Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024779.t1 | XP_024636348.1 | 53.8 | 745 | 124 | 4 | 1 | 549 | 1 | 721 | 4.50E-203 | 717.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024779.t1 | Q5UBY2 | 23.8 | 585 | 315 | 17 | 1 | 470 | 1 | 569 | 3.4e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024779.t1 | A0A396GJD5 | 48.7 | 668 | 147 | 2 | 1 | 472 | 1 | 668 | 5.0e-164 | 587.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene024779.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024779.t1 | MTR_6g051425 | 71.515 | 165 | 43 | 1 | 1 | 161 | 1 | 165 | 5.37e-79 | 252 |
| MS.gene024779.t1 | MTR_2g039370 | 90.541 | 74 | 7 | 0 | 49 | 122 | 98 | 171 | 4.33e-38 | 142 |
| MS.gene024779.t1 | MTR_3g465760 | 72.464 | 69 | 15 | 1 | 41 | 105 | 2 | 70 | 5.82e-28 | 107 |
| MS.gene024779.t1 | MTR_2g098880 | 31.405 | 121 | 73 | 3 | 7 | 121 | 51 | 167 | 1.20e-12 | 68.6 |
| MS.gene024779.t1 | MTR_2g098880 | 31.405 | 121 | 73 | 3 | 7 | 121 | 63 | 179 | 1.56e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024779.t1 | AT4G38180 | 31.466 | 232 | 153 | 4 | 162 | 389 | 414 | 643 | 2.08e-31 | 130 |
| MS.gene024779.t1 | AT4G38180 | 36.000 | 150 | 91 | 3 | 16 | 161 | 72 | 220 | 5.87e-17 | 85.1 |
| MS.gene024779.t1 | AT4G38170 | 25.952 | 289 | 198 | 6 | 163 | 447 | 180 | 456 | 2.84e-31 | 128 |
| MS.gene024779.t1 | AT2G27110 | 31.111 | 225 | 148 | 4 | 163 | 384 | 217 | 437 | 8.94e-30 | 124 |
| MS.gene024779.t1 | AT2G27110 | 31.111 | 225 | 148 | 4 | 163 | 384 | 362 | 582 | 9.94e-30 | 125 |
| MS.gene024779.t1 | AT2G27110 | 31.111 | 225 | 148 | 4 | 163 | 384 | 362 | 582 | 9.94e-30 | 125 |
| MS.gene024779.t1 | AT1G76320 | 29.596 | 223 | 149 | 3 | 162 | 381 | 327 | 544 | 2.59e-26 | 114 |
| MS.gene024779.t1 | AT1G76320 | 29.596 | 223 | 149 | 3 | 162 | 381 | 327 | 544 | 2.75e-26 | 114 |
| MS.gene024779.t1 | AT1G76320 | 29.596 | 223 | 149 | 3 | 162 | 381 | 327 | 544 | 2.75e-26 | 114 |
| MS.gene024779.t1 | AT1G76320 | 29.596 | 223 | 149 | 3 | 162 | 381 | 327 | 544 | 2.85e-26 | 114 |
| MS.gene024779.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 167 | 381 | 344 | 559 | 3.79e-25 | 110 |
| MS.gene024779.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 167 | 381 | 344 | 559 | 3.79e-25 | 110 |
| MS.gene024779.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 167 | 381 | 287 | 502 | 4.06e-25 | 110 |
| MS.gene024779.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 167 | 381 | 358 | 573 | 4.42e-25 | 110 |
| MS.gene024779.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 167 | 381 | 344 | 559 | 4.68e-25 | 110 |
| MS.gene024779.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 167 | 381 | 344 | 559 | 5.69e-25 | 110 |
| MS.gene024779.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 167 | 381 | 344 | 559 | 5.69e-25 | 110 |
| MS.gene024779.t1 | AT3G22170 | 32.143 | 224 | 146 | 4 | 161 | 381 | 398 | 618 | 1.42e-24 | 108 |
| MS.gene024779.t1 | AT3G22170 | 32.143 | 224 | 146 | 4 | 161 | 381 | 398 | 618 | 1.42e-24 | 108 |
| MS.gene024779.t1 | AT4G15090 | 29.596 | 223 | 151 | 4 | 162 | 381 | 390 | 609 | 3.50e-24 | 107 |
| MS.gene024779.t1 | AT4G15090 | 29.596 | 223 | 151 | 4 | 162 | 381 | 390 | 609 | 3.50e-24 | 107 |
| MS.gene024779.t1 | AT4G15090 | 29.596 | 223 | 151 | 4 | 162 | 381 | 390 | 609 | 3.50e-24 | 107 |
| MS.gene024779.t1 | AT4G15090 | 29.596 | 223 | 151 | 4 | 162 | 381 | 390 | 609 | 3.50e-24 | 107 |
| MS.gene024779.t1 | AT4G15090 | 29.596 | 223 | 151 | 4 | 162 | 381 | 390 | 609 | 3.50e-24 | 107 |
| MS.gene024779.t1 | AT5G18960 | 29.787 | 235 | 137 | 5 | 161 | 382 | 510 | 729 | 1.68e-23 | 105 |
| MS.gene024779.t1 | AT5G18960 | 29.787 | 235 | 137 | 5 | 161 | 382 | 510 | 729 | 1.68e-23 | 105 |
| MS.gene024779.t1 | AT3G06250 | 29.362 | 235 | 138 | 6 | 161 | 382 | 486 | 705 | 4.14e-23 | 104 |
| MS.gene024779.t1 | AT3G06250 | 29.362 | 235 | 138 | 6 | 161 | 382 | 486 | 705 | 4.14e-23 | 104 |
| MS.gene024779.t1 | AT3G06250 | 29.362 | 235 | 138 | 6 | 161 | 382 | 486 | 705 | 4.14e-23 | 104 |
| MS.gene024779.t1 | AT2G32250 | 27.149 | 221 | 155 | 4 | 163 | 380 | 335 | 552 | 3.98e-22 | 101 |
| MS.gene024779.t1 | AT2G32250 | 27.149 | 221 | 155 | 4 | 163 | 380 | 294 | 511 | 4.14e-22 | 101 |
| MS.gene024779.t1 | AT2G32250 | 27.149 | 221 | 155 | 4 | 163 | 380 | 294 | 511 | 4.41e-22 | 101 |
| MS.gene024779.t1 | AT2G32250 | 27.149 | 221 | 155 | 4 | 163 | 380 | 335 | 552 | 4.93e-22 | 101 |
| MS.gene024779.t1 | AT2G32250 | 27.149 | 221 | 155 | 4 | 163 | 380 | 335 | 552 | 4.93e-22 | 101 |
| MS.gene024779.t1 | AT2G32250 | 27.149 | 221 | 155 | 4 | 163 | 380 | 335 | 552 | 4.93e-22 | 101 |
| MS.gene024779.t1 | AT2G32250 | 27.149 | 221 | 155 | 4 | 163 | 380 | 335 | 552 | 5.05e-22 | 100 |
| MS.gene024779.t1 | AT2G32250 | 27.149 | 221 | 155 | 4 | 163 | 380 | 335 | 552 | 5.05e-22 | 100 |
| MS.gene024779.t1 | AT1G10240 | 25.478 | 314 | 209 | 10 | 139 | 449 | 370 | 661 | 2.97e-17 | 85.9 |
| MS.gene024779.t1 | AT1G10240 | 29.412 | 153 | 103 | 3 | 18 | 165 | 49 | 201 | 1.99e-11 | 67.4 |
| MS.gene024779.t1 | AT1G10240 | 25.478 | 314 | 209 | 10 | 139 | 449 | 370 | 661 | 2.97e-17 | 85.9 |
| MS.gene024779.t1 | AT1G10240 | 29.412 | 153 | 103 | 3 | 18 | 165 | 49 | 201 | 1.99e-11 | 67.4 |
| MS.gene024779.t1 | AT1G52520 | 25.000 | 292 | 179 | 7 | 172 | 441 | 420 | 693 | 5.85e-17 | 85.1 |
| MS.gene024779.t1 | AT5G28530 | 24.554 | 224 | 154 | 4 | 171 | 389 | 353 | 566 | 3.18e-14 | 76.3 |
| MS.gene024779.t1 | AT5G28530 | 24.554 | 224 | 154 | 4 | 171 | 389 | 416 | 629 | 3.66e-14 | 75.9 |
| MS.gene024779.t1 | AT5G28530 | 24.554 | 224 | 150 | 4 | 171 | 389 | 353 | 562 | 9.51e-14 | 74.7 |
| MS.gene024779.t1 | AT5G28530 | 24.554 | 224 | 150 | 4 | 171 | 389 | 416 | 625 | 1.08e-13 | 74.7 |
| MS.gene024779.t1 | AT5G28530 | 24.554 | 224 | 150 | 4 | 171 | 389 | 416 | 625 | 1.08e-13 | 74.7 |
Find 86 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATATTTGGAGTTATTT+AGG | 0.112891 | 5.3:+2361412 | MS.gene024779:CDS |
| TTCTGTGTTTGAATTTAAAT+TGG | 0.213517 | 5.3:-2362898 | None:intergenic |
| ATTATTCTTAAACCCTTCTT+TGG | 0.257903 | 5.3:-2361158 | None:intergenic |
| CAAATATTTGGAGTTATTTA+GGG | 0.270669 | 5.3:+2361413 | MS.gene024779:CDS |
| GTCATTCCTTTGGTCTTTGC+CGG | 0.288457 | 5.3:-2362984 | None:intergenic |
| CCTTTCTGAAGGCATATTCT+TGG | 0.293242 | 5.3:-2361057 | None:intergenic |
| GTATGCGAGTTACAAATATT+TGG | 0.295956 | 5.3:+2361401 | MS.gene024779:CDS |
| TCCTTCATTAGATATGTTAC+AGG | 0.315515 | 5.3:+2363253 | MS.gene024779:CDS |
| CTTCTGTGCTCTTATTTGTA+TGG | 0.320280 | 5.3:-2362695 | None:intergenic |
| GTCTTATTATAATTTAGTTT+TGG | 0.324636 | 5.3:+2362788 | MS.gene024779:CDS |
| TCTGTGTTTGAATTTAAATT+GGG | 0.367129 | 5.3:-2362897 | None:intergenic |
| ATGAATTCCTATCAACTTCA+TGG | 0.368033 | 5.3:+2362078 | MS.gene024779:CDS |
| CATTCACCATGGACTTTATG+AGG | 0.372652 | 5.3:-2361375 | None:intergenic |
| CAGGTTATAAAAGTGCAGTC+TGG | 0.397734 | 5.3:+2363851 | MS.gene024779:intron |
| CCTTTGGTCTTTGCCGGACG+TGG | 0.403247 | 5.3:-2362978 | None:intergenic |
| TCTTTGTAGTCATGCATTGC+GGG | 0.414873 | 5.3:+2362587 | MS.gene024779:CDS |
| TCTCAACCCGTTGAAATTGA+TGG | 0.428719 | 5.3:+2360974 | MS.gene024779:CDS |
| GAGAGTACAAATAGTGTGTT+GGG | 0.432233 | 5.3:+2362201 | MS.gene024779:CDS |
| TTGTCATAAGTTTGATTCCA+TGG | 0.432438 | 5.3:+2362560 | MS.gene024779:CDS |
| AGATTTAATGTGAGCAAGGA+AGG | 0.436528 | 5.3:+2361244 | MS.gene024779:CDS |
| GACATTTGACATATTTCTCA+TGG | 0.442957 | 5.3:-2361344 | None:intergenic |
| TGAGAGTACAAATAGTGTGT+TGG | 0.452339 | 5.3:+2362200 | MS.gene024779:CDS |
| CAGAAGGTTCGACAATGTAT+TGG | 0.459720 | 5.3:+2362870 | MS.gene024779:CDS |
| ACGAACATTAGTCATTCCTT+TGG | 0.461296 | 5.3:-2362994 | None:intergenic |
| ATGACTAATGTTCGTAAGAA+AGG | 0.462988 | 5.3:+2363002 | MS.gene024779:CDS |
| CGCAACAAATGCCTTTGCTC+AGG | 0.473041 | 5.3:-2361319 | None:intergenic |
| TTTGTGACCATGAAGTTGAT+AGG | 0.476903 | 5.3:-2362085 | None:intergenic |
| CAAGAATATGCCTTCAGAAA+GGG | 0.477601 | 5.3:+2361058 | MS.gene024779:CDS |
| GACGGTTTCTAATCCACGTC+CGG | 0.481007 | 5.3:+2362965 | MS.gene024779:CDS |
| AGGTTATAAAAGTGCAGTCT+GGG | 0.483789 | 5.3:+2363852 | MS.gene024779:intron |
| TTGGAGTTATTTAGGGGAAG+AGG | 0.485109 | 5.3:+2361420 | MS.gene024779:CDS |
| AAGAGGAATTTCAAAGCACT+TGG | 0.487235 | 5.3:+2362046 | MS.gene024779:CDS |
| AGTGTGTTGGGAGAGATTGT+AGG | 0.498551 | 5.3:+2362213 | MS.gene024779:CDS |
| ATCAACTTCATGGTCACAAA+TGG | 0.499307 | 5.3:+2362088 | MS.gene024779:CDS |
| TCTGACCCATCAATTTCAAC+GGG | 0.500790 | 5.3:-2360980 | None:intergenic |
| TGTCATAAGTTTGATTCCAT+GGG | 0.503094 | 5.3:+2362561 | MS.gene024779:CDS |
| TTCTGACCCATCAATTTCAA+CGG | 0.510463 | 5.3:-2360981 | None:intergenic |
| ACCTGTAACATATCTAATGA+AGG | 0.511088 | 5.3:-2363254 | None:intergenic |
| AATGAGTATCTTGATGGGAC+AGG | 0.511341 | 5.3:+2362411 | MS.gene024779:CDS |
| AAGAACAAATTGCAAAGCTA+TGG | 0.512487 | 5.3:+2361219 | MS.gene024779:CDS |
| ACAAATAAGAGCACAGAAGA+AGG | 0.515980 | 5.3:+2362699 | MS.gene024779:CDS |
| CCAAGAATATGCCTTCAGAA+AGG | 0.516475 | 5.3:+2361057 | MS.gene024779:CDS |
| CGAGGACAATGAATGCTTGA+CGG | 0.516812 | 5.3:+2362947 | MS.gene024779:CDS |
| GCGACAATTAGAGGTTGAAA+AGG | 0.527986 | 5.3:+2362284 | MS.gene024779:CDS |
| TTCTTTGTAGTCATGCATTG+CGG | 0.533194 | 5.3:+2362586 | MS.gene024779:CDS |
| CTCAACCCGTTGAAATTGAT+GGG | 0.534737 | 5.3:+2360975 | MS.gene024779:CDS |
| AATATTTGTAACTCGCATAC+CGG | 0.535536 | 5.3:-2361398 | None:intergenic |
| GCTTGATACTGCAGTTCAGA+AGG | 0.537750 | 5.3:+2362854 | MS.gene024779:CDS |
| AGAAATATGTCAAATGTCAA+AGG | 0.545496 | 5.3:+2361349 | MS.gene024779:CDS |
| AACAAATGCCTTTGCTCAGG+TGG | 0.559202 | 5.3:-2361316 | None:intergenic |
| GAAAGAATGCGACTCAGAAG+AGG | 0.559378 | 5.3:+2362029 | MS.gene024779:CDS |
| GCAAGTAATTCTTCAGTGGA+TGG | 0.564724 | 5.3:+2363182 | MS.gene024779:CDS |
| CACACTAAAACCCTTTCTGA+AGG | 0.567547 | 5.3:-2361068 | None:intergenic |
| ATAAAGTCCATGGTGAATGC+CGG | 0.567614 | 5.3:+2361379 | MS.gene024779:CDS |
| TGTACTCTCACTCCTTTGAG+AGG | 0.568833 | 5.3:-2362187 | None:intergenic |
| CCATGCAAGTAATTCTTCAG+TGG | 0.577546 | 5.3:+2363178 | MS.gene024779:CDS |
| ACTTTGTTCCACCTGAGCAA+AGG | 0.578696 | 5.3:+2361308 | MS.gene024779:CDS |
| GAAGGATAAACAACTGCAGA+AGG | 0.581877 | 5.3:-2363236 | None:intergenic |
| TTTAAGAATAATGAATCTGA+AGG | 0.582819 | 5.3:+2361169 | MS.gene024779:CDS |
| TGTATGAAATTCGTCACAAG+TGG | 0.587826 | 5.3:+2362121 | MS.gene024779:CDS |
| GGTGAGATTTAATGTGAGCA+AGG | 0.596375 | 5.3:+2361240 | MS.gene024779:CDS |
| CCACTGAAGAATTACTTGCA+TGG | 0.598732 | 5.3:-2363178 | None:intergenic |
| CTGTTATTTATGACGCGAGG+AGG | 0.599410 | 5.3:-2362330 | None:intergenic |
| AGGAGGCCTCATAAAGTCCA+TGG | 0.601163 | 5.3:+2361369 | MS.gene024779:CDS |
| TCGCATACCGGCATTCACCA+TGG | 0.601352 | 5.3:-2361386 | None:intergenic |
| GACAGGTGCAAGCACTTCTG+TGG | 0.604877 | 5.3:+2362428 | MS.gene024779:CDS |
| ATGTGAGCAAGGAAGGAGTG+TGG | 0.605680 | 5.3:+2361251 | MS.gene024779:CDS |
| CCACGTCCGGCAAAGACCAA+AGG | 0.605682 | 5.3:+2362978 | MS.gene024779:CDS |
| GCTCAGGTGGAACAAAGTCA+TGG | 0.606620 | 5.3:-2361303 | None:intergenic |
| AAGACCGACATCATCACCAT+TGG | 0.607860 | 5.3:-2362742 | None:intergenic |
| CTGGTATCAAATCCTCTCAA+AGG | 0.610021 | 5.3:+2362175 | MS.gene024779:CDS |
| AGAGGAATTTCAAAGCACTT+GGG | 0.610268 | 5.3:+2362047 | MS.gene024779:CDS |
| ATAACCAATGGTGATGATGT+CGG | 0.610590 | 5.3:+2362738 | MS.gene024779:CDS |
| ATTATAATAAGACTTCAGAA+TGG | 0.615362 | 5.3:-2362778 | None:intergenic |
| CGATAATATGTCATATCATG+AGG | 0.616676 | 5.3:+2362464 | MS.gene024779:CDS |
| AATGCTATGAATTATACGAA+CGG | 0.622555 | 5.3:+2363212 | MS.gene024779:CDS |
| ACTACAAGTTCAATAACCAA+TGG | 0.629006 | 5.3:+2362726 | MS.gene024779:CDS |
| AAATATTTGGAGTTATTTAG+GGG | 0.630032 | 5.3:+2361414 | MS.gene024779:CDS |
| GAACACTTTCTTGCAAAACG+AGG | 0.635297 | 5.3:+2362929 | MS.gene024779:CDS |
| AATATGTCAAATGTCAAAGG+AGG | 0.636188 | 5.3:+2361352 | MS.gene024779:CDS |
| AATTCGTCACAAGTGGAGCA+CGG | 0.645876 | 5.3:+2362128 | MS.gene024779:CDS |
| TCACTGTTATTTATGACGCG+AGG | 0.660596 | 5.3:-2362333 | None:intergenic |
| ATGACTACAAAGAATGCCCA+TGG | 0.670886 | 5.3:-2362577 | None:intergenic |
| TTTGGACTCTTCTACCACAA+CGG | 0.674168 | 5.3:+2362527 | MS.gene024779:CDS |
| AAGACTTCAGAATGGCATTG+CGG | 0.687925 | 5.3:-2362770 | None:intergenic |
| ACAACTGCAACTGACCGTTG+TGG | 0.765342 | 5.3:-2362541 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACATATGTAATCTTTTTA+AGG | + | chr5.3:2363728-2363747 | MS.gene024779:intron | 15.0% |
| !!! | GGTTATATTATTAAATTTTC+TGG | + | chr5.3:2363750-2363769 | MS.gene024779:intron | 15.0% |
| !!! | GTCTTATTATAATTTAGTTT+TGG | + | chr5.3:2362788-2362807 | MS.gene024779:CDS | 15.0% |
| !!! | TACATATGTAATCTTTTTAA+GGG | + | chr5.3:2363729-2363748 | MS.gene024779:intron | 15.0% |
| !! | AGAAAAGCAAAAAAAGATAA+AGG | + | chr5.3:2363053-2363072 | MS.gene024779:CDS | 20.0% |
| !! | ATTATAATAAGACTTCAGAA+TGG | - | chr5.3:2362781-2362800 | None:intergenic | 20.0% |
| !! | CTCATATAATTATTTAAGTC+AGG | + | chr5.3:2363407-2363426 | MS.gene024779:intron | 20.0% |
| !! | CTCATTTAAAAAATGCTTAA+AGG | - | chr5.3:2362397-2362416 | None:intergenic | 20.0% |
| !! | TCTGTGTTTGAATTTAAATT+GGG | - | chr5.3:2362900-2362919 | None:intergenic | 20.0% |
| !! | TTCTGTGTTTGAATTTAAAT+TGG | - | chr5.3:2362901-2362920 | None:intergenic | 20.0% |
| !! | TTTAAGAATAATGAATCTGA+AGG | + | chr5.3:2361169-2361188 | MS.gene024779:CDS | 20.0% |
| !!! | AAATATTTGGAGTTATTTAG+GGG | + | chr5.3:2361414-2361433 | MS.gene024779:CDS | 20.0% |
| !!! | AATATCTGCTTTGTTTATAT+AGG | + | chr5.3:2363774-2363793 | MS.gene024779:intron | 20.0% |
| !!! | ACAAATATTTGGAGTTATTT+AGG | + | chr5.3:2361412-2361431 | MS.gene024779:CDS | 20.0% |
| !!! | CAAATATTTGGAGTTATTTA+GGG | + | chr5.3:2361413-2361432 | MS.gene024779:CDS | 20.0% |
| !!! | TAAATATTGTTTTTGGTTGT+TGG | - | chr5.3:2361855-2361874 | None:intergenic | 20.0% |
| !!! | TGATCTGTAAATATTGTTTT+TGG | - | chr5.3:2361862-2361881 | None:intergenic | 20.0% |
| !!! | TTTTAAATGAGTATCTTGAT+GGG | + | chr5.3:2362406-2362425 | MS.gene024779:CDS | 20.0% |
| !!! | TTTTTAAATGAGTATCTTGA+TGG | + | chr5.3:2362405-2362424 | MS.gene024779:CDS | 20.0% |
| ! | AATGCTATGAATTATACGAA+CGG | + | chr5.3:2363212-2363231 | MS.gene024779:CDS | 25.0% |
| ! | ACAAATCAAGTCATACTTAT+TGG | - | chr5.3:2361710-2361729 | None:intergenic | 25.0% |
| ! | ACAATAATTTGATCTTAGGA+TGG | + | chr5.3:2363621-2363640 | MS.gene024779:intron | 25.0% |
| ! | AGAAATATGTCAAATGTCAA+AGG | + | chr5.3:2361349-2361368 | MS.gene024779:CDS | 25.0% |
| ! | ATTATTCTTAAACCCTTCTT+TGG | - | chr5.3:2361161-2361180 | None:intergenic | 25.0% |
| ! | CATTGGCAAAATGTAATATT+TGG | + | chr5.3:2361754-2361773 | MS.gene024779:intron | 25.0% |
| ! | GGTAACAATAATTTGATCTT+AGG | + | chr5.3:2363617-2363636 | MS.gene024779:intron | 25.0% |
| ! | TACTTTGAACAACCAATTAA+AGG | - | chr5.3:2361812-2361831 | None:intergenic | 25.0% |
| !! | AAAGTTGATTATGATTGCTT+TGG | + | chr5.3:2361652-2361671 | MS.gene024779:intron | 25.0% |
| !! | AAGTTGATTATGATTGCTTT+GGG | + | chr5.3:2361653-2361672 | MS.gene024779:intron | 25.0% |
| !! | ACTAAAAATGTATTTTCTGC+TGG | + | chr5.3:2362156-2362175 | MS.gene024779:CDS | 25.0% |
| !! | ATATTACATTTTGCCAATGA+TGG | - | chr5.3:2361753-2361772 | None:intergenic | 25.0% |
| !! | CATACCCAATAAAAAGTATA+TGG | + | chr5.3:2362500-2362519 | MS.gene024779:CDS | 25.0% |
| !! | TAAAAAGTATATGGTGACTT+TGG | + | chr5.3:2362509-2362528 | MS.gene024779:CDS | 25.0% |
| !! | TCATTTAGTTCCTTATTACA+AGG | + | chr5.3:2363378-2363397 | MS.gene024779:intron | 25.0% |
| !!! | AGTCACCATATACTTTTTAT+TGG | - | chr5.3:2362508-2362527 | None:intergenic | 25.0% |
| !!! | AGTTTTATTGTTCCAAAGAA+GGG | + | chr5.3:2361146-2361165 | MS.gene024779:CDS | 25.0% |
| !!! | GGATGTTTTAAATGATACAA+TGG | + | chr5.3:2363642-2363661 | MS.gene024779:intron | 25.0% |
| !!! | GTCACCATATACTTTTTATT+GGG | - | chr5.3:2362507-2362526 | None:intergenic | 25.0% |
| !!! | TTGGTTGTTCAAAGTATTTT+TGG | + | chr5.3:2361816-2361835 | MS.gene024779:intron | 25.0% |
| AAAAAATGCTCCTTCTCATT+TGG | + | chr5.3:2361957-2361976 | MS.gene024779:intron | 30.0% | |
| AAAAATGCTCCTTCTCATTT+GGG | + | chr5.3:2361958-2361977 | MS.gene024779:intron | 30.0% | |
| AAACCTCTGTTTCCTTTAAT+TGG | + | chr5.3:2361797-2361816 | MS.gene024779:intron | 30.0% | |
| AAGAACAAATTGCAAAGCTA+TGG | + | chr5.3:2361219-2361238 | MS.gene024779:CDS | 30.0% | |
| AAGAAGCAAGAAAAATCATG+TGG | + | chr5.3:2362826-2362845 | MS.gene024779:CDS | 30.0% | |
| AAGGAACTAAATGAAGTTGA+TGG | - | chr5.3:2363372-2363391 | None:intergenic | 30.0% | |
| AATATGTCAAATGTCAAAGG+AGG | + | chr5.3:2361352-2361371 | MS.gene024779:CDS | 30.0% | |
| AATATTTGTAACTCGCATAC+CGG | - | chr5.3:2361401-2361420 | None:intergenic | 30.0% | |
| ACCAGTACATCTTAAAAAGA+TGG | + | chr5.3:2362643-2362662 | MS.gene024779:CDS | 30.0% | |
| ACCTGTAACATATCTAATGA+AGG | - | chr5.3:2363257-2363276 | None:intergenic | 30.0% | |
| ACTACAAGTTCAATAACCAA+TGG | + | chr5.3:2362726-2362745 | MS.gene024779:CDS | 30.0% | |
| AGAAGCAAGAAAAATCATGT+GGG | + | chr5.3:2362827-2362846 | MS.gene024779:CDS | 30.0% | |
| AGAGGTTTCATTAAGTAACA+AGG | - | chr5.3:2361785-2361804 | None:intergenic | 30.0% | |
| AGTTGATTATGATTGCTTTG+GGG | + | chr5.3:2361654-2361673 | MS.gene024779:intron | 30.0% | |
| ATGAATTCCTATCAACTTCA+TGG | + | chr5.3:2362078-2362097 | MS.gene024779:CDS | 30.0% | |
| ATGACTAATGTTCGTAAGAA+AGG | + | chr5.3:2363002-2363021 | MS.gene024779:CDS | 30.0% | |
| CAAGTAACAATACTTAAGAC+AGG | + | chr5.3:2363596-2363615 | MS.gene024779:intron | 30.0% | |
| CGATAATATGTCATATCATG+AGG | + | chr5.3:2362464-2362483 | MS.gene024779:CDS | 30.0% | |
| GACATTTGACATATTTCTCA+TGG | - | chr5.3:2361347-2361366 | None:intergenic | 30.0% | |
| GTATGCGAGTTACAAATATT+TGG | + | chr5.3:2361401-2361420 | MS.gene024779:CDS | 30.0% | |
| TCCTTCATTAGATATGTTAC+AGG | + | chr5.3:2363253-2363272 | MS.gene024779:CDS | 30.0% | |
| TGCACACTATAATAGAACAT+AGG | - | chr5.3:2361580-2361599 | None:intergenic | 30.0% | |
| TGTCATAAGTTTGATTCCAT+GGG | + | chr5.3:2362561-2362580 | MS.gene024779:CDS | 30.0% | |
| TTGTCATAAGTTTGATTCCA+TGG | + | chr5.3:2362560-2362579 | MS.gene024779:CDS | 30.0% | |
| ! | ATGGATTATGTTGCTGTTAT+AGG | - | chr5.3:2363353-2363372 | None:intergenic | 30.0% |
| ! | CTGTCTTAAGTATTGTTACT+TGG | - | chr5.3:2363598-2363617 | None:intergenic | 30.0% |
| ! | TCTTAAGTATTGTTACTTGG+AGG | - | chr5.3:2363595-2363614 | None:intergenic | 30.0% |
| ! | TTGCAGCAATCTTCTAATTT+TGG | + | chr5.3:2363562-2363581 | MS.gene024779:intron | 30.0% |
| !! | AGCAATCTTCTAATTTTGGT+TGG | + | chr5.3:2363566-2363585 | MS.gene024779:intron | 30.0% |
| !!! | AAAGTATTTTTGGAGAGTCT+GGG | + | chr5.3:2361826-2361845 | MS.gene024779:intron | 30.0% |
| !!! | ACCATCTTTTTAAGATGTAC+TGG | - | chr5.3:2362647-2362666 | None:intergenic | 30.0% |
| !!! | CACACAATTTTTTGAGAAGA+TGG | + | chr5.3:2362251-2362270 | MS.gene024779:CDS | 30.0% |
| !!! | GAGTTTTATTGTTCCAAAGA+AGG | + | chr5.3:2361145-2361164 | MS.gene024779:CDS | 30.0% |
| !!! | GCAATCTTCTAATTTTGGTT+GGG | + | chr5.3:2363567-2363586 | MS.gene024779:intron | 30.0% |
| AAGCTGAAATTGATTGAAGC+TGG | + | chr5.3:2361505-2361524 | MS.gene024779:intron | 35.0% | |
| ACGAACATTAGTCATTCCTT+TGG | - | chr5.3:2362997-2363016 | None:intergenic | 35.0% | |
| AGATTTAATGTGAGCAAGGA+AGG | + | chr5.3:2361244-2361263 | MS.gene024779:CDS | 35.0% | |
| AGCTGAAATTGATTGAAGCT+GGG | + | chr5.3:2361506-2361525 | MS.gene024779:intron | 35.0% | |
| ATCAACTTCATGGTCACAAA+TGG | + | chr5.3:2362088-2362107 | MS.gene024779:CDS | 35.0% | |
| ATGGTTTACACCAACAAATG+GGG | - | chr5.3:2361734-2361753 | None:intergenic | 35.0% | |
| CAACCAATTAAAGGAAACAG+AGG | - | chr5.3:2361803-2361822 | None:intergenic | 35.0% | |
| CAAGAATATGCCTTCAGAAA+GGG | + | chr5.3:2361058-2361077 | MS.gene024779:CDS | 35.0% | |
| CATGTCATCGTTTGTGTTTA+TGG | + | chr5.3:2361926-2361945 | MS.gene024779:intron | 35.0% | |
| GATGGTTTACACCAACAAAT+GGG | - | chr5.3:2361735-2361754 | None:intergenic | 35.0% | |
| GTAGTAGGATCAAAACATCT+TGG | - | chr5.3:2363805-2363824 | None:intergenic | 35.0% | |
| TGAAAAACACAGTAAACCAG+TGG | - | chr5.3:2363833-2363852 | None:intergenic | 35.0% | |
| TGAGTTCACTCCTTGTAATA+AGG | - | chr5.3:2363391-2363410 | None:intergenic | 35.0% | |
| TGATGGTTTACACCAACAAA+TGG | - | chr5.3:2361736-2361755 | None:intergenic | 35.0% | |
| TGTATGAAATTCGTCACAAG+TGG | + | chr5.3:2362121-2362140 | MS.gene024779:CDS | 35.0% | |
| TTCTGACCCATCAATTTCAA+CGG | - | chr5.3:2360984-2361003 | None:intergenic | 35.0% | |
| TTCTTTGTAGTCATGCATTG+CGG | + | chr5.3:2362586-2362605 | MS.gene024779:CDS | 35.0% | |
| TTGAGAAGATGGTGAAAAAG+TGG | + | chr5.3:2362262-2362281 | MS.gene024779:CDS | 35.0% | |
| TTGTTGGTGTAAACCATCAT+TGG | + | chr5.3:2361737-2361756 | MS.gene024779:intron | 35.0% | |
| ! | AAGAGGAATTTCAAAGCACT+TGG | + | chr5.3:2362046-2362065 | MS.gene024779:CDS | 35.0% |
| ! | AATTTTGCGACATGCATCTA+TGG | + | chr5.3:2362356-2362375 | MS.gene024779:CDS | 35.0% |
| ! | ACAAATAAGAGCACAGAAGA+AGG | + | chr5.3:2362699-2362718 | MS.gene024779:CDS | 35.0% |
| ! | AGAGGAATTTCAAAGCACTT+GGG | + | chr5.3:2362047-2362066 | MS.gene024779:CDS | 35.0% |
| ! | AGGTTATAAAAGTGCAGTCT+GGG | + | chr5.3:2363852-2363871 | MS.gene024779:intron | 35.0% |
| ! | ATAACCAATGGTGATGATGT+CGG | + | chr5.3:2362738-2362757 | MS.gene024779:CDS | 35.0% |
| ! | CTTCTGTGCTCTTATTTGTA+TGG | - | chr5.3:2362698-2362717 | None:intergenic | 35.0% |
| ! | GAGAGTACAAATAGTGTGTT+GGG | + | chr5.3:2362201-2362220 | MS.gene024779:CDS | 35.0% |
| ! | GGGTCAGAAGAAATTTTTCT+TGG | + | chr5.3:2360995-2361014 | MS.gene024779:CDS | 35.0% |
| ! | TGAGAGTACAAATAGTGTGT+TGG | + | chr5.3:2362200-2362219 | MS.gene024779:CDS | 35.0% |
| ! | TTTGTGACCATGAAGTTGAT+AGG | - | chr5.3:2362088-2362107 | None:intergenic | 35.0% |
| !! | AAAGGGTTTTAGTGTGAGAA+AGG | + | chr5.3:2361075-2361094 | MS.gene024779:CDS | 35.0% |
| !! | AAGGGTTTTAGTGTGAGAAA+GGG | + | chr5.3:2361076-2361095 | MS.gene024779:CDS | 35.0% |
| !! | ACTGGTTTACTGTGTTTTTC+AGG | + | chr5.3:2363832-2363851 | MS.gene024779:intron | 35.0% |
| !!! | CAAAGTATTTTTGGAGAGTC+TGG | + | chr5.3:2361825-2361844 | MS.gene024779:intron | 35.0% |
| !!! | CTTTTTAAGATGTACTGGTC+TGG | - | chr5.3:2362642-2362661 | None:intergenic | 35.0% |
| AAACCAGTGGCTATAGTAGT+AGG | - | chr5.3:2363820-2363839 | None:intergenic | 40.0% | |
| AAGACTTCAGAATGGCATTG+CGG | - | chr5.3:2362773-2362792 | None:intergenic | 40.0% | |
| AATGAGTATCTTGATGGGAC+AGG | + | chr5.3:2362411-2362430 | MS.gene024779:CDS | 40.0% | |
| ACCATCTCTCCAAAAGACAT+TGG | - | chr5.3:2361626-2361645 | None:intergenic | 40.0% | |
| AGTTATTTAGGGGAAGAGGT+CGG | + | chr5.3:2361424-2361443 | MS.gene024779:intron | 40.0% | |
| ATAAAGTCCATGGTGAATGC+CGG | + | chr5.3:2361379-2361398 | MS.gene024779:CDS | 40.0% | |
| ATGACTACAAAGAATGCCCA+TGG | - | chr5.3:2362580-2362599 | None:intergenic | 40.0% | |
| CACAAACGATGACATGCATT+TGG | - | chr5.3:2361922-2361941 | None:intergenic | 40.0% | |
| CACACTAAAACCCTTTCTGA+AGG | - | chr5.3:2361071-2361090 | None:intergenic | 40.0% | |
| CAGAAGGTTCGACAATGTAT+TGG | + | chr5.3:2362870-2362889 | MS.gene024779:CDS | 40.0% | |
| CATTCACCATGGACTTTATG+AGG | - | chr5.3:2361378-2361397 | None:intergenic | 40.0% | |
| CCAAGAATATGCCTTCAGAA+AGG | + | chr5.3:2361057-2361076 | MS.gene024779:CDS | 40.0% | |
| CCACTGAAGAATTACTTGCA+TGG | - | chr5.3:2363181-2363200 | None:intergenic | 40.0% | |
| CCATGCAAGTAATTCTTCAG+TGG | + | chr5.3:2363178-2363197 | MS.gene024779:CDS | 40.0% | |
| CCGTGACAAATCAGTATGTA+CGG | - | chr5.3:2363523-2363542 | None:intergenic | 40.0% | |
| CTCAACCCGTTGAAATTGAT+GGG | + | chr5.3:2360975-2360994 | MS.gene024779:CDS | 40.0% | |
| CTGGTATCAAATCCTCTCAA+AGG | + | chr5.3:2362175-2362194 | MS.gene024779:CDS | 40.0% | |
| GAAAAAGTGGCGACAATTAG+AGG | + | chr5.3:2362275-2362294 | MS.gene024779:CDS | 40.0% | |
| GAACACTTTCTTGCAAAACG+AGG | + | chr5.3:2362929-2362948 | MS.gene024779:CDS | 40.0% | |
| GAAGGATAAACAACTGCAGA+AGG | - | chr5.3:2363239-2363258 | None:intergenic | 40.0% | |
| GCAAGTAATTCTTCAGTGGA+TGG | + | chr5.3:2363182-2363201 | MS.gene024779:CDS | 40.0% | |
| GCGACAATTAGAGGTTGAAA+AGG | + | chr5.3:2362284-2362303 | MS.gene024779:CDS | 40.0% | |
| GCTGAAATTGATTGAAGCTG+GGG | + | chr5.3:2361507-2361526 | MS.gene024779:intron | 40.0% | |
| GGTGAGATTTAATGTGAGCA+AGG | + | chr5.3:2361240-2361259 | MS.gene024779:CDS | 40.0% | |
| GTCGGTGGATATAACAATCT+CGG | + | chr5.3:2361442-2361461 | MS.gene024779:intron | 40.0% | |
| TAGGATCAAAACATCTTGGC+TGG | - | chr5.3:2363801-2363820 | None:intergenic | 40.0% | |
| TCTCAACCCGTTGAAATTGA+TGG | + | chr5.3:2360974-2360993 | MS.gene024779:CDS | 40.0% | |
| TCTGACCCATCAATTTCAAC+GGG | - | chr5.3:2360983-2361002 | None:intergenic | 40.0% | |
| TCTTTGTAGTCATGCATTGC+GGG | + | chr5.3:2362587-2362606 | MS.gene024779:CDS | 40.0% | |
| TTGAGAGATCCCAAATGAGA+AGG | - | chr5.3:2361970-2361989 | None:intergenic | 40.0% | |
| TTGGAGTTATTTAGGGGAAG+AGG | + | chr5.3:2361420-2361439 | MS.gene024779:CDS | 40.0% | |
| TTTGGACTCTTCTACCACAA+CGG | + | chr5.3:2362527-2362546 | MS.gene024779:CDS | 40.0% | |
| ! | CACGTTTGACCAATGTCTTT+TGG | + | chr5.3:2361614-2361633 | MS.gene024779:intron | 40.0% |
| ! | CAGGTTATAAAAGTGCAGTC+TGG | + | chr5.3:2363851-2363870 | MS.gene024779:intron | 40.0% |
| ! | CCTTTCTGAAGGCATATTCT+TGG | - | chr5.3:2361060-2361079 | None:intergenic | 40.0% |
| ! | TCACTGTTATTTATGACGCG+AGG | - | chr5.3:2362336-2362355 | None:intergenic | 40.0% |
| !! | ACCAATGTCTTTTGGAGAGA+TGG | + | chr5.3:2361622-2361641 | MS.gene024779:intron | 40.0% |
| !! | AGGGTTTTAGTGTGAGAAAG+GGG | + | chr5.3:2361077-2361096 | MS.gene024779:CDS | 40.0% |
| !! | CCGTACATACTGATTTGTCA+CGG | + | chr5.3:2363520-2363539 | MS.gene024779:intron | 40.0% |
| !! | CGTACATACTGATTTGTCAC+GGG | + | chr5.3:2363521-2363540 | MS.gene024779:intron | 40.0% |
| !! | TTGATTTGTGCCCCATTTGT+TGG | + | chr5.3:2361721-2361740 | MS.gene024779:intron | 40.0% |
| AACAAATGCCTTTGCTCAGG+TGG | - | chr5.3:2361319-2361338 | None:intergenic | 45.0% | |
| AAGACCGACATCATCACCAT+TGG | - | chr5.3:2362745-2362764 | None:intergenic | 45.0% | |
| AATTCGTCACAAGTGGAGCA+CGG | + | chr5.3:2362128-2362147 | MS.gene024779:CDS | 45.0% | |
| ACAGATCAAGCTGCAGCTAT+GGG | + | chr5.3:2361874-2361893 | MS.gene024779:intron | 45.0% | |
| ACTTTGTTCCACCTGAGCAA+AGG | + | chr5.3:2361308-2361327 | MS.gene024779:CDS | 45.0% | |
| AGTGTGTTGGGAGAGATTGT+AGG | + | chr5.3:2362213-2362232 | MS.gene024779:CDS | 45.0% | |
| CGAGGACAATGAATGCTTGA+CGG | + | chr5.3:2362947-2362966 | MS.gene024779:CDS | 45.0% | |
| GAAAGAATGCGACTCAGAAG+AGG | + | chr5.3:2362029-2362048 | MS.gene024779:CDS | 45.0% | |
| GATCCTACTACTATAGCCAC+TGG | + | chr5.3:2363814-2363833 | MS.gene024779:intron | 45.0% | |
| GCTTGATACTGCAGTTCAGA+AGG | + | chr5.3:2362854-2362873 | MS.gene024779:CDS | 45.0% | |
| TACAGATCAAGCTGCAGCTA+TGG | + | chr5.3:2361873-2361892 | MS.gene024779:intron | 45.0% | |
| TGTACTCTCACTCCTTTGAG+AGG | - | chr5.3:2362190-2362209 | None:intergenic | 45.0% | |
| ! | CTGTTATTTATGACGCGAGG+AGG | - | chr5.3:2362333-2362352 | None:intergenic | 45.0% |
| ! | GTCATTCCTTTGGTCTTTGC+CGG | - | chr5.3:2362987-2363006 | None:intergenic | 45.0% |
| ACAACTGCAACTGACCGTTG+TGG | - | chr5.3:2362544-2362563 | None:intergenic | 50.0% | |
| AGGAGGCCTCATAAAGTCCA+TGG | + | chr5.3:2361369-2361388 | MS.gene024779:CDS | 50.0% | |
| ATGTGAGCAAGGAAGGAGTG+TGG | + | chr5.3:2361251-2361270 | MS.gene024779:CDS | 50.0% | |
| CGCAACAAATGCCTTTGCTC+AGG | - | chr5.3:2361322-2361341 | None:intergenic | 50.0% | |
| GACGGTTTCTAATCCACGTC+CGG | + | chr5.3:2362965-2362984 | MS.gene024779:CDS | 50.0% | |
| GCAGCTATGGGCAAAGCAAT+CGG | + | chr5.3:2361886-2361905 | MS.gene024779:intron | 50.0% | |
| GCTCAGGTGGAACAAAGTCA+TGG | - | chr5.3:2361306-2361325 | None:intergenic | 50.0% | |
| TATTTAGGGGAAGAGGTCGG+TGG | + | chr5.3:2361427-2361446 | MS.gene024779:intron | 50.0% | |
| GACAGGTGCAAGCACTTCTG+TGG | + | chr5.3:2362428-2362447 | MS.gene024779:CDS | 55.0% | |
| TCGCATACCGGCATTCACCA+TGG | - | chr5.3:2361389-2361408 | None:intergenic | 55.0% | |
| CCACGTCCGGCAAAGACCAA+AGG | + | chr5.3:2362978-2362997 | MS.gene024779:CDS | 60.0% | |
| ! | CCTTTGGTCTTTGCCGGACG+TGG | - | chr5.3:2362981-2363000 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 2360959 | 2363892 | 2360959 | ID=MS.gene024779 |
| chr5.3 | mRNA | 2360959 | 2363892 | 2360959 | ID=MS.gene024779.t1;Parent=MS.gene024779 |
| chr5.3 | exon | 2360959 | 2361441 | 2360959 | ID=MS.gene024779.t1.exon1;Parent=MS.gene024779.t1 |
| chr5.3 | CDS | 2360959 | 2361441 | 2360959 | ID=cds.MS.gene024779.t1;Parent=MS.gene024779.t1 |
| chr5.3 | exon | 2362021 | 2363074 | 2362021 | ID=MS.gene024779.t1.exon2;Parent=MS.gene024779.t1 |
| chr5.3 | CDS | 2362021 | 2363074 | 2362021 | ID=cds.MS.gene024779.t1;Parent=MS.gene024779.t1 |
| chr5.3 | exon | 2363156 | 2363274 | 2363156 | ID=MS.gene024779.t1.exon3;Parent=MS.gene024779.t1 |
| chr5.3 | CDS | 2363156 | 2363274 | 2363156 | ID=cds.MS.gene024779.t1;Parent=MS.gene024779.t1 |
| chr5.3 | exon | 2363854 | 2363892 | 2363854 | ID=MS.gene024779.t1.exon4;Parent=MS.gene024779.t1 |
| chr5.3 | CDS | 2363854 | 2363892 | 2363854 | ID=cds.MS.gene024779.t1;Parent=MS.gene024779.t1 |
| Gene Sequence |
| Protein sequence |
