AlfalfaGEDB | MS.gene024910

M. sativa cultivar XinJiangDaYe / MS.gene024910

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0008289 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF01852.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024910.t1	XP_003610661.2	89.8	725	70	2	1	725	1	721	0.00E+00	1199.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024910.t1	Q93V99	52.0	711	314	10	24	720	38	735	3.5e-193	676.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024910.t1	G7K111	89.8	725	70	2	1	725	1	721	0.0e+00	1199.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene024910.t1	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024910.t1	MTR_5g005600	93.931	725	40	2	1	725	1	721	0.0	1370
MS.gene024910.t1	MTR_2g088470	52.632	703	307	11	26	720	48	732	0.0	698
MS.gene024910.t1	MTR_4g047800	51.920	703	309	11	30	720	44	729	0.0	686
MS.gene024910.t1	MTR_8g432540	42.992	742	375	14	14	720	78	806	0.0	582
MS.gene024910.t1	MTR_7g076080	42.877	709	379	12	30	720	74	774	0.0	567
MS.gene024910.t1	MTR_1g101280	39.210	709	387	13	44	720	54	750	8.29e-175	519
MS.gene024910.t1	MTR_2g101720	39.067	686	364	14	50	720	143	789	2.41e-158	478
MS.gene024910.t1	MTR_0198s0030	38.008	713	380	14	50	720	59	751	4.24e-156	471
MS.gene024910.t1	MTR_6g477820	36.402	717	392	16	46	720	29	723	4.23e-148	449
MS.gene024910.t1	MTR_5g029320	35.256	763	432	20	1	720	35	778	9.21e-144	440

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene024910.t1	AT4G21750	54.369	721	281	13	39	724	54	761	751
MS.gene024910.t1	AT4G21750	54.369	721	281	13	39	724	54	761	751
MS.gene024910.t1	AT4G21750	54.369	721	281	13	39	724	54	761	751
MS.gene024910.t1	AT4G21750	54.369	721	281	13	39	724	54	761	751
MS.gene024910.t1	AT4G04890	55.108	695	286	10	39	720	54	735	749
MS.gene024910.t1	AT4G04890	55.108	695	286	10	39	720	54	735	749
MS.gene024910.t1	AT1G05230	50.215	697	313	10	30	720	48	716	675
MS.gene024910.t1	AT1G05230	50.215	697	313	10	30	720	48	716	675
MS.gene024910.t1	AT1G05230	50.215	697	313	10	30	720	48	716	675
MS.gene024910.t1	AT1G05230	50.215	697	313	10	30	720	48	716	675

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Find 186 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCAGTGATGCCTAA+TGG	0.465524	5.2:+762528	MS.gene024910:CDS
AAACGGACCGGAGGTTGTAA+TGG	0.547300	5.2:+761290	MS.gene024910:CDS
AAACGGCCACCAACGTTCCA+CGG	0.489293	5.2:+761059	MS.gene024910:CDS
AAAGGTACCTGGAAACGGAC+CGG	0.603908	5.2:+761278	MS.gene024910:CDS
AAATCAAACACCCTCCTTGG+AGG	0.534430	5.2:-761402	None:intergenic
AAATGTAGAAGTTGATGATC+AGG	0.509315	5.2:+760934	MS.gene024910:CDS
AAATTCAGAGCAGAGTGATG+TGG	0.672413	5.2:+762197	MS.gene024910:CDS
AACACCCTCCTTGGAGGAAC+TGG	0.338188	5.2:-761396	None:intergenic
AACCAAAACTTGATTTGCGT+TGG	0.487544	5.2:-758697	None:intergenic
AACGGCCACCAACGTTCCAC+GGG	0.530317	5.2:+761060	MS.gene024910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGATGAAATGGATACGT+AGG	+	chr5.2:758498-758517	MS.gene024910:intron	30.0%
ACTTACAGTGATACGAAATA+AGG	-	chr5.2:761633-761652	None:intergenic	30.0%
AGAACATGTATCATCAGAAT+AGG	+	chr5.2:758359-758378	MS.gene024910:CDS	30.0%
ATGAAGTTAATAGATACAGG+GGG	+	chr5.2:759409-759428	MS.gene024910:CDS	30.0%
GAGATGAAGTTAATAGATAC+AGG	+	chr5.2:759406-759425	MS.gene024910:CDS	30.0%
GATGAAGTTAATAGATACAG+GGG	+	chr5.2:759408-759427	MS.gene024910:CDS	30.0%
GTTTACAGTATCTCACAAAA+TGG	-	chr5.2:760625-760644	None:intergenic	30.0%
TCAGCAACAAATTGATGAAA+TGG	+	chr5.2:758489-758508	MS.gene024910:CDS	30.0%
AATCTCAGTGACATAATTGG+TGG	-	chr5.2:759997-760016	None:intergenic	35.0%
ACAATGCATGAAATCCTGAA+TGG	+	chr5.2:762288-762307	MS.gene024910:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	758328	762557	758328	ID=MS.gene024910
chr5.2	mRNA	758328	762557	758328	ID=MS.gene024910.t1;Parent=MS.gene024910
chr5.2	exon	758328	758515	758328	ID=MS.gene024910.t1.exon1;Parent=MS.gene024910.t1
chr5.2	CDS	758328	758515	758328	ID=cds.MS.gene024910.t1;Parent=MS.gene024910.t1
chr5.2	exon	758627	758744	758627	ID=MS.gene024910.t1.exon2;Parent=MS.gene024910.t1
chr5.2	CDS	758627	758744	758627	ID=cds.MS.gene024910.t1;Parent=MS.gene024910.t1
chr5.2	exon	759351	759536	759351	ID=MS.gene024910.t1.exon3;Parent=MS.gene024910.t1
chr5.2	CDS	759351	759536	759351	ID=cds.MS.gene024910.t1;Parent=MS.gene024910.t1
chr5.2	exon	759708	760154	759708	ID=MS.gene024910.t1.exon4;Parent=MS.gene024910.t1
chr5.2	CDS	759708	760154	759708	ID=cds.MS.gene024910.t1;Parent=MS.gene024910.t1
chr5.2	exon	760367	760468	760367	ID=MS.gene024910.t1.exon5;Parent=MS.gene024910.t1
chr5.2	CDS	760367	760468	760367	ID=cds.MS.gene024910.t1;Parent=MS.gene024910.t1
chr5.2	exon	760572	760796	760572	ID=MS.gene024910.t1.exon6;Parent=MS.gene024910.t1
chr5.2	CDS	760572	760796	760572	ID=cds.MS.gene024910.t1;Parent=MS.gene024910.t1
chr5.2	exon	760920	761091	760920	ID=MS.gene024910.t1.exon7;Parent=MS.gene024910.t1
chr5.2	CDS	760920	761091	760920	ID=cds.MS.gene024910.t1;Parent=MS.gene024910.t1
chr5.2	exon	761175	761452	761175	ID=MS.gene024910.t1.exon8;Parent=MS.gene024910.t1
chr5.2	CDS	761175	761452	761175	ID=cds.MS.gene024910.t1;Parent=MS.gene024910.t1
chr5.2	exon	761551	761646	761551	ID=MS.gene024910.t1.exon9;Parent=MS.gene024910.t1
chr5.2	CDS	761551	761646	761551	ID=cds.MS.gene024910.t1;Parent=MS.gene024910.t1
chr5.2	exon	762192	762557	762192	ID=MS.gene024910.t1.exon10;Parent=MS.gene024910.t1
chr5.2	CDS	762192	762557	762192	ID=cds.MS.gene024910.t1;Parent=MS.gene024910.t1

Gene Sequence

>MS.gene024910

ATGGTTAATACTCCACATCAAAATCACATCAAGAACATGTATCATCAGAATAGGATGACAAGAACAAGAGAAGAAGCAAACCAAATGAACATGGAGGCTACTTCAAGTGATGACCAACAACACAACCAACGTTCCAGAAAAAGGACCTATCGCCGCCACACTCAGCAACAAATTGATGAAATGGATACGTAGGAACCATTTTTATATATTTTATCTGAATGTGATCATATATAATATATCTTTACTTGCTCTATATTTTTGGTATATTAATTTTTTGAACTTGGTTTTGTCATCATCAGTTTCTTCAAGCAGTGTCCTAACCCTAATGATGCTCAGAGAAGAGAGCTGAGCCTTCGGACTGGGTTAGACCCAACGCAAATCAAGTTTTGGTTTCAGAACAGGCGCACTTCGCTGAAGGTAATTTAGACCAACTGCATGTAATTTTTTTTTTGTTGCAAGCATTGTGACCGTTGCCATGCATATTGCTGTCGTTGTGGTGTAAATTTAATTTTTATTAGCATCAAATATTATAAACCATTATTATCAACTCTTACATATATTTCATTATCAACTCTGTTACTTTTACATATCCTCTAAATTTATCACCTATGTTACAAAGAAAAATAATTTGTTTGATGACTAAATAGTCTGTTGCGGCCTAATGCAGTTTCATGTTATGCGATGCAGCATGACAATGCAATTTTTACTGTTATTTACATTGCACTTCAATGGCGGCCTGATGCGGTTACAAACATTGCCGCAACCGCAATATTATGATTGCATCATGATCCCAAAATTTGAAACACTAATAATTAATATATATATATATATATATATATATATATATATATATATATATATACACACACACACACACACACACACACACACACACACACTTGCTTGCTTGCTAGAGAATAGATATTTGAAATTTAAGTTATGAACTTTATTAATTAATTAATTAATTAAATGCTTCTTTTCGGCGGTGATCTCATAATATATAACTAATTATATTTTATATAGGTTCAAACTGATAGGGAAGAGAATGAGCTATTAAAGATTGAGAATGAAAAACTTCGAGATGAAGTTAATAGATACAGGGGGGCAATTGTTACCACATGCAACGTATGTGGAAGTTCCACTACCGCTGGGGAAATGTCACATGACGATCAGCAGCTAAGACTGGAGAATGCTCTCTTAAGGAAAGAGGTACCTCATCGTTTGTTACGATTTTCAAAATAAATATGTGCTGAAAAACAAATTAAAATTATGATCGAACAATTATGATTAACTTTTATCGTGTAAGTACATTAAATTAAATCATTCTTAATTATTCGCAACAACTTTAATTGTTTCATTGTTTGTAAAAAAAACCGCCAGCTTGAAAGGTTTATGGGTGAGACGCCAACAGATCCTGCAGACTCTCGTGCCAATATAACATCATCCAACAATAGCACTCATGTTATTTCACGCTCTGCTGATTTTGGAGTTGCTGGTGGTAACAATGGAGCACACCACCGCATGGTAGGAGAGGCTTTCACTGTTGGTAGCTCCTCAGTACAGATTAAGGGTCTTAATGAGAAGCAAAGGATTGTAGAGCTTGCTGTTGTTGGAATGGCTGAACTGACCAAACTGGCTAGGACATATGGACCCCCTCTTTGGCTTCCCACCAATTATGTCACTGAGATTCTCAATGGAGAGGAATACATGAAGTATTTCCCAAGGGCTAATGGTCCCAACACATCGGGATTAAAGCTTGAGGGTTCGAAAGAATCCGTGGTGGTCATGATTAATGCTCCTGATCTTGTAGATATCCTCATGGATGTGGTGAGTCATTAATGTTCATGCTACCAACACTTTCTAAGCCTTATTATTTGCATTAATGTTTCAAAAACTTGGACCAAACCATCCGGTTCAATCAGGTTGAACCAAGTATTTTTAGAATATTATTCTTTTATTTTAAAAAAGAACATTGGTTTACATGCATACTAAAAATATATAAAATTTCCCTCCATTTATATTATTAAATTTGTTTTCAGAATCAATGGTCAAATATGTTTTGCGGCATTGTTTCTAAAGCAGCAACACTTGAAGTCCTTTCAACTGGAGTGGGAGGTAACTACGATGGAGCCTTGCAAGTGGTAAGTACTAATTTAATTTCTTATACTTAATTTTAAAGAATTAATTTTAATATGTATTTCTTCTAATTAATCTTTTTTTTTTTTTTTAAATGTTATTTTTTAGATGACAGCTGAATTTCAAGTCCCCTCCCCACATGTTCCTACTCGTCAAAACCATTTTGTGAGATACTGTAAACTGCATCCAGATGGAATATGGGTAGTGGCTGATGTGTCCTTGCATCTGTTAAATGCAACATCTGCTAGTAGTAGTAGTAGTAGTACTGCTTCAAGAACCAACAGAAGACCCTCTGGTTGTTTGATTGAGACACTCCCAAATGGTCTCACTAAGGTCTTACCACATTTCACCTTCACCTAAAATAATATTAATAATAGTTTATTATGTTGGATTATTTTAATGTGGATTAGTATAGTTAATTTTATCAATTATTTGTTGTCTTGTTTTTTTAAACAGGTTACATGGATTGAAAATGTAGAAGTTGATGATCAGGTGGTGCAAAATATATATAAACCTCTAGTTAATTCTGGACTTGCTTTTGGAGCTAAACGCTGGGTAGCTACATTACATCGACAATCTGATCGTCTTGTTTTTAAAACGGCCACCAACGTTCCACGGGAACATCATGGTATATAACCTTTTTTTTTTTTAAAAAAAAATATATATATAAATGACAGTTATATATTTATGTATAACATTATATATGTACAGTGAGATTGACTCCGGAGGGAAAGAAAAGTATATTGAATCTTGCGGAAAGGTTGGTAGCTAGCTTTAGTACAAGTATTGGTTCTTCTACAACACATGCTTGGACAAAGGTACCTGGAAACGGACCGGAGGTTGTAATGGTCATGACGAAAAGATATATCGATGAATCGAGCATTGACAAACCCGTCAGTGTTGTGCTAAGTGCTGCTACTTCTTTTTGGCTTCCAGTTCCTCCAAGGAGGGTGTTTGATTTTCTTCGAGATCAAAACACAAGAAAACATGTATGTATCTACTAATATATGTCTAAAGTTCTGTAATGTGTTATTAGCACAATTAATTAATTAATTGTTGAAGCTTACATATTTAATTGAATTTACAGTGGGATATTCTCTCCGCCGGCGGTATAGTTCATGAATTGGCTCACATTTCAAATGGTCGTGATTCTGGCAACTATGTCTCCTTATTTCGTATCACTGTAAGTTATGTAAAATTAAAATTGGTATAGTATCAGGGGCGGATCCAGCTATGCTTGAGGGTGTGCACCTGCACACCCTGGATCATTGTTATTTGCACCAGTACTCTTAGTTTTATTGCTATATGCACACCCTGAGATTTTAGTTTTGCACCTCCTCACAAGACTATGTCAGTTTAGCGTGACTGATATTAACTGGTGTGTTTAGTGCTACTAATTTTCCCATGAATGACGTGTTTAATGCCGTTAATTTTCCCATAAAAATGACTTTTAATGTTATTTACAGTAATTGGTAGACTTTTAATTTTCCATAAATGTATTAAGGTTCATACATATTTATTAAATACTAAAAAATATGACTAGATCAAATTTTGGTAACCATATATACACATATATAAAAATTTATAATTTTAATATTAATATTAATTATTAAAATTAAAAATTTTGCACCCCCTGACTCAGGGTCCTGGATACGCCACTGTATAGTATATTAGTGATTAGAACACATATTCTAACGTTCTCTTTCGCTAAATATATTTTTCCTGTAGAGTGAAAATTCAGAGCAGAGTGATGTGGTAGTACTGCAAGAGAATTGCACTGATGTAACTGGGTCATATGTAGTATATGCGCCTGTGCAAATACCTACAATGCATGAAATCCTGAATGGCGGCGACTCAAGTCGTCTTACTCTGCTTCCTTCCGGATTCGCTATTTTTCCAGATGGGTGTATAACAAATGCAGGACCAATTATGAATGTCGGATCTGGAGGGTCTCTTGTCACAGTTGCATTTCAGATTATAGTTGATTCTATTCCACATGCAAGGCTAGCTCTGGGTTCAATCACCACTGTTAACACTTTGATCAGGAACACTGTGGAAAGGATTAAAACTGCAGTGATGCCTAATGGCATCTAA

Protein sequence

>MS.gene024910.t1

MVNTPHQNHIKNMYHQNRMTRTREEANQMNMEATSSDDQQHNQRSRKRTYRRHTQQQIDEMDTFFKQCPNPNDAQRRELSLRTGLDPTQIKFWFQNRRTSLKVQTDREENELLKIENEKLRDEVNRYRGAIVTTCNVCGSSTTAGEMSHDDQQLRLENALLRKELERFMGETPTDPADSRANITSSNNSTHVISRSADFGVAGGNNGAHHRMVGEAFTVGSSSVQIKGLNEKQRIVELAVVGMAELTKLARTYGPPLWLPTNYVTEILNGEEYMKYFPRANGPNTSGLKLEGSKESVVVMINAPDLVDILMDVNQWSNMFCGIVSKAATLEVLSTGVGGNYDGALQVMTAEFQVPSPHVPTRQNHFVRYCKLHPDGIWVVADVSLHLLNATSASSSSSSTASRTNRRPSGCLIETLPNGLTKVTWIENVEVDDQVVQNIYKPLVNSGLAFGAKRWVATLHRQSDRLVFKTATNVPREHHVRLTPEGKKSILNLAERLVASFSTSIGSSTTHAWTKVPGNGPEVVMVMTKRYIDESSIDKPVSVVLSAATSFWLPVPPRRVFDFLRDQNTRKHWDILSAGGIVHELAHISNGRDSGNYVSLFRITSENSEQSDVVVLQENCTDVTGSYVVYAPVQIPTMHEILNGGDSSRLTLLPSGFAIFPDGCITNAGPIMNVGSGGSLVTVAFQIIVDSIPHARLALGSITTVNTLIRNTVERIKTAVMPNGI