AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024736

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024736.t1 MTR_1g008290 62.857 140 43 2 94 227 8 144 1.01e-56 186
MS.gene024736.t1 MTR_5g032260 56.075 107 41 1 68 168 299 405 2.06e-30 123
MS.gene024736.t1 MTR_2g098880 32.231 121 76 1 40 154 60 180 9.34e-17 80.5
MS.gene024736.t1 MTR_2g098880 32.231 121 76 1 40 154 72 192 1.10e-16 80.5
MS.gene024736.t1 MTR_1g070355 25.726 241 153 7 14 236 48 280 6.42e-16 80.9
MS.gene024736.t1 MTR_5g076070 29.101 189 105 8 25 190 33 215 7.44e-15 75.5
MS.gene024736.t1 MTR_1g013060 28.696 230 145 7 20 231 1 229 9.44e-15 73.9
MS.gene024736.t1 MTR_0402s0040 26.882 186 121 4 41 213 26 209 1.93e-14 76.3
MS.gene024736.t1 MTR_7g446520 25.847 236 144 6 15 235 58 277 2.03e-12 68.9
MS.gene024736.t1 MTR_4g067290 33.333 108 67 2 33 136 48 154 3.32e-12 66.6
MS.gene024736.t1 MTR_4g067290 30.370 135 85 3 33 163 68 197 3.56e-12 67.0
MS.gene024736.t1 MTR_4g067290 33.333 108 67 2 33 136 48 154 3.71e-12 66.6
MS.gene024736.t1 MTR_4g067290 30.370 135 85 3 33 163 66 195 3.95e-12 67.0
MS.gene024736.t1 MTR_4g067290 33.333 108 67 2 33 136 68 174 4.09e-12 67.0
MS.gene024736.t1 MTR_4g067290 33.333 108 67 2 33 136 108 214 6.38e-12 67.0
MS.gene024736.t1 MTR_6g051425 20.561 214 145 4 43 236 19 227 1.36e-11 66.2
MS.gene024736.t1 MTR_3g006370 31.132 106 68 1 36 136 45 150 4.37e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024736.t1 AT4G15090 40.984 244 126 4 232 472 474 702 2.48e-51 187
MS.gene024736.t1 AT4G15090 41.339 254 125 5 3 236 8 257 5.06e-50 184
MS.gene024736.t1 AT4G15090 40.984 244 126 4 232 472 474 702 2.48e-51 187
MS.gene024736.t1 AT4G15090 41.339 254 125 5 3 236 8 257 5.06e-50 184
MS.gene024736.t1 AT4G15090 40.984 244 126 4 232 472 474 702 2.48e-51 187
MS.gene024736.t1 AT4G15090 41.339 254 125 5 3 236 8 257 5.06e-50 184
MS.gene024736.t1 AT4G15090 40.984 244 126 4 232 472 474 702 2.48e-51 187
MS.gene024736.t1 AT4G15090 41.339 254 125 5 3 236 8 257 5.06e-50 184
MS.gene024736.t1 AT4G15090 40.984 244 126 4 232 472 474 702 2.48e-51 187
MS.gene024736.t1 AT4G15090 41.339 254 125 5 3 236 8 257 5.06e-50 184
MS.gene024736.t1 AT1G76320 45.500 200 105 3 228 426 407 603 7.07e-51 184
MS.gene024736.t1 AT1G76320 41.709 199 104 3 45 236 1 194 3.60e-41 157
MS.gene024736.t1 AT1G76320 43.842 203 111 2 228 430 407 606 7.96e-51 185
MS.gene024736.t1 AT1G76320 41.709 199 104 3 45 236 1 194 3.80e-41 157
MS.gene024736.t1 AT1G76320 43.842 203 111 2 228 430 407 606 7.96e-51 185
MS.gene024736.t1 AT1G76320 41.709 199 104 3 45 236 1 194 3.80e-41 157
MS.gene024736.t1 AT1G76320 43.842 203 111 2 228 430 407 606 9.79e-51 185
MS.gene024736.t1 AT1G76320 41.709 199 104 3 45 236 1 194 4.46e-41 157
MS.gene024736.t1 AT3G22170 45.833 192 102 1 237 428 488 677 1.70e-50 185
MS.gene024736.t1 AT3G22170 40.187 214 95 3 40 236 69 266 1.88e-43 165
MS.gene024736.t1 AT3G22170 45.833 192 102 1 237 428 488 677 1.70e-50 185
MS.gene024736.t1 AT3G22170 40.187 214 95 3 40 236 69 266 1.88e-43 165
MS.gene024736.t1 AT2G32250 37.811 201 116 2 238 434 424 619 3.22e-34 137
MS.gene024736.t1 AT2G32250 42.051 195 77 5 44 236 41 201 4.90e-29 122
MS.gene024736.t1 AT2G32250 37.811 201 116 2 238 434 424 619 3.22e-34 137
MS.gene024736.t1 AT2G32250 42.051 195 77 5 44 236 41 201 4.90e-29 122
MS.gene024736.t1 AT2G32250 37.811 201 116 2 238 434 424 619 3.36e-34 137
MS.gene024736.t1 AT2G32250 42.051 195 77 5 44 236 41 201 4.69e-29 122
MS.gene024736.t1 AT2G32250 37.811 201 116 2 238 434 424 619 3.36e-34 137
MS.gene024736.t1 AT2G32250 42.051 195 77 5 44 236 41 201 4.69e-29 122
MS.gene024736.t1 AT2G32250 37.811 201 116 2 238 434 424 619 3.36e-34 137
MS.gene024736.t1 AT2G32250 42.051 195 77 5 44 236 41 201 4.69e-29 122
MS.gene024736.t1 AT2G32250 37.811 201 116 2 238 434 424 619 3.38e-34 137
MS.gene024736.t1 AT2G32250 42.051 195 77 5 44 236 41 201 3.64e-29 122
MS.gene024736.t1 AT2G32250 37.811 201 116 2 238 434 383 578 3.59e-34 137
MS.gene024736.t1 AT2G32250 41.753 194 77 5 45 236 1 160 2.86e-28 119
MS.gene024736.t1 AT2G32250 37.811 201 116 2 238 434 383 578 3.93e-34 137
MS.gene024736.t1 AT2G32250 41.753 194 77 5 45 236 1 160 3.03e-28 119
MS.gene024736.t1 AT4G19990 43.258 178 93 4 249 421 382 556 4.57e-33 134
MS.gene024736.t1 AT4G19990 28.333 180 75 5 78 236 1 147 4.73e-11 65.9
MS.gene024736.t1 AT4G19990 43.258 178 93 4 249 421 439 613 5.21e-33 134
MS.gene024736.t1 AT4G19990 33.028 218 92 5 40 236 20 204 2.28e-23 104
MS.gene024736.t1 AT4G19990 43.258 178 93 4 249 421 439 613 5.21e-33 134
MS.gene024736.t1 AT4G19990 33.028 218 92 5 40 236 20 204 2.28e-23 104
MS.gene024736.t1 AT4G19990 43.258 178 93 4 249 421 439 613 5.61e-33 134
MS.gene024736.t1 AT4G19990 33.028 218 92 5 40 236 20 204 2.54e-23 104
MS.gene024736.t1 AT4G19990 43.258 178 93 4 249 421 439 613 5.61e-33 134
MS.gene024736.t1 AT4G19990 33.028 218 92 5 40 236 20 204 2.54e-23 104
MS.gene024736.t1 AT4G19990 43.258 178 93 4 249 421 439 613 5.64e-33 134
MS.gene024736.t1 AT4G19990 33.028 218 92 5 40 236 20 204 2.58e-23 104
MS.gene024736.t1 AT4G19990 43.258 178 93 4 249 421 453 627 6.64e-33 133
MS.gene024736.t1 AT4G19990 33.028 218 92 5 40 236 34 218 2.36e-23 104
MS.gene024736.t1 AT2G27110 33.475 236 136 6 203 429 274 497 1.24e-31 129
MS.gene024736.t1 AT2G27110 32.618 233 142 4 203 429 419 642 1.30e-31 130
MS.gene024736.t1 AT2G27110 26.923 208 120 6 37 236 45 228 2.76e-13 73.2
MS.gene024736.t1 AT2G27110 32.618 233 142 4 203 429 419 642 1.30e-31 130
MS.gene024736.t1 AT2G27110 26.923 208 120 6 37 236 45 228 2.76e-13 73.2
MS.gene024736.t1 AT4G38180 24.263 441 278 10 37 434 273 700 5.84e-27 115
MS.gene024736.t1 AT4G38180 32.701 211 127 3 40 236 72 281 3.11e-26 113
MS.gene024736.t1 AT4G38170 35.263 190 114 5 240 423 271 457 1.08e-25 110
MS.gene024736.t1 AT1G52520 32.222 180 112 3 256 425 519 698 1.13e-21 99.4
MS.gene024736.t1 AT1G52520 28.163 245 163 4 2 236 38 279 2.60e-20 95.1
MS.gene024736.t1 AT1G80010 32.768 177 108 4 254 423 542 714 1.62e-20 95.9
MS.gene024736.t1 AT1G80010 31.604 212 126 5 41 236 95 303 3.36e-19 91.7
MS.gene024736.t1 AT3G06250 31.892 185 110 3 246 421 582 759 4.32e-18 88.2
MS.gene024736.t1 AT3G06250 27.706 231 122 6 18 232 152 353 8.92e-15 77.8
MS.gene024736.t1 AT3G06250 31.892 185 110 3 246 421 582 759 4.32e-18 88.2
MS.gene024736.t1 AT3G06250 27.706 231 122 6 18 232 152 353 8.92e-15 77.8
MS.gene024736.t1 AT3G06250 31.892 185 110 3 246 421 582 759 4.32e-18 88.2
MS.gene024736.t1 AT3G06250 27.706 231 122 6 18 232 152 353 8.92e-15 77.8
MS.gene024736.t1 AT5G18960 30.270 185 113 3 246 421 606 783 3.51e-16 82.0
MS.gene024736.t1 AT5G18960 27.962 211 120 5 22 229 192 373 5.95e-14 75.1
MS.gene024736.t1 AT5G18960 30.270 185 113 3 246 421 606 783 3.51e-16 82.0
MS.gene024736.t1 AT5G18960 27.962 211 120 5 22 229 192 373 5.95e-14 75.1
MS.gene024736.t1 AT3G59470 30.435 138 91 3 5 137 32 169 2.55e-12 67.4
MS.gene024736.t1 AT3G59470 30.435 138 91 3 5 137 32 169 2.55e-12 67.4
MS.gene024736.t1 AT3G59470 30.435 138 91 3 5 137 44 181 3.24e-12 67.4
MS.gene024736.t1 AT3G07500 35.036 137 83 3 17 148 8 143 3.65e-12 66.2
MS.gene024736.t1 AT1G10240 25.000 232 149 8 24 236 34 259 1.02e-11 67.8
MS.gene024736.t1 AT1G10240 25.000 232 149 8 24 236 34 259 1.02e-11 67.8
MS.gene024736.t1 AT4G12850 33.036 112 71 2 30 140 3 111 4.06e-11 61.6
MS.gene024736.t1 AT2G43280 30.392 102 66 1 40 136 21 122 4.39e-11 62.8
MS.gene024736.t1 AT4G12850 33.333 102 67 1 40 140 10 111 5.71e-11 62.0

Find 81 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCACTCTTTATTCTTCT+TGG 0.122394 5.3:+2704325 None:intergenic
AAAGAATTTGTGATGGAAAA+TGG 0.198140 5.3:-2706007 MS.gene024736:CDS
AACGCCGATCTTTATCTAAA+TGG 0.218779 5.3:+2705790 None:intergenic
GAAATTTCAAGTTGAAGTTT+TGG 0.239158 5.3:-2704869 MS.gene024736:CDS
TTCATATCCTCCATATTCTT+TGG 0.259642 5.3:+2705845 None:intergenic
TATGCTAAGTCAGTTGGATT+TGG 0.280799 5.3:-2706182 MS.gene024736:CDS
TCAAATTCCATTCCAATGTT+AGG 0.289388 5.3:+2706239 None:intergenic
TTCATGTACCGTTGATTTAG+AGG 0.293148 5.3:-2706279 MS.gene024736:CDS
CGGCGTTTGGCTTTAGAATC+AGG 0.298007 5.3:-2705774 MS.gene024736:CDS
GCCACAATGGCCAAAGAATA+TGG 0.298617 5.3:-2705855 MS.gene024736:CDS
GAGCTTTATTGATTCCTCTA+TGG 0.299611 5.3:+2705934 None:intergenic
ATAATGTGTCATACCATTCT+TGG 0.328571 5.3:+2704096 None:intergenic
ATGCTAAGTCAGTTGGATTT+GGG 0.354359 5.3:-2706181 MS.gene024736:CDS
AGGTATTTACTGCTTCTCTT+TGG 0.367389 5.3:+2704154 None:intergenic
GGCACAAGCAACCTGTTCTT+AGG 0.392197 5.3:-2704948 MS.gene024736:CDS
AGAAGATGTGTGTTCTAGTA+AGG 0.397808 5.3:-2704566 MS.gene024736:CDS
GCTATTGAATTTCTCGAAGA+AGG 0.413131 5.3:-2704517 MS.gene024736:CDS
CCTAAAAGAGCAAATACAAA+AGG 0.426549 5.3:-2704352 MS.gene024736:CDS
ATGCTTGCTTCTAACATCCT+TGG 0.437672 5.3:+2704609 None:intergenic
ATTGACATTTGCTTCTCAAA+AGG 0.437914 5.3:+2704916 None:intergenic
TTTAGATAAAGATCGGCGTT+TGG 0.438381 5.3:-2705787 MS.gene024736:CDS
GAATTAATGGAAGTTGTTGA+TGG 0.438521 5.3:-2706365 None:intergenic
ATATGATTCTTTATATCAAA+AGG 0.443423 5.3:-2704539 MS.gene024736:CDS
TCTTTGTAGACATTCATTGA+TGG 0.446762 5.3:-2704689 MS.gene024736:CDS
ATATGAAAACATTGGTTGCT+TGG 0.449564 5.3:-2705829 MS.gene024736:CDS
TTCACCATTGAGAACATTTG+AGG 0.450893 5.3:+2704134 None:intergenic
GAACATTCTATTGATGAGAA+TGG 0.451168 5.3:-2706335 MS.gene024736:CDS
GAAAATAATGTGCATTGGAA+TGG 0.458553 5.3:+2705961 None:intergenic
ATGGAAGTTGTTGATGGGAC+TGG 0.470131 5.3:-2706359 MS.gene024736:CDS
TCCATATTCTTTGGCCATTG+TGG 0.472191 5.3:+2705854 None:intergenic
AGGAAAGTCATCAGGGTTGA+AGG 0.473626 5.3:-2703996 None:intergenic
TCAATTGCATAAAAGAATCC+TGG 0.481905 5.3:+2705702 None:intergenic
AACAGCTGCATTGCCAAGAA+TGG 0.484562 5.3:-2704109 MS.gene024736:intron
AACAATGTGCAACTATCAAC+CGG 0.485541 5.3:-2704438 MS.gene024736:CDS
TTCTTAAAATATAGTGTGAT+GGG 0.486629 5.3:+2704638 None:intergenic
AAAGTCGAAAATTGTAAAAG+TGG 0.487862 5.3:+2704798 None:intergenic
GGTGATGGAGTCCTAAGAAC+AGG 0.491171 5.3:+2704937 None:intergenic
CTAAAAGAGCAAATACAAAA+GGG 0.494734 5.3:-2704351 MS.gene024736:CDS
CGTGTTAAAAGAATTTGTGA+TGG 0.498075 5.3:-2706014 MS.gene024736:CDS
ACTCATTATGCTAAGTCAGT+TGG 0.500199 5.3:-2706188 MS.gene024736:CDS
AGGAGATGCAAATGCAATGT+TGG 0.501317 5.3:-2705754 MS.gene024736:CDS
GCAAGGAAAATAATGTGCAT+TGG 0.508445 5.3:+2705956 None:intergenic
AATACCTCAAATGTTCTCAA+TGG 0.509038 5.3:-2704138 MS.gene024736:CDS
AGTTATGCTTGCACAAGATA+CGG 0.514711 5.3:-2706104 MS.gene024736:CDS
TCAAAGTTTCTTCAAGTGCA+TGG 0.515683 5.3:+2704461 None:intergenic
AAATCCACGTCCTTGTTTGA+AGG 0.523815 5.3:-2706057 MS.gene024736:CDS
TTGATGGCATTCCAAGCTGT+TGG 0.525056 5.3:-2704673 MS.gene024736:CDS
CTTCTTAAAATATAGTGTGA+TGG 0.527660 5.3:+2704637 None:intergenic
ATTGAAACTTTGCACCATGT+TGG 0.528985 5.3:-2705900 MS.gene024736:CDS
GAATGGAGAGCAAGTTGTCA+AGG 0.537788 5.3:-2706318 MS.gene024736:CDS
ATTTGCTTCTCAAAAGGTGA+TGG 0.540522 5.3:+2704922 None:intergenic
TCCACGTCCTTGTTTGAAGG+TGG 0.544839 5.3:-2706054 MS.gene024736:CDS
GAAACCATTTAGATAAAGAT+CGG 0.550718 5.3:-2705794 MS.gene024736:CDS
TTATTGATTCCTCTATGGCA+AGG 0.554774 5.3:+2705939 None:intergenic
AATTAATGGAAGTTGTTGAT+GGG 0.556246 5.3:-2706364 None:intergenic
TATGGAGGATATGAAAACAT+TGG 0.557417 5.3:-2705837 MS.gene024736:CDS
CAACACAGACACCAACAGCT+TGG 0.558938 5.3:+2704662 None:intergenic
CCACGTCCTTGTTTGAAGGT+GGG 0.564321 5.3:-2706053 MS.gene024736:CDS
AGGATAGAGAAGAGGCGGAA+AGG 0.566665 5.3:-2704990 MS.gene024736:CDS
TCAAGAACCTAACATTGGAA+TGG 0.572602 5.3:-2706246 MS.gene024736:CDS
AGAGTGTGATGTCTCGAAGA+AGG 0.573703 5.3:-2704752 MS.gene024736:CDS
TGCTTTACAGGATAGAGAAG+AGG 0.576377 5.3:-2704998 MS.gene024736:intron
TGCTTGTTCTCACTCCAACA+TGG 0.579133 5.3:+2705886 None:intergenic
TGCAATTGATATGGATGATG+AGG 0.581691 5.3:-2705688 MS.gene024736:CDS
TTGTTTGAAGGTGGGATGTG+AGG 0.585943 5.3:-2706045 MS.gene024736:CDS
CCCACCTTCAAACAAGGACG+TGG 0.589716 5.3:+2706053 None:intergenic
TCACATCCCACCTTCAAACA+AGG 0.596792 5.3:+2706047 None:intergenic
ATAAAGAGTGGGATCGAGAG+AGG 0.602973 5.3:-2704316 MS.gene024736:CDS
GGTGGTCAAGAACCTAACAT+TGG 0.606305 5.3:-2706251 MS.gene024736:CDS
ACCGTTAGCCTCTAAATCAA+CGG 0.614838 5.3:+2706271 None:intergenic
TTAGAAGCAAGCATCATACA+AGG 0.616240 5.3:-2704600 MS.gene024736:CDS
AAAATCGACAAGGAAAACGT+TGG 0.622612 5.3:-2704409 MS.gene024736:CDS
TAAAAGAGCAAATACAAAAG+GGG 0.623948 5.3:-2704350 MS.gene024736:CDS
ACCGTTGATTTAGAGGCTAA+CGG 0.628314 5.3:-2706272 MS.gene024736:CDS
CTCCAAGAAGAATAAAGAGT+GGG 0.644223 5.3:-2704327 MS.gene024736:CDS
CCGGTCTTTGAAAATCGACA+AGG 0.646121 5.3:-2704419 MS.gene024736:CDS
TTTACAGGATAGAGAAGAGG+CGG 0.651231 5.3:-2704995 MS.gene024736:intron
GCAATTGATATGGATGATGA+GGG 0.673224 5.3:-2705687 MS.gene024736:CDS
GCTCCAAGAAGAATAAAGAG+TGG 0.689620 5.3:-2704328 MS.gene024736:CDS
ACAATGGCCAAAGAATATGG+AGG 0.745699 5.3:-2705852 MS.gene024736:CDS
GTTGATTTAGAGGCTAACGG+TGG 0.762259 5.3:-2706269 MS.gene024736:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGATTCTTTATATCAAA+AGG - chr5.3:2705819-2705838 MS.gene024736:CDS 15.0%
!! AACAACAATTTGAAGATAAA+TGG - chr5.3:2705128-2705147 MS.gene024736:intron 20.0%
!! ATCTAGTTGTAAAGTAAAAA+AGG - chr5.3:2706077-2706096 MS.gene024736:CDS 20.0%
!! ATGTAAGAAAACTACATTAA+AGG - chr5.3:2705315-2705334 MS.gene024736:intron 20.0%
!! TTCTTAAAATATAGTGTGAT+GGG + chr5.3:2705723-2705742 None:intergenic 20.0%
!!! AAAATATAAAGTTGCTTTAC+AGG - chr5.3:2705348-2705367 MS.gene024736:intron 20.0%
!!! AAATTTCAAGTTGAAGTTTT+GGG - chr5.3:2705490-2705509 MS.gene024736:intron 20.0%
!!! ATTCTTTTATGCAATTGATA+TGG - chr5.3:2704661-2704680 MS.gene024736:CDS 20.0%
!!! TACATGAATGATACATTTTT+TGG - chr5.3:2705235-2705254 MS.gene024736:intron 20.0%
!!! TTTTGTTTTCTTATTTTCAC+AGG - chr5.3:2706342-2706361 MS.gene024736:CDS 20.0%
! AAAGTCGAAAATTGTAAAAG+TGG + chr5.3:2705563-2705582 None:intergenic 25.0%
! AATGTATCATTCATGTAAAC+AGG + chr5.3:2705232-2705251 None:intergenic 25.0%
! ACATATGCATATATAAGTCT+TGG - chr5.3:2705101-2705120 MS.gene024736:intron 25.0%
! CTAAAAGAGCAAATACAAAA+GGG - chr5.3:2706007-2706026 MS.gene024736:CDS 25.0%
! CTTCTTAAAATATAGTGTGA+TGG + chr5.3:2705724-2705743 None:intergenic 25.0%
! GAAACCATTTAGATAAAGAT+CGG - chr5.3:2704564-2704583 MS.gene024736:CDS 25.0%
! GTGGAAAAATTTGATCTATT+TGG - chr5.3:2705160-2705179 MS.gene024736:intron 25.0%
! TAAAAGAGCAAATACAAAAG+GGG - chr5.3:2706008-2706027 MS.gene024736:CDS 25.0%
! TAAACAATCACTTTCAATCA+AGG - chr5.3:2704825-2704844 MS.gene024736:CDS 25.0%
! TGATTGTTTACACCAATAAA+AGG + chr5.3:2704815-2704834 None:intergenic 25.0%
!! AAAGAATTTGTGATGGAAAA+TGG - chr5.3:2704351-2704370 MS.gene024736:CDS 25.0%
!! TCGCATGAAAAATGTATTTT+GGG - chr5.3:2704694-2704713 MS.gene024736:CDS 25.0%
!!! AAGTTTTGAGAGTTACAATT+TGG - chr5.3:2705870-2705889 MS.gene024736:CDS 25.0%
!!! ATGAATGATACATTTTTTGG+TGG - chr5.3:2705238-2705257 MS.gene024736:intron 25.0%
!!! CACACTATATTTTAAGAAGA+TGG - chr5.3:2705725-2705744 MS.gene024736:CDS 25.0%
!!! GAAATTTCAAGTTGAAGTTT+TGG - chr5.3:2705489-2705508 MS.gene024736:intron 25.0%
!!! TCATATGGTTGATGAAAATA+TGG - chr5.3:2704891-2704910 MS.gene024736:CDS 25.0%
AAAATATGGCTTAGAGCAAT+GGG - chr5.3:2704905-2704924 MS.gene024736:CDS 30.0%
AATACCTCAAATGTTCTCAA+TGG - chr5.3:2706220-2706239 MS.gene024736:CDS 30.0%
AATGAAAGAGGCTATTAAAG+AGG - chr5.3:2704970-2704989 MS.gene024736:CDS 30.0%
ATAATGTGTCATACCATTCT+TGG + chr5.3:2706265-2706284 None:intergenic 30.0%
ATATGAAGAACGTGAACATT+GGG - chr5.3:2705204-2705223 MS.gene024736:intron 30.0%
ATTGACATTTGCTTCTCAAA+AGG + chr5.3:2705445-2705464 None:intergenic 30.0%
CCTAAAAGAGCAAATACAAA+AGG - chr5.3:2706006-2706025 MS.gene024736:CDS 30.0%
CGTGTTAAAAGAATTTGTGA+TGG - chr5.3:2704344-2704363 MS.gene024736:CDS 30.0%
GAAAATAATGTGCATTGGAA+TGG + chr5.3:2704400-2704419 None:intergenic 30.0%
GAACATTCTATTGATGAGAA+TGG - chr5.3:2704023-2704042 MS.gene024736:intron 30.0%
TATATGAAGAACGTGAACAT+TGG - chr5.3:2705203-2705222 MS.gene024736:intron 30.0%
TATGGAGGATATGAAAACAT+TGG - chr5.3:2704521-2704540 MS.gene024736:CDS 30.0%
TCAAATTCCATTCCAATGTT+AGG + chr5.3:2704122-2704141 None:intergenic 30.0%
TCAATTGCATAAAAGAATCC+TGG + chr5.3:2704659-2704678 None:intergenic 30.0%
TCTTTGGCATATACTTAGAA+AGG - chr5.3:2705021-2705040 MS.gene024736:intron 30.0%
TCTTTGTAGACATTCATTGA+TGG - chr5.3:2705669-2705688 MS.gene024736:intron 30.0%
TGAAGATAAATGGCATGAAA+TGG - chr5.3:2705138-2705157 MS.gene024736:intron 30.0%
TGATCAGTTATGATTGCATT+TGG + chr5.3:2704941-2704960 None:intergenic 30.0%
TGGTATGACACATTATTCTT+AGG - chr5.3:2706269-2706288 MS.gene024736:CDS 30.0%
TTCATATCCTCCATATTCTT+TGG + chr5.3:2704516-2704535 None:intergenic 30.0%
TTGATCTATTTGGAGATGAT+TGG - chr5.3:2705170-2705189 MS.gene024736:intron 30.0%
! ATATGAAAACATTGGTTGCT+TGG - chr5.3:2704529-2704548 MS.gene024736:CDS 30.0%
! CCTTTTGTATTTGCTCTTTT+AGG + chr5.3:2706009-2706028 None:intergenic 30.0%
! GTCGCATGAAAAATGTATTT+TGG - chr5.3:2704693-2704712 MS.gene024736:CDS 30.0%
!! CATGAAAAATGTATTTTGGG+TGG - chr5.3:2704697-2704716 MS.gene024736:CDS 30.0%
!! TATTTTAAGAAGATGGACCA+AGG - chr5.3:2705732-2705751 MS.gene024736:CDS 30.0%
!!! AAGCAAATTTTTTGCCACAA+TGG - chr5.3:2704490-2704509 MS.gene024736:CDS 30.0%
!!! GTCGCTTTTTTGAGTATAAT+GGG - chr5.3:2705644-2705663 MS.gene024736:intron 30.0%
!!! TGTCGCTTTTTTGAGTATAA+TGG - chr5.3:2705643-2705662 MS.gene024736:intron 30.0%
AAAACATGACTAAGCTTCTC+AGG + chr5.3:2705049-2705068 None:intergenic 35.0%
AAAATCGACAAGGAAAACGT+TGG - chr5.3:2705949-2705968 MS.gene024736:CDS 35.0%
AACAATGTGCAACTATCAAC+CGG - chr5.3:2705920-2705939 MS.gene024736:CDS 35.0%
AACGCCGATCTTTATCTAAA+TGG + chr5.3:2704571-2704590 None:intergenic 35.0%
ACACCAATAAAAGGAGCAAA+TGG + chr5.3:2704806-2704825 None:intergenic 35.0%
ACTCATTATGCTAAGTCAGT+TGG - chr5.3:2704170-2704189 MS.gene024736:intron 35.0%
AGAAGATGTGTGTTCTAGTA+AGG - chr5.3:2705792-2705811 MS.gene024736:CDS 35.0%
AGACCAAGAACACTTTCATA+TGG - chr5.3:2704876-2704895 MS.gene024736:CDS 35.0%
AGATAAATGGCATGAAATGG+TGG - chr5.3:2705141-2705160 MS.gene024736:intron 35.0%
AGGTATTTACTGCTTCTCTT+TGG + chr5.3:2706207-2706226 None:intergenic 35.0%
AGTTATGCTTGCACAAGATA+CGG - chr5.3:2704254-2704273 MS.gene024736:intron 35.0%
ATCCCACTCTTTATTCTTCT+TGG + chr5.3:2706036-2706055 None:intergenic 35.0%
ATGCTAAGTCAGTTGGATTT+GGG - chr5.3:2704177-2704196 MS.gene024736:intron 35.0%
ATTGAAACTTTGCACCATGT+TGG - chr5.3:2704458-2704477 MS.gene024736:CDS 35.0%
ATTTGCTTCTCAAAAGGTGA+TGG + chr5.3:2705439-2705458 None:intergenic 35.0%
CAAAATCGATGTCGAGAATT+TGG + chr5.3:2705001-2705020 None:intergenic 35.0%
CACTTTCAATCAAGGTTACT+TGG - chr5.3:2704833-2704852 MS.gene024736:CDS 35.0%
CTCATGCAAGAAAAAAATCC+AGG - chr5.3:2704638-2704657 MS.gene024736:CDS 35.0%
CTCCAAGAAGAATAAAGAGT+GGG - chr5.3:2706031-2706050 MS.gene024736:CDS 35.0%
GAAAATATGGCTTAGAGCAA+TGG - chr5.3:2704904-2704923 MS.gene024736:CDS 35.0%
GCAAGGAAAATAATGTGCAT+TGG + chr5.3:2704405-2704424 None:intergenic 35.0%
GCAATTGATATGGATGATGA+GGG - chr5.3:2704671-2704690 MS.gene024736:CDS 35.0%
GCTATTGAATTTCTCGAAGA+AGG - chr5.3:2705841-2705860 MS.gene024736:CDS 35.0%
TATGCTAAGTCAGTTGGATT+TGG - chr5.3:2704176-2704195 MS.gene024736:intron 35.0%
TCAAAGTTTCTTCAAGTGCA+TGG + chr5.3:2705900-2705919 None:intergenic 35.0%
TCAAGAACCTAACATTGGAA+TGG - chr5.3:2704112-2704131 MS.gene024736:CDS 35.0%
TCAAGATAGAGCAATGAAAG+AGG - chr5.3:2704958-2704977 MS.gene024736:CDS 35.0%
TGCAATTGATATGGATGATG+AGG - chr5.3:2704670-2704689 MS.gene024736:CDS 35.0%
TTAGAAGCAAGCATCATACA+AGG - chr5.3:2705758-2705777 MS.gene024736:CDS 35.0%
TTCACCATTGAGAACATTTG+AGG + chr5.3:2706227-2706246 None:intergenic 35.0%
TTTAGATAAAGATCGGCGTT+TGG - chr5.3:2704571-2704590 MS.gene024736:CDS 35.0%
! ATTTTCACAGGAAAGTCATC+AGG - chr5.3:2706354-2706373 MS.gene024736:CDS 35.0%
! CATTATTTTCCTTGCCATAG+AGG - chr5.3:2704410-2704429 MS.gene024736:CDS 35.0%
! TTTTCACAGGAAAGTCATCA+GGG - chr5.3:2706355-2706374 MS.gene024736:CDS 35.0%
!! ATGCCATTTGCTCCTTTTAT+TGG - chr5.3:2704800-2704819 MS.gene024736:CDS 35.0%
!! CAACCATATGAAAGTGTTCT+TGG + chr5.3:2704882-2704901 None:intergenic 35.0%
!! GAGCTTTATTGATTCCTCTA+TGG + chr5.3:2704427-2704446 None:intergenic 35.0%
!! TTATTGATTCCTCTATGGCA+AGG + chr5.3:2704422-2704441 None:intergenic 35.0%
!! TTCATGTACCGTTGATTTAG+AGG - chr5.3:2704079-2704098 MS.gene024736:intron 35.0%
!!! GTTGAAGTTTTGGGATTATC+TGG - chr5.3:2705499-2705518 MS.gene024736:intron 35.0%
ACAATGGCCAAAGAATATGG+AGG - chr5.3:2704506-2704525 MS.gene024736:CDS 40.0%
AGGAGATGCAAATGCAATGT+TGG - chr5.3:2704604-2704623 MS.gene024736:CDS 40.0%
ATGCTTGCTTCTAACATCCT+TGG + chr5.3:2705752-2705771 None:intergenic 40.0%
GCTCCAAGAAGAATAAAGAG+TGG - chr5.3:2706030-2706049 MS.gene024736:CDS 40.0%
TCCATATTCTTTGGCCATTG+TGG + chr5.3:2704507-2704526 None:intergenic 40.0%
TGCTTTACAGGATAGAGAAG+AGG - chr5.3:2705360-2705379 MS.gene024736:intron 40.0%
TTTACAGGATAGAGAAGAGG+CGG - chr5.3:2705363-2705382 MS.gene024736:intron 40.0%
! AAATCCACGTCCTTGTTTGA+AGG - chr5.3:2704301-2704320 MS.gene024736:CDS 40.0%
! ACCGTTAGCCTCTAAATCAA+CGG + chr5.3:2704090-2704109 None:intergenic 40.0%
!! ACCGTTGATTTAGAGGCTAA+CGG - chr5.3:2704086-2704105 MS.gene024736:intron 40.0%
!! GTATTTTGGGTGGATGCAAA+AGG - chr5.3:2704707-2704726 MS.gene024736:CDS 40.0%
!!! CCTTGTCGATTTTCAAAGAC+CGG + chr5.3:2705942-2705961 None:intergenic 40.0%
!!! CTCGACATCGATTTTGTCTT+TGG - chr5.3:2705005-2705024 MS.gene024736:intron 40.0%
!!! GGCAAGCTGATTTTAAGACA+TGG - chr5.3:2705389-2705408 MS.gene024736:intron 40.0%
AACAGCTGCATTGCCAAGAA+TGG - chr5.3:2706249-2706268 MS.gene024736:CDS 45.0%
AGAGTGTGATGTCTCGAAGA+AGG - chr5.3:2705606-2705625 MS.gene024736:intron 45.0%
ATAAAGAGTGGGATCGAGAG+AGG - chr5.3:2706042-2706061 MS.gene024736:CDS 45.0%
ATATGGCTTAGAGCAATGGG+TGG - chr5.3:2704908-2704927 MS.gene024736:CDS 45.0%
GAATGGAGAGCAAGTTGTCA+AGG - chr5.3:2704040-2704059 MS.gene024736:intron 45.0%
GCCACAATGGCCAAAGAATA+TGG - chr5.3:2704503-2704522 MS.gene024736:CDS 45.0%
GGTGGTCAAGAACCTAACAT+TGG - chr5.3:2704107-2704126 MS.gene024736:intron 45.0%
TCACATCCCACCTTCAAACA+AGG + chr5.3:2704314-2704333 None:intergenic 45.0%
TGCTTGTTCTCACTCCAACA+TGG + chr5.3:2704475-2704494 None:intergenic 45.0%
TTGTTTGAAGGTGGGATGTG+AGG - chr5.3:2704313-2704332 MS.gene024736:CDS 45.0%
! AGGACGTGGATTTTGTGAAC+TGG + chr5.3:2704294-2704313 None:intergenic 45.0%
! ATGGAAGTTGTTGATGGGAC+TGG - chr5.3:2703999-2704018 MS.gene024736:intron 45.0%
! CCGGTCTTTGAAAATCGACA+AGG - chr5.3:2705939-2705958 MS.gene024736:CDS 45.0%
! GTTGATTTAGAGGCTAACGG+TGG - chr5.3:2704089-2704108 MS.gene024736:intron 45.0%
! TTGATGGCATTCCAAGCTGT+TGG - chr5.3:2705685-2705704 MS.gene024736:CDS 45.0%
AGGATAGAGAAGAGGCGGAA+AGG - chr5.3:2705368-2705387 MS.gene024736:intron 50.0%
CAACACAGACACCAACAGCT+TGG + chr5.3:2705699-2705718 None:intergenic 50.0%
GGCACAAGCAACCTGTTCTT+AGG - chr5.3:2705410-2705429 MS.gene024736:intron 50.0%
! CCACGTCCTTGTTTGAAGGT+GGG - chr5.3:2704305-2704324 MS.gene024736:CDS 50.0%
! TCCACGTCCTTGTTTGAAGG+TGG - chr5.3:2704304-2704323 MS.gene024736:CDS 50.0%
!! CGGCGTTTGGCTTTAGAATC+AGG - chr5.3:2704584-2704603 MS.gene024736:CDS 50.0%
!! GGTGATGGAGTCCTAAGAAC+AGG + chr5.3:2705424-2705443 None:intergenic 50.0%
CCCACCTTCAAACAAGGACG+TGG + chr5.3:2704308-2704327 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 2703999 2706381 2703999 ID=MS.gene024736
chr5.3 mRNA 2703999 2706381 2703999 ID=MS.gene024736.t1;Parent=MS.gene024736
chr5.3 exon 2705674 2706381 2705674 ID=MS.gene024736.t1.exon1;Parent=MS.gene024736.t1
chr5.3 CDS 2705674 2706381 2705674 ID=cds.MS.gene024736.t1;Parent=MS.gene024736.t1
chr5.3 exon 2704282 2705010 2704282 ID=MS.gene024736.t1.exon2;Parent=MS.gene024736.t1
chr5.3 CDS 2704282 2705010 2704282 ID=cds.MS.gene024736.t1;Parent=MS.gene024736.t1
chr5.3 exon 2704110 2704187 2704110 ID=MS.gene024736.t1.exon3;Parent=MS.gene024736.t1
chr5.3 CDS 2704110 2704187 2704110 ID=cds.MS.gene024736.t1;Parent=MS.gene024736.t1
chr5.3 exon 2703999 2704016 2703999 ID=MS.gene024736.t1.exon4;Parent=MS.gene024736.t1
chr5.3 CDS 2703999 2704016 2703999 ID=cds.MS.gene024736.t1;Parent=MS.gene024736.t1
Gene Sequence

>MS.gene024736

ATGGAAGTTGTTGATGGGACTGGAGAACATTCTATTGATGAGAATGGAGAGCAAGTTGTCAAGGAGATTGATGACAATGATTCATGTACCGTTGATTTAGAGGCTAACGGTGGTCAAGAACCTAACATTGGAATGGAATTTGATTCACAAGAAAATGCTTATTCATTCTACACTCATTATGCTAAGTCAGTTGGATTTGGGATATCAATTAAAAATAGTCGTCGTTCAAAGATTTCTAGAGAGTTTATTGATGTAAGTTATGCTTGCACAAGATACGGCAAGAAGCGAGAATCCAGTTCACAAAATCCACGTCCTTGTTTGAAGGTGGGATGTGAGGCTAGTTTACGTGTTAAAAGAATTTGTGATGGAAAATGGATTGTTCATAGCTTCATTAAATTCCATTCCAATGCACATTATTTTCCTTGCCATAGAGGAATCAATAAAGCTCAAAAGCATTCTATTGAAACTTTGCACCATGTTGGAGTGAGAACAAGCAAATTTTTTGCCACAATGGCCAAAGAATATGGAGGATATGAAAACATTGGTTGCTTGGAGAAAGATGTAAGAAACCATTTAGATAAAGATCGGCGTTTGGCTTTAGAATCAGGAGATGCAAATGCAATGTTGGATTGTTTTATACTCATGCAAGAAAAAAATCCAGGATTCTTTTATGCAATTGATATGGATGATGAGGGTCGCATGAAAAATGTATTTTGGGTGGATGCAAAAGGTAGAGAAGACTATCAAGAGTTTGAAGATGTGATTTCATTTGATACTACATATATCACAAATAAGTACAAAATGCCATTTGCTCCTTTTATTGGTGTAAACAATCACTTTCAATCAAGGTTACTTGGCTGTGCATTACTCTCAGATGAGACCAAGAACACTTTCATATGGTTGATGAAAATATGGCTTAGAGCAATGGGTGGAAAACATCCAAATGCAATCATAACTGATCAAGATAGAGCAATGAAAGAGGCTATTAAAGAGGTATTTCCAAATTCTCGACATCGATTTTGTCTTTGGCATATACTTAGAAAGGTGCCTGAGAAGCTTAGTCATGTTTTAAGAGATGACGAAGACTTCATGAGATATCTCAACATATGCATATATAAGTCTTGGTCAAAACAACAATTTGAAGATAAATGGCATGAAATGGTGGAAAAATTTGATCTATTTGGAGATGATTGGATTCACTCTTTATATGAAGAACGTGAACATTGGGTTCCTGTTTACATGAATGATACATTTTTTGGTGGCTTGTCAACAACTCAAAGATCAGAGAGCATTAACTCTTTTTTTGACAAATATGAATGTAAGAAAACTACATTAAAGGAATTTTTCGAAAAATATAAAGTTGCTTTACAGGATAGAGAAGAGGCGGAAAGGCAAGCTGATTTTAAGACATGGCACAAGCAACCTGTTCTTAGGACTCCATCACCTTTTGAGAAGCAAATGTCAATGATATATACACATGAAATCTTCAAGAAATTTCAAGTTGAAGTTTTGGGATTATCTGGATGTCGTATTGTGAAAGAACATAATGATAATCTTACTGCCACTTTTACAATTTTCGACTTTCATAAAAATGACGAGTTTATTGTAGAGTGTGATGTCTCGAAGAAGGAAATATCATGTCTGTGTCGCTTTTTTGAGTATAATGGGTATCTTTGTAGACATTCATTGATGGCATTCCAAGCTGTTGGTGTCTGTGTTGTCCCATCACACTATATTTTAAGAAGATGGACCAAGGATGTTAGAAGCAAGCATCATACAAGGATAATGAAAGAAGAAGATGTGTGTTCTAGTAAGGAGAGATATGATTCTTTATATCAAAAGGCTATTGAATTTCTCGAAGAAGGATCGCTAAGTTTTGAGAGTTACAATTTGGCTTGCCATGCACTTGAAGAAACTTTGAAACAATGTGCAACTATCAACCGGTCTTTGAAAATCGACAAGGAAAACGTTGGTCAGAGCAGTTTACGTGTGAAGCTAGTGCGTGATCCTAAAAGAGCAAATACAAAAGGGGCTCCAAGAAGAATAAAGAGTGGGATCGAGAGAGGTCGTAAGAGAACATCTAGTTGTAAAGTAAAAAAGGTTAGAAGATTTTAACTTGATCAAAATTTGTATAATGTTTTTTTTTTTATTTTAGCATTATTTCTCATTGTTATGTATTTGTTGTGATTTTAAGTCTGCTATTGTCCAAAGAGAAGCAGTAAATACCTCAAATGTTCTCAATGGTGAAGTAACAGCTGCATTGCCAAGAATGGTATGACACATTATTCTTAGGTGATTTAATATTAAGTTAGTAGATACATTTTGAGTTTTCAACTAATTGTCTTTTGTTTTCTTATTTTCACAGGAAAGTCATCAGGGTTGA
Protein sequence

>MS.gene024736.t1

MEVVDGTGEHSIDENGEQVVKEIDDNDSCTVDLEANGGQEPNIGMEFDSQENAYSFYTHYAKSVGFGISIKNSRRSKISREFIDVSYACTRYGKKRESSSQNPRPCLKVGCEASLRVKRICDGKWIVHSFIKFHSNAHYFPCHRGINKAQKHSIETLHHVGVRTSKFFATMAKEYGGYENIGCLEKDVRNHLDKDRRLALESGDANAMLDCFILMQEKNPGFFYAIDMDDEGRMKNDREEAERQADFKTWHKQPVLRTPSPFEKQMSMIYTHEIFKKFQVEVLGLSGCRIVKEHNDNLTATFTIFDFHKNDEFIVECDVSKKEISCLCRFFEYNGYLCRHSLMAFQAVGVCVVPSHYILRRWTKDVRSKHHTRIMKEEDVCSSKERYDSLYQKAIEFLEEGSLSFESYNLACHALEETLKQCATINRSLKIDKENVGQSSLRVKLVRDPKRANTKGAPRRIKSGIERGRKRTSSCKVKKSAIVQREAVNTSNVLNGEVTAALPRMESHQG