AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02518

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02518.t1 MTR_3g088755 74.783 115 28 1 2 116 606 719 4.46e-53 177
MS.gene02518.t1 MTR_2g009670 73.043 115 30 1 2 116 609 722 1.28e-51 173
MS.gene02518.t1 MTR_3g088750 72.174 115 31 1 2 116 604 717 2.18e-50 170
MS.gene02518.t1 MTR_3g088760 72.174 115 31 1 2 116 599 712 4.13e-50 169
MS.gene02518.t1 MTR_3g088780 69.903 103 30 1 2 104 643 744 3.81e-41 144
MS.gene02518.t1 MTR_1g027670 57.391 115 49 0 2 116 232 346 1.35e-40 138
MS.gene02518.t1 MTR_3g088775 68.627 102 31 1 1 102 621 721 2.42e-40 142
MS.gene02518.t1 MTR_3g088785 62.385 109 40 1 1 109 600 707 5.42e-39 138
MS.gene02518.t1 MTR_1g010250 57.018 114 49 0 2 115 474 587 6.96e-39 137
MS.gene02518.t1 MTR_1g027570 56.522 115 50 0 2 116 590 704 2.51e-38 136
MS.gene02518.t1 MTR_1g027580 56.522 115 50 0 2 116 590 704 2.88e-38 136
MS.gene02518.t1 MTR_1g010220 56.140 114 50 0 2 115 593 706 6.25e-37 132
MS.gene02518.t1 MTR_1g027660 53.913 115 53 0 2 116 567 681 5.32e-36 129
MS.gene02518.t1 MTR_1g027640 54.783 115 52 0 2 116 595 709 5.75e-36 129
MS.gene02518.t1 MTR_1g027490 54.783 115 52 0 2 116 575 689 1.31e-35 128
MS.gene02518.t1 MTR_1g027600 53.913 115 53 0 2 116 593 707 2.21e-35 128
MS.gene02518.t1 MTR_1g010260 48.246 114 35 1 2 115 602 691 7.34e-28 106
MS.gene02518.t1 MTR_1g010240 48.246 114 35 1 2 115 516 605 7.93e-28 106
MS.gene02518.t1 MTR_7g079350 43.750 96 54 0 2 97 540 635 4.55e-22 90.1
MS.gene02518.t1 MTR_2g031530 43.519 108 61 0 2 109 574 681 1.38e-21 88.6
MS.gene02518.t1 MTR_7g079320 43.750 96 54 0 2 97 533 628 1.43e-21 88.6
MS.gene02518.t1 MTR_2g031520 46.875 96 51 0 2 97 560 655 3.00e-21 87.8
MS.gene02518.t1 MTR_3g069050 43.396 106 57 2 2 104 524 629 5.05e-21 87.0
MS.gene02518.t1 MTR_8g078940 39.450 109 58 2 2 102 513 621 1.51e-16 74.3
MS.gene02518.t1 MTR_5g018570 39.450 109 60 2 2 107 507 612 2.29e-16 73.9
MS.gene02518.t1 MTR_3g111510 40.708 113 57 3 2 107 514 623 7.23e-16 72.4
MS.gene02518.t1 MTR_4g028140 35.849 106 67 1 1 105 390 495 8.83e-15 69.3
MS.gene02518.t1 MTR_4g067230 35.000 100 64 1 2 100 700 799 1.70e-14 68.6
MS.gene02518.t1 MTR_5g026370 38.384 99 56 2 2 97 275 371 2.09e-14 68.2
MS.gene02518.t1 MTR_2g098910 34.343 99 63 1 2 100 705 801 2.81e-14 67.8
MS.gene02518.t1 MTR_7g103180 38.542 96 53 1 2 91 523 618 2.89e-14 67.8
MS.gene02518.t1 MTR_6g044740 37.113 97 58 1 2 95 509 605 5.23e-14 67.0
MS.gene02518.t1 MTR_4g039490 63.462 52 19 0 2 53 44 95 1.19e-13 62.0
MS.gene02518.t1 MTR_3g096555 36.842 95 60 0 2 96 482 576 1.71e-13 65.5
MS.gene02518.t1 MTR_3g096555 36.842 95 60 0 2 96 524 618 1.82e-13 65.5
MS.gene02518.t1 MTR_3g087060 38.542 96 57 2 3 96 467 562 2.17e-13 65.5
MS.gene02518.t1 MTR_5g079840 38.947 95 57 1 2 95 264 358 2.54e-13 65.1
MS.gene02518.t1 MTR_1g040130 34.000 100 66 0 2 101 6 105 2.85e-13 62.0
MS.gene02518.t1 MTR_3g087060 38.542 96 57 2 3 96 456 551 3.16e-13 64.7
MS.gene02518.t1 MTR_4g115120 37.234 94 58 1 2 94 297 390 3.60e-13 64.7
MS.gene02518.t1 MTR_2g080220 36.634 101 64 0 2 102 680 780 3.66e-13 64.7
MS.gene02518.t1 MTR_1g080740 34.746 118 74 1 2 116 702 819 5.96e-13 63.9
MS.gene02518.t1 MTR_8g467150 35.455 110 68 1 2 111 627 733 6.13e-13 63.9
MS.gene02518.t1 MTR_8g063300 35.417 96 60 1 2 95 243 338 6.38e-13 63.9
MS.gene02518.t1 MTR_2g030310 35.965 114 73 0 2 115 699 812 6.64e-13 63.9
MS.gene02518.t1 MTR_2g030310 35.965 114 73 0 2 115 699 812 6.89e-13 63.9
MS.gene02518.t1 MTR_5g037410 38.144 97 57 1 2 95 517 613 7.83e-13 63.5
MS.gene02518.t1 MTR_8g020920 37.255 102 63 1 2 102 263 364 8.01e-13 63.5
MS.gene02518.t1 MTR_7g115300 34.951 103 67 0 2 104 707 809 8.80e-13 63.5
MS.gene02518.t1 MTR_7g009320 35.514 107 68 1 2 107 310 416 9.18e-13 63.5
MS.gene02518.t1 MTR_8g037700 37.624 101 63 0 2 102 708 808 1.03e-12 63.5
MS.gene02518.t1 MTR_1g040073 35.000 100 65 0 2 101 611 710 1.08e-12 63.5
MS.gene02518.t1 MTR_3g067765 33.684 95 62 1 2 95 211 305 1.24e-12 62.8
MS.gene02518.t1 MTR_7g074610 38.947 95 57 1 2 95 275 369 1.57e-12 62.8
MS.gene02518.t1 MTR_4g018790 37.500 96 59 1 1 95 352 447 1.76e-12 62.8
MS.gene02518.t1 MTR_7g073230 36.458 96 60 1 1 95 351 446 2.03e-12 62.4
MS.gene02518.t1 MTR_5g033820 32.075 106 69 2 3 107 483 586 2.07e-12 62.4
MS.gene02518.t1 MTR_4g063940 34.000 100 65 1 3 101 283 382 3.73e-12 61.6
MS.gene02518.t1 MTR_2g100290 32.432 111 75 0 2 112 585 695 3.78e-12 61.6
MS.gene02518.t1 MTR_8g088410 34.314 102 66 1 2 102 257 358 3.98e-12 61.6
MS.gene02518.t1 MTR_3g462840 33.333 99 64 1 2 98 252 350 4.13e-12 61.6
MS.gene02518.t1 MTR_2g096160 34.653 101 66 0 2 102 681 781 4.27e-12 61.6
MS.gene02518.t1 MTR_4g069970 34.737 95 62 0 1 95 318 412 5.28e-12 61.2
MS.gene02518.t1 MTR_3g067770 35.789 95 60 1 2 95 184 278 6.08e-12 60.8
MS.gene02518.t1 MTR_7g082530 35.354 99 61 1 2 97 538 636 6.13e-12 61.2
MS.gene02518.t1 MTR_7g082530 35.354 99 61 1 2 97 538 636 6.13e-12 61.2
MS.gene02518.t1 MTR_4g069970 34.737 95 62 0 1 95 318 412 6.81e-12 60.8
MS.gene02518.t1 MTR_6g044830 37.113 97 58 1 2 95 488 584 7.90e-12 60.8
MS.gene02518.t1 MTR_6g043790 29.412 102 71 1 2 102 673 774 8.11e-12 60.8
MS.gene02518.t1 MTR_3g067770 35.789 95 60 1 2 95 257 351 8.52e-12 60.5
MS.gene02518.t1 MTR_1g029690 33.333 105 68 1 2 106 534 636 9.32e-12 60.8
MS.gene02518.t1 MTR_5g023980 36.111 108 66 1 5 109 269 376 9.45e-12 60.5
MS.gene02518.t1 MTR_4g061550 32.353 102 68 1 2 103 276 376 1.06e-11 60.5
MS.gene02518.t1 MTR_4g061833 35.644 101 65 0 2 102 678 778 1.06e-11 60.5
MS.gene02518.t1 MTR_4g061930 35.644 101 65 0 2 102 678 778 1.06e-11 60.5
MS.gene02518.t1 MTR_1g110120 35.185 108 64 2 2 103 505 612 1.33e-11 60.1
MS.gene02518.t1 MTR_7g078730 31.132 106 71 1 1 104 339 444 1.41e-11 60.1
MS.gene02518.t1 MTR_4g063930 34.694 98 63 1 3 99 362 459 1.53e-11 60.1
MS.gene02518.t1 MTR_4g063935 32.653 98 65 1 3 99 301 398 1.57e-11 60.1
MS.gene02518.t1 MTR_4g063935 32.653 98 65 1 3 99 281 378 1.67e-11 59.7
MS.gene02518.t1 MTR_4g061833 35.644 101 65 0 2 102 527 627 1.80e-11 59.7
MS.gene02518.t1 MTR_2g096950 36.634 101 63 1 2 101 263 363 1.83e-11 59.7
MS.gene02518.t1 MTR_4g123480 32.990 97 64 1 2 97 92 188 2.03e-11 58.5
MS.gene02518.t1 MTR_6g011570 33.333 99 64 1 2 98 255 353 2.10e-11 59.7
MS.gene02518.t1 MTR_8g016120 33.000 100 67 0 2 101 583 682 2.18e-11 59.7
MS.gene02518.t1 MTR_5g035030 33.333 105 67 3 2 104 246 349 2.46e-11 59.3
MS.gene02518.t1 MTR_8g028695 32.632 95 64 0 1 95 322 416 2.47e-11 59.3
MS.gene02518.t1 MTR_4g063945 33.673 98 64 1 3 99 280 377 2.60e-11 59.3
MS.gene02518.t1 MTR_4g063945 33.673 98 64 1 3 99 278 375 2.63e-11 59.3
MS.gene02518.t1 MTR_4g095045 34.000 100 66 0 2 101 485 584 2.72e-11 59.3
MS.gene02518.t1 MTR_1g110130 34.783 92 57 1 2 90 466 557 2.93e-11 59.3
MS.gene02518.t1 MTR_1g100110 34.653 101 66 0 2 102 664 764 3.06e-11 59.3
MS.gene02518.t1 MTR_4g095042 35.000 100 65 0 2 101 676 775 3.80e-11 58.9
MS.gene02518.t1 MTR_1g040200 33.663 101 67 0 1 101 242 342 3.81e-11 58.9
MS.gene02518.t1 MTR_8g008820 31.579 95 64 1 2 95 264 358 4.44e-11 58.5
MS.gene02518.t1 MTR_2g008360 34.286 105 65 2 3 105 474 576 4.89e-11 58.5
MS.gene02518.t1 MTR_3g086120 37.234 94 59 0 2 95 786 879 5.27e-11 58.5
MS.gene02518.t1 MTR_5g055310 35.135 111 66 2 2 109 490 597 5.30e-11 58.5
MS.gene02518.t1 MTR_7g073660 35.185 108 70 0 2 109 720 827 6.70e-11 58.2
MS.gene02518.t1 MTR_6g082890 32.743 113 69 3 2 111 481 589 7.03e-11 58.2
MS.gene02518.t1 MTR_2g090120 33.333 99 65 1 1 98 670 768 7.66e-11 58.2
MS.gene02518.t1 MTR_5g030920 32.353 102 69 0 2 103 776 877 8.39e-11 58.2
MS.gene02518.t1 MTR_5g030920 32.353 102 69 0 2 103 753 854 8.54e-11 57.8
MS.gene02518.t1 MTR_3g067795 34.737 95 61 1 2 95 185 279 8.69e-11 57.8
MS.gene02518.t1 MTR_1g064560 34.043 94 60 1 5 98 671 762 9.11e-11 57.8
MS.gene02518.t1 MTR_4g063950 33.663 101 65 2 2 101 276 375 9.43e-11 57.8
MS.gene02518.t1 MTR_3g067795 34.737 95 61 1 2 95 185 279 9.60e-11 57.4
MS.gene02518.t1 MTR_2g008380 35.238 105 64 2 3 105 466 568 9.82e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02518.t1 AT1G21245 51.402 107 51 1 1 106 18 124 1.54e-31 109
MS.gene02518.t1 AT1G21240 52.336 107 50 1 1 106 592 698 1.41e-30 114
MS.gene02518.t1 AT1G21210 48.718 117 59 1 1 116 587 703 1.49e-30 114
MS.gene02518.t1 AT1G21230 52.336 107 50 1 1 106 585 691 2.09e-30 114
MS.gene02518.t1 AT1G21240 52.336 107 50 1 1 106 331 437 7.27e-30 111
MS.gene02518.t1 AT1G21250 49.533 107 53 1 1 106 586 692 1.50e-28 108
MS.gene02518.t1 AT1G21270 50.467 107 52 1 1 106 581 687 1.42e-27 105
MS.gene02518.t1 AT1G16130 53.191 94 44 0 2 95 594 687 2.73e-27 105
MS.gene02518.t1 AT3G25490 50.943 106 51 1 1 105 285 390 6.22e-27 103
MS.gene02518.t1 AT1G79680 44.643 112 58 1 2 109 612 723 8.35e-27 103
MS.gene02518.t1 AT1G79670 51.064 94 46 0 2 95 562 655 4.23e-26 101
MS.gene02518.t1 AT1G79670 51.064 94 46 0 2 95 599 692 4.26e-26 101
MS.gene02518.t1 AT1G69730 41.880 117 64 1 2 114 626 742 6.69e-26 101
MS.gene02518.t1 AT1G16150 48.936 94 48 0 2 95 602 695 2.35e-25 99.4
MS.gene02518.t1 AT1G16260 45.833 96 52 0 2 97 568 663 5.53e-22 89.7
MS.gene02518.t1 AT1G16260 45.833 96 52 0 2 97 568 663 5.53e-22 89.7
MS.gene02518.t1 AT1G16260 45.833 96 52 0 2 97 559 654 5.58e-22 89.7
MS.gene02518.t1 AT3G53840 46.000 100 51 1 2 98 537 636 4.67e-21 87.4
MS.gene02518.t1 AT1G16120 48.387 93 48 0 3 95 608 700 8.80e-20 83.6
MS.gene02518.t1 AT1G19390 42.574 101 57 1 3 102 630 730 1.87e-19 82.8
MS.gene02518.t1 AT5G02070 43.299 97 52 1 2 95 548 644 2.91e-19 82.0
MS.gene02518.t1 AT1G17910 43.158 95 53 1 2 95 632 726 3.25e-19 82.0
MS.gene02518.t1 AT4G31110 43.617 94 52 1 3 95 633 726 4.53e-18 79.0
MS.gene02518.t1 AT4G31110 43.617 94 52 1 3 95 611 704 4.93e-18 78.6
MS.gene02518.t1 AT1G16160 44.086 93 52 0 3 95 611 703 4.95e-18 78.6
MS.gene02518.t1 AT4G31100 43.617 94 52 1 3 95 624 717 5.13e-18 78.6
MS.gene02518.t1 AT3G04690 40.594 101 60 0 2 102 695 795 2.13e-16 73.9
MS.gene02518.t1 AT2G23450 41.237 97 54 1 2 95 525 621 2.97e-14 67.8
MS.gene02518.t1 AT2G23450 41.237 97 54 1 2 95 525 621 2.97e-14 67.8
MS.gene02518.t1 AT5G28680 38.614 101 62 0 2 102 699 799 4.00e-14 67.4
MS.gene02518.t1 AT5G28680 38.614 101 62 0 2 102 699 799 4.00e-14 67.4
MS.gene02518.t1 AT2G28930 36.275 102 64 1 2 102 261 362 4.58e-14 67.4
MS.gene02518.t1 AT1G07570 38.947 95 57 1 2 95 141 235 5.00e-14 66.6
MS.gene02518.t1 AT2G28930 36.275 102 64 1 2 102 258 359 5.08e-14 67.0
MS.gene02518.t1 AT1G07570 38.947 95 57 1 2 95 257 351 6.28e-14 66.6
MS.gene02518.t1 AT1G07570 38.947 95 57 1 2 95 257 351 6.28e-14 66.6
MS.gene02518.t1 AT1G07570 38.947 95 57 1 2 95 257 351 6.28e-14 66.6
MS.gene02518.t1 AT1G07570 38.947 95 57 1 2 95 268 362 7.08e-14 66.6
MS.gene02518.t1 AT5G66790 36.275 102 62 1 2 100 495 596 9.96e-14 66.2
MS.gene02518.t1 AT2G28930 36.275 102 64 1 2 102 269 370 1.27e-13 65.9
MS.gene02518.t1 AT1G60800 33.684 95 62 1 3 96 482 576 2.41e-13 65.1
MS.gene02518.t1 AT1G60800 33.684 95 62 1 3 96 415 509 2.98e-13 65.1
MS.gene02518.t1 AT1G66880 38.384 99 58 1 2 97 1144 1242 3.06e-13 65.1
MS.gene02518.t1 AT1G01540 30.508 118 80 1 1 116 332 449 3.43e-13 64.7
MS.gene02518.t1 AT5G56460 37.255 102 63 1 2 102 263 364 4.42e-13 64.3
MS.gene02518.t1 AT1G66880 38.384 99 58 1 2 97 765 863 5.07e-13 64.3
MS.gene02518.t1 AT1G30570 37.624 101 63 0 2 102 698 798 6.24e-13 63.9
MS.gene02518.t1 AT1G67720 36.000 100 64 0 2 101 784 883 7.19e-13 63.9
MS.gene02518.t1 AT1G66880 38.384 99 58 1 2 97 523 621 7.21e-13 63.9
MS.gene02518.t1 AT4G39110 36.634 101 64 0 2 102 703 803 8.21e-13 63.9
MS.gene02518.t1 AT3G08760 33.333 96 63 1 1 95 358 453 1.63e-12 62.8
MS.gene02518.t1 AT3G08760 33.333 96 63 1 1 95 358 453 1.63e-12 62.8
MS.gene02518.t1 AT3G08760 33.333 96 63 1 1 95 358 453 1.63e-12 62.8
MS.gene02518.t1 AT5G58940 37.234 94 58 1 2 94 328 421 1.89e-12 62.8
MS.gene02518.t1 AT5G58940 37.234 94 58 1 2 94 328 421 1.89e-12 62.8
MS.gene02518.t1 AT5G58940 37.234 94 58 1 2 94 328 421 1.89e-12 62.8
MS.gene02518.t1 AT5G58940 37.234 94 58 1 2 94 328 421 1.89e-12 62.8
MS.gene02518.t1 AT5G38210 36.957 92 55 1 2 90 535 626 2.25e-12 62.4
MS.gene02518.t1 AT5G54380 36.634 101 64 0 2 102 688 788 2.36e-12 62.4
MS.gene02518.t1 AT4G01330 31.579 95 65 0 1 95 340 434 2.42e-12 62.4
MS.gene02518.t1 AT4G01330 31.579 95 65 0 1 95 340 434 2.77e-12 62.0
MS.gene02518.t1 AT5G01020 36.842 95 59 1 2 95 253 347 2.87e-12 62.0
MS.gene02518.t1 AT4G01330 31.579 95 65 0 1 95 340 434 2.88e-12 62.0
MS.gene02518.t1 AT1G55200 35.644 101 65 0 2 102 557 657 2.92e-12 62.0
MS.gene02518.t1 AT1G55200 35.644 101 65 0 2 102 557 657 2.92e-12 62.0
MS.gene02518.t1 AT1G55200 35.644 101 65 0 2 102 557 657 2.92e-12 62.0
MS.gene02518.t1 AT1G55200 35.644 101 65 0 2 102 557 657 2.92e-12 62.0
MS.gene02518.t1 AT1G61860 37.895 95 58 1 2 95 266 360 2.93e-12 62.0
MS.gene02518.t1 AT1G69910 39.000 100 54 2 2 94 520 619 3.56e-12 62.0
MS.gene02518.t1 AT5G38210 36.957 92 55 1 2 90 547 638 3.59e-12 62.0
MS.gene02518.t1 AT2G23200 34.000 100 66 0 2 101 666 765 3.90e-12 62.0
MS.gene02518.t1 AT2G21480 36.634 101 64 0 2 102 702 802 3.92e-12 62.0
MS.gene02518.t1 AT5G38210 36.957 92 55 1 2 90 529 620 4.10e-12 61.6
MS.gene02518.t1 AT5G56790 34.000 100 66 0 2 101 568 667 5.76e-12 61.2
MS.gene02518.t1 AT5G47850 39.394 99 58 1 2 98 635 733 7.71e-12 60.8
MS.gene02518.t1 AT1G61590 32.479 117 72 2 2 114 283 396 8.21e-12 60.8
MS.gene02518.t1 AT3G59420 32.990 97 63 1 2 98 695 789 8.37e-12 60.8
MS.gene02518.t1 AT3G01300 34.579 107 69 1 2 107 323 429 1.13e-11 60.5
MS.gene02518.t1 AT1G72540 37.255 102 63 1 2 102 268 369 1.32e-11 60.1
MS.gene02518.t1 AT5G62710 42.424 99 44 4 3 95 458 549 2.02e-11 59.7
MS.gene02518.t1 AT1G51890 33.913 115 73 2 2 115 770 882 2.04e-11 59.7
MS.gene02518.t1 AT5G62710 42.424 99 44 4 3 95 492 583 2.11e-11 59.7
MS.gene02518.t1 AT4G34500 31.579 95 65 0 1 95 325 419 2.16e-11 59.7
MS.gene02518.t1 AT1G51890 33.913 115 73 2 2 115 748 860 2.16e-11 59.7
MS.gene02518.t1 AT3G46290 33.663 101 67 0 2 102 663 763 2.31e-11 59.7
MS.gene02518.t1 AT5G48940 33.929 112 67 2 2 111 974 1080 2.33e-11 59.7
MS.gene02518.t1 AT3G28690 30.973 113 75 2 2 113 262 372 2.85e-11 59.3
MS.gene02518.t1 AT3G28690 30.973 113 75 2 2 113 313 423 2.88e-11 59.3
MS.gene02518.t1 AT3G28690 30.973 113 75 2 2 113 213 323 2.92e-11 59.3
MS.gene02518.t1 AT1G51890 33.913 115 73 2 2 115 684 796 3.14e-11 59.3
MS.gene02518.t1 AT2G48010 37.234 94 59 0 2 95 465 558 3.31e-11 59.3
MS.gene02518.t1 AT5G61350 33.043 115 74 1 2 116 708 819 3.47e-11 59.3
MS.gene02518.t1 AT2G20850 31.818 110 73 2 1 109 658 766 3.51e-11 58.9
MS.gene02518.t1 AT4G00330 34.021 97 63 1 2 97 303 399 3.94e-11 58.9
MS.gene02518.t1 AT4G00330 34.021 97 63 1 2 97 303 399 3.94e-11 58.9
MS.gene02518.t1 AT1G21590 33.333 105 68 1 2 106 588 690 4.06e-11 58.9
MS.gene02518.t1 AT5G15080 34.737 95 61 1 2 95 329 423 4.10e-11 58.9
MS.gene02518.t1 AT2G28940 35.922 103 63 3 2 102 293 394 4.43e-11 58.9
MS.gene02518.t1 AT1G21590 33.333 105 68 1 2 106 548 650 4.81e-11 58.5
MS.gene02518.t1 AT1G51890 33.913 115 73 2 2 115 476 588 5.16e-11 58.5
MS.gene02518.t1 AT2G28940 35.922 103 63 3 2 102 174 275 5.42e-11 58.5
MS.gene02518.t1 AT3G51550 37.624 101 63 0 2 102 715 815 6.00e-11 58.5
MS.gene02518.t1 AT3G24540 34.343 99 61 1 2 96 360 458 7.39e-11 58.2
MS.gene02518.t1 AT2G39110 31.579 95 64 1 2 95 279 373 7.86e-11 58.2
MS.gene02518.t1 AT3G13690 32.000 100 68 0 2 101 589 688 8.56e-11 58.2
MS.gene02518.t1 AT3G13690 32.000 100 68 0 2 101 589 688 8.56e-11 58.2
MS.gene02518.t1 AT3G13690 32.000 100 68 0 2 101 589 688 8.56e-11 58.2
MS.gene02518.t1 AT2G39110 31.579 95 64 1 2 95 264 358 8.69e-11 57.8

Find 22 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTGCAGAAAGGTGTTTA+AGG 0.218659 3.2:+75882889 MS.gene02518:CDS
TGGTTATGGAAGAGCATAAA+TGG 0.248635 3.2:+75882970 MS.gene02518:CDS
AAGAGTGATGTTTATAGCTT+TGG 0.306595 3.2:+75882690 MS.gene02518:CDS
ATTAGAGGGAATGTTGGTTA+TGG 0.347600 3.2:+75882956 MS.gene02518:CDS
TTGAGAGGCCAGAGGATGAT+AGG 0.352378 3.2:+75882757 MS.gene02518:CDS
ATTGCCACTTCTTTCATCTT+CGG 0.372472 3.2:-75882930 None:intergenic
AGAAGTGGCAATGGAATTAG+AGG 0.398839 3.2:+75882941 MS.gene02518:CDS
GGCAAATGTTGAGCAAATAA+AGG 0.412586 3.2:+75882857 MS.gene02518:CDS
CCAGAGGATGATAGGAGCCT+TGG 0.440676 3.2:+75882765 MS.gene02518:CDS
CCAAGGCTCCTATCATCCTC+TGG 0.483317 3.2:-75882765 None:intergenic
CGGTCGGTTACTTTATATTG+TGG 0.487109 3.2:+75882815 MS.gene02518:CDS
AATGGAATTAGAGGGAATGT+TGG 0.506297 3.2:+75882950 MS.gene02518:CDS
GTGTTTAAGGTTGAAGAGAG+AGG 0.530060 3.2:+75882902 MS.gene02518:CDS
GGTTATGGAAGAGCATAAAT+GGG 0.554143 3.2:+75882971 MS.gene02518:CDS
GAAGATGAAAGAAGTGGCAA+TGG 0.560721 3.2:+75882932 MS.gene02518:CDS
AAGTTGCTTACATTGCAGAA+AGG 0.594360 3.2:+75882880 MS.gene02518:CDS
TTTGTTTCATCACTGAAAGA+CGG 0.613341 3.2:+75882795 MS.gene02518:CDS
ATGAAACAAAGTACACTCCA+AGG 0.640522 3.2:-75882782 None:intergenic
AAGACCGAAGATGAAAGAAG+TGG 0.648344 3.2:+75882926 MS.gene02518:CDS
TTTCATCACTGAAAGACGGT+CGG 0.649620 3.2:+75882799 MS.gene02518:CDS
GGAGAAACAGATCAGAGATG+AGG 0.666244 3.2:+75882836 MS.gene02518:CDS
GAAGTGGCAATGGAATTAGA+GGG 0.688103 3.2:+75882942 MS.gene02518:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGAGTGATGTTTATAGCTT+TGG + chr3.2:75882690-75882709 MS.gene02518:CDS 30.0%
TTTGTTTCATCACTGAAAGA+CGG + chr3.2:75882795-75882814 MS.gene02518:CDS 30.0%
AAGTTGCTTACATTGCAGAA+AGG + chr3.2:75882880-75882899 MS.gene02518:CDS 35.0%
AATGGAATTAGAGGGAATGT+TGG + chr3.2:75882950-75882969 MS.gene02518:CDS 35.0%
ATGAAACAAAGTACACTCCA+AGG - chr3.2:75882785-75882804 None:intergenic 35.0%
GGCAAATGTTGAGCAAATAA+AGG + chr3.2:75882857-75882876 MS.gene02518:CDS 35.0%
! AGAGCTTTTGACAGAAAAGA+AGG + chr3.2:75882725-75882744 MS.gene02518:CDS 35.0%
! ATTAGAGGGAATGTTGGTTA+TGG + chr3.2:75882956-75882975 MS.gene02518:CDS 35.0%
! ATTGCCACTTCTTTCATCTT+CGG - chr3.2:75882933-75882952 None:intergenic 35.0%
! GGTTATGGAAGAGCATAAAT+GGG + chr3.2:75882971-75882990 MS.gene02518:CDS 35.0%
! TGGTTATGGAAGAGCATAAA+TGG + chr3.2:75882970-75882989 MS.gene02518:CDS 35.0%
!! ACATTGCAGAAAGGTGTTTA+AGG + chr3.2:75882889-75882908 MS.gene02518:CDS 35.0%
AAGACCGAAGATGAAAGAAG+TGG + chr3.2:75882926-75882945 MS.gene02518:CDS 40.0%
AGAAGTGGCAATGGAATTAG+AGG + chr3.2:75882941-75882960 MS.gene02518:CDS 40.0%
GAAGATGAAAGAAGTGGCAA+TGG + chr3.2:75882932-75882951 MS.gene02518:CDS 40.0%
GAAGTGGCAATGGAATTAGA+GGG + chr3.2:75882942-75882961 MS.gene02518:CDS 40.0%
TTTCATCACTGAAAGACGGT+CGG + chr3.2:75882799-75882818 MS.gene02518:CDS 40.0%
! AGAAGGCTTTCTCTTTTGAG+AGG + chr3.2:75882742-75882761 MS.gene02518:CDS 40.0%
! CGGTCGGTTACTTTATATTG+TGG + chr3.2:75882815-75882834 MS.gene02518:CDS 40.0%
! GTGTTTAAGGTTGAAGAGAG+AGG + chr3.2:75882902-75882921 MS.gene02518:CDS 40.0%
GGAGAAACAGATCAGAGATG+AGG + chr3.2:75882836-75882855 MS.gene02518:CDS 45.0%
!! TTTCTCTTTTGAGAGGCCAG+AGG + chr3.2:75882749-75882768 MS.gene02518:CDS 45.0%
TTGAGAGGCCAGAGGATGAT+AGG + chr3.2:75882757-75882776 MS.gene02518:CDS 50.0%
CCAAGGCTCCTATCATCCTC+TGG - chr3.2:75882768-75882787 None:intergenic 55.0%
CCAGAGGATGATAGGAGCCT+TGG + chr3.2:75882765-75882784 MS.gene02518:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 75882678 75883028 75882678 ID=MS.gene02518
chr3.2 mRNA 75882678 75883028 75882678 ID=MS.gene02518.t1;Parent=MS.gene02518
chr3.2 exon 75882678 75883028 75882678 ID=MS.gene02518.t1.exon1;Parent=MS.gene02518.t1
chr3.2 CDS 75882678 75883028 75882678 ID=cds.MS.gene02518.t1;Parent=MS.gene02518.t1
Gene Sequence

>MS.gene02518

ATGTTAACAGAAAAGAGTGATGTTTATAGCTTTGGAGTAGTTTTAGCAGAGCTTTTGACAGAAAAGAAGGCTTTCTCTTTTGAGAGGCCAGAGGATGATAGGAGCCTTGGAGTGTACTTTGTTTCATCACTGAAAGACGGTCGGTTACTTTATATTGTGGAGAAACAGATCAGAGATGAGGCAAATGTTGAGCAAATAAAGGAAGTTGCTTACATTGCAGAAAGGTGTTTAAGGTTGAAGAGAGAGGAAAGACCGAAGATGAAAGAAGTGGCAATGGAATTAGAGGGAATGTTGGTTATGGAAGAGCATAAATGGGCAAGTGACAATTTGTCTTTAGAAGAGAGTGAATAA
Protein sequence

>MS.gene02518.t1

MLTEKSDVYSFGVVLAELLTEKKAFSFERPEDDRSLGVYFVSSLKDGRLLYIVEKQIRDEANVEQIKEVAYIAERCLRLKREERPKMKEVAMELEGMLVMEEHKWASDNLSLEESE