Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025189.t1 | AFK49645.1 | 97.4 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 1.30E-124 | 455.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025189.t1 | Q93ZH2 | 47.6 | 185 | 89 | 4 | 26 | 206 | 129 | 309 | 1.6e-30 | 134.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025189.t1 | I3TAV3 | 97.4 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 9.5e-125 | 455.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene025189.t1 | TF | NF-YA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025189.t1 | MTR_2g041090 | 97.447 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 4.02e-174 | 478 |
MS.gene025189.t1 | MTR_8g019540 | 46.907 | 194 | 92 | 6 | 11 | 204 | 103 | 285 | 2.83e-44 | 151 |
MS.gene025189.t1 | MTR_2g099490 | 50.331 | 151 | 61 | 4 | 6 | 145 | 108 | 255 | 1.20e-38 | 137 |
MS.gene025189.t1 | MTR_2g099490 | 52.143 | 140 | 59 | 3 | 6 | 145 | 108 | 239 | 1.64e-37 | 134 |
MS.gene025189.t1 | MTR_3g061510 | 53.731 | 134 | 45 | 5 | 23 | 156 | 123 | 239 | 6.92e-36 | 129 |
MS.gene025189.t1 | MTR_3g061510 | 53.731 | 134 | 45 | 5 | 23 | 156 | 143 | 259 | 8.51e-36 | 130 |
MS.gene025189.t1 | MTR_8g037270 | 54.472 | 123 | 49 | 3 | 33 | 153 | 114 | 231 | 3.63e-35 | 127 |
MS.gene025189.t1 | MTR_2g030170 | 53.774 | 106 | 46 | 2 | 59 | 162 | 95 | 199 | 3.37e-30 | 111 |
MS.gene025189.t1 | MTR_2g030170 | 53.774 | 106 | 46 | 2 | 59 | 162 | 128 | 232 | 8.31e-30 | 111 |
MS.gene025189.t1 | MTR_1g056530 | 45.775 | 142 | 61 | 3 | 5 | 145 | 105 | 231 | 1.77e-29 | 112 |
MS.gene025189.t1 | MTR_7g106450 | 54.630 | 108 | 33 | 4 | 32 | 138 | 134 | 226 | 2.40e-28 | 109 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025189.t1 | AT1G72830 | 47.568 | 185 | 89 | 4 | 26 | 206 | 129 | 309 | 5.71e-42 | 145 |
MS.gene025189.t1 | AT1G72830 | 47.312 | 186 | 89 | 5 | 26 | 206 | 129 | 310 | 3.55e-40 | 141 |
MS.gene025189.t1 | AT1G54160 | 68.367 | 98 | 29 | 1 | 47 | 142 | 145 | 242 | 1.68e-38 | 136 |
MS.gene025189.t1 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.96e-38 | 136 |
MS.gene025189.t1 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.96e-38 | 136 |
MS.gene025189.t1 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.96e-38 | 136 |
MS.gene025189.t1 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.96e-38 | 136 |
MS.gene025189.t1 | AT3G14020 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 2.91e-35 | 127 |
MS.gene025189.t1 | AT3G14020 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 2.91e-35 | 127 |
MS.gene025189.t1 | AT1G30500 | 56.364 | 110 | 44 | 3 | 32 | 141 | 58 | 163 | 7.04e-34 | 120 |
MS.gene025189.t1 | AT1G30500 | 56.364 | 110 | 40 | 3 | 32 | 141 | 58 | 159 | 8.34e-34 | 120 |
MS.gene025189.t1 | AT2G34720 | 51.613 | 124 | 53 | 4 | 19 | 138 | 38 | 158 | 1.57e-33 | 120 |
MS.gene025189.t1 | AT2G34720 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 3.73e-33 | 118 |
MS.gene025189.t1 | AT2G34720 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 3.73e-33 | 118 |
MS.gene025189.t1 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 2.92e-32 | 119 |
MS.gene025189.t1 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 2.92e-32 | 119 |
MS.gene025189.t1 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.35e-32 | 118 |
MS.gene025189.t1 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.35e-32 | 118 |
MS.gene025189.t1 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.35e-32 | 118 |
MS.gene025189.t1 | AT3G20910 | 49.587 | 121 | 54 | 4 | 33 | 151 | 126 | 241 | 1.73e-30 | 115 |
MS.gene025189.t1 | AT1G72830 | 42.162 | 185 | 74 | 5 | 26 | 206 | 129 | 284 | 2.98e-28 | 109 |
MS.gene025189.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 5.04e-25 | 97.4 |
MS.gene025189.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 5.04e-25 | 97.4 |
MS.gene025189.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 69 | 141 | 1.26e-24 | 97.4 |
MS.gene025189.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.50e-24 | 98.6 |
MS.gene025189.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.50e-24 | 98.6 |
MS.gene025189.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.50e-24 | 98.6 |
MS.gene025189.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.50e-24 | 98.6 |
MS.gene025189.t1 | AT3G05690 | 49.123 | 114 | 37 | 4 | 29 | 137 | 102 | 199 | 5.13e-24 | 97.8 |
MS.gene025189.t1 | AT3G05690 | 49.123 | 114 | 37 | 4 | 29 | 137 | 139 | 236 | 9.61e-24 | 97.4 |
Find 50 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATCATTTGAGGCAACATT+TGG | 0.267754 | 2.4:-49264143 | None:intergenic |
TTTGTCGCTGGTTCACATTC+TGG | 0.272296 | 2.4:+49264729 | MS.gene025189:CDS |
CAGCCAGAGCACATGTTTCT+TGG | 0.297173 | 2.4:+49264888 | MS.gene025189:CDS |
CATGCTTTGAATAGAGTTAG+AGG | 0.318785 | 2.4:+49264654 | MS.gene025189:CDS |
CATCATTTGAGGCAACATTT+GGG | 0.363234 | 2.4:-49264142 | None:intergenic |
GAGCAATTGAACTCGGTATC+AGG | 0.378172 | 2.4:-49263828 | None:intergenic |
CCAAATGTTGCCTCAAATGA+TGG | 0.389646 | 2.4:+49264143 | MS.gene025189:CDS |
CCTAAAACTGAAACTGTTGC+TGG | 0.404257 | 2.4:-49264865 | None:intergenic |
TTGAATAGAGTTAGAGGATC+TGG | 0.407085 | 2.4:+49264660 | MS.gene025189:CDS |
TGCAGTGGAGGACTCGCATT+TGG | 0.418965 | 2.4:+49264945 | MS.gene025189:CDS |
CTCTATTCAAAGCATGTTTG+TGG | 0.437986 | 2.4:-49264647 | None:intergenic |
GCTGTTTGGTGCTTAGAAAT+CGG | 0.443184 | 2.4:-49264686 | None:intergenic |
TGGCGAGATTCGTGAAGATA+TGG | 0.445004 | 2.4:-49264627 | None:intergenic |
CCACTTGATCTTGCACAAGA+TGG | 0.459081 | 2.4:+49264192 | MS.gene025189:CDS |
ATTAGACTCTGAAAGCTGTT+TGG | 0.461146 | 2.4:-49264700 | None:intergenic |
GATGGAAGATATGTTATCTC+TGG | 0.468775 | 2.4:-49264814 | None:intergenic |
CACTTGATCTTGCACAAGAT+GGG | 0.471002 | 2.4:+49264193 | MS.gene025189:CDS |
AGCAACGCGCTTCTGTTGTC+CGG | 0.486636 | 2.4:+49264976 | MS.gene025189:CDS |
TCTTGGAAACTCTCCAAACA+TGG | 0.497227 | 2.4:+49264905 | MS.gene025189:CDS |
CCCTGACAACAATTATCAAA+AGG | 0.501288 | 2.4:+49264752 | MS.gene025189:CDS |
TTTCCAAGAAACATGTGCTC+TGG | 0.515589 | 2.4:-49264891 | None:intergenic |
GGATGATTCAAAGAGAGAAA+AGG | 0.526180 | 2.4:-49263807 | None:intergenic |
AAAGGAAGATCCTTCAGAGA+TGG | 0.545453 | 2.4:+49264770 | MS.gene025189:CDS |
CAAATGTTGCCTCAAATGAT+GGG | 0.557136 | 2.4:+49264144 | MS.gene025189:CDS |
AGTTGATCATAATCACTCAA+TGG | 0.558578 | 2.4:+49263854 | MS.gene025189:CDS |
TGATGACTTTCCATCTCTGA+AGG | 0.561649 | 2.4:-49264780 | None:intergenic |
CCGATCGGAACAACTTGTGA+TGG | 0.564255 | 2.4:-49264832 | None:intergenic |
GATGCTAATCCCATCATTTG+AGG | 0.565976 | 2.4:-49264153 | None:intergenic |
AAACACTTACAACAGCATGC+GGG | 0.571388 | 2.4:-49264018 | None:intergenic |
ATCATTTGAGGCAACATTTG+GGG | 0.571616 | 2.4:-49264141 | None:intergenic |
AAGTGGTAATGCAACTCTAG+TGG | 0.571902 | 2.4:-49264175 | None:intergenic |
CTTGGAAACTCTCCAAACAT+GGG | 0.573579 | 2.4:+49264906 | MS.gene025189:CDS |
TCTAATGCAGAATTTGTCGC+TGG | 0.580969 | 2.4:+49264717 | MS.gene025189:CDS |
GGAGGAGCACCACAATGCAG+TGG | 0.581886 | 2.4:+49264930 | MS.gene025189:CDS |
AGTGGAGGACTCGCATTTGG+CGG | 0.584913 | 2.4:+49264948 | MS.gene025189:CDS |
CCATCTTGTGCAAGATCAAG+TGG | 0.592935 | 2.4:-49264192 | None:intergenic |
CCATCACAAGTTGTTCCGAT+CGG | 0.593385 | 2.4:+49264832 | MS.gene025189:CDS |
TTGGAAACTCTCCAAACATG+GGG | 0.601862 | 2.4:+49264907 | MS.gene025189:CDS |
AATACCATGGTATACTGAGA+AGG | 0.610675 | 2.4:+49264238 | MS.gene025189:CDS |
AACACTTACAACAGCATGCG+GGG | 0.613676 | 2.4:-49264017 | None:intergenic |
AACTTGTGAGCAATTGAACT+CGG | 0.618219 | 2.4:-49263835 | None:intergenic |
GGAGCACCACAATGCAGTGG+AGG | 0.620324 | 2.4:+49264933 | MS.gene025189:CDS |
AAAACACTTACAACAGCATG+CGG | 0.630340 | 2.4:-49264019 | None:intergenic |
GTCAATGCAAAACAATACCA+TGG | 0.632585 | 2.4:+49264225 | MS.gene025189:CDS |
GGAAACTCTCCAAACATGGG+GGG | 0.636980 | 2.4:+49264909 | MS.gene025189:CDS |
AATAGAGTTAGAGGATCTGG+TGG | 0.657703 | 2.4:+49264663 | MS.gene025189:CDS |
GTCGCCTTCTCAGTATACCA+TGG | 0.679853 | 2.4:-49264242 | None:intergenic |
GCGAGTCCTCCACTGCATTG+TGG | 0.686798 | 2.4:-49264939 | None:intergenic |
TGGAAACTCTCCAAACATGG+GGG | 0.690180 | 2.4:+49264908 | MS.gene025189:CDS |
ACAATCACGAGCTAAGCTTG+AGG | 0.693616 | 2.4:+49264263 | MS.gene025189:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTAAACTATTCAATAAAAC+AGG | - | chr2.4:49264587-49264606 | None:intergenic | 20.0% |
! | AAAAAGTAAAGTTCAAAGCA+TGG | - | chr2.4:49264325-49264344 | None:intergenic | 25.0% |
! | AATTTCACCATGTAATAACA+TGG | - | chr2.4:49264541-49264560 | None:intergenic | 25.0% |
!! | CTACTAGTTTATATGCTATA+AGG | - | chr2.4:49264358-49264377 | None:intergenic | 25.0% |
!! | GATTTTATATAACCATCCAA+GGG | + | chr2.4:49264451-49264470 | MS.gene025189:intron | 25.0% |
!! | TGATTTTATATAACCATCCA+AGG | + | chr2.4:49264450-49264469 | MS.gene025189:intron | 25.0% |
!!! | GAACTTTACTTTTTTCATTC+AGG | + | chr2.4:49264331-49264350 | MS.gene025189:intron | 25.0% |
!!! | GGTGAAATTGTTATTTGAAA+GGG | + | chr2.4:49264552-49264571 | MS.gene025189:intron | 25.0% |
!!! | TGGTGAAATTGTTATTTGAA+AGG | + | chr2.4:49264551-49264570 | MS.gene025189:intron | 25.0% |
!!! | TGTTTTGCATTGACATAAAT+GGG | - | chr2.4:49264219-49264238 | None:intergenic | 25.0% |
!!! | TTGTTTTGCATTGACATAAA+TGG | - | chr2.4:49264220-49264239 | None:intergenic | 25.0% |
AACTACTTCGTTACTAAAAG+TGG | - | chr2.4:49263915-49263934 | None:intergenic | 30.0% | |
AGTTGATCATAATCACTCAA+TGG | + | chr2.4:49263854-49263873 | MS.gene025189:CDS | 30.0% | |
CAAAATGCCATGTTATTACA+TGG | + | chr2.4:49264531-49264550 | MS.gene025189:intron | 30.0% | |
GCAAAAATTGGATCACTATA+AGG | - | chr2.4:49263977-49263996 | None:intergenic | 30.0% | |
GTATGTGAAACTTCTGTATT+TGG | + | chr2.4:49263876-49263895 | MS.gene025189:intron | 30.0% | |
TTTCTCGTTACAATCTCAAA+AGG | - | chr2.4:49264426-49264445 | None:intergenic | 30.0% | |
! | TATAGTGATCCAATTTTTGC+TGG | + | chr2.4:49263977-49263996 | MS.gene025189:CDS | 30.0% |
!! | CCTTTTGATAATTGTTGTCA+GGG | - | chr2.4:49264755-49264774 | None:intergenic | 30.0% |
!! | TATTAGCACTTTTTGATGCT+TGG | + | chr2.4:49264074-49264093 | MS.gene025189:intron | 30.0% |
!! | TCCTTTTGATAATTGTTGTC+AGG | - | chr2.4:49264756-49264775 | None:intergenic | 30.0% |
!!! | TATGTTATCTCTGGTTTTTG+AGG | - | chr2.4:49264808-49264827 | None:intergenic | 30.0% |
AAAACACTTACAACAGCATG+CGG | - | chr2.4:49264022-49264041 | None:intergenic | 35.0% | |
AACTTGTGAGCAATTGAACT+CGG | - | chr2.4:49263838-49263857 | None:intergenic | 35.0% | |
AATACCATGGTATACTGAGA+AGG | + | chr2.4:49264238-49264257 | MS.gene025189:CDS | 35.0% | |
AATTCTACCACTTGTCATCA+CGG | - | chr2.4:49264492-49264511 | None:intergenic | 35.0% | |
ACTAACGAACCAGCAAAAAT+TGG | - | chr2.4:49263989-49264008 | None:intergenic | 35.0% | |
CAAATGTTGCCTCAAATGAT+GGG | + | chr2.4:49264144-49264163 | MS.gene025189:CDS | 35.0% | |
CCCTGACAACAATTATCAAA+AGG | + | chr2.4:49264752-49264771 | MS.gene025189:CDS | 35.0% | |
CTCTATTCAAAGCATGTTTG+TGG | - | chr2.4:49264650-49264669 | None:intergenic | 35.0% | |
GATGGAAGATATGTTATCTC+TGG | - | chr2.4:49264817-49264836 | None:intergenic | 35.0% | |
GGATGATTCAAAGAGAGAAA+AGG | - | chr2.4:49263810-49263829 | None:intergenic | 35.0% | |
GTCAATGCAAAACAATACCA+TGG | + | chr2.4:49264225-49264244 | MS.gene025189:CDS | 35.0% | |
TTGAATAGAGTTAGAGGATC+TGG | + | chr2.4:49264660-49264679 | MS.gene025189:CDS | 35.0% | |
! | ATCATTTGAGGCAACATTTG+GGG | - | chr2.4:49264144-49264163 | None:intergenic | 35.0% |
! | ATCTCAAAAGGTAAGAGTGT+AGG | - | chr2.4:49264414-49264433 | None:intergenic | 35.0% |
! | ATTAGACTCTGAAAGCTGTT+TGG | - | chr2.4:49264703-49264722 | None:intergenic | 35.0% |
! | CATCATTTGAGGCAACATTT+GGG | - | chr2.4:49264145-49264164 | None:intergenic | 35.0% |
! | CATGCTTTGAATAGAGTTAG+AGG | + | chr2.4:49264654-49264673 | MS.gene025189:CDS | 35.0% |
AAACACTTACAACAGCATGC+GGG | - | chr2.4:49264021-49264040 | None:intergenic | 40.0% | |
AAAGGAAGATCCTTCAGAGA+TGG | + | chr2.4:49264770-49264789 | MS.gene025189:CDS | 40.0% | |
AATAGAGTTAGAGGATCTGG+TGG | + | chr2.4:49264663-49264682 | MS.gene025189:CDS | 40.0% | |
ATTCTACCACTTGTCATCAC+GGG | - | chr2.4:49264491-49264510 | None:intergenic | 40.0% | |
CACTTGATCTTGCACAAGAT+GGG | + | chr2.4:49264193-49264212 | MS.gene025189:CDS | 40.0% | |
CCAAATGTTGCCTCAAATGA+TGG | + | chr2.4:49264143-49264162 | MS.gene025189:CDS | 40.0% | |
CCTAAAACTGAAACTGTTGC+TGG | - | chr2.4:49264868-49264887 | None:intergenic | 40.0% | |
CTTGGAAACTCTCCAAACAT+GGG | + | chr2.4:49264906-49264925 | MS.gene025189:CDS | 40.0% | |
GATGCTAATCCCATCATTTG+AGG | - | chr2.4:49264156-49264175 | None:intergenic | 40.0% | |
TCTAATGCAGAATTTGTCGC+TGG | + | chr2.4:49264717-49264736 | MS.gene025189:CDS | 40.0% | |
TCTTGGAAACTCTCCAAACA+TGG | + | chr2.4:49264905-49264924 | MS.gene025189:CDS | 40.0% | |
TGATGACTTTCCATCTCTGA+AGG | - | chr2.4:49264783-49264802 | None:intergenic | 40.0% | |
TTGGAAACTCTCCAAACATG+GGG | + | chr2.4:49264907-49264926 | MS.gene025189:CDS | 40.0% | |
TTTCCAAGAAACATGTGCTC+TGG | - | chr2.4:49264894-49264913 | None:intergenic | 40.0% | |
! | AAGTGGTAATGCAACTCTAG+TGG | - | chr2.4:49264178-49264197 | None:intergenic | 40.0% |
! | AGTTATTGTCGTCCGTTTTC+AGG | + | chr2.4:49263931-49263950 | MS.gene025189:intron | 40.0% |
! | CCAGCAACAGTTTCAGTTTT+AGG | + | chr2.4:49264865-49264884 | MS.gene025189:CDS | 40.0% |
! | CCATCATTTGAGGCAACATT+TGG | - | chr2.4:49264146-49264165 | None:intergenic | 40.0% |
! | GTAGCAAAGTTTTTCATGCG+TGG | + | chr2.4:49264374-49264393 | MS.gene025189:intron | 40.0% |
!! | GCTGTTTGGTGCTTAGAAAT+CGG | - | chr2.4:49264689-49264708 | None:intergenic | 40.0% |
AACACTTACAACAGCATGCG+GGG | - | chr2.4:49264020-49264039 | None:intergenic | 45.0% | |
ACAATCACGAGCTAAGCTTG+AGG | + | chr2.4:49264263-49264282 | MS.gene025189:CDS | 45.0% | |
CATGAGTCTGAGCCTGAAAA+CGG | - | chr2.4:49263946-49263965 | None:intergenic | 45.0% | |
CCACTTGATCTTGCACAAGA+TGG | + | chr2.4:49264192-49264211 | MS.gene025189:CDS | 45.0% | |
CCATCACAAGTTGTTCCGAT+CGG | + | chr2.4:49264832-49264851 | MS.gene025189:CDS | 45.0% | |
CCATCTTGTGCAAGATCAAG+TGG | - | chr2.4:49264195-49264214 | None:intergenic | 45.0% | |
GAGCAATTGAACTCGGTATC+AGG | - | chr2.4:49263831-49263850 | None:intergenic | 45.0% | |
GCTGGAAAAACATGTCCGAT+CGG | - | chr2.4:49264850-49264869 | None:intergenic | 45.0% | |
TAACCATCCAAGGGTGAACA+AGG | + | chr2.4:49264460-49264479 | MS.gene025189:intron | 45.0% | |
TGGAAACTCTCCAAACATGG+GGG | + | chr2.4:49264908-49264927 | MS.gene025189:CDS | 45.0% | |
TGGCGAGATTCGTGAAGATA+TGG | - | chr2.4:49264630-49264649 | None:intergenic | 45.0% | |
!! | TTTGTCGCTGGTTCACATTC+TGG | + | chr2.4:49264729-49264748 | MS.gene025189:CDS | 45.0% |
CAGCCAGAGCACATGTTTCT+TGG | + | chr2.4:49264888-49264907 | MS.gene025189:CDS | 50.0% | |
CCGATCGGAACAACTTGTGA+TGG | - | chr2.4:49264835-49264854 | None:intergenic | 50.0% | |
GAACCTTGTTCACCCTTGGA+TGG | - | chr2.4:49264466-49264485 | None:intergenic | 50.0% | |
GGAAACTCTCCAAACATGGG+GGG | + | chr2.4:49264909-49264928 | MS.gene025189:CDS | 50.0% | |
GTCGCCTTCTCAGTATACCA+TGG | - | chr2.4:49264245-49264264 | None:intergenic | 50.0% | |
AACTCTCCAAACATGGGGGG+AGG | + | chr2.4:49264912-49264931 | MS.gene025189:CDS | 55.0% | |
AGCAACGCGCTTCTGTTGTC+CGG | + | chr2.4:49264976-49264995 | MS.gene025189:CDS | 55.0% | |
AGTGGAGGACTCGCATTTGG+CGG | + | chr2.4:49264948-49264967 | MS.gene025189:CDS | 55.0% | |
CTACCACTTGTCATCACGGG+AGG | - | chr2.4:49264488-49264507 | None:intergenic | 55.0% | |
GGAGGAACCTTGTTCACCCT+TGG | - | chr2.4:49264470-49264489 | None:intergenic | 55.0% | |
GTTCCTCCCGTGATGACAAG+TGG | + | chr2.4:49264482-49264501 | MS.gene025189:intron | 55.0% | |
TGCAGTGGAGGACTCGCATT+TGG | + | chr2.4:49264945-49264964 | MS.gene025189:CDS | 55.0% | |
GCGAGTCCTCCACTGCATTG+TGG | - | chr2.4:49264942-49264961 | None:intergenic | 60.0% | |
! | GGAGCACCACAATGCAGTGG+AGG | + | chr2.4:49264933-49264952 | MS.gene025189:CDS | 60.0% |
!! | GGAGGAGCACCACAATGCAG+TGG | + | chr2.4:49264930-49264949 | MS.gene025189:CDS | 60.0% |
GGTGCTCCTCCCCCCATGTT+TGG | - | chr2.4:49264921-49264940 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 49263801 | 49265001 | 49263801 | ID=MS.gene025189 |
chr2.4 | mRNA | 49263801 | 49265001 | 49263801 | ID=MS.gene025189.t1;Parent=MS.gene025189 |
chr2.4 | exon | 49263801 | 49263875 | 49263801 | ID=MS.gene025189.t1.exon1;Parent=MS.gene025189.t1 |
chr2.4 | CDS | 49263801 | 49263875 | 49263801 | ID=cds.MS.gene025189.t1;Parent=MS.gene025189.t1 |
chr2.4 | exon | 49263953 | 49264030 | 49263953 | ID=MS.gene025189.t1.exon2;Parent=MS.gene025189.t1 |
chr2.4 | CDS | 49263953 | 49264030 | 49263953 | ID=cds.MS.gene025189.t1;Parent=MS.gene025189.t1 |
chr2.4 | exon | 49264135 | 49264314 | 49264135 | ID=MS.gene025189.t1.exon3;Parent=MS.gene025189.t1 |
chr2.4 | CDS | 49264135 | 49264314 | 49264135 | ID=cds.MS.gene025189.t1;Parent=MS.gene025189.t1 |
chr2.4 | exon | 49264627 | 49265001 | 49264627 | ID=MS.gene025189.t1.exon4;Parent=MS.gene025189.t1 |
chr2.4 | CDS | 49264627 | 49265001 | 49264627 | ID=cds.MS.gene025189.t1;Parent=MS.gene025189.t1 |
Gene Sequence |
Protein sequence |