AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025207

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025207.t1 MTR_2g041430 93.716 366 12 4 1 365 1 356 0.0 692
MS.gene025207.t1 MTR_2g041430 93.681 364 12 4 1 363 1 354 0.0 689
MS.gene025207.t1 MTR_2g041430 93.681 364 12 4 1 363 1 354 0.0 687
MS.gene025207.t1 MTR_4g125490 63.089 382 96 13 3 361 5 364 3.41e-143 413
MS.gene025207.t1 MTR_8g020560 45.797 345 161 11 3 334 7 338 1.31e-70 224
MS.gene025207.t1 MTR_0001s0490 40.227 353 143 13 7 348 25 320 3.55e-59 194
MS.gene025207.t1 MTR_1g017490 57.391 115 49 0 5 119 9 123 5.95e-41 151
MS.gene025207.t1 MTR_1g017490 57.391 115 49 0 5 119 142 256 1.08e-40 152
MS.gene025207.t1 MTR_5g027030 60.177 113 29 2 7 119 16 112 1.83e-40 145
MS.gene025207.t1 MTR_7g104050 54.198 131 45 4 4 125 68 192 2.37e-35 132
MS.gene025207.t1 MTR_7g104050 54.198 131 45 4 4 125 68 192 2.98e-35 133
MS.gene025207.t1 MTR_3g092330 48.246 114 37 3 7 120 113 204 2.33e-27 113
MS.gene025207.t1 MTR_8g035910 38.608 158 72 4 3 158 45 179 3.92e-23 100
MS.gene025207.t1 MTR_8g035910 47.761 67 34 1 75 140 297 363 1.01e-12 69.3
MS.gene025207.t1 MTR_8g035640 64.103 39 14 0 75 113 51 89 1.54e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025207.t1 AT3G13960 71.681 113 28 2 7 119 16 124 2.27e-55 186
MS.gene025207.t1 AT2G06200 65.000 120 35 2 5 117 4 123 2.21e-47 161
MS.gene025207.t1 AT2G06200 65.000 120 35 2 5 117 43 162 2.80e-47 162
MS.gene025207.t1 AT4G37740 58.974 117 40 4 5 120 162 271 2.43e-39 147
MS.gene025207.t1 AT2G36400 56.198 121 50 2 8 127 77 195 1.01e-36 137
MS.gene025207.t1 AT3G52910 55.172 116 44 4 8 119 83 194 1.93e-33 128
MS.gene025207.t1 AT2G22840 53.448 116 46 2 5 119 131 239 2.92e-33 130
MS.gene025207.t1 AT2G06200 92.157 51 2 1 69 117 1 51 3.18e-26 103
MS.gene025207.t1 AT5G53660 49.123 114 37 3 6 119 58 150 6.35e-26 107
MS.gene025207.t1 AT4G24150 44.444 117 55 2 8 119 112 223 1.72e-23 101
MS.gene025207.t1 AT4G24150 40.288 139 54 3 8 119 150 286 2.55e-23 101
MS.gene025207.t1 AT4G24150 44.444 117 55 2 8 119 150 261 2.57e-23 101
MS.gene025207.t1 AT2G45480 39.669 121 56 3 3 116 19 129 4.08e-18 84.3
MS.gene025207.t1 AT2G45480 39.669 121 56 3 3 116 17 127 1.84e-17 83.6
MS.gene025207.t1 AT2G45480 60.417 48 18 1 72 119 301 347 1.27e-12 68.9
MS.gene025207.t1 AT2G45480 39.669 121 56 3 3 116 19 129 2.09e-17 83.6
MS.gene025207.t1 AT2G45480 60.417 48 18 1 72 119 303 349 1.31e-12 68.9

Find 51 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAAGGATTGTTGCAAAT+TGG 0.210488 2.2:-46300723 None:intergenic
TGCCATTGTGATGGAGTAAA+AGG 0.243712 2.2:-46299551 None:intergenic
CTTTCACAGTATTTAGAATC+TGG 0.307376 2.2:-46300485 None:intergenic
ATTTACAAGTACATGGCTTC+TGG 0.322552 2.2:+46299596 MS.gene025207:CDS
GAGAGATCAATGGCTTGATT+TGG 0.343166 2.2:+46301795 MS.gene025207:CDS
CTCAGAATAACACTGATTAC+AGG 0.358203 2.2:+46300843 MS.gene025207:CDS
TTTGATGAATGGCCACATAA+AGG 0.368324 2.2:+46301772 MS.gene025207:CDS
AACTATCTGCAAATGGGTTT+AGG 0.375973 2.2:+46300386 MS.gene025207:CDS
GCATTCTTCAAAGAACCTTC+TGG 0.390445 2.2:+46301529 MS.gene025207:CDS
ATTAATAATGCTTCATCACT+TGG 0.397780 2.2:+46300590 MS.gene025207:CDS
TCAACTTTGTCATCTGGTAT+TGG 0.398620 2.2:+46300767 MS.gene025207:CDS
GAAGAACAGATGGAAAGAAA+TGG 0.403362 2.2:+46300441 MS.gene025207:CDS
TTGATGAATGGCCACATAAA+GGG 0.413091 2.2:+46301773 MS.gene025207:CDS
GAAGAATTAGTTAATGATGC+AGG 0.421290 2.2:-46300638 None:intergenic
TTCATCGCTTCTTTGATGAA+TGG 0.422547 2.2:+46301761 MS.gene025207:CDS
TCAAGGTCAACTTTGTCATC+TGG 0.430096 2.2:+46300761 MS.gene025207:CDS
TGTATCCTCATACAACTTCA+AGG 0.438634 2.2:+46300744 MS.gene025207:CDS
CAGTGTTGGTGTTGTTGACT+AGG 0.440991 2.2:-46299695 None:intergenic
CTTCTACATCTACCTGGCTC+TGG 0.445022 2.2:-46300422 None:intergenic
TGGATGGAACTATCTGCAAA+TGG 0.447963 2.2:+46300379 MS.gene025207:CDS
AAGCTTCTCTGCTACATCAA+TGG 0.459023 2.2:+46301567 MS.gene025207:CDS
TCGATTTCGATTCCATCCTC+TGG 0.461357 2.2:+46301844 MS.gene025207:CDS
CTTCCACAGGCTTTCTTGAA+CGG 0.472599 2.2:-46300529 None:intergenic
TATCCTCAAAATTCTTGCTA+TGG 0.474491 2.2:+46300698 MS.gene025207:CDS
CATTGATCTCTCCCTTTATG+TGG 0.488068 2.2:-46301784 None:intergenic
GTTGACCTTGAAGTTGTATG+AGG 0.489086 2.2:-46300749 None:intergenic
AAAAGGAACAGGTATGTGTA+TGG 0.489899 2.2:+46301481 MS.gene025207:intron
AGTTGTATGAGGATACATAA+AGG 0.504350 2.2:-46300738 None:intergenic
GTATTTCTAGAAGTGAAAGT+TGG 0.508645 2.2:-46301877 None:intergenic
GGATGGAACTATCTGCAAAT+GGG 0.512539 2.2:+46300380 MS.gene025207:CDS
AGCTCTTATTTACAAGTACA+TGG 0.521532 2.2:+46299589 MS.gene025207:CDS
CAAAGAAGTAGAAGATGATG+AGG 0.529690 2.2:-46301632 None:intergenic
CACATAAAGGGAGAGATCAA+TGG 0.535742 2.2:+46301785 MS.gene025207:CDS
CATCAATGGAACATGATCCT+TGG 0.541285 2.2:+46301581 MS.gene025207:CDS
GGTAGATGTAGAAGAACAGA+TGG 0.565829 2.2:+46300431 MS.gene025207:CDS
TCAAGTTCTTGCCATTGTGA+TGG 0.567945 2.2:-46299560 None:intergenic
AAGAATTAGTTAATGATGCA+GGG 0.570085 2.2:-46300637 None:intergenic
GTGAGTGGTGTTAGTTGCCA+AGG 0.572218 2.2:-46301598 None:intergenic
TCTGTTCTTCTACATCTACC+TGG 0.588963 2.2:-46300428 None:intergenic
GCTGCTTTGAGTGTTCACTA+AGG 0.590411 2.2:-46301711 None:intergenic
AGAGTTGCTATCAAGAAACA+AGG 0.594941 2.2:-46300816 None:intergenic
GGAAAATCATGACCAGAGGA+TGG 0.595251 2.2:-46301856 None:intergenic
TTCATAGTACTGCTACCAGA+AGG 0.597595 2.2:-46301544 None:intergenic
TTCACTTCTAGAAATACCCA+TGG 0.600872 2.2:+46301883 MS.gene025207:CDS
TGTGAAAGACACATGCATAG+AGG 0.603131 2.2:+46300500 MS.gene025207:CDS
GGAGAAAGGACTTACAGTGT+TGG 0.629687 2.2:-46299709 None:intergenic
AATCGAAATCGATAATTGAG+TGG 0.635985 2.2:-46301833 None:intergenic
AAACCGTTCAAGAAAGCCTG+TGG 0.641388 2.2:+46300526 MS.gene025207:CDS
AGTTGGAAAATCATGACCAG+AGG 0.663324 2.2:-46301860 None:intergenic
GAGTTGCTATCAAGAAACAA+GGG 0.701728 2.2:-46300815 None:intergenic
GAGGAAGAACTCATTGTGAG+TGG 0.715260 2.2:-46301613 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTTTAAACAAATT+TGG + chr2.2:46299937-46299956 MS.gene025207:intron 10.0%
!! AAAAGATTAATGAATATACA+AGG - chr2.2:46302135-46302154 None:intergenic 15.0%
!! ACAGTAAACATATAAATATA+TGG - chr2.2:46299733-46299752 None:intergenic 15.0%
!! TATAGAGATAATTTAGTTAA+AGG + chr2.2:46300285-46300304 MS.gene025207:intron 15.0%
!! AACTATGTATACATAGTTTA+TGG - chr2.2:46299769-46299788 None:intergenic 20.0%
!! ACATATAAATATATGGAGAA+AGG - chr2.2:46299726-46299745 None:intergenic 20.0%
!! GAAATTACAAAAAGAATCAA+CGG - chr2.2:46301318-46301337 None:intergenic 20.0%
!! GATACATTCAAAGAATATAA+TGG + chr2.2:46301338-46301357 MS.gene025207:intron 20.0%
!! TAAGATGTATACCATATAAA+AGG - chr2.2:46300076-46300095 None:intergenic 20.0%
!!! TTATTTTGGTTTTTTTCAGT+TGG + chr2.2:46300359-46300378 MS.gene025207:intron 20.0%
!!! TTTTGATAAATAGTCGTTTT+TGG + chr2.2:46300905-46300924 MS.gene025207:intron 20.0%
!!! TTTTTTGTTAGTTAGTTTGT+TGG + chr2.2:46301021-46301040 MS.gene025207:intron 20.0%
! AAAAAACCAAAATAACCCTT+TGG - chr2.2:46300354-46300373 None:intergenic 25.0%
! AAGAATTAGTTAATGATGCA+GGG - chr2.2:46300640-46300659 None:intergenic 25.0%
! ATTAATAATGCTTCATCACT+TGG + chr2.2:46300590-46300609 MS.gene025207:CDS 25.0%
! TACTAACTTCTTTACTATTG+TGG + chr2.2:46300185-46300204 MS.gene025207:intron 25.0%
! TATGAAAGTTCAATTACCAT+GGG - chr2.2:46301902-46301921 None:intergenic 25.0%
! TTTGAATTACTAACAAAGAC+AGG + chr2.2:46301052-46301071 MS.gene025207:intron 25.0%
!! ATAGTGTTTGAACTTTGTTT+CGG + chr2.2:46300880-46300899 MS.gene025207:intron 25.0%
!! CTTCAAGTAAATAGTCATTT+TGG + chr2.2:46301195-46301214 MS.gene025207:intron 25.0%
!! GAATTATGATTGATTCTCTT+TGG + chr2.2:46301444-46301463 MS.gene025207:intron 25.0%
!! TGGTTTTCTGTTTGTAAAAA+AGG + chr2.2:46301464-46301483 MS.gene025207:intron 25.0%
!!! AAGAATTTTGAGGATAGTTT+TGG - chr2.2:46300694-46300713 None:intergenic 25.0%
!!! TATACCATATAAAAGGTGTT+AGG - chr2.2:46300069-46300088 None:intergenic 25.0%
!!! TTTGGAGTAAATAGTCATTT+TGG + chr2.2:46300923-46300942 MS.gene025207:intron 25.0%
AATCGAAATCGATAATTGAG+TGG - chr2.2:46301836-46301855 None:intergenic 30.0%
AGTTGTATGAGGATACATAA+AGG - chr2.2:46300741-46300760 None:intergenic 30.0%
CACTCATTAAGAGATCAAAA+TGG + chr2.2:46301366-46301385 MS.gene025207:intron 30.0%
CATAAAGGATTGTTGCAAAT+TGG - chr2.2:46300726-46300745 None:intergenic 30.0%
CATAGAGATTCATATCCATT+CGG + chr2.2:46301918-46301937 MS.gene025207:intron 30.0%
CCATCTACAAAACAATATCA+AGG - chr2.2:46302233-46302252 None:intergenic 30.0%
CTATGAAAGTTCAATTACCA+TGG - chr2.2:46301903-46301922 None:intergenic 30.0%
GAAACAAAGTTCAAACACTA+TGG - chr2.2:46300881-46300900 None:intergenic 30.0%
GAAGAATTAGTTAATGATGC+AGG - chr2.2:46300641-46300660 None:intergenic 30.0%
TACCATCAGAAAAAGCTATT+TGG + chr2.2:46299646-46299665 MS.gene025207:CDS 30.0%
TATACATCTTAGTGTGTGTT+TGG + chr2.2:46300085-46300104 MS.gene025207:intron 30.0%
TATCCTCAAAATTCTTGCTA+TGG + chr2.2:46300698-46300717 MS.gene025207:CDS 30.0%
TCTGTTTGTAAAAAAGGAAC+AGG + chr2.2:46301470-46301489 MS.gene025207:intron 30.0%
TGACATTGTCTTACACATTT+CGG + chr2.2:46301118-46301137 MS.gene025207:intron 30.0%
TTGAAATTCATTAACCACCA+AGG - chr2.2:46302111-46302130 None:intergenic 30.0%
! AGCTCTTATTTACAAGTACA+TGG + chr2.2:46299589-46299608 MS.gene025207:CDS 30.0%
! ATGGTTAGTCATCATTTATC+AGG + chr2.2:46302033-46302052 MS.gene025207:intron 30.0%
! CTTTCACAGTATTTAGAATC+TGG - chr2.2:46300488-46300507 None:intergenic 30.0%
! TTCTTTGATAGTACTGTTCT+AGG + chr2.2:46301947-46301966 MS.gene025207:intron 30.0%
! TTTTGATCTCTTAATGAGTG+AGG - chr2.2:46301366-46301385 None:intergenic 30.0%
!! ATCCAAATAGCTTTTTCTGA+TGG - chr2.2:46299651-46299670 None:intergenic 30.0%
!! CCTTGATATTGTTTTGTAGA+TGG + chr2.2:46302230-46302249 MS.gene025207:intron 30.0%
!! GTATTTCTAGAAGTGAAAGT+TGG - chr2.2:46301880-46301899 None:intergenic 30.0%
!!! TCTTTTAGAAAGTGTCTGTT+TGG - chr2.2:46300256-46300275 None:intergenic 30.0%
!!! TTTGGTTTTTTTCAGTTGGA+TGG + chr2.2:46300363-46300382 MS.gene025207:intron 30.0%
AAAAGGAACAGGTATGTGTA+TGG + chr2.2:46301481-46301500 MS.gene025207:intron 35.0%
AAATGAGTCTCTTTGACCAA+AGG + chr2.2:46300335-46300354 MS.gene025207:intron 35.0%
AATGAGTCTCTTTGACCAAA+GGG + chr2.2:46300336-46300355 MS.gene025207:intron 35.0%
AGAGTTGCTATCAAGAAACA+AGG - chr2.2:46300819-46300838 None:intergenic 35.0%
ATCAAAGAAATTGAGCCGAA+TGG - chr2.2:46301936-46301955 None:intergenic 35.0%
ATGGTAAAAAGAAGATCAGG+TGG - chr2.2:46299632-46299651 None:intergenic 35.0%
ATTTACAAGTACATGGCTTC+TGG + chr2.2:46299596-46299615 MS.gene025207:CDS 35.0%
CAAAGAAGTAGAAGATGATG+AGG - chr2.2:46301635-46301654 None:intergenic 35.0%
CTGATGGTAAAAAGAAGATC+AGG - chr2.2:46299635-46299654 None:intergenic 35.0%
GAAGAACAGATGGAAAGAAA+TGG + chr2.2:46300441-46300460 MS.gene025207:CDS 35.0%
GAGTTGCTATCAAGAAACAA+GGG - chr2.2:46300818-46300837 None:intergenic 35.0%
GGAAAAAGTCTTGAAGAAAG+AGG - chr2.2:46299677-46299696 None:intergenic 35.0%
GTTTACAAAACGGTGTTTGA+TGG - chr2.2:46300227-46300246 None:intergenic 35.0%
TCAACTTTGTCATCTGGTAT+TGG + chr2.2:46300767-46300786 MS.gene025207:CDS 35.0%
TGTATCCTCATACAACTTCA+AGG + chr2.2:46300744-46300763 MS.gene025207:CDS 35.0%
TGTGTATGGACAAAAAGAAG+AGG + chr2.2:46301495-46301514 MS.gene025207:CDS 35.0%
TTACATCGTGAATTCGAACA+TGG + chr2.2:46302014-46302033 MS.gene025207:intron 35.0%
TTCATCGCTTCTTTGATGAA+TGG + chr2.2:46301761-46301780 MS.gene025207:CDS 35.0%
TTGATGAATGGCCACATAAA+GGG + chr2.2:46301773-46301792 MS.gene025207:CDS 35.0%
TTTGATGAATGGCCACATAA+AGG + chr2.2:46301772-46301791 MS.gene025207:CDS 35.0%
! AACTATCTGCAAATGGGTTT+AGG + chr2.2:46300386-46300405 MS.gene025207:CDS 35.0%
! CTCAGAATAACACTGATTAC+AGG + chr2.2:46300843-46300862 MS.gene025207:CDS 35.0%
! CTGACCTAACACCTTTTATA+TGG + chr2.2:46300062-46300081 MS.gene025207:intron 35.0%
! CTTTGACCAAAGGGTTATTT+TGG + chr2.2:46300345-46300364 MS.gene025207:intron 35.0%
! GAACCATAGCAAGAATTTTG+AGG - chr2.2:46300704-46300723 None:intergenic 35.0%
! TCGGAAGTTAGTTTGGTAAT+CGG + chr2.2:46301234-46301253 MS.gene025207:intron 35.0%
! TGGTTTGTAGATGTGTAACT+CGG + chr2.2:46301215-46301234 MS.gene025207:intron 35.0%
! TTCACTTCTAGAAATACCCA+TGG + chr2.2:46301883-46301902 MS.gene025207:CDS 35.0%
! TTCCTTTTACTCCATCACAA+TGG + chr2.2:46299549-46299568 MS.gene025207:CDS 35.0%
!! TAATGATGCAGGGCTATTTT+TGG - chr2.2:46300630-46300649 None:intergenic 35.0%
!! TAGAAAGTGTCTGTTTGGTA+CGG - chr2.2:46300251-46300270 None:intergenic 35.0%
!! TATAAAAGGTGTTAGGTCAG+TGG - chr2.2:46300062-46300081 None:intergenic 35.0%
!!! GTAGTTTTAACAACTTCCAC+AGG - chr2.2:46300545-46300564 None:intergenic 35.0%
AAGCTTCTCTGCTACATCAA+TGG + chr2.2:46301567-46301586 MS.gene025207:CDS 40.0%
ACGGTGTTTGATGGAAATCA+CGG - chr2.2:46300218-46300237 None:intergenic 40.0%
ACTTTACTAGCCACGATTCT+CGG - chr2.2:46302086-46302105 None:intergenic 40.0%
AGAAAAATAGATCCAGAGCC+AGG + chr2.2:46300410-46300429 MS.gene025207:CDS 40.0%
AGTTGGAAAATCATGACCAG+AGG - chr2.2:46301863-46301882 None:intergenic 40.0%
CACATAAAGGGAGAGATCAA+TGG + chr2.2:46301785-46301804 MS.gene025207:CDS 40.0%
CATCAATGGAACATGATCCT+TGG + chr2.2:46301581-46301600 MS.gene025207:CDS 40.0%
CATTGATCTCTCCCTTTATG+TGG - chr2.2:46301787-46301806 None:intergenic 40.0%
GAGAGATCAATGGCTTGATT+TGG + chr2.2:46301795-46301814 MS.gene025207:CDS 40.0%
GCATTCTTCAAAGAACCTTC+TGG + chr2.2:46301529-46301548 MS.gene025207:CDS 40.0%
GCTTCACTGCAAAAATGACA+TGG - chr2.2:46300971-46300990 None:intergenic 40.0%
GGATGGAACTATCTGCAAAT+GGG + chr2.2:46300380-46300399 MS.gene025207:CDS 40.0%
GGTAGATGTAGAAGAACAGA+TGG + chr2.2:46300431-46300450 MS.gene025207:CDS 40.0%
GTGTAACTCGGAAGTTAGTT+TGG + chr2.2:46301227-46301246 MS.gene025207:intron 40.0%
GTTGACCTTGAAGTTGTATG+AGG - chr2.2:46300752-46300771 None:intergenic 40.0%
TCAAGGTCAACTTTGTCATC+TGG + chr2.2:46300761-46300780 MS.gene025207:CDS 40.0%
TCAAGTTCTTGCCATTGTGA+TGG - chr2.2:46299563-46299582 None:intergenic 40.0%
TCTGTTCTTCTACATCTACC+TGG - chr2.2:46300431-46300450 None:intergenic 40.0%
TGGATGGAACTATCTGCAAA+TGG + chr2.2:46300379-46300398 MS.gene025207:CDS 40.0%
TGTGAAAGACACATGCATAG+AGG + chr2.2:46300500-46300519 MS.gene025207:CDS 40.0%
TTCATAGTACTGCTACCAGA+AGG - chr2.2:46301547-46301566 None:intergenic 40.0%
TTGGTACGGCGTTTACAAAA+CGG - chr2.2:46300237-46300256 None:intergenic 40.0%
TTTCGCGACAATTCTGTAAG+TGG - chr2.2:46302185-46302204 None:intergenic 40.0%
! AAGCGATGAACAGTTTTCTG+AGG - chr2.2:46301751-46301770 None:intergenic 40.0%
! TGCCATTGTGATGGAGTAAA+AGG - chr2.2:46299554-46299573 None:intergenic 40.0%
AAACCGTTCAAGAAAGCCTG+TGG + chr2.2:46300526-46300545 MS.gene025207:CDS 45.0%
ATTTGAACACCCGAGAATCG+TGG + chr2.2:46302073-46302092 MS.gene025207:intron 45.0%
CGTGGCTAGTAAAGTTACCT+TGG + chr2.2:46302091-46302110 MS.gene025207:intron 45.0%
CTTCCACAGGCTTTCTTGAA+CGG - chr2.2:46300532-46300551 None:intergenic 45.0%
CTTTACTAGCCACGATTCTC+GGG - chr2.2:46302085-46302104 None:intergenic 45.0%
GAGGAAGAACTCATTGTGAG+TGG - chr2.2:46301616-46301635 None:intergenic 45.0%
GGAAAATCATGACCAGAGGA+TGG - chr2.2:46301859-46301878 None:intergenic 45.0%
GGAGAAAGGACTTACAGTGT+TGG - chr2.2:46299712-46299731 None:intergenic 45.0%
GGCTAGTAAAGTTACCTTGG+TGG + chr2.2:46302094-46302113 MS.gene025207:intron 45.0%
TCGATTTCGATTCCATCCTC+TGG + chr2.2:46301844-46301863 MS.gene025207:CDS 45.0%
! GCTGCTTTGAGTGTTCACTA+AGG - chr2.2:46301714-46301733 None:intergenic 45.0%
! TGAGACAGAGAAGCTTTTCG+AGG + chr2.2:46301653-46301672 MS.gene025207:CDS 45.0%
!! CAGTGTTGGTGTTGTTGACT+AGG - chr2.2:46299698-46299717 None:intergenic 45.0%
!!! TCTTTTTTAAAAAATTAAAA+AGG - chr2.2:46299835-46299854 None:intergenic 5.0%
CTTCTACATCTACCTGGCTC+TGG - chr2.2:46300425-46300444 None:intergenic 50.0%
! GTGAGTGGTGTTAGTTGCCA+AGG - chr2.2:46301601-46301620 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 46299533 46302256 46299533 ID=MS.gene025207
chr2.2 mRNA 46299533 46302256 46299533 ID=MS.gene025207.t1;Parent=MS.gene025207
chr2.2 exon 46299533 46299716 46299533 ID=MS.gene025207.t1.exon1;Parent=MS.gene025207.t1
chr2.2 CDS 46299533 46299716 46299533 ID=cds.MS.gene025207.t1;Parent=MS.gene025207.t1
chr2.2 exon 46300378 46300864 46300378 ID=MS.gene025207.t1.exon2;Parent=MS.gene025207.t1
chr2.2 CDS 46300378 46300864 46300378 ID=cds.MS.gene025207.t1;Parent=MS.gene025207.t1
chr2.2 exon 46301486 46301904 46301486 ID=MS.gene025207.t1.exon3;Parent=MS.gene025207.t1
chr2.2 CDS 46301486 46301904 46301486 ID=cds.MS.gene025207.t1;Parent=MS.gene025207.t1
chr2.2 exon 46302249 46302256 46302249 ID=MS.gene025207.t1.exon4;Parent=MS.gene025207.t1
chr2.2 CDS 46302249 46302256 46302249 ID=cds.MS.gene025207.t1;Parent=MS.gene025207.t1
Gene Sequence

>MS.gene025207

ATGAACAAGAACAAGTTTCCTTTTACTCCATCACAATGGCAAGAACTTGAACATCAAGCTCTTATTTACAAGTACATGGCTTCTGGTATATCTATTCCACCTGATCTTCTTTTTACCATCAGAAAAAGCTATTTGGATTCTCCTCTTTCTTCAAGACTTTTTCCTAGTCAACAACACCAACACTGTAAGTCCTTTCTCCATATATTTATATGTTTACTGTTAAGAGTTTAACTCCATAAACTATGTATACATAGTTCAAATAGTTCAAATCTTTATGTAGTCAATTAATAATAATTTTTCCTTTTTAATTTTTTAAAAAAGAACTCTTCTAAAATGAACAGTTTAATTTAGATTATAAATAAATAAAATTATTAGTAATAATAACTGTTCATAATTTGATTAATAGTTTTTTTTTAAACAAATTTGGAAAGTAGAAATTATTTTATTTATAAAAGTGATATTAATGATTATTTTACGACGATCTTTAAAAAGATTTGAACTCTTTGATTAATATCTCAAACTCATACCACTGACCTAACACCTTTTATATGGTATACATCTTAGTGTGTGTTTGGTTATCAGTTTGCAACACACAAAAGCAAGTTTGCACATTTTTTGATGTGTTTTTGCTGTGATTTTCAGAAACTACAAATACTAACTTCTTTACTATTGTGGTTTTTTGCCGTGATTTCCATCAAACACCGTTTTGTAAACGCCGTACCAAACAGACACTTTCTAAAAGATTATGAATGTATAGAGATAATTTAGTTAAAGGAGTGAAATTATTGTCTCAAGTGTCACAAAATGAGTCTCTTTGACCAAAGGGTTATTTTGGTTTTTTTCAGTTGGATGGAACTATCTGCAAATGGGTTTAGGAAGAAAAATAGATCCAGAGCCAGGTAGATGTAGAAGAACAGATGGAAAGAAATGGAGATGTTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAAAGACACATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTGTTAAAACTACAACAACAACAACAACAAATACAAATATTAATAATGCTTCATCACTTGGAATTTCATCACTTACCAAAAATAGCCCTGCATCATTAACTAATTCTTCTTCTTTGTCTTTTGAGACTCAACAACATCACCAAAACTATCCTCAAAATTCTTGCTATGGTTCCAATTTGCAACAATCCTTTATGTATCCTCATACAACTTCAAGGTCAACTTTGTCATCTGGTATTGGTTTGTCTTTTGAAGACAATAGTGCTCCCTTGTTTCTTGATAGCAACTCTTGCTCTCAGAATAACACTGATTACAGGTTTGTCTTGAAACCATAGTGTTTGAACTTTGTTTCGGTGTTTTGATAAATAGTCGTTTTTGGAGTAAATAGTCATTTTGGTATTTGAACGTGTATGTCAGTGCCATGTCATTTTTGCAGTGAAGCATAACAAAATTACAAAAACATATGAATATTTTTTTTGTTAGTTAGTTTGTTGGATGTGTCTTTTGAATTACTAACAAAGACAGGCTCGACGATATTTCTGTAATTTCGATACATTAAGAGATTATGATGACATTGTCTTACACATTTCGGTACTAAAATGATTGTTGACTCAAATTTTTTGATAAATATATGACTGCAATATGACTTCAAGTAAATAGTCATTTTGGTTTGTAGATGTGTAACTCGGAAGTTAGTTTGGTAATCGGACGTGTTACGTGTTCTCTGTAAGTCAGTTTGTCTTGAATTTAAAAATATAAGACACGTCCGTTGATTCTTTTTGTAATTTCGATACATTCAAAGAATATAATGGCACCTCACTCATTAAGAGATCAAAATGGCTATTTACTCACAAGATTATGATTGAGACTATGATCTTTAATCTCAAATGTTTGTGAATTATGATTGATTCTCTTTGGTTTTCTGTTTGTAAAAAAGGAACAGGTATGTGTATGGACAAAAAGAAGAGGTTGATGAGTATGCATTCTTCAAAGAACCTTCTGGTAGCAGTACTATGAAAAGCTTCTCTGCTACATCAATGGAACATGATCCTTGGCAACTAACACCACTCACAATGAGTTCTTCCTCATCATCTTCTACTTCTTTGAGACAGAGAAGCTTTTCGAGGTTGTCGAATGATTACTCTTGCTTGCAACTTCAGAGCCTTAGTGAACACTCAAAGCAGCATGAGCAAGATGAACCTCAGAAAACTGTTCATCGCTTCTTTGATGAATGGCCACATAAAGGGAGAGATCAATGGCTTGATTTGGATGATAAATCATCTACCACTCAATTATCGATTTCGATTCCATCCTCTGGTCATGATTTTCCAACTTTCACTTCTAGAAATACCCATGGTAATTGAACTTTCATAGAGATTCATATCCATTCGGCTCAATTTCTTTGATAGTACTGTTCTAGGTTTTAAATCATGTTGCAGTTACATCACGATTCTTGATATTGCACTTACATCGTGAATTCGAACATGGTTAGTCATCATTTATCAGGTGTTCAACTACAAGTTGATTTGAACACCCGAGAATCGTGGCTAGTAAAGTTACCTTGGTGGTTAATGAATTTCAAACCTTGTATATTCATTAATCTTTTACAAGACAATTATCTAATCTATGTTAGCCACTTACAGAATTGTCGCGAAAGTTGTCGACAATTGTTTCTCTAAAACCTTGATATTGTTTTGTAGATGGTTGA
Protein sequence

>MS.gene025207.t1

MNKNKFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIRKSYLDSPLSSRLFPSQQHQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVVKTTTTTTTNTNINNASSLGISSLTKNSPASLTNSSSLSFETQQHHQNYPQNSCYGSNLQQSFMYPHTTSRSTLSSGIGLSFEDNSAPLFLDSNSCSQNNTDYRNRYVYGQKEEVDEYAFFKEPSGSSTMKSFSATSMEHDPWQLTPLTMSSSSSSSTSLRQRSFSRLSNDYSCLQLQSLSEHSKQHEQDEPQKTVHRFFDEWPHKGRDQWLDLDDKSSTTQLSISIPSSGHDFPTFTSRNTHDG