Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024795.t1 | XP_003610822.1 | 99.2 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 6.50E-141 | 510 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024795.t1 | Q9M8T9 | 60.2 | 221 | 87 | 1 | 12 | 232 | 25 | 244 | 1.4e-72 | 274.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024795.t1 | B7FKF5 | 99.2 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 4.7e-141 | 510.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene024795.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024795.t1 | MTR_5g007400 | 99.222 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 0.0 | 524 |
| MS.gene024795.t1 | MTR_5g098790 | 28.289 | 152 | 86 | 3 | 17 | 168 | 14 | 142 | 1.23e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024795.t1 | AT5G16800 | 59.459 | 259 | 101 | 2 | 1 | 257 | 14 | 270 | 6.98e-107 | 310 |
| MS.gene024795.t1 | AT5G16800 | 56.870 | 262 | 106 | 3 | 1 | 257 | 14 | 273 | 1.54e-97 | 286 |
| MS.gene024795.t1 | AT5G16800 | 61.062 | 226 | 82 | 1 | 1 | 226 | 14 | 233 | 6.27e-96 | 281 |
| MS.gene024795.t1 | AT3G02980 | 60.181 | 221 | 87 | 1 | 12 | 232 | 25 | 244 | 7.31e-95 | 279 |
| MS.gene024795.t1 | AT3G02980 | 55.333 | 150 | 66 | 1 | 83 | 232 | 26 | 174 | 2.28e-56 | 178 |
| MS.gene024795.t1 | AT5G11340 | 27.607 | 163 | 94 | 4 | 17 | 179 | 14 | 152 | 2.94e-14 | 68.9 |
Find 55 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTGACTAGACCCTTTC+GGG | 0.206622 | 5.3:+2217270 | None:intergenic |
| TTATTCGTGCACTACGTAAA+TGG | 0.221441 | 5.3:-2215269 | MS.gene024795:CDS |
| CTACGTGAAGAGTGGCTTTA+AGG | 0.221630 | 5.3:-2214734 | MS.gene024795:CDS |
| GGCCAAAGTGATGAACTTAT+TGG | 0.280025 | 5.3:-2217005 | MS.gene024795:CDS |
| GGGAGTAGTGGAAGCATATA+GGG | 0.323949 | 5.3:-2215567 | MS.gene024795:CDS |
| TTTGATTGACTAGACCCTTT+CGG | 0.334623 | 5.3:+2217269 | None:intergenic |
| CACTAAAGTCTGGTCAGATT+TGG | 0.334799 | 5.3:+2215604 | None:intergenic |
| TATTCGTGCACTACGTAAAT+GGG | 0.359781 | 5.3:-2215268 | MS.gene024795:CDS |
| TGGGAGTAGTGGAAGCATAT+AGG | 0.379806 | 5.3:-2215568 | MS.gene024795:CDS |
| GCATATAGGGGCCTTGGAAT+AGG | 0.403458 | 5.3:-2215554 | MS.gene024795:intron |
| CACCAGCTTCTTCTTTGATA+CGG | 0.412039 | 5.3:-2215457 | MS.gene024795:intron |
| TCAAAATCAGACGGTCGTAT+AGG | 0.418162 | 5.3:+2217233 | None:intergenic |
| ATGGTAGATTATTTCCCATC+AGG | 0.419207 | 5.3:-2217193 | MS.gene024795:intron |
| GTGGAAGCATATAGGGGCCT+TGG | 0.421160 | 5.3:-2215560 | MS.gene024795:CDS |
| AGTTCATCACTTTGGCCATT+CGG | 0.428159 | 5.3:+2217011 | None:intergenic |
| ACCAGCTTCTTCTTTGATAC+GGG | 0.449831 | 5.3:-2215456 | MS.gene024795:intron |
| CAAGTGTGTTAGAAAGCTGC+AGG | 0.455738 | 5.3:-2215330 | MS.gene024795:CDS |
| ATCCAATAAGTTCATCACTT+TGG | 0.471996 | 5.3:+2217003 | None:intergenic |
| AGCTGTGCAAGAACGAAGTT+AGG | 0.483514 | 5.3:-2214699 | MS.gene024795:CDS |
| TGCACTTACAATGGCGAGCA+AGG | 0.487162 | 5.3:+2215236 | None:intergenic |
| AACTTCGTTCTTGCACAGCT+TGG | 0.497962 | 5.3:+2214702 | None:intergenic |
| TTGTAGATAGTGGATTTGCT+TGG | 0.513932 | 5.3:-2215638 | MS.gene024795:intron |
| CGAAGATGTGGTGAACAGAC+GGG | 0.516575 | 5.3:-2217069 | MS.gene024795:CDS |
| TTTAGTGTATGTTCTAACAC+TGG | 0.518861 | 5.3:-2215588 | MS.gene024795:CDS |
| TTAGAACATACACTAAAGTC+TGG | 0.520023 | 5.3:+2215594 | None:intergenic |
| TTGAGAGTGAGACAAGAGAA+TGG | 0.529226 | 5.3:+2214644 | None:intergenic |
| GATCAATGGTAAACCCGAAA+GGG | 0.533764 | 5.3:-2217283 | None:intergenic |
| TCGAAGATGTGGTGAACAGA+CGG | 0.541792 | 5.3:-2217070 | MS.gene024795:CDS |
| CAGACGGGATATTGTGTCGT+GGG | 0.543303 | 5.3:-2217054 | MS.gene024795:CDS |
| TGTTCTAACACTGGGAGTAG+TGG | 0.563129 | 5.3:-2215579 | MS.gene024795:CDS |
| TGTTCTTGCAAAAGAAAGTG+AGG | 0.573579 | 5.3:-2216964 | MS.gene024795:intron |
| GAAGAGTGGCTTTAAGGCAG+TGG | 0.581385 | 5.3:-2214728 | MS.gene024795:CDS |
| AACATGGCAGTCGAGTCTAC+TGG | 0.586352 | 5.3:-2214604 | MS.gene024795:CDS |
| CGATCAATGGTAAACCCGAA+AGG | 0.590054 | 5.3:-2217284 | None:intergenic |
| AGCTTCTTCTTTGATACGGG+AGG | 0.591740 | 5.3:-2215453 | MS.gene024795:CDS |
| ACAAACTGCTACCTATTCCA+AGG | 0.593056 | 5.3:+2215543 | None:intergenic |
| TTAGTGTATGTTCTAACACT+GGG | 0.599355 | 5.3:-2215587 | MS.gene024795:CDS |
| TTTGTAAGCTACGTGAAGAG+TGG | 0.599551 | 5.3:-2214742 | MS.gene024795:CDS |
| ACACGATGATCTCACCTGAT+GGG | 0.613102 | 5.3:+2217179 | None:intergenic |
| ATTCGTGCACTACGTAAATG+GGG | 0.616046 | 5.3:-2215267 | MS.gene024795:CDS |
| GTTGATCTTAGTCGACCGAA+TGG | 0.627310 | 5.3:-2217026 | MS.gene024795:CDS |
| ACGAAGTTAGGAAGATCTCA+AGG | 0.631340 | 5.3:-2214687 | MS.gene024795:CDS |
| AGTTAGGAAGATCTCAAGGT+GGG | 0.635024 | 5.3:-2214683 | MS.gene024795:CDS |
| GGAGTAGTGGAAGCATATAG+GGG | 0.641948 | 5.3:-2215566 | MS.gene024795:CDS |
| AAGTGTGTTAGAAAGCTGCA+GGG | 0.647080 | 5.3:-2215329 | MS.gene024795:CDS |
| TTCGTGCACTACGTAAATGG+GGG | 0.654674 | 5.3:-2215266 | MS.gene024795:CDS |
| ACAGACGGGATATTGTGTCG+TGG | 0.662598 | 5.3:-2217055 | MS.gene024795:CDS |
| TCACGTGCAAGTAAACCGCT+CGG | 0.669384 | 5.3:+2215399 | None:intergenic |
| AAGCATTCCAACGTGCCGAG+CGG | 0.675262 | 5.3:-2215414 | MS.gene024795:CDS |
| AGACGGGATATTGTGTCGTG+GGG | 0.679193 | 5.3:-2217053 | MS.gene024795:CDS |
| AATACCCAACAAAAGAAACA+TGG | 0.688655 | 5.3:-2214620 | MS.gene024795:CDS |
| TCTAAAACGTCAAAATCAGA+CGG | 0.689832 | 5.3:+2217224 | None:intergenic |
| AAGTAAACCGCTCGGCACGT+TGG | 0.692398 | 5.3:+2215407 | None:intergenic |
| AAGTTAGGAAGATCTCAAGG+TGG | 0.739682 | 5.3:-2214684 | MS.gene024795:CDS |
| TTATTGGATTTGTAACAGCG+CGG | 0.789219 | 5.3:-2216989 | MS.gene024795:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATTTATTTTAATATTCT+TGG | - | chr5.3:2215388-2215407 | MS.gene024795:CDS | 10.0% |
| !! | ATATTGAAGTCTAATAAATT+CGG | + | chr5.3:2216987-2217006 | None:intergenic | 15.0% |
| !! | ATTAAAATAAATACTCCAAA+TGG | + | chr5.3:2215383-2215402 | None:intergenic | 15.0% |
| !! | TTAAAATAAATACTCCAAAT+GGG | + | chr5.3:2215382-2215401 | None:intergenic | 15.0% |
| !!! | ATTTACTTGTTTTCTATAAA+GGG | - | chr5.3:2215058-2215077 | MS.gene024795:intron | 15.0% |
| !!! | ATTTATTTTAATATTCTTGG+AGG | - | chr5.3:2215391-2215410 | MS.gene024795:CDS | 15.0% |
| !!! | TTCCTTTTATCTATAAAAAA+CGG | - | chr5.3:2217045-2217064 | MS.gene024795:CDS | 15.0% |
| !! | AATAAACAATTATCAGCAAA+AGG | + | chr5.3:2216190-2216209 | None:intergenic | 20.0% |
| !! | AATATTATTCTTGTAGATAG+TGG | - | chr5.3:2216218-2216237 | MS.gene024795:intron | 20.0% |
| !! | ACTACAATATATATTCCTAA+TGG | + | chr5.3:2215508-2215527 | None:intergenic | 20.0% |
| !! | ATAAAAATGAATCATAGTGT+TGG | + | chr5.3:2216581-2216600 | None:intergenic | 20.0% |
| !! | ATGCATACAGTTATATATAA+AGG | + | chr5.3:2214935-2214954 | None:intergenic | 20.0% |
| !! | ATGGAAAATAAAATTCTCTA+AGG | + | chr5.3:2217076-2217095 | None:intergenic | 20.0% |
| !! | ATTAGGAATATATATTGTAG+TGG | - | chr5.3:2215507-2215526 | MS.gene024795:intron | 20.0% |
| !! | TATAACACCAATTGATAAAT+TGG | + | chr5.3:2216048-2216067 | None:intergenic | 20.0% |
| !! | TGCATACAGTTATATATAAA+GGG | + | chr5.3:2214934-2214953 | None:intergenic | 20.0% |
| !! | TTATTCACCAATTTATCAAT+TGG | - | chr5.3:2216038-2216057 | MS.gene024795:intron | 20.0% |
| !! | TTGAAATATTACATCAAACA+TGG | + | chr5.3:2215248-2215267 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAAGAGTATTGTC+TGG | + | chr5.3:2215921-2215940 | None:intergenic | 20.0% |
| !!! | CATTTTGATTATAACTTCTA+TGG | - | chr5.3:2215548-2215567 | MS.gene024795:intron | 20.0% |
| !!! | CTACAGCATATATTTTTAAT+AGG | + | chr5.3:2215601-2215620 | None:intergenic | 20.0% |
| !!! | GATTTACTTGTTTTCTATAA+AGG | - | chr5.3:2215057-2215076 | MS.gene024795:intron | 20.0% |
| !!! | TAAAGAATACAAAACCTTTT+TGG | + | chr5.3:2216836-2216855 | None:intergenic | 20.0% |
| !!! | TTCCGTTTTTTATAGATAAA+AGG | + | chr5.3:2217050-2217069 | None:intergenic | 20.0% |
| !!! | TTTACTTGTTTTCTATAAAG+GGG | - | chr5.3:2215059-2215078 | MS.gene024795:intron | 20.0% |
| !!! | TTTTCATAACAAGTTGTATT+GGG | - | chr5.3:2215830-2215849 | MS.gene024795:intron | 20.0% |
| !!! | TTTTTCATAACAAGTTGTAT+TGG | - | chr5.3:2215829-2215848 | MS.gene024795:intron | 20.0% |
| ! | ATCGAATGAGATAGTTTAAT+CGG | + | chr5.3:2216137-2216156 | None:intergenic | 25.0% |
| ! | GCATACAGTTATATATAAAG+GGG | + | chr5.3:2214933-2214952 | None:intergenic | 25.0% |
| ! | GTCAATCAAAAATATGCTAT+CGG | - | chr5.3:2214610-2214629 | MS.gene024795:CDS | 25.0% |
| ! | GTTAAACTAAGAATTACAGA+GGG | + | chr5.3:2216168-2216187 | None:intergenic | 25.0% |
| ! | TAGATTACCAATCATATTAC+TGG | + | chr5.3:2216376-2216395 | None:intergenic | 25.0% |
| ! | TCAAAACGATTATTTGACAT+TGG | - | chr5.3:2216925-2216944 | MS.gene024795:intron | 25.0% |
| ! | TCAATATTGATGTATACTTG+TGG | - | chr5.3:2217000-2217019 | MS.gene024795:CDS | 25.0% |
| ! | TTAAGATGTTTATGAATCTC+AGG | - | chr5.3:2214757-2214776 | MS.gene024795:CDS | 25.0% |
| ! | TTTATGAGTAGTTATCCATT+AGG | - | chr5.3:2215490-2215509 | MS.gene024795:intron | 25.0% |
| !! | ACATAACACATACTTTGTTT+GGG | + | chr5.3:2215136-2215155 | None:intergenic | 25.0% |
| !! | AGATTGATAGACTCAAATTT+TGG | + | chr5.3:2215209-2215228 | None:intergenic | 25.0% |
| AAATAAATACTCCAAATGGG+AGG | + | chr5.3:2215379-2215398 | None:intergenic | 30.0% | |
| AACTTACAATTCACACAAAC+TGG | + | chr5.3:2215895-2215914 | None:intergenic | 30.0% | |
| AACTTCTATGGTGACAATTA+TGG | - | chr5.3:2215560-2215579 | MS.gene024795:CDS | 30.0% | |
| AATACCCAACAAAAGAAACA+TGG | - | chr5.3:2217246-2217265 | MS.gene024795:CDS | 30.0% | |
| ACTTCTATGGTGACAATTAT+GGG | - | chr5.3:2215561-2215580 | MS.gene024795:CDS | 30.0% | |
| AGATAAAAGGAACCACAAAA+AGG | + | chr5.3:2217037-2217056 | None:intergenic | 30.0% | |
| ATCCAATAAGTTCATCACTT+TGG | + | chr5.3:2214866-2214885 | None:intergenic | 30.0% | |
| ATGTGTTATGTCTATGTTCA+AGG | - | chr5.3:2215145-2215164 | MS.gene024795:intron | 30.0% | |
| ATTACCAATCATATTACTGG+AGG | + | chr5.3:2216373-2216392 | None:intergenic | 30.0% | |
| ATTGTGTGATTCAATTGCAT+TGG | - | chr5.3:2215858-2215877 | MS.gene024795:intron | 30.0% | |
| CAAGCAATACAACTAAGAAA+AGG | + | chr5.3:2215996-2216015 | None:intergenic | 30.0% | |
| CTGTGTTTATGTTGTAAGTT+TGG | - | chr5.3:2215761-2215780 | MS.gene024795:intron | 30.0% | |
| GAAAGATATTGCACTTACAA+TGG | + | chr5.3:2216642-2216661 | None:intergenic | 30.0% | |
| GACATAACACATACTTTGTT+TGG | + | chr5.3:2215137-2215156 | None:intergenic | 30.0% | |
| GGTTAAACTAAGAATTACAG+AGG | + | chr5.3:2216169-2216188 | None:intergenic | 30.0% | |
| GTAATGAAGTTGAACCAAAA+AGG | - | chr5.3:2216819-2216838 | MS.gene024795:intron | 30.0% | |
| GTTTGTGTGAATTGTAAGTT+TGG | - | chr5.3:2215895-2215914 | MS.gene024795:intron | 30.0% | |
| TAAGCTAATGGAACATTATC+AGG | + | chr5.3:2215343-2215362 | None:intergenic | 30.0% | |
| TGTAGTATTACTCCTTAACT+GGG | - | chr5.3:2216764-2216783 | MS.gene024795:intron | 30.0% | |
| TTACCAATCATATTACTGGA+GGG | + | chr5.3:2216372-2216391 | None:intergenic | 30.0% | |
| TTAGAACATACACTAAAGTC+TGG | + | chr5.3:2216275-2216294 | None:intergenic | 30.0% | |
| TTAGTGTATGTTCTAACACT+GGG | - | chr5.3:2216279-2216298 | MS.gene024795:intron | 30.0% | |
| TTGAGTAAGTCATTACCTAA+TGG | + | chr5.3:2216098-2216117 | None:intergenic | 30.0% | |
| TTGGTTCAACTTCATTACTT+TGG | + | chr5.3:2216817-2216836 | None:intergenic | 30.0% | |
| TTGTAGTATTACTCCTTAAC+TGG | - | chr5.3:2216763-2216782 | MS.gene024795:intron | 30.0% | |
| TTTAGTGTATGTTCTAACAC+TGG | - | chr5.3:2216278-2216297 | MS.gene024795:intron | 30.0% | |
| ! | AAGCTGTCTGAAATATGAAA+TGG | + | chr5.3:2217095-2217114 | None:intergenic | 30.0% |
| ! | TCTAAAACGTCAAAATCAGA+CGG | + | chr5.3:2214645-2214664 | None:intergenic | 30.0% |
| !! | ACAACTTGTTATGAAAAACC+AGG | + | chr5.3:2215827-2215846 | None:intergenic | 30.0% |
| !! | AGACTCAAATTTTGGTATCA+AGG | + | chr5.3:2215201-2215220 | None:intergenic | 30.0% |
| !! | GATCCTTTTATTAGTCTGAT+GGG | - | chr5.3:2215299-2215318 | MS.gene024795:CDS | 30.0% |
| !! | TGATCCTTTTATTAGTCTGA+TGG | - | chr5.3:2215298-2215317 | MS.gene024795:CDS | 30.0% |
| !!! | CAGGGCTTTTATTTTATCAA+TGG | - | chr5.3:2216555-2216574 | MS.gene024795:intron | 30.0% |
| !!! | TTAGTTGGGTTTTAAGCTAA+TGG | + | chr5.3:2215355-2215374 | None:intergenic | 30.0% |
| ACTATCTCATTCGATAGAGT+AGG | - | chr5.3:2216142-2216161 | MS.gene024795:intron | 35.0% | |
| ACTTATGATTCACTTATGCG+TGG | - | chr5.3:2215437-2215456 | MS.gene024795:CDS | 35.0% | |
| ATATCAGAATACTCTCTGGT+AGG | - | chr5.3:2215789-2215808 | MS.gene024795:intron | 35.0% | |
| ATCAGTCAGAATATAACAGC+AGG | + | chr5.3:2216676-2216695 | None:intergenic | 35.0% | |
| ATGGTAGATTATTTCCCATC+AGG | - | chr5.3:2214673-2214692 | MS.gene024795:CDS | 35.0% | |
| CAAAACCTATATCCCAGTTA+AGG | + | chr5.3:2216779-2216798 | None:intergenic | 35.0% | |
| CAGAATATCAGAATACTCTC+TGG | - | chr5.3:2215785-2215804 | MS.gene024795:intron | 35.0% | |
| CGTAGGAGTAATACGAATTT+CGG | - | chr5.3:2215967-2215986 | MS.gene024795:intron | 35.0% | |
| GAAACTGAAACCTAGTTAGA+CGG | + | chr5.3:2216965-2216984 | None:intergenic | 35.0% | |
| GTTCCCATCAGACTAATAAA+AGG | + | chr5.3:2215305-2215324 | None:intergenic | 35.0% | |
| TAAGTAGACAGAGAATACGT+AGG | - | chr5.3:2215950-2215969 | MS.gene024795:intron | 35.0% | |
| TATTCGTGCACTACGTAAAT+GGG | - | chr5.3:2216598-2216617 | MS.gene024795:intron | 35.0% | |
| TCAGTCAGAATATAACAGCA+GGG | + | chr5.3:2216675-2216694 | None:intergenic | 35.0% | |
| TGAAACCGGGAAGAAAAAAA+AGG | - | chr5.3:2215717-2215736 | MS.gene024795:intron | 35.0% | |
| TGTTCTTGCAAAAGAAAGTG+AGG | - | chr5.3:2214902-2214921 | MS.gene024795:intron | 35.0% | |
| TTAAGCAGACAGTGTAAACT+AGG | + | chr5.3:2215272-2215291 | None:intergenic | 35.0% | |
| TTACTACTCTGTGGAAAGTA+TGG | - | chr5.3:2215017-2215036 | MS.gene024795:intron | 35.0% | |
| TTACTCCTTAACTGGGATAT+AGG | - | chr5.3:2216771-2216790 | MS.gene024795:intron | 35.0% | |
| TTATTCGTGCACTACGTAAA+TGG | - | chr5.3:2216597-2216616 | MS.gene024795:intron | 35.0% | |
| TTATTGGATTTGTAACAGCG+CGG | - | chr5.3:2214877-2214896 | MS.gene024795:intron | 35.0% | |
| TTTGATTGACTAGACCCTTT+CGG | + | chr5.3:2214600-2214619 | None:intergenic | 35.0% | |
| ! | ACTGCCATGTTTCTTTTGTT+GGG | + | chr5.3:2217253-2217272 | None:intergenic | 35.0% |
| !! | GGTGTTATATCCTAGTCTTT+TGG | - | chr5.3:2216059-2216078 | MS.gene024795:intron | 35.0% |
| !! | TATCAGGTCCATTTAGTTCT+TGG | + | chr5.3:2215327-2215346 | None:intergenic | 35.0% |
| !! | TTGTAGATAGTGGATTTGCT+TGG | - | chr5.3:2216228-2216247 | MS.gene024795:intron | 35.0% |
| !!! | ATCTGCTTTTTTCGAAGATG+TGG | - | chr5.3:2214785-2214804 | MS.gene024795:intron | 35.0% |
| !!! | CACTACCTTTTTTTTCTTCC+CGG | + | chr5.3:2215725-2215744 | None:intergenic | 35.0% |
| AAGCCCTCCAGTAATATGAT+TGG | - | chr5.3:2216366-2216385 | MS.gene024795:intron | 40.0% | |
| AAGTGTGTTAGAAAGCTGCA+GGG | - | chr5.3:2216537-2216556 | MS.gene024795:intron | 40.0% | |
| AAGTTAGGAAGATCTCAAGG+TGG | - | chr5.3:2217182-2217201 | MS.gene024795:intron | 40.0% | |
| ACAAACTGCTACCTATTCCA+AGG | + | chr5.3:2216326-2216345 | None:intergenic | 40.0% | |
| ACCAGCTTCTTCTTTGATAC+GGG | - | chr5.3:2216410-2216429 | MS.gene024795:intron | 40.0% | |
| ACGAAGTTAGGAAGATCTCA+AGG | - | chr5.3:2217179-2217198 | MS.gene024795:intron | 40.0% | |
| AGTTAGGAAGATCTCAAGGT+GGG | - | chr5.3:2217183-2217202 | MS.gene024795:intron | 40.0% | |
| AGTTCATCACTTTGGCCATT+CGG | + | chr5.3:2214858-2214877 | None:intergenic | 40.0% | |
| ATTCGTGCACTACGTAAATG+GGG | - | chr5.3:2216599-2216618 | MS.gene024795:intron | 40.0% | |
| CACCAGCTTCTTCTTTGATA+CGG | - | chr5.3:2216409-2216428 | MS.gene024795:intron | 40.0% | |
| CACTAAAGTCTGGTCAGATT+TGG | + | chr5.3:2216265-2216284 | None:intergenic | 40.0% | |
| GATGGGAACCAAGAACTAAA+TGG | - | chr5.3:2215316-2215335 | MS.gene024795:CDS | 40.0% | |
| GGCCAAAGTGATGAACTTAT+TGG | - | chr5.3:2214861-2214880 | MS.gene024795:intron | 40.0% | |
| GGTAGTGCTGTGTAAAAAAC+TGG | - | chr5.3:2215738-2215757 | MS.gene024795:intron | 40.0% | |
| GTTCTGTTCTTACTACTCTG+TGG | - | chr5.3:2215008-2215027 | MS.gene024795:intron | 40.0% | |
| GTTTACACTGTCTGCTTAAG+TGG | - | chr5.3:2215273-2215292 | MS.gene024795:CDS | 40.0% | |
| TCAAAATCAGACGGTCGTAT+AGG | + | chr5.3:2214636-2214655 | None:intergenic | 40.0% | |
| TCAAGGCAAGAGAAACTTGA+TGG | - | chr5.3:2215162-2215181 | MS.gene024795:intron | 40.0% | |
| TCCAAATGGGAGGTTTAGTT+GGG | + | chr5.3:2215369-2215388 | None:intergenic | 40.0% | |
| TTGAGAGTGAGACAAGAGAA+TGG | + | chr5.3:2217225-2217244 | None:intergenic | 40.0% | |
| TTGATTGACTAGACCCTTTC+GGG | + | chr5.3:2214599-2214618 | None:intergenic | 40.0% | |
| TTTGTAAGCTACGTGAAGAG+TGG | - | chr5.3:2217124-2217143 | MS.gene024795:intron | 40.0% | |
| ! | ACAGAACACGTTCTGTTTTC+AGG | + | chr5.3:2214995-2215014 | None:intergenic | 40.0% |
| ! | GACTGCCATGTTTCTTTTGT+TGG | + | chr5.3:2217254-2217273 | None:intergenic | 40.0% |
| ! | GTATACGCATAGCCTTTTTG+TGG | - | chr5.3:2217022-2217041 | MS.gene024795:CDS | 40.0% |
| ! | TCATCGTGTTGTTGTTCTAC+TGG | - | chr5.3:2214701-2214720 | MS.gene024795:CDS | 40.0% |
| ! | TTCTTGGAGGAGAAAGCATA+TGG | - | chr5.3:2215404-2215423 | MS.gene024795:CDS | 40.0% |
| !!! | GACGTTTTAGAGCGTATTCA+TGG | - | chr5.3:2214654-2214673 | MS.gene024795:CDS | 40.0% |
| AACACGATGATCTCACCTGA+TGG | + | chr5.3:2214691-2214710 | None:intergenic | 45.0% | |
| AACTTCGTTCTTGCACAGCT+TGG | + | chr5.3:2217167-2217186 | None:intergenic | 45.0% | |
| ACACGATGATCTCACCTGAT+GGG | + | chr5.3:2214690-2214709 | None:intergenic | 45.0% | |
| ACCAAGGTTCAAATTCTGGC+TGG | - | chr5.3:2215674-2215693 | MS.gene024795:intron | 45.0% | |
| ACCCAACTAAACCTCCCATT+TGG | - | chr5.3:2215365-2215384 | MS.gene024795:CDS | 45.0% | |
| ACTAATGACGCCGTCTAACT+AGG | - | chr5.3:2216952-2216971 | MS.gene024795:intron | 45.0% | |
| AGCTGTGCAAGAACGAAGTT+AGG | - | chr5.3:2217167-2217186 | MS.gene024795:intron | 45.0% | |
| AGCTTCTTCTTTGATACGGG+AGG | - | chr5.3:2216413-2216432 | MS.gene024795:intron | 45.0% | |
| ATATGCTGTAGAACCAACCG+AGG | - | chr5.3:2215610-2215629 | MS.gene024795:CDS | 45.0% | |
| ATTACCTAATGGTCAGCGCT+TGG | + | chr5.3:2216087-2216106 | None:intergenic | 45.0% | |
| CAAGTGTGTTAGAAAGCTGC+AGG | - | chr5.3:2216536-2216555 | MS.gene024795:intron | 45.0% | |
| CTCCAAATGGGAGGTTTAGT+TGG | + | chr5.3:2215370-2215389 | None:intergenic | 45.0% | |
| GCGAACCAAGGTTCAAATTC+TGG | - | chr5.3:2215670-2215689 | MS.gene024795:intron | 45.0% | |
| GGTAGGAGTCATATAACTCC+TGG | - | chr5.3:2215806-2215825 | MS.gene024795:intron | 45.0% | |
| GTAGTGGTGTCTGAAAGTAG+TGG | - | chr5.3:2215523-2215542 | MS.gene024795:intron | 45.0% | |
| GTTGATCTTAGTCGACCGAA+TGG | - | chr5.3:2214840-2214859 | MS.gene024795:intron | 45.0% | |
| TCCCGGTTTCACACAAAAGT+GGG | + | chr5.3:2215708-2215727 | None:intergenic | 45.0% | |
| TCCCGTATCAAAGAAGAAGC+TGG | + | chr5.3:2216414-2216433 | None:intergenic | 45.0% | |
| TCGAAGATGTGGTGAACAGA+CGG | - | chr5.3:2214796-2214815 | MS.gene024795:intron | 45.0% | |
| TGTTCTAACACTGGGAGTAG+TGG | - | chr5.3:2216287-2216306 | MS.gene024795:intron | 45.0% | |
| TTCCCGGTTTCACACAAAAG+TGG | + | chr5.3:2215709-2215728 | None:intergenic | 45.0% | |
| TTCGTGCACTACGTAAATGG+GGG | - | chr5.3:2216600-2216619 | MS.gene024795:intron | 45.0% | |
| ! | AACCTTGGTTCGCTATGTTG+TGG | + | chr5.3:2215663-2215682 | None:intergenic | 45.0% |
| ! | ACCTTGGTTCGCTATGTTGT+GGG | + | chr5.3:2215662-2215681 | None:intergenic | 45.0% |
| ! | CAAAGAAGAAGCTGGTGATG+AGG | + | chr5.3:2216406-2216425 | None:intergenic | 45.0% |
| ! | CCAAGGTTCAAATTCTGGCT+GGG | - | chr5.3:2215675-2215694 | MS.gene024795:intron | 45.0% |
| ! | CTACGTGAAGAGTGGCTTTA+AGG | - | chr5.3:2217132-2217151 | MS.gene024795:intron | 45.0% |
| ! | GGAGTAGTGGAAGCATATAG+GGG | - | chr5.3:2216300-2216319 | MS.gene024795:intron | 45.0% |
| ! | GGGAGTAGTGGAAGCATATA+GGG | - | chr5.3:2216299-2216318 | MS.gene024795:intron | 45.0% |
| ! | TGGGAGTAGTGGAAGCATAT+AGG | - | chr5.3:2216298-2216317 | MS.gene024795:intron | 45.0% |
| AACATGGCAGTCGAGTCTAC+TGG | - | chr5.3:2217262-2217281 | MS.gene024795:CDS | 50.0% | |
| ACAGACGGGATATTGTGTCG+TGG | - | chr5.3:2214811-2214830 | MS.gene024795:intron | 50.0% | |
| AGACGGGATATTGTGTCGTG+GGG | - | chr5.3:2214813-2214832 | MS.gene024795:intron | 50.0% | |
| CAGACGGGATATTGTGTCGT+GGG | - | chr5.3:2214812-2214831 | MS.gene024795:intron | 50.0% | |
| CCCAGCCAGAATTTGAACCT+TGG | + | chr5.3:2215678-2215697 | None:intergenic | 50.0% | |
| CGAAGATGTGGTGAACAGAC+GGG | - | chr5.3:2214797-2214816 | MS.gene024795:intron | 50.0% | |
| CTGTAGAACCAACCGAGGTT+GGG | - | chr5.3:2215615-2215634 | MS.gene024795:CDS | 50.0% | |
| GCATATAGGGGCCTTGGAAT+AGG | - | chr5.3:2216312-2216331 | MS.gene024795:intron | 50.0% | |
| TCACGTGCAAGTAAACCGCT+CGG | + | chr5.3:2216470-2216489 | None:intergenic | 50.0% | |
| TCCCACAACATAGCGAACCA+AGG | - | chr5.3:2215658-2215677 | MS.gene024795:intron | 50.0% | |
| TGCACTACGTAAATGGGGGA+CGG | - | chr5.3:2216604-2216623 | MS.gene024795:intron | 50.0% | |
| TGCACTTACAATGGCGAGCA+AGG | + | chr5.3:2216633-2216652 | None:intergenic | 50.0% | |
| ! | GTTCAAATTCTGGCTGGGAG+TGG | - | chr5.3:2215680-2215699 | MS.gene024795:intron | 50.0% |
| !! | CGCCCACTTTTGTGTGAAAC+CGG | - | chr5.3:2215703-2215722 | MS.gene024795:intron | 50.0% |
| !! | GAAGAGTGGCTTTAAGGCAG+TGG | - | chr5.3:2217138-2217157 | MS.gene024795:intron | 50.0% |
| !! | GCCCACTTTTGTGTGAAACC+GGG | - | chr5.3:2215704-2215723 | MS.gene024795:intron | 50.0% |
| AAGCATTCCAACGTGCCGAG+CGG | - | chr5.3:2216452-2216471 | MS.gene024795:intron | 55.0% | |
| AAGTAAACCGCTCGGCACGT+TGG | + | chr5.3:2216462-2216481 | None:intergenic | 55.0% | |
| GCGCTTGGCACCAAAAGACT+AGG | + | chr5.3:2216072-2216091 | None:intergenic | 55.0% | |
| GCTGTAGAACCAACCGAGGT+TGG | - | chr5.3:2215614-2215633 | MS.gene024795:CDS | 55.0% | |
| ! | GTGGAAGCATATAGGGGCCT+TGG | - | chr5.3:2216306-2216325 | MS.gene024795:intron | 55.0% |
| CCAACCGAGGTTGGGTCTAG+CGG | - | chr5.3:2215623-2215642 | MS.gene024795:CDS | 60.0% | |
| CGAGGTTGGGTCTAGCGGAA+CGG | - | chr5.3:2215628-2215647 | MS.gene024795:CDS | 60.0% | |
| CGTTCCGCTAGACCCAACCT+CGG | + | chr5.3:2215630-2215649 | None:intergenic | 60.0% | |
| GAGGTTGGGTCTAGCGGAAC+GGG | - | chr5.3:2215629-2215648 | MS.gene024795:CDS | 60.0% | |
| !! | GGTGCCAAGCGCTGACCATT+AGG | - | chr5.3:2216080-2216099 | MS.gene024795:intron | 60.0% |
| CCGCTAGACCCAACCTCGGT+TGG | + | chr5.3:2215626-2215645 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 2214588 | 2217300 | 2214588 | ID=MS.gene024795 |
| chr5.3 | mRNA | 2214588 | 2217300 | 2214588 | ID=MS.gene024795.t1;Parent=MS.gene024795 |
| chr5.3 | exon | 2217194 | 2217300 | 2217194 | ID=MS.gene024795.t1.exon1;Parent=MS.gene024795.t1 |
| chr5.3 | CDS | 2217194 | 2217300 | 2217194 | ID=cds.MS.gene024795.t1;Parent=MS.gene024795.t1 |
| chr5.3 | exon | 2216965 | 2217109 | 2216965 | ID=MS.gene024795.t1.exon2;Parent=MS.gene024795.t1 |
| chr5.3 | CDS | 2216965 | 2217109 | 2216965 | ID=cds.MS.gene024795.t1;Parent=MS.gene024795.t1 |
| chr5.3 | exon | 2215555 | 2215654 | 2215555 | ID=MS.gene024795.t1.exon3;Parent=MS.gene024795.t1 |
| chr5.3 | CDS | 2215555 | 2215654 | 2215555 | ID=cds.MS.gene024795.t1;Parent=MS.gene024795.t1 |
| chr5.3 | exon | 2215245 | 2215473 | 2215245 | ID=MS.gene024795.t1.exon4;Parent=MS.gene024795.t1 |
| chr5.3 | CDS | 2215245 | 2215473 | 2215245 | ID=cds.MS.gene024795.t1;Parent=MS.gene024795.t1 |
| chr5.3 | exon | 2214588 | 2214780 | 2214588 | ID=MS.gene024795.t1.exon5;Parent=MS.gene024795.t1 |
| chr5.3 | CDS | 2214588 | 2214780 | 2214588 | ID=cds.MS.gene024795.t1;Parent=MS.gene024795.t1 |
| Gene Sequence |
| Protein sequence |
