Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025119.t1 | XP_024631492.1 | 95.3 | 530 | 22 | 2 | 1 | 530 | 1 | 527 | 1.90E-272 | 948 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025119.t1 | Q9LTS4 | 36.2 | 511 | 234 | 16 | 44 | 522 | 14 | 464 | 1.4e-53 | 212.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025119.t1 | G7IIK8 | 94.3 | 530 | 22 | 3 | 1 | 530 | 1 | 522 | 6.0e-268 | 932.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene025119.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025119.t1 | MTR_2g039620 | 94.340 | 530 | 22 | 3 | 1 | 530 | 1 | 522 | 0.0 | 939 |
MS.gene025119.t1 | MTR_2g039620 | 95.204 | 417 | 17 | 2 | 114 | 530 | 4 | 417 | 0.0 | 755 |
MS.gene025119.t1 | MTR_5g014600 | 27.667 | 300 | 171 | 11 | 247 | 518 | 48 | 329 | 7.12e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025119.t1 | AT5G56960 | 39.299 | 542 | 267 | 16 | 12 | 522 | 13 | 523 | 3.81e-89 | 283 |
MS.gene025119.t1 | AT5G56960 | 35.433 | 508 | 242 | 15 | 44 | 522 | 14 | 464 | 2.79e-60 | 206 |
Find 94 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATGTATTGATTCGATTAT+TGG | 0.081677 | 2.4:-50360900 | MS.gene025119:CDS |
CTAAAATTTGACCCTATATT+AGG | 0.183433 | 2.4:+50361854 | None:intergenic |
ATCACGTGAGTCATATATTT+TGG | 0.219439 | 2.4:+50358795 | None:intergenic |
GATGCTCTCACATTTGTCTT+TGG | 0.245611 | 2.4:-50363631 | MS.gene025119:CDS |
GAATAGTCGTTTGTCCTTCT+TGG | 0.247039 | 2.4:-50363462 | MS.gene025119:intron |
AAATATATACTTTGATAATA+TGG | 0.249981 | 2.4:+50363598 | None:intergenic |
CAATTACCAAGTTCTTCTTT+AGG | 0.263208 | 2.4:-50363413 | MS.gene025119:CDS |
AATTACCAAGTTCTTCTTTA+GGG | 0.266258 | 2.4:-50363412 | MS.gene025119:CDS |
CCACTCTTCTCACTGCTTCC+TGG | 0.304864 | 2.4:+50358846 | None:intergenic |
CTTCCAAATGCACTAGCTTC+TGG | 0.330949 | 2.4:+50361896 | None:intergenic |
TACTTCATCAAATAACCTTC+AGG | 0.345353 | 2.4:-50360799 | MS.gene025119:CDS |
CATGATAAAAGTCCTAATAT+AGG | 0.347025 | 2.4:-50361866 | MS.gene025119:CDS |
CTCCTTAGCTGTTATCAGTA+TGG | 0.357487 | 2.4:+50361159 | None:intergenic |
AATATGAGAGATGAGTATTC+AGG | 0.359714 | 2.4:+50362178 | None:intergenic |
CATCCAGAAGCTAGTGCATT+TGG | 0.365951 | 2.4:-50361899 | MS.gene025119:CDS |
ATGGGACGAGGAAGCCTTCC+AGG | 0.369330 | 2.4:-50358864 | MS.gene025119:CDS |
ATGATAAAAGTCCTAATATA+GGG | 0.380695 | 2.4:-50361865 | MS.gene025119:CDS |
GGAGACATTGAGATCTTTGA+TGG | 0.383429 | 2.4:-50361140 | MS.gene025119:CDS |
AGAATTGATGTCACAACAAT+TGG | 0.385231 | 2.4:-50361086 | MS.gene025119:CDS |
GGTAGTAGTGTGTTTGAAAC+AGG | 0.397618 | 2.4:+50362070 | None:intergenic |
TCATTCTCAGTGTGTGTTGT+AGG | 0.401735 | 2.4:+50362001 | None:intergenic |
ACATGTCAACTTGGTTTCAA+TGG | 0.402871 | 2.4:-50360858 | MS.gene025119:CDS |
CTACTTAGAGCTGCAACAAT+TGG | 0.412913 | 2.4:-50362976 | MS.gene025119:CDS |
ATCAAATAACCTTCAGGCTA+AGG | 0.429025 | 2.4:-50360793 | MS.gene025119:CDS |
AATTCAGTTCTGACGGCTAC+AGG | 0.433952 | 2.4:+50363680 | None:intergenic |
GAATATTTATTCCTCCAAGT+TGG | 0.443689 | 2.4:+50362104 | None:intergenic |
GGGGTGTAGATAGAACATTT+TGG | 0.464905 | 2.4:+50361960 | None:intergenic |
AATATTTATTCCTCCAAGTT+GGG | 0.465125 | 2.4:+50362105 | None:intergenic |
GGTAATTGTTGAAGTTGAAA+AGG | 0.465384 | 2.4:+50362049 | None:intergenic |
TCACCTGATCCTACCCAACT+TGG | 0.482330 | 2.4:-50362118 | MS.gene025119:CDS |
CAATTGTTGCAGCTCTAAGT+AGG | 0.485660 | 2.4:+50362977 | None:intergenic |
CGTTCTCTAATGCAATCTCT+TGG | 0.486499 | 2.4:-50363653 | MS.gene025119:CDS |
AATTGTGTTGGTGTGATTTG+AGG | 0.486696 | 2.4:+50362028 | None:intergenic |
CCTCCAAGTTGGGTAGGATC+AGG | 0.489579 | 2.4:+50362115 | None:intergenic |
AGTCGTTTGTCCTTCTTGGA+TGG | 0.492248 | 2.4:-50363458 | MS.gene025119:CDS |
GTTGTAGGGAATAATTGTGT+TGG | 0.494305 | 2.4:+50362016 | None:intergenic |
AACAAAGGAGAAATTGAGCT+TGG | 0.495316 | 2.4:-50362670 | MS.gene025119:CDS |
CATTCTCAGTGTGTGTTGTA+GGG | 0.498942 | 2.4:+50362002 | None:intergenic |
AATTGAGGTGGAGAAGTTCC+AGG | 0.500124 | 2.4:+50362142 | None:intergenic |
TCTTCTCACTGCTTCCTGGA+AGG | 0.503286 | 2.4:+50358850 | None:intergenic |
TTTACAGGAAGCAAGGATCA+AGG | 0.513199 | 2.4:-50362825 | MS.gene025119:intron |
GTGTTTGAAACAGGTCTCAT+TGG | 0.519603 | 2.4:+50362079 | None:intergenic |
AGAGATGAGTATTCAGGAGT+AGG | 0.522961 | 2.4:+50362184 | None:intergenic |
AGAAGATGAATCAATGGTAG+TGG | 0.525040 | 2.4:-50360960 | MS.gene025119:CDS |
TTCATCAGAAGATGAATCAA+TGG | 0.532346 | 2.4:-50360966 | MS.gene025119:CDS |
CTGAGTAATCCTTAGCCTGA+AGG | 0.534544 | 2.4:+50360784 | None:intergenic |
TCATGATCAACATGTCAACT+TGG | 0.538074 | 2.4:-50360867 | MS.gene025119:CDS |
TTTATTCCTCCAAGTTGGGT+AGG | 0.547865 | 2.4:+50362109 | None:intergenic |
TGCACAGGCGGATATTCAAA+CGG | 0.552403 | 2.4:-50362317 | MS.gene025119:intron |
TGATGAAGTAAATCATTCCC+TGG | 0.552419 | 2.4:+50360812 | None:intergenic |
CCTGATCCTACCCAACTTGG+AGG | 0.553608 | 2.4:-50362115 | MS.gene025119:CDS |
GTTTATGCAGATAAGTGAAT+GGG | 0.559981 | 2.4:-50358882 | MS.gene025119:intron |
TTCCATACTGATAACAGCTA+AGG | 0.563069 | 2.4:-50361161 | MS.gene025119:CDS |
GAGGTTGATGTTGATGAGAA+GGG | 0.565051 | 2.4:+50361939 | None:intergenic |
AATTGTTGCAGCTCTAAGTA+GGG | 0.570276 | 2.4:+50362978 | None:intergenic |
TTTGAAACAGGTCTCATTGG+TGG | 0.575275 | 2.4:+50362082 | None:intergenic |
TGAGGTTGATGTTGATGAGA+AGG | 0.576774 | 2.4:+50361938 | None:intergenic |
ACACTCCCTAAAGAAGAACT+TGG | 0.577549 | 2.4:+50363407 | None:intergenic |
ACAAATACAAATCATGCACC+AGG | 0.579495 | 2.4:-50360830 | MS.gene025119:CDS |
ATGAGATCACTATCAACAGC+AGG | 0.579733 | 2.4:-50362211 | MS.gene025119:CDS |
CTTAGAGCATTACTTCCTCA+AGG | 0.580881 | 2.4:-50361671 | MS.gene025119:CDS |
GGTTTATGCAGATAAGTGAA+TGG | 0.584114 | 2.4:-50358883 | MS.gene025119:intron |
CAGTTCTGACGGCTACAGGA+AGG | 0.586512 | 2.4:+50363684 | None:intergenic |
CTTCAGGCTAAGGATTACTC+AGG | 0.589180 | 2.4:-50360783 | MS.gene025119:intron |
ATGATGAAGTTGATTACTCG+AGG | 0.589833 | 2.4:+50361745 | None:intergenic |
GACTTGCAAGTGAACGTGAT+GGG | 0.599132 | 2.4:-50360938 | MS.gene025119:CDS |
CAAGAGATTGCATTAGAGAA+CGG | 0.600137 | 2.4:+50363654 | None:intergenic |
GTACGTACCTTTGTTCCTTG+AGG | 0.603059 | 2.4:+50361656 | None:intergenic |
AGTTCTGACGGCTACAGGAA+GGG | 0.603804 | 2.4:+50363685 | None:intergenic |
AGGTTGATGTTGATGAGAAG+GGG | 0.605846 | 2.4:+50361940 | None:intergenic |
ACGGATAAATTCAGTTCTGA+CGG | 0.607682 | 2.4:+50363673 | None:intergenic |
ATTGTAGAAACCATCCAAGA+AGG | 0.610273 | 2.4:+50363448 | None:intergenic |
ATTGAAGATGAAGATGATGA+AGG | 0.610501 | 2.4:+50362232 | None:intergenic |
TCAACCTCAGCAAAATTATG+TGG | 0.614391 | 2.4:-50361924 | MS.gene025119:CDS |
GTAGGATCAGGTGAAAATTG+AGG | 0.615518 | 2.4:+50362127 | None:intergenic |
TGATTCCTAAAAGCTAGTCC+AGG | 0.617478 | 2.4:+50363005 | None:intergenic |
TGATGAAGTTGATTACTCGA+GGG | 0.623889 | 2.4:+50361746 | None:intergenic |
ATTACTTCCTCAAGGAACAA+AGG | 0.632442 | 2.4:-50361663 | MS.gene025119:intron |
CAGAAGCTAGTGCATTTGGA+AGG | 0.633413 | 2.4:-50361895 | MS.gene025119:CDS |
GCAGATAAGTGAATGGGACG+AGG | 0.636589 | 2.4:-50358876 | MS.gene025119:intron |
GGATCAGGTGAAAATTGAGG+TGG | 0.639584 | 2.4:+50362130 | None:intergenic |
TAAAAGCTAGTCCAGGAACA+CGG | 0.640221 | 2.4:+50363012 | None:intergenic |
ATATTCAACATAAATCCACC+TGG | 0.642233 | 2.4:-50362160 | MS.gene025119:CDS |
GATGAAGTTGATTACTCGAG+GGG | 0.643129 | 2.4:+50361747 | None:intergenic |
CCAGGAAGCAGTGAGAAGAG+TGG | 0.648622 | 2.4:-50358846 | MS.gene025119:CDS |
GGTTGATGTTGATGAGAAGG+GGG | 0.653653 | 2.4:+50361941 | None:intergenic |
GAAGATGAAGATGATGAAGG+TGG | 0.654902 | 2.4:+50362235 | None:intergenic |
CGTTACATGCAAAACTCGAA+CGG | 0.655300 | 2.4:+50360997 | None:intergenic |
GTATATACCACATATATGGA+AGG | 0.655851 | 2.4:-50363716 | None:intergenic |
AATACAGACACAATTCTACC+AGG | 0.662180 | 2.4:-50362928 | MS.gene025119:intron |
TGAGGTGGAGAAGTTCCAGG+TGG | 0.714377 | 2.4:+50362145 | None:intergenic |
GGACTTGCAAGTGAACGTGA+TGG | 0.716456 | 2.4:-50360939 | MS.gene025119:CDS |
CAAATACAAATCATGCACCA+GGG | 0.722090 | 2.4:-50360829 | MS.gene025119:CDS |
TGACTTGATACAGTCCCATG+TGG | 0.800087 | 2.4:-50358819 | MS.gene025119:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTAAATTTTAATATTTA+TGG | - | chr2.4:50361978-50361997 | MS.gene025119:CDS | 0.0% |
!! | AAAGTTTATTGTAATTAAAT+TGG | - | chr2.4:50359195-50359214 | MS.gene025119:intron | 10.0% |
!! | AAATAAAAAAATAAAATACG+CGG | - | chr2.4:50361113-50361132 | MS.gene025119:CDS | 10.0% |
!!! | AAAATTTAATTTATACATGA+AGG | + | chr2.4:50361970-50361989 | None:intergenic | 10.0% |
!!! | AAATATATACTTTGATAATA+TGG | + | chr2.4:50358911-50358930 | None:intergenic | 10.0% |
!!! | AAATATTTTGTTAAAAATTG+GGG | - | chr2.4:50359967-50359986 | MS.gene025119:intron | 10.0% |
!!! | ACTTTTTATAATAGAATTTA+TGG | + | chr2.4:50362848-50362867 | None:intergenic | 10.0% |
!!! | ATTTTCAAATTTTTCAAAAA+TGG | - | chr2.4:50362471-50362490 | MS.gene025119:intron | 10.0% |
!!! | GTAAATATTTTGTTAAAAAT+TGG | - | chr2.4:50359965-50359984 | MS.gene025119:intron | 10.0% |
!!! | TATTTTTTTATTTACATCAT+TGG | + | chr2.4:50361106-50361125 | None:intergenic | 10.0% |
!!! | TGTTTTTTTTTTTTTTTTTG+AGG | - | chr2.4:50359919-50359938 | MS.gene025119:intron | 10.0% |
!! | ATATATAATGTAAATGTTGT+CGG | - | chr2.4:50359943-50359962 | MS.gene025119:intron | 15.0% |
!! | ATTAATTCGTGAAATAATTA+AGG | - | chr2.4:50361783-50361802 | MS.gene025119:CDS | 15.0% |
!! | TAATCTATATTCTACAAAAT+AGG | + | chr2.4:50361155-50361174 | None:intergenic | 15.0% |
!! | TTAATTCGTGAAATAATTAA+GGG | - | chr2.4:50361784-50361803 | MS.gene025119:CDS | 15.0% |
!!! | AATTCTTTTTTTTTTTTTGC+CGG | - | chr2.4:50359242-50359261 | MS.gene025119:intron | 15.0% |
!!! | AGTTTAGAATATAATAATGT+AGG | + | chr2.4:50358954-50358973 | None:intergenic | 15.0% |
!!! | ATTGGTTTATGTATAAAAAT+TGG | + | chr2.4:50363368-50363387 | None:intergenic | 15.0% |
!!! | CATATAGTAATATAAGATTT+TGG | + | chr2.4:50359774-50359793 | None:intergenic | 15.0% |
!! | ACTTCAAATATATGGTTAAA+AGG | - | chr2.4:50362655-50362674 | MS.gene025119:CDS | 20.0% |
!! | AGTATACAACTTCAAATATA+TGG | - | chr2.4:50362647-50362666 | MS.gene025119:intron | 20.0% |
!! | ATGATAAAAGTCCTAATATA+GGG | - | chr2.4:50360641-50360660 | MS.gene025119:intron | 20.0% |
!! | TAGAATATAATAATGTAGGT+AGG | + | chr2.4:50358950-50358969 | None:intergenic | 20.0% |
!! | TGATTATAAAACAACATGAT+GGG | + | chr2.4:50360888-50360907 | None:intergenic | 20.0% |
!! | TGCTATACTTGTATATATTA+AGG | - | chr2.4:50359629-50359648 | MS.gene025119:intron | 20.0% |
!! | TTAGAAAAAGACATTTCTTA+AGG | + | chr2.4:50359363-50359382 | None:intergenic | 20.0% |
!! | TTGATTATAAAACAACATGA+TGG | + | chr2.4:50360889-50360908 | None:intergenic | 20.0% |
!! | TTTCTCGAAAACAATATATA+TGG | + | chr2.4:50363075-50363094 | None:intergenic | 20.0% |
!!! | AAAGATGGAAACTAATTTTA+TGG | - | chr2.4:50363578-50363597 | MS.gene025119:intron | 20.0% |
!!! | AACAGTTGTTTAAATTTTGA+CGG | + | chr2.4:50362375-50362394 | None:intergenic | 20.0% |
!!! | AAGCATATCTCATTTTTTTA+AGG | - | chr2.4:50363227-50363246 | MS.gene025119:intron | 20.0% |
!!! | AATTTTCATCGACATAATAA+TGG | + | chr2.4:50362618-50362637 | None:intergenic | 20.0% |
!!! | ACAACTTGGTTTTTTTTTTT+TGG | - | chr2.4:50359022-50359041 | MS.gene025119:intron | 20.0% |
!!! | AGTATAGCAATAATTTTCTT+AGG | + | chr2.4:50359618-50359637 | None:intergenic | 20.0% |
!!! | ATCTAGAATAATGATATGAT+CGG | + | chr2.4:50362296-50362315 | None:intergenic | 20.0% |
!!! | ATTTTCATCGACATAATAAT+GGG | + | chr2.4:50362617-50362636 | None:intergenic | 20.0% |
!!! | ATTTTGTGGTATGTATTATA+AGG | + | chr2.4:50363540-50363559 | None:intergenic | 20.0% |
!!! | TGGATTATTTGTTATATAGT+AGG | + | chr2.4:50363055-50363074 | None:intergenic | 20.0% |
!!! | TTCAAATTTTTCAAAAATGG+TGG | - | chr2.4:50362474-50362493 | MS.gene025119:intron | 20.0% |
!!! | TTGATTTAACCACATTTTTT+CGG | - | chr2.4:50360165-50360184 | MS.gene025119:intron | 20.0% |
! | AATATTTATTCCTCCAAGTT+GGG | + | chr2.4:50360404-50360423 | None:intergenic | 25.0% |
! | AATCGTTTGCAAGAAAAAAT+TGG | + | chr2.4:50361012-50361031 | None:intergenic | 25.0% |
! | AATTACCAAGTTCTTCTTTA+GGG | - | chr2.4:50359094-50359113 | MS.gene025119:intron | 25.0% |
! | AATTTGAACTTTATTCTCTG+AGG | - | chr2.4:50360102-50360121 | MS.gene025119:intron | 25.0% |
! | AGAGACATTAAAAATCTTGA+CGG | + | chr2.4:50360969-50360988 | None:intergenic | 25.0% |
! | ATATAATAATGTAGGTAGGT+AGG | + | chr2.4:50358946-50358965 | None:intergenic | 25.0% |
! | ATGCATAATTATGTACCATA+AGG | - | chr2.4:50360908-50360927 | MS.gene025119:CDS | 25.0% |
! | CAAATATATGGTTAAAAGGA+AGG | - | chr2.4:50362659-50362678 | MS.gene025119:CDS | 25.0% |
! | CATGATAAAAGTCCTAATAT+AGG | - | chr2.4:50360640-50360659 | MS.gene025119:intron | 25.0% |
! | CTAAAATTTGACCCTATATT+AGG | + | chr2.4:50360655-50360674 | None:intergenic | 25.0% |
! | TCTATATTCTACAAAATAGG+TGG | + | chr2.4:50361152-50361171 | None:intergenic | 25.0% |
! | TTCAAAAACATTGTTCCTTA+TGG | + | chr2.4:50360926-50360945 | None:intergenic | 25.0% |
! | TTTGTTAAAAATTGGGGAAA+AGG | - | chr2.4:50359973-50359992 | MS.gene025119:intron | 25.0% |
!! | AAAGTATTTATGGTTTATCG+TGG | + | chr2.4:50362412-50362431 | None:intergenic | 25.0% |
!! | AACAGCTTTTTAATCAATAC+AGG | - | chr2.4:50359127-50359146 | MS.gene025119:intron | 25.0% |
!! | AATTGATAACTCAGACAATT+AGG | - | chr2.4:50362542-50362561 | MS.gene025119:intron | 25.0% |
!! | ATAGAGAATTTTCAGTTTCT+TGG | + | chr2.4:50359719-50359738 | None:intergenic | 25.0% |
!! | TATATGACTTGTGTAATCTT+TGG | + | chr2.4:50362759-50362778 | None:intergenic | 25.0% |
!! | TTTTCATCGACATAATAATG+GGG | + | chr2.4:50362616-50362635 | None:intergenic | 25.0% |
!!! | ATTACCGACTTATGTAAATA+AGG | + | chr2.4:50362451-50362470 | None:intergenic | 25.0% |
!!! | ATTGCCTTATTTACATAAGT+CGG | - | chr2.4:50362444-50362463 | MS.gene025119:intron | 25.0% |
!!! | CAATTAGGTTTTGAAAATAG+TGG | - | chr2.4:50362557-50362576 | MS.gene025119:intron | 25.0% |
!!! | CATTTTTGAAAGAGTTCAAT+TGG | + | chr2.4:50363386-50363405 | None:intergenic | 25.0% |
!!! | CTAACATTCATGTTTTTTGT+CGG | + | chr2.4:50361245-50361264 | None:intergenic | 25.0% |
!!! | GTCTCTAAACTTTTAGTTAA+AGG | - | chr2.4:50362330-50362349 | MS.gene025119:intron | 25.0% |
!!! | TAGCATGTTTTTGTTTTTAC+AGG | - | chr2.4:50359666-50359685 | MS.gene025119:intron | 25.0% |
!!! | TGATGTATTGATTCGATTAT+TGG | - | chr2.4:50361606-50361625 | MS.gene025119:intron | 25.0% |
AAGAAAGAGTAGTAAACTTG+TGG | - | chr2.4:50362881-50362900 | MS.gene025119:intron | 30.0% | |
AATATGAGAGATGAGTATTC+AGG | + | chr2.4:50360331-50360350 | None:intergenic | 30.0% | |
AGAATTGATGTCACAACAAT+TGG | - | chr2.4:50361420-50361439 | MS.gene025119:intron | 30.0% | |
ATATTAAGGCTATGTTGCTA+AGG | - | chr2.4:50359643-50359662 | MS.gene025119:intron | 30.0% | |
ATATTCAACATAAATCCACC+TGG | - | chr2.4:50360346-50360365 | MS.gene025119:intron | 30.0% | |
ATATTTCAAGCACACACAAT+TGG | + | chr2.4:50362698-50362717 | None:intergenic | 30.0% | |
ATGTAAATAAGGCAATTGCT+AGG | + | chr2.4:50362440-50362459 | None:intergenic | 30.0% | |
ATGTGGACCAAAATATATGA+TGG | - | chr2.4:50363704-50363723 | MS.gene025119:CDS | 30.0% | |
ATTGAAGATGAAGATGATGA+AGG | + | chr2.4:50360277-50360296 | None:intergenic | 30.0% | |
CAACAGTCTGAAAAGAAAAA+TGG | + | chr2.4:50359802-50359821 | None:intergenic | 30.0% | |
CAATTACCAAGTTCTTCTTT+AGG | - | chr2.4:50359093-50359112 | MS.gene025119:intron | 30.0% | |
CATACCACAAAATCTTCATT+AGG | - | chr2.4:50363547-50363566 | MS.gene025119:intron | 30.0% | |
GAAAACAAAAGAGTTTCTGA+TGG | + | chr2.4:50359334-50359353 | None:intergenic | 30.0% | |
GAATAAAGTTCAAATTCCCT+TGG | + | chr2.4:50360098-50360117 | None:intergenic | 30.0% | |
GAATATTTATTCCTCCAAGT+TGG | + | chr2.4:50360405-50360424 | None:intergenic | 30.0% | |
GGTAATTGTTGAAGTTGAAA+AGG | + | chr2.4:50360460-50360479 | None:intergenic | 30.0% | |
GTTTATGCAGATAAGTGAAT+GGG | - | chr2.4:50363624-50363643 | MS.gene025119:CDS | 30.0% | |
TACCATTTGAACTGTACTTA+CGG | + | chr2.4:50360003-50360022 | None:intergenic | 30.0% | |
TACTTCATCAAATAACCTTC+AGG | - | chr2.4:50361707-50361726 | MS.gene025119:CDS | 30.0% | |
TAGTCTGTCAAATGTCAATT+TGG | - | chr2.4:50362996-50363015 | MS.gene025119:CDS | 30.0% | |
TATTAGAAGCGAGAAATCAT+GGG | + | chr2.4:50360061-50360080 | None:intergenic | 30.0% | |
TGTAAATAAGGCAATTGCTA+GGG | + | chr2.4:50362439-50362458 | None:intergenic | 30.0% | |
TTCATCAGAAGATGAATCAA+TGG | - | chr2.4:50361540-50361559 | MS.gene025119:intron | 30.0% | |
TTGATTGTGCTTATACAACT+TGG | - | chr2.4:50359008-50359027 | MS.gene025119:intron | 30.0% | |
TTGTTATATAGTAGGTCGTT+TGG | + | chr2.4:50363047-50363066 | None:intergenic | 30.0% | |
! | AATATACTGATTAGGTCGAT+TGG | - | chr2.4:50362713-50362732 | MS.gene025119:intron | 30.0% |
! | ATAGTCTTTTTACAACTCCA+AGG | - | chr2.4:50360078-50360097 | MS.gene025119:intron | 30.0% |
! | GGAAGAATATTAACCAGTTT+TGG | - | chr2.4:50363599-50363618 | MS.gene025119:intron | 30.0% |
! | GTGCTTGAAATATACTGATT+AGG | - | chr2.4:50362705-50362724 | MS.gene025119:intron | 30.0% |
! | TAGTCTTTTTACAACTCCAA+GGG | - | chr2.4:50360079-50360098 | MS.gene025119:intron | 30.0% |
! | TTGATCAATGATGATGACAA+AGG | + | chr2.4:50363492-50363511 | None:intergenic | 30.0% |
!! | AGAATATTAACCAGTTTTGG+TGG | - | chr2.4:50363602-50363621 | MS.gene025119:intron | 30.0% |
!! | TTTTTGGTAAGCAAAATGCT+AGG | - | chr2.4:50362081-50362100 | MS.gene025119:CDS | 30.0% |
!!! | TATCTATGCTGACTTGTTTT+CGG | + | chr2.4:50362817-50362836 | None:intergenic | 30.0% |
!!! | TCATATATTTTGGTCCACAT+GGG | + | chr2.4:50363704-50363723 | None:intergenic | 30.0% |
!!! | TTAGGTTTTGAAAATAGTGG+CGG | - | chr2.4:50362560-50362579 | MS.gene025119:intron | 30.0% |
!!! | TTTCAGACTGTTGTTTTCAT+GGG | - | chr2.4:50359809-50359828 | MS.gene025119:intron | 30.0% |
!!! | TTTTCAGACTGTTGTTTTCA+TGG | - | chr2.4:50359808-50359827 | MS.gene025119:intron | 30.0% |
!!! | TTTTGTTTTTACAGGAAGCA+AGG | - | chr2.4:50359674-50359693 | MS.gene025119:intron | 30.0% |
AAACATTATGTTGATCCGAG+TGG | - | chr2.4:50361044-50361063 | MS.gene025119:CDS | 35.0% | |
AACAAAGGAGAAATTGAGCT+TGG | - | chr2.4:50359836-50359855 | MS.gene025119:intron | 35.0% | |
AATACAGACACAATTCTACC+AGG | - | chr2.4:50359578-50359597 | MS.gene025119:intron | 35.0% | |
ACAAATACAAATCATGCACC+AGG | - | chr2.4:50361676-50361695 | MS.gene025119:CDS | 35.0% | |
ACATGTCAACTTGGTTTCAA+TGG | - | chr2.4:50361648-50361667 | MS.gene025119:intron | 35.0% | |
ACCATTTGAACTGTACTTAC+GGG | + | chr2.4:50360002-50360021 | None:intergenic | 35.0% | |
AGAAGATGAATCAATGGTAG+TGG | - | chr2.4:50361546-50361565 | MS.gene025119:intron | 35.0% | |
AGCACAATCAACAACTACTA+TGG | + | chr2.4:50358999-50359018 | None:intergenic | 35.0% | |
ATCAAATAACCTTCAGGCTA+AGG | - | chr2.4:50361713-50361732 | MS.gene025119:CDS | 35.0% | |
ATTACTTCCTCAAGGAACAA+AGG | - | chr2.4:50360843-50360862 | MS.gene025119:CDS | 35.0% | |
ATTGTAGAAACCATCCAAGA+AGG | + | chr2.4:50359061-50359080 | None:intergenic | 35.0% | |
CAAATACAAATCATGCACCA+GGG | - | chr2.4:50361677-50361696 | MS.gene025119:CDS | 35.0% | |
CAAGAGATTGCATTAGAGAA+CGG | + | chr2.4:50358855-50358874 | None:intergenic | 35.0% | |
CACAAAATCTTCATTAGGTG+AGG | - | chr2.4:50363552-50363571 | MS.gene025119:intron | 35.0% | |
CAGTTCAAATGGTAAAAGAC+TGG | - | chr2.4:50360009-50360028 | MS.gene025119:intron | 35.0% | |
CATTAGGTGAGGAAAAAAGA+TGG | - | chr2.4:50363563-50363582 | MS.gene025119:intron | 35.0% | |
CTACTCTTTCTTAACGATTG+AGG | + | chr2.4:50362873-50362892 | None:intergenic | 35.0% | |
CTATTAGAAGCGAGAAATCA+TGG | + | chr2.4:50360062-50360081 | None:intergenic | 35.0% | |
GGTTTATGCAGATAAGTGAA+TGG | - | chr2.4:50363623-50363642 | MS.gene025119:CDS | 35.0% | |
GTCTGTCTTGAAAAATCTTC+AGG | + | chr2.4:50360232-50360251 | None:intergenic | 35.0% | |
GTTGTAGGGAATAATTGTGT+TGG | + | chr2.4:50360493-50360512 | None:intergenic | 35.0% | |
TCAACCTCAGCAAAATTATG+TGG | - | chr2.4:50360582-50360601 | MS.gene025119:intron | 35.0% | |
TCATGATCAACATGTCAACT+TGG | - | chr2.4:50361639-50361658 | MS.gene025119:intron | 35.0% | |
TGATGAAGTAAATCATTCCC+TGG | + | chr2.4:50361697-50361716 | None:intergenic | 35.0% | |
TTATATAGTAGGTCGTTTGG+TGG | + | chr2.4:50363044-50363063 | None:intergenic | 35.0% | |
TTCCATACTGATAACAGCTA+AGG | - | chr2.4:50361345-50361364 | MS.gene025119:intron | 35.0% | |
! | AATTGTGTTGGTGTGATTTG+AGG | + | chr2.4:50360481-50360500 | None:intergenic | 35.0% |
! | ACGGATAAATTCAGTTCTGA+CGG | + | chr2.4:50358836-50358855 | None:intergenic | 35.0% |
! | ATGATGAAGTTGATTACTCG+AGG | + | chr2.4:50360764-50360783 | None:intergenic | 35.0% |
! | CTCACCTAATGAAGATTTTG+TGG | + | chr2.4:50363554-50363573 | None:intergenic | 35.0% |
! | TGACTTGTGTAATCTTTGGA+TGG | + | chr2.4:50362755-50362774 | None:intergenic | 35.0% |
! | TGATGAAGTTGATTACTCGA+GGG | + | chr2.4:50360763-50360782 | None:intergenic | 35.0% |
!! | AATTGTTGCAGCTCTAAGTA+GGG | + | chr2.4:50359531-50359550 | None:intergenic | 35.0% |
!!! | AACGGTTTTTAGAATGACAC+TGG | + | chr2.4:50362125-50362144 | None:intergenic | 35.0% |
!!! | GTCGTTGTTAGAGTTTTGAA+CGG | + | chr2.4:50362143-50362162 | None:intergenic | 35.0% |
!!! | TTCAGACTGTTGTTTTCATG+GGG | - | chr2.4:50359810-50359829 | MS.gene025119:intron | 35.0% |
AAAGTGATCTCTCGTGAATC+CGG | + | chr2.4:50359264-50359283 | None:intergenic | 40.0% | |
AAATAAGGCAATTGCTAGGG+TGG | + | chr2.4:50362436-50362455 | None:intergenic | 40.0% | |
AATAAGGCAATTGCTAGGGT+GGG | + | chr2.4:50362435-50362454 | None:intergenic | 40.0% | |
ACACTCCCTAAAGAAGAACT+TGG | + | chr2.4:50359102-50359121 | None:intergenic | 40.0% | |
AGAGATGAGTATTCAGGAGT+AGG | + | chr2.4:50360325-50360344 | None:intergenic | 40.0% | |
AGCATGTCTCATTGCAATGT+CGG | - | chr2.4:50363256-50363275 | MS.gene025119:intron | 40.0% | |
ATCCTTTCTCACACTTGAGA+TGG | - | chr2.4:50362198-50362217 | MS.gene025119:CDS | 40.0% | |
ATGAGATCACTATCAACAGC+AGG | - | chr2.4:50360295-50360314 | MS.gene025119:intron | 40.0% | |
CATTCTCAGTGTGTGTTGTA+GGG | + | chr2.4:50360507-50360526 | None:intergenic | 40.0% | |
CGTTACATGCAAAACTCGAA+CGG | + | chr2.4:50361512-50361531 | None:intergenic | 40.0% | |
CGTTCTCTAATGCAATCTCT+TGG | - | chr2.4:50358853-50358872 | MS.gene025119:CDS | 40.0% | |
CTACTTAGAGCTGCAACAAT+TGG | - | chr2.4:50359530-50359549 | MS.gene025119:intron | 40.0% | |
CTCCTTAGCTGTTATCAGTA+TGG | + | chr2.4:50361350-50361369 | None:intergenic | 40.0% | |
GAAGATGAAGATGATGAAGG+TGG | + | chr2.4:50360274-50360293 | None:intergenic | 40.0% | |
GAATAGTCGTTTGTCCTTCT+TGG | - | chr2.4:50359044-50359063 | MS.gene025119:intron | 40.0% | |
GATGCTCTCACATTTGTCTT+TGG | - | chr2.4:50358875-50358894 | MS.gene025119:CDS | 40.0% | |
GGAGACATTGAGATCTTTGA+TGG | - | chr2.4:50361366-50361385 | MS.gene025119:intron | 40.0% | |
GGCTGCATAAACTTTATCAC+AGG | - | chr2.4:50362581-50362600 | MS.gene025119:intron | 40.0% | |
GTAGGATCAGGTGAAAATTG+AGG | + | chr2.4:50360382-50360401 | None:intergenic | 40.0% | |
TAAAAGCTAGTCCAGGAACA+CGG | + | chr2.4:50359497-50359516 | None:intergenic | 40.0% | |
TAGGACAACAAGTACTAACC+TGG | + | chr2.4:50359599-50359618 | None:intergenic | 40.0% | |
TCATTCTCAGTGTGTGTTGT+AGG | + | chr2.4:50360508-50360527 | None:intergenic | 40.0% | |
TCCCGTAAGTACAGTTCAAA+TGG | - | chr2.4:50359998-50360017 | MS.gene025119:intron | 40.0% | |
TCTGCATAAACCACCAAAAC+TGG | + | chr2.4:50363615-50363634 | None:intergenic | 40.0% | |
TGATTCCTAAAAGCTAGTCC+AGG | + | chr2.4:50359504-50359523 | None:intergenic | 40.0% | |
TTTACAGGAAGCAAGGATCA+AGG | - | chr2.4:50359681-50359700 | MS.gene025119:intron | 40.0% | |
! | CGACATAATAATGGGGTTCT+AGG | + | chr2.4:50362609-50362628 | None:intergenic | 40.0% |
! | CTTAGAGCATTACTTCCTCA+AGG | - | chr2.4:50360835-50360854 | MS.gene025119:CDS | 40.0% |
! | GATGAAGTTGATTACTCGAG+GGG | + | chr2.4:50360762-50360781 | None:intergenic | 40.0% |
! | GGGGTGTAGATAGAACATTT+TGG | + | chr2.4:50360549-50360568 | None:intergenic | 40.0% |
! | GGTAGTAGTGTGTTTGAAAC+AGG | + | chr2.4:50360439-50360458 | None:intergenic | 40.0% |
! | GTGTTTGAAACAGGTCTCAT+TGG | + | chr2.4:50360430-50360449 | None:intergenic | 40.0% |
! | TGTGCCACATAATTTTGCTG+AGG | + | chr2.4:50360589-50360608 | None:intergenic | 40.0% |
! | TTTATTCCTCCAAGTTGGGT+AGG | + | chr2.4:50360400-50360419 | None:intergenic | 40.0% |
! | TTTGAAACAGGTCTCATTGG+TGG | + | chr2.4:50360427-50360446 | None:intergenic | 40.0% |
!! | AGGTTGATGTTGATGAGAAG+GGG | + | chr2.4:50360569-50360588 | None:intergenic | 40.0% |
!! | CAATTGTTGCAGCTCTAAGT+AGG | + | chr2.4:50359532-50359551 | None:intergenic | 40.0% |
!! | CGTTCGAGTTTTGCATGTAA+CGG | - | chr2.4:50361510-50361529 | MS.gene025119:intron | 40.0% |
!! | CTAGGGTGGGAAAGTATTTA+TGG | + | chr2.4:50362422-50362441 | None:intergenic | 40.0% |
!! | GAGGTTGATGTTGATGAGAA+GGG | + | chr2.4:50360570-50360589 | None:intergenic | 40.0% |
!! | GTTCGAGTTTTGCATGTAAC+GGG | - | chr2.4:50361511-50361530 | MS.gene025119:intron | 40.0% |
!! | TGAGGTTGATGTTGATGAGA+AGG | + | chr2.4:50360571-50360590 | None:intergenic | 40.0% |
!! | TTCGAGTTTTGCATGTAACG+GGG | - | chr2.4:50361512-50361531 | MS.gene025119:intron | 40.0% |
AATTGAGGTGGAGAAGTTCC+AGG | + | chr2.4:50360367-50360386 | None:intergenic | 45.0% | |
AGATTCGCTCTTCAACCTTG+TGG | - | chr2.4:50359290-50359309 | MS.gene025119:intron | 45.0% | |
AGTCGTTTGTCCTTCTTGGA+TGG | - | chr2.4:50359048-50359067 | MS.gene025119:intron | 45.0% | |
CACCATCTCAAGTGTGAGAA+AGG | + | chr2.4:50362203-50362222 | None:intergenic | 45.0% | |
CAGAAGCTAGTGCATTTGGA+AGG | - | chr2.4:50360611-50360630 | MS.gene025119:intron | 45.0% | |
CATCCAGAAGCTAGTGCATT+TGG | - | chr2.4:50360607-50360626 | MS.gene025119:intron | 45.0% | |
CTCTTCAACCTTGTGGTTCT+CGG | - | chr2.4:50359297-50359316 | MS.gene025119:intron | 45.0% | |
CTGAGTAATCCTTAGCCTGA+AGG | + | chr2.4:50361725-50361744 | None:intergenic | 45.0% | |
CTTCAGGCTAAGGATTACTC+AGG | - | chr2.4:50361723-50361742 | MS.gene025119:CDS | 45.0% | |
GACTTGCAAGTGAACGTGAT+GGG | - | chr2.4:50361568-50361587 | MS.gene025119:intron | 45.0% | |
GATCGCTCAAGTAAGATCTC+AGG | - | chr2.4:50361078-50361097 | MS.gene025119:CDS | 45.0% | |
GGATCAGGTGAAAATTGAGG+TGG | + | chr2.4:50360379-50360398 | None:intergenic | 45.0% | |
GTACGTACCTTTGTTCCTTG+AGG | + | chr2.4:50360853-50360872 | None:intergenic | 45.0% | |
TGACTTGATACAGTCCCATG+TGG | - | chr2.4:50363687-50363706 | MS.gene025119:CDS | 45.0% | |
TGCACAGGCGGATATTCAAA+CGG | - | chr2.4:50360189-50360208 | MS.gene025119:intron | 45.0% | |
! | AATTCAGTTCTGACGGCTAC+AGG | + | chr2.4:50358829-50358848 | None:intergenic | 45.0% |
! | CTTCCAAATGCACTAGCTTC+TGG | + | chr2.4:50360613-50360632 | None:intergenic | 45.0% |
! | GATCTGAGTCTAGTTCCACT+CGG | + | chr2.4:50361062-50361081 | None:intergenic | 45.0% |
! | GGTTGATGTTGATGAGAAGG+GGG | + | chr2.4:50360568-50360587 | None:intergenic | 45.0% |
! | GTTTTCATGGGGTGCAACAA+AGG | - | chr2.4:50359821-50359840 | MS.gene025119:intron | 45.0% |
!!! | CTATGCTGACTTGTTTTCGG+TGG | + | chr2.4:50362814-50362833 | None:intergenic | 45.0% |
!!! | GTGTTCCTGGACTAGCTTTT+AGG | - | chr2.4:50359496-50359515 | MS.gene025119:intron | 45.0% |
!!! | GTTTTGTTTAGCCGTGTTCC+TGG | - | chr2.4:50359483-50359502 | MS.gene025119:intron | 45.0% |
!! | AAAACTATAAAAATTATAAA+TGG | + | chr2.4:50362059-50362078 | None:intergenic | 5.0% |
!! | AAACTATAAAAATTATAAAT+GGG | + | chr2.4:50362058-50362077 | None:intergenic | 5.0% |
!!! | ATTTATATTAATTTTTTTAG+AGG | - | chr2.4:50363135-50363154 | MS.gene025119:intron | 5.0% |
!!! | ATTTTTATAGTTTTTTTTTT+TGG | - | chr2.4:50362065-50362084 | MS.gene025119:CDS | 5.0% |
!!! | TAAATATTTTGTTAAAAATT+GGG | - | chr2.4:50359966-50359985 | MS.gene025119:intron | 5.0% |
CCTGTGCAGCCGAAAAAATG+TGG | + | chr2.4:50360177-50360196 | None:intergenic | 50.0% | |
GCAGATAAGTGAATGGGACG+AGG | - | chr2.4:50363630-50363649 | MS.gene025119:CDS | 50.0% | |
GGACTTGCAAGTGAACGTGA+TGG | - | chr2.4:50361567-50361586 | MS.gene025119:intron | 50.0% | |
GTCTCAAACCGAGAACCACA+AGG | + | chr2.4:50359308-50359327 | None:intergenic | 50.0% | |
TCACCTGATCCTACCCAACT+TGG | - | chr2.4:50360388-50360407 | MS.gene025119:intron | 50.0% | |
TCTTCTCACTGCTTCCTGGA+AGG | + | chr2.4:50363659-50363678 | None:intergenic | 50.0% | |
! | AGTTCTGACGGCTACAGGAA+GGG | + | chr2.4:50358824-50358843 | None:intergenic | 50.0% |
!!! | CATTTTTTCGGCTGCACAGG+CGG | - | chr2.4:50360177-50360196 | MS.gene025119:intron | 50.0% |
!!! | CCACATTTTTTCGGCTGCAC+AGG | - | chr2.4:50360174-50360193 | MS.gene025119:intron | 50.0% |
CCACTCTTCTCACTGCTTCC+TGG | + | chr2.4:50363663-50363682 | None:intergenic | 55.0% | |
CCAGGAAGCAGTGAGAAGAG+TGG | - | chr2.4:50363660-50363679 | MS.gene025119:CDS | 55.0% | |
CCTGATCCTACCCAACTTGG+AGG | - | chr2.4:50360391-50360410 | MS.gene025119:intron | 55.0% | |
TGAGGTGGAGAAGTTCCAGG+TGG | + | chr2.4:50360364-50360383 | None:intergenic | 55.0% | |
! | CAGTTCTGACGGCTACAGGA+AGG | + | chr2.4:50358825-50358844 | None:intergenic | 55.0% |
! | CCTCCAAGTTGGGTAGGATC+AGG | + | chr2.4:50360394-50360413 | None:intergenic | 55.0% |
ATGGGACGAGGAAGCCTTCC+AGG | - | chr2.4:50363642-50363661 | MS.gene025119:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 50358805 | 50363723 | 50358805 | ID=MS.gene025119 |
chr2.4 | mRNA | 50358805 | 50363723 | 50358805 | ID=MS.gene025119.t1;Parent=MS.gene025119 |
chr2.4 | exon | 50363608 | 50363723 | 50363608 | ID=MS.gene025119.t1.exon1;Parent=MS.gene025119.t1 |
chr2.4 | CDS | 50363608 | 50363723 | 50363608 | ID=cds.MS.gene025119.t1;Parent=MS.gene025119.t1 |
chr2.4 | exon | 50363353 | 50363478 | 50363353 | ID=MS.gene025119.t1.exon2;Parent=MS.gene025119.t1 |
chr2.4 | CDS | 50363353 | 50363478 | 50363353 | ID=cds.MS.gene025119.t1;Parent=MS.gene025119.t1 |
chr2.4 | exon | 50362929 | 50363034 | 50362929 | ID=MS.gene025119.t1.exon3;Parent=MS.gene025119.t1 |
chr2.4 | CDS | 50362929 | 50363034 | 50362929 | ID=cds.MS.gene025119.t1;Parent=MS.gene025119.t1 |
chr2.4 | exon | 50362826 | 50362840 | 50362826 | ID=MS.gene025119.t1.exon4;Parent=MS.gene025119.t1 |
chr2.4 | CDS | 50362826 | 50362840 | 50362826 | ID=cds.MS.gene025119.t1;Parent=MS.gene025119.t1 |
chr2.4 | exon | 50362651 | 50362713 | 50362651 | ID=MS.gene025119.t1.exon5;Parent=MS.gene025119.t1 |
chr2.4 | CDS | 50362651 | 50362713 | 50362651 | ID=cds.MS.gene025119.t1;Parent=MS.gene025119.t1 |
chr2.4 | exon | 50361664 | 50362332 | 50361664 | ID=MS.gene025119.t1.exon6;Parent=MS.gene025119.t1 |
chr2.4 | CDS | 50361664 | 50362332 | 50361664 | ID=cds.MS.gene025119.t1;Parent=MS.gene025119.t1 |
chr2.4 | exon | 50360784 | 50361194 | 50360784 | ID=MS.gene025119.t1.exon7;Parent=MS.gene025119.t1 |
chr2.4 | CDS | 50360784 | 50361194 | 50360784 | ID=cds.MS.gene025119.t1;Parent=MS.gene025119.t1 |
chr2.4 | exon | 50358805 | 50358894 | 50358805 | ID=MS.gene025119.t1.exon8;Parent=MS.gene025119.t1 |
chr2.4 | CDS | 50358805 | 50358894 | 50358805 | ID=cds.MS.gene025119.t1;Parent=MS.gene025119.t1 |
Gene Sequence |
Protein sequence |