTGTTCGATTGT+CGG | 0.459741 | 5.1:-3620772 | None:intergenic |
GAAATTTCTCTACTTTGGAT+GGG | 0.461348 | 5.1:+3619836 | MS.gene024639:CDS |
ATAAGAAGGGCGTGCAGTGC+AGG | 0.462306 | 5.1:+3620060 | MS.gene024639:CDS |
GATGAAGTAAACTTCAAAGT+AGG | 0.477302 | 5.1:+3620342 | MS.gene024639:CDS |
TCATCATGAAGACGAGTTCT+GGG | 0.484075 | 5.1:+3620863 | MS.gene024639:CDS |
GATCAGAACATGGCAACACC+TGG | 0.484597 | 5.1:+3620309 | MS.gene024639:intron |
CTGTTTCAATGTAATTGAAA+GGG | 0.489672 | 5.1:-3619735 | None:intergenic |
ACTGTTTCAATGTAATTGAA+AGG | 0.489675 | 5.1:-3619736 | None:intergenic |
TTTAGGTTGATTTCATTGAA+GGG | 0.494868 | 5.1:+3621002 | MS.gene024639:intron |
GGGAGCTCAATTCATGCCAT+TGG | 0.496254 | 5.1:-3620011 | None:intergenic |
GGCAACACCTGGGTCTCAAA+CGG | 0.500495 | 5.1:+3620320 | MS.gene024639:CDS |
GATATAGAGCCAAGAGAAGC+CGG | 0.504164 | 5.1:+3620403 | MS.gene024639:CDS |
ACTTCATCCGTTTGAGACCC+AGG | 0.512208 | 5.1:-3620327 | None:intergenic |
TCTTCACCGGACAAATAAGA+AGG | 0.514231 | 5.1:+3620046 | MS.gene024639:CDS |
AGAGAAATTTCCAAGCTCAC+TGG | 0.521246 | 5.1:-3619824 | None:intergenic |
TTACATTGAAACAGTTCAAG+AGG | 0.525691 | 5.1:+3619744 | MS.gene024639:CDS |
CCCGAAAATAGTTTCTTCAC+CGG | 0.538362 | 5.1:+3620033 | MS.gene024639:CDS |
ATGAAGTAAACTTCAAAGTA+GGG | 0.543162 | 5.1:+3620343 | MS.gene024639:CDS |
AAAACTGAGGAATGTCAAAT+GGG | 0.562447 | 5.1:+3619868 | MS.gene024639:CDS |
AAATTTCCAAGCTCACTGGT+TGG | 0.575257 | 5.1:-3619820 | None:intergenic |
ATGTAATTGAAAGGGTAATG+AGG | 0.586254 | 5.1:-3619727 | None:intergenic |
AGCTTACCATAACACACAGA+TGG | 0.590460 | 5.1:+3619975 | MS.gene024639:CDS |
TTCATGCCATTGGAAATTTG+GGG | 0.622889 | 5.1:-3620001 | None:intergenic |
CTTCACCGGACAAATAAGAA+GGG | 0.624611 | 5.1:+3620047 | MS.gene024639:CDS |
TGGACTCCCCAAATTTCCAA+TGG | 0.637971 | 5.1:+3619995 | MS.gene024639:CDS |
GTGTTATGGTAAGCTTCAGA+AGG | 0.638279 | 5.1:-3619967 | None:intergenic |
ATCAGAACATGGCAACACCT+GGG | 0.639682 | 5.1:+3620310 | MS.gene024639:intron |
GACAATCGAACACGCATACG+TGG | 0.645981 | 5.1:+3620774 | MS.gene024639:CDS |
TGGGTCTCGTTTGAAAACTG+AGG | 0.669045 | 5.1:+3619855 | MS.gene024639:CDS |
ACTACCAAAAGTTAATGCAG+AGG | 0.669632 | 5.1:+3619905 | MS.gene024639:CDS |
ATAGAGCCAAGAGAAGCCGG+AGG | 0.708071 | 5.1:+3620406 | MS.gene024639:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTCATTTTTTAAATGTA+GGG | + | chr5.1:3620193-3620212 | MS.gene024639:intron | 10.0% |
!! | ACTAGTAATAAAATAATTGA+AGG | + | chr5.1:3620631-3620650 | MS.gene024639:intron | 15.0% |
!! | ATGATTAAATTAATACGTAT+CGG | - | chr5.1:3620175-3620194 | None:intergenic | 15.0% |
!! | ATTTAGAAACAAAAAATATG+TGG | - | chr5.1:3620688-3620707 | None:intergenic | 15.0% |
!! | TTCAGATTAAAAAATGTATA+TGG | + | chr5.1:3620146-3620165 | MS.gene024639:intron | 15.0% |
!!! | ATTTTTTGTTTCTAAATATG+TGG | + | chr5.1:3620691-3620710 | MS.gene024639:intron | 15.0% |
!!! | CATTTTCATTTTTTAAATGT+AGG | + | chr5.1:3620192-3620211 | MS.gene024639:intron | 15.0% |
!!! | TATTATTGAGGTTTTTATTT+AGG | + | chr5.1:3620985-3621004 | MS.gene024639:intron | 15.0% |
!!! | TTTAATTTGATCTGTATTAA+AGG | + | chr5.1:3620273-3620292 | MS.gene024639:intron | 15.0% |
!! | TCAAATAATAGACATAAACA+CGG | - | chr5.1:3620227-3620246 | None:intergenic | 20.0% |
!!! | ATTTTTTTTTTTACTTCCGA+GGG | - | chr5.1:3620555-3620574 | None:intergenic | 20.0% |
!!! | TCTTTTGTTGTTTTTAATTG+TGG | + | chr5.1:3620716-3620735 | MS.gene024639:intron | 20.0% |
! | AAAATATATATGGTAAGCCA+CGG | - | chr5.1:3620113-3620132 | None:intergenic | 25.0% |
! | ACTGTTTCAATGTAATTGAA+AGG | - | chr5.1:3619739-3619758 | None:intergenic | 25.0% |
! | ATGAAGTAAACTTCAAAGTA+GGG | + | chr5.1:3620343-3620362 | MS.gene024639:CDS | 25.0% |
! | CTGTTTCAATGTAATTGAAA+GGG | - | chr5.1:3619738-3619757 | None:intergenic | 25.0% |
! | GAAGTTCAACAAGATTATTA+AGG | + | chr5.1:3620428-3620447 | MS.gene024639:CDS | 25.0% |
! | TGGATGCTCAAAAATATATA+TGG | - | chr5.1:3620123-3620142 | None:intergenic | 25.0% |
!! | ATGTGGTGTTAATATTATTG+AGG | + | chr5.1:3620973-3620992 | MS.gene024639:intron | 25.0% |
!! | GTCTATTATTTGATAGTAGA+TGG | + | chr5.1:3620234-3620253 | MS.gene024639:intron | 25.0% |
!!! | ACATTTTTTAATCTGAAGTG+TGG | - | chr5.1:3620143-3620162 | None:intergenic | 25.0% |
!!! | ATTTAGGTTGATTTCATTGA+AGG | + | chr5.1:3621001-3621020 | MS.gene024639:intron | 25.0% |
!!! | CATTTTTTTTTTTACTTCCG+AGG | - | chr5.1:3620556-3620575 | None:intergenic | 25.0% |
!!! | TTTAGGTTGATTTCATTGAA+GGG | + | chr5.1:3621002-3621021 | MS.gene024639:intron | 25.0% |
AAAACTGAGGAATGTCAAAT+GGG | + | chr5.1:3619868-3619887 | MS.gene024639:CDS | 30.0% | |
AATTCATGCCATTGGAAATT+TGG | - | chr5.1:3620006-3620025 | None:intergenic | 30.0% | |
AGAAAAAGAAAAGAAGGAAG+AGG | - | chr5.1:3619797-3619816 | None:intergenic | 30.0% | |
ATGTAATTGAAAGGGTAATG+AGG | - | chr5.1:3619730-3619749 | None:intergenic | 30.0% | |
ATTCATGCCATTGGAAATTT+GGG | - | chr5.1:3620005-3620024 | None:intergenic | 30.0% | |
GAAATTTCTCTACTTTGGAT+GGG | + | chr5.1:3619836-3619855 | MS.gene024639:CDS | 30.0% | |
GATGAAGTAAACTTCAAAGT+AGG | + | chr5.1:3620342-3620361 | MS.gene024639:CDS | 30.0% | |
GTTTAATACTTGCATCAATG+TGG | + | chr5.1:3620956-3620975 | MS.gene024639:intron | 30.0% | |
TGGAGAAGAAAAAGAAAAGA+AGG | - | chr5.1:3619803-3619822 | None:intergenic | 30.0% | |
TTACATTGAAACAGTTCAAG+AGG | + | chr5.1:3619744-3619763 | MS.gene024639:CDS | 30.0% | |
! | GATCATAAGAGACTTTGTTT+GGG | - | chr5.1:3619708-3619727 | None:intergenic | 30.0% |
!!! | TTTTCTGTTTTTGAACACAC+AGG | - | chr5.1:3620840-3620859 | None:intergenic | 30.0% |
ACAAAAGAAAGTTGTTCCCT+CGG | + | chr5.1:3620536-3620555 | MS.gene024639:intron | 35.0% | |
ACTACCAAAAGTTAATGCAG+AGG | + | chr5.1:3619905-3619924 | MS.gene024639:CDS | 35.0% | |
GAAAACTGAGGAATGTCAAA+TGG | + | chr5.1:3619867-3619886 | MS.gene024639:CDS | 35.0% | |
GCTGTTTATTGATCAGAACA+TGG | + | chr5.1:3620299-3620318 | MS.gene024639:intron | 35.0% | |
GCTTGGAAATTTCTCTACTT+TGG | + | chr5.1:3619831-3619850 | MS.gene024639:CDS | 35.0% | |
GGAAATTTCTCTACTTTGGA+TGG | + | chr5.1:3619835-3619854 | MS.gene024639:CDS | 35.0% | |
GGATCATAAGAGACTTTGTT+TGG | - | chr5.1:3619709-3619728 | None:intergenic | 35.0% | |
GTTAAAATAACCTAACACCG+TGG | + | chr5.1:3620093-3620112 | MS.gene024639:intron | 35.0% | |
TAATCTTGTTGAACTTCCTC+CGG | - | chr5.1:3620425-3620444 | None:intergenic | 35.0% | |
TGTTTGGGCTTGAATGTTTA+TGG | - | chr5.1:3619693-3619712 | None:intergenic | 35.0% | |
TTCATGCCATTGGAAATTTG+GGG | - | chr5.1:3620004-3620023 | None:intergenic | 35.0% | |
! | GTTTTTGAACACACAGGTTT+TGG | - | chr5.1:3620834-3620853 | None:intergenic | 35.0% |
! | TCCGGTGAAGAAACTATTTT+CGG | - | chr5.1:3620037-3620056 | None:intergenic | 35.0% |
!! | CTGCATTAACTTTTGGTAGT+AGG | - | chr5.1:3619905-3619924 | None:intergenic | 35.0% |
AAATTTCCAAGCTCACTGGT+TGG | - | chr5.1:3619823-3619842 | None:intergenic | 40.0% | |
AGAGAAATTTCCAAGCTCAC+TGG | - | chr5.1:3619827-3619846 | None:intergenic | 40.0% | |
AGCTTACCATAACACACAGA+TGG | + | chr5.1:3619975-3619994 | MS.gene024639:CDS | 40.0% | |
AGTTCAGATATACCCCTTTC+AGG | - | chr5.1:3620500-3620519 | None:intergenic | 40.0% | |
ATCATCATGAAGACGAGTTC+TGG | + | chr5.1:3620862-3620881 | MS.gene024639:CDS | 40.0% | |
ATGCTCCAACATTACCTGAA+AGG | + | chr5.1:3620483-3620502 | MS.gene024639:intron | 40.0% | |
CCCGAAAATAGTTTCTTCAC+CGG | + | chr5.1:3620033-3620052 | MS.gene024639:CDS | 40.0% | |
CTTCACCGGACAAATAAGAA+GGG | + | chr5.1:3620047-3620066 | MS.gene024639:CDS | 40.0% | |
GTGTTATGGTAAGCTTCAGA+AGG | - | chr5.1:3619970-3619989 | None:intergenic | 40.0% | |
TCATCATGAAGACGAGTTCT+GGG | + | chr5.1:3620863-3620882 | MS.gene024639:CDS | 40.0% | |
TCTTCACCGGACAAATAAGA+AGG | + | chr5.1:3620046-3620065 | MS.gene024639:CDS | 40.0% | |
TGCTCCAACATTACCTGAAA+GGG | + | chr5.1:3620484-3620503 | MS.gene024639:intron | 40.0% | |
! | AGCTCCTCTGCATTAACTTT+TGG | - | chr5.1:3619912-3619931 | None:intergenic | 40.0% |
! | ATACCCCTTTCAGGTAATGT+TGG | - | chr5.1:3620491-3620510 | None:intergenic | 40.0% |
! | CAAAGTAGGGCGTTACAATT+TGG | + | chr5.1:3620356-3620375 | MS.gene024639:CDS | 40.0% |
! | CCGGTGAAGAAACTATTTTC+GGG | - | chr5.1:3620036-3620055 | None:intergenic | 40.0% |
! | CGGTGAAGAAACTATTTTCG+GGG | - | chr5.1:3620035-3620054 | None:intergenic | 40.0% |
! | GGTGAAGAAACTATTTTCGG+GGG | - | chr5.1:3620034-3620053 | None:intergenic | 40.0% |
ACGTATGCGTGTTCGATTGT+CGG | - | chr5.1:3620775-3620794 | None:intergenic | 45.0% | |
ATATGGTAAGCCACGGTGTT+AGG | - | chr5.1:3620106-3620125 | None:intergenic | 45.0% | |
ATCAGAACATGGCAACACCT+GGG | + | chr5.1:3620310-3620329 | MS.gene024639:intron | 45.0% | |
GATATAGAGCCAAGAGAAGC+CGG | + | chr5.1:3620403-3620422 | MS.gene024639:CDS | 45.0% | |
GCTCCAACATTACCTGAAAG+GGG | + | chr5.1:3620485-3620504 | MS.gene024639:intron | 45.0% | |
TGGACTCCCCAAATTTCCAA+TGG | + | chr5.1:3619995-3620014 | MS.gene024639:CDS | 45.0% | |
TGGGTCTCGTTTGAAAACTG+AGG | + | chr5.1:3619855-3619874 | MS.gene024639:CDS | 45.0% | |
TTTCGGCATGCATACTGTTG+TGG | - | chr5.1:3620744-3620763 | None:intergenic | 45.0% | |
! | GATTGTCGGCTAGTGTCTTT+CGG | - | chr5.1:3620761-3620780 | None:intergenic | 45.0% |
!!! | CACAGGTTTTGGAATCTCGT+TGG | - | chr5.1:3620823-3620842 | None:intergenic | 45.0% |
GACAATCGAACACGCATACG+TGG | + | chr5.1:3620774-3620793 | MS.gene024639:CDS | 50.0% | |
GATCAGAACATGGCAACACC+TGG | + | chr5.1:3620309-3620328 | MS.gene024639:intron | 50.0% | |
GGGAGCTCAATTCATGCCAT+TGG | - | chr5.1:3620014-3620033 | None:intergenic | 50.0% | |
GGGAGTCCATCTGTGTGTTA+TGG | - | chr5.1:3619984-3620003 | None:intergenic | 50.0% | |
TCTTCTCCAACCAGTGAGCT+TGG | + | chr5.1:3619814-3619833 | MS.gene024639:CDS | 50.0% | |
! | ACTTCATCCGTTTGAGACCC+AGG | - | chr5.1:3620330-3620349 | None:intergenic | 50.0% |
! | GCACGCCCTTCTTATTTGTC+CGG | - | chr5.1:3620055-3620074 | None:intergenic | 50.0% |
ATAGAGCCAAGAGAAGCCGG+AGG | + | chr5.1:3620406-3620425 | MS.gene024639:CDS | 55.0% | |
GAACTTCCTCCGGCTTCTCT+TGG | - | chr5.1:3620415-3620434 | None:intergenic | 55.0% | |
GGCAACACCTGGGTCTCAAA+CGG | + | chr5.1:3620320-3620339 | MS.gene024639:CDS | 55.0% | |
GTGCAGTGCAGGAGATTTGC+AGG | + | chr5.1:3620071-3620090 | MS.gene024639:CDS | 55.0% | |
! | ATAAGAAGGGCGTGCAGTGC+AGG | + | chr5.1:3620060-3620079 | MS.gene024639:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 3619649 | 3621048 | 3619649 | ID=MS.gene024639 |
chr5.1 | mRNA | 3619649 | 3621048 | 3619649 | ID=MS.gene024639.t1;Parent=MS.gene024639 |
chr5.1 | exon | 3619649 | 3620092 | 3619649 | ID=MS.gene024639.t1.exon1;Parent=MS.gene024639.t1 |
chr5.1 | CDS | 3619649 | 3620092 | 3619649 | ID=cds.MS.gene024639.t1;Parent=MS.gene024639.t1 |
chr5.1 | exon | 3620315 | 3620449 | 3620315 | ID=MS.gene024639.t1.exon2;Parent=MS.gene024639.t1 |
chr5.1 | CDS | 3620315 | 3620449 | 3620315 | ID=cds.MS.gene024639.t1;Parent=MS.gene024639.t1 |
chr5.1 | exon | 3620750 | 3620884 | 3620750 | ID=MS.gene024639.t1.exon3;Parent=MS.gene024639.t1 |
chr5.1 | CDS | 3620750 | 3620884 | 3620750 | ID=cds.MS.gene024639.t1;Parent=MS.gene024639.t1 |
chr5.1 | exon | 3621007 | 3621048 | 3621007 | ID=MS.gene024639.t1.exon4;Parent=MS.gene024639.t1 |
chr5.1 | CDS | 3621007 | 3621048 | 3621007 | ID=cds.MS.gene024639.t1;Parent=MS.gene024639.t1 |
Gene Sequence |
Protein sequence |