Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025418.t1 | XP_024632767.1 | 81.9 | 271 | 29 | 4 | 1 | 255 | 1 | 267 | 1.00E-106 | 396.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025418.t1 | P23922 | 42.5 | 73 | 42 | 0 | 170 | 242 | 252 | 324 | 6.1e-07 | 56.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025418.t1 | G7ISU2 | 80.4 | 275 | 30 | 4 | 1 | 255 | 1 | 271 | 1.8e-105 | 391.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene025418.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025418.t1 | MTR_2g045700 | 80.364 | 275 | 30 | 4 | 1 | 255 | 1 | 271 | 7.44e-152 | 424 |
MS.gene025418.t1 | MTR_2g045670 | 70.229 | 262 | 71 | 3 | 1 | 255 | 20 | 281 | 5.22e-122 | 349 |
MS.gene025418.t1 | MTR_2g045630 | 72.917 | 240 | 47 | 3 | 29 | 254 | 42 | 277 | 6.50e-115 | 331 |
MS.gene025418.t1 | MTR_1g034500 | 60.841 | 309 | 65 | 8 | 1 | 255 | 1 | 307 | 7.00e-113 | 327 |
MS.gene025418.t1 | MTR_8g077950 | 47.500 | 80 | 42 | 0 | 170 | 249 | 258 | 337 | 3.23e-18 | 82.8 |
MS.gene025418.t1 | MTR_8g077950 | 47.500 | 80 | 42 | 0 | 170 | 249 | 260 | 339 | 3.77e-18 | 82.8 |
MS.gene025418.t1 | MTR_8g077950 | 47.500 | 80 | 42 | 0 | 170 | 249 | 200 | 279 | 3.87e-18 | 82.0 |
MS.gene025418.t1 | MTR_5g028850 | 38.542 | 96 | 57 | 2 | 148 | 242 | 284 | 378 | 1.10e-12 | 67.4 |
MS.gene025418.t1 | MTR_5g028850 | 38.542 | 96 | 57 | 2 | 148 | 242 | 286 | 380 | 1.10e-12 | 67.4 |
MS.gene025418.t1 | MTR_8g070820 | 34.783 | 92 | 60 | 0 | 146 | 237 | 257 | 348 | 2.21e-11 | 63.5 |
MS.gene025418.t1 | MTR_8g070820 | 39.241 | 79 | 47 | 1 | 160 | 237 | 296 | 374 | 2.42e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025418.t1 | AT4G36730 | 46.250 | 80 | 43 | 0 | 170 | 249 | 220 | 299 | 7.23e-17 | 79.0 |
MS.gene025418.t1 | AT4G36730 | 46.250 | 80 | 43 | 0 | 170 | 249 | 222 | 301 | 7.30e-17 | 79.0 |
MS.gene025418.t1 | AT2G35530 | 42.857 | 77 | 43 | 1 | 162 | 237 | 296 | 372 | 1.35e-13 | 70.1 |
MS.gene025418.t1 | AT1G32150 | 43.750 | 64 | 36 | 0 | 170 | 233 | 295 | 358 | 9.64e-11 | 61.6 |
Find 48 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTGGGCTGGGTCAGAATT+TGG | 0.147766 | 2.2:+41620265 | MS.gene025418:CDS |
GCAAATAATTTGTTGAAATC+TGG | 0.194573 | 2.2:-41619480 | None:intergenic |
TCTGGGCTGGGTCAGAATTT+GGG | 0.213477 | 2.2:+41620266 | MS.gene025418:CDS |
CTTCTGCATCAAAACATAAT+AGG | 0.230110 | 2.2:+41619565 | MS.gene025418:CDS |
CATTGAAGTAGTGCAATATT+TGG | 0.230581 | 2.2:-41619110 | None:intergenic |
AAACACTCGCTGAGCTTTCT+AGG | 0.255804 | 2.2:+41620991 | MS.gene025418:CDS |
CAGAGATCTAACATGATTAT+TGG | 0.278706 | 2.2:+41620127 | MS.gene025418:CDS |
CTCTGCTACATGAGGATTAT+AGG | 0.310651 | 2.2:-41619162 | None:intergenic |
AAATAAGAAAAGAAAGAAAA+AGG | 0.331181 | 2.2:+41620776 | MS.gene025418:CDS |
TTCTTTGTAGAAAATCCATC+TGG | 0.342852 | 2.2:+41620248 | MS.gene025418:intron |
CAAATAATTTGTTGAAATCT+GGG | 0.364865 | 2.2:-41619479 | None:intergenic |
AGGATTATAGGAGAGCTCTA+TGG | 0.365834 | 2.2:-41619150 | None:intergenic |
GAAGAGCTAGTTAAAGAGTA+TGG | 0.380462 | 2.2:+41621324 | MS.gene025418:CDS |
AATAGATCTGCAACCAATTC+TGG | 0.383766 | 2.2:-41621348 | None:intergenic |
GCTCAGCGAGTGTTTGTGTT+AGG | 0.391881 | 2.2:-41620983 | None:intergenic |
TTCTGCATCAAAACATAATA+GGG | 0.394063 | 2.2:+41619566 | MS.gene025418:CDS |
TCTTGATGCTCAACTAAAAC+TGG | 0.396539 | 2.2:+41620322 | MS.gene025418:CDS |
GATCTCTGCTTCATACTTGA+AGG | 0.401624 | 2.2:-41620112 | None:intergenic |
TAAAGAGTATGGACCAGAAT+TGG | 0.406806 | 2.2:+41621335 | MS.gene025418:CDS |
GAATTTGGGGACAGTTGTTA+AGG | 0.407905 | 2.2:+41620280 | MS.gene025418:CDS |
TGGCAGACCTTACAATTTCT+CGG | 0.413188 | 2.2:+41618970 | MS.gene025418:CDS |
GTTTATCTGCGCAGGGCGGC+TGG | 0.415010 | 2.2:+41619671 | MS.gene025418:intron |
CCAGTAATTAAACTTAAAAC+AGG | 0.417895 | 2.2:-41619516 | None:intergenic |
AAGATCAAAGATAAGGAAAC+AGG | 0.427615 | 2.2:+41620822 | MS.gene025418:CDS |
AAGAAAGAATCCAATCCATT+TGG | 0.432707 | 2.2:+41618950 | MS.gene025418:CDS |
TCTGCGTACCATTTCTGAAA+AGG | 0.446864 | 2.2:-41619451 | None:intergenic |
TGTAGAAAATCCATCTGGGC+TGG | 0.452613 | 2.2:+41620253 | MS.gene025418:intron |
CTGGGCTGGGTCAGAATTTG+GGG | 0.465599 | 2.2:+41620267 | MS.gene025418:CDS |
GTAAGGTCTGCCAAATGGAT+TGG | 0.472361 | 2.2:-41618960 | None:intergenic |
CGGCTAAAAGATCAAAGATA+AGG | 0.476540 | 2.2:+41620815 | MS.gene025418:CDS |
AAGGCTGTCAAACAGGAAAT+CGG | 0.480160 | 2.2:+41620795 | MS.gene025418:CDS |
TGAGCTTTCTAGGAAATGTC+TGG | 0.515005 | 2.2:+41621001 | MS.gene025418:CDS |
GTAGAAAATCCATCTGGGCT+GGG | 0.520703 | 2.2:+41620254 | MS.gene025418:intron |
AAATTGTAAGGTCTGCCAAA+TGG | 0.525325 | 2.2:-41618965 | None:intergenic |
AAATTCTGACCCAGCCCAGA+TGG | 0.526322 | 2.2:-41620263 | None:intergenic |
TATCTGCGCAGGGCGGCTGG+TGG | 0.532947 | 2.2:+41619674 | MS.gene025418:intron |
GGATTATAGGAGAGCTCTAT+GGG | 0.536305 | 2.2:-41619149 | None:intergenic |
AGCGGCGCCGAGAAATTGTA+AGG | 0.545305 | 2.2:-41618977 | None:intergenic |
AGCGAGTGTTTGTGTTAGGA+CGG | 0.551336 | 2.2:-41620979 | None:intergenic |
GCATCAAAACATAATAGGGA+TGG | 0.558193 | 2.2:+41619570 | MS.gene025418:CDS |
TCTAACATGATTATTGGTGA+TGG | 0.571130 | 2.2:+41620133 | MS.gene025418:CDS |
CAATGAAAACAATTCTATTG+TGG | 0.574707 | 2.2:+41621031 | MS.gene025418:CDS |
TCTTTGTAGAAAATCCATCT+GGG | 0.584157 | 2.2:+41620249 | MS.gene025418:intron |
CTATAATCCTCATGTAGCAG+AGG | 0.606649 | 2.2:+41619163 | MS.gene025418:CDS |
CGACCCACCTCTGCTACATG+AGG | 0.618025 | 2.2:-41619170 | None:intergenic |
GGAAGTAAGAGATCAACAGA+TGG | 0.635178 | 2.2:+41619695 | MS.gene025418:CDS |
CATGATTTACTGACATCTAG+CGG | 0.690857 | 2.2:-41618995 | None:intergenic |
ATAGGGATGGAACTTCAATG+AGG | 0.746306 | 2.2:+41619583 | MS.gene025418:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAAGAAAAGAAAGAAAA+AGG | + | chr2.2:41620776-41620795 | MS.gene025418:CDS | 15.0% |
!! | ATAAATACTATAAAAGAAGA+TGG | - | chr2.2:41621170-41621189 | None:intergenic | 15.0% |
!! | TATAGTTAGTATATATTTAG+TGG | + | chr2.2:41619261-41619280 | MS.gene025418:intron | 15.0% |
!! | TTTCACTATTAATTAAGAAA+AGG | + | chr2.2:41621144-41621163 | MS.gene025418:intron | 15.0% |
!!! | ATAAAAATGTTTATGCATTT+TGG | + | chr2.2:41619411-41619430 | MS.gene025418:intron | 15.0% |
!!! | TGGATTTTCATATTTTTTTA+GGG | + | chr2.2:41619281-41619300 | MS.gene025418:intron | 15.0% |
!!! | TTAAAATTTTTCTTTAGTAC+AGG | + | chr2.2:41620046-41620065 | MS.gene025418:intron | 15.0% |
!! | AAATTAACGTAATAAAAGAC+TGG | - | chr2.2:41620427-41620446 | None:intergenic | 20.0% |
!! | AATTATATTCTACTACGATA+TGG | - | chr2.2:41620567-41620586 | None:intergenic | 20.0% |
!! | ATAATTGAACAAAGAAGAAA+GGG | - | chr2.2:41621072-41621091 | None:intergenic | 20.0% |
!! | TATAATTGAACAAAGAAGAA+AGG | - | chr2.2:41621073-41621092 | None:intergenic | 20.0% |
!!! | CAAATAATTTGTTGAAATCT+GGG | - | chr2.2:41619482-41619501 | None:intergenic | 20.0% |
!!! | GGATTTTCATATTTTTTTAG+GGG | + | chr2.2:41619282-41619301 | MS.gene025418:intron | 20.0% |
!!! | GTGGATTTTCATATTTTTTT+AGG | + | chr2.2:41619280-41619299 | MS.gene025418:intron | 20.0% |
! | CAAAAGAAATGCAACTAAAT+AGG | - | chr2.2:41620742-41620761 | None:intergenic | 25.0% |
! | CAATGAAAACAATTCTATTG+TGG | + | chr2.2:41621031-41621050 | MS.gene025418:CDS | 25.0% |
! | CAATGAATATATCTACTGAA+AGG | - | chr2.2:41619199-41619218 | None:intergenic | 25.0% |
! | CCAGTAATTAAACTTAAAAC+AGG | - | chr2.2:41619519-41619538 | None:intergenic | 25.0% |
! | TAAAGAAAACTAGTTAAGAC+AGG | - | chr2.2:41619026-41619045 | None:intergenic | 25.0% |
! | TTCTGCATCAAAACATAATA+GGG | + | chr2.2:41619566-41619585 | MS.gene025418:CDS | 25.0% |
!! | CACAATAGAATTGTTTTCAT+TGG | - | chr2.2:41621033-41621052 | None:intergenic | 25.0% |
!!! | CCTGTTTTAAGTTTAATTAC+TGG | + | chr2.2:41619516-41619535 | MS.gene025418:CDS | 25.0% |
!!! | GCAAATAATTTGTTGAAATC+TGG | - | chr2.2:41619483-41619502 | None:intergenic | 25.0% |
!!! | TTTCATATTTTTTTAGGGGT+GGG | + | chr2.2:41619286-41619305 | MS.gene025418:intron | 25.0% |
!!! | TTTTCATATTTTTTTAGGGG+TGG | + | chr2.2:41619285-41619304 | MS.gene025418:intron | 25.0% |
AAGAAAGAATCCAATCCATT+TGG | + | chr2.2:41618950-41618969 | MS.gene025418:CDS | 30.0% | |
AAGATCAAAGATAAGGAAAC+AGG | + | chr2.2:41620822-41620841 | MS.gene025418:CDS | 30.0% | |
AGTTTAGCTAATTCACAGAA+AGG | - | chr2.2:41620394-41620413 | None:intergenic | 30.0% | |
ATCTAACAAAGAGAGATCAA+AGG | - | chr2.2:41621229-41621248 | None:intergenic | 30.0% | |
ATTCAACGATGTCTATGAAT+TGG | + | chr2.2:41620870-41620889 | MS.gene025418:intron | 30.0% | |
CAGAGATCTAACATGATTAT+TGG | + | chr2.2:41620127-41620146 | MS.gene025418:CDS | 30.0% | |
CATTGAAGTAGTGCAATATT+TGG | - | chr2.2:41619113-41619132 | None:intergenic | 30.0% | |
CTCTCATACAAACATGTTAT+AGG | + | chr2.2:41620512-41620531 | MS.gene025418:intron | 30.0% | |
CTTCTGCATCAAAACATAAT+AGG | + | chr2.2:41619565-41619584 | MS.gene025418:CDS | 30.0% | |
TCTAACATGATTATTGGTGA+TGG | + | chr2.2:41620133-41620152 | MS.gene025418:CDS | 30.0% | |
TCTTTGTAGAAAATCCATCT+GGG | + | chr2.2:41620249-41620268 | MS.gene025418:intron | 30.0% | |
TTCTTTGTAGAAAATCCATC+TGG | + | chr2.2:41620248-41620267 | MS.gene025418:intron | 30.0% | |
! | ACACATTCAATTAGAAGTGT+CGG | + | chr2.2:41619940-41619959 | MS.gene025418:intron | 30.0% |
! | GGATTTTCTACAAAGAAACA+AGG | - | chr2.2:41620245-41620264 | None:intergenic | 30.0% |
! | TTAGTTGCATTTCTTTTGAC+AGG | + | chr2.2:41620744-41620763 | MS.gene025418:intron | 30.0% |
!! | AATGTTTATGCATTTTGGTC+AGG | + | chr2.2:41619416-41619435 | MS.gene025418:intron | 30.0% |
!! | TATTGGTGATGGTAAGATTA+TGG | + | chr2.2:41620144-41620163 | MS.gene025418:intron | 30.0% |
!!! | TAGGAAGTGTTTTTAAGTAG+TGG | + | chr2.2:41620531-41620550 | MS.gene025418:intron | 30.0% |
!!! | TTCATATTTTTTTAGGGGTG+GGG | + | chr2.2:41619287-41619306 | MS.gene025418:intron | 30.0% |
AAAGAAAAAGGCTGTCAAAC+AGG | + | chr2.2:41620788-41620807 | MS.gene025418:CDS | 35.0% | |
AAATTGTAAGGTCTGCCAAA+TGG | - | chr2.2:41618968-41618987 | None:intergenic | 35.0% | |
AAGCTGAGCAACATTAAGAA+GGG | - | chr2.2:41620688-41620707 | None:intergenic | 35.0% | |
AATAGATCTGCAACCAATTC+TGG | - | chr2.2:41621351-41621370 | None:intergenic | 35.0% | |
ACTCAAATTAGGAGCAATCT+TGG | - | chr2.2:41621284-41621303 | None:intergenic | 35.0% | |
CACCAAATCACACTCAAATT+AGG | - | chr2.2:41621295-41621314 | None:intergenic | 35.0% | |
CATGATTTACTGACATCTAG+CGG | - | chr2.2:41618998-41619017 | None:intergenic | 35.0% | |
CGGCTAAAAGATCAAAGATA+AGG | + | chr2.2:41620815-41620834 | MS.gene025418:CDS | 35.0% | |
CTACAAAGGTTAGAACACTT+AGG | + | chr2.2:41620002-41620021 | MS.gene025418:intron | 35.0% | |
CTCCTAATTTGAGTGTGATT+TGG | + | chr2.2:41621290-41621309 | MS.gene025418:intron | 35.0% | |
GAAGAGCTAGTTAAAGAGTA+TGG | + | chr2.2:41621324-41621343 | MS.gene025418:CDS | 35.0% | |
GCATCAAAACATAATAGGGA+TGG | + | chr2.2:41619570-41619589 | MS.gene025418:CDS | 35.0% | |
TAAGCTGAGCAACATTAAGA+AGG | - | chr2.2:41620689-41620708 | None:intergenic | 35.0% | |
TCTTCACATTCTTTCTGACA+AGG | - | chr2.2:41620921-41620940 | None:intergenic | 35.0% | |
TCTTGATGCTCAACTAAAAC+TGG | + | chr2.2:41620322-41620341 | MS.gene025418:CDS | 35.0% | |
! | AAACGATTTTGTTCACGCTT+TGG | - | chr2.2:41619655-41619674 | None:intergenic | 35.0% |
! | ACAGTTTGTTCTTGTTCTTC+TGG | + | chr2.2:41619607-41619626 | MS.gene025418:intron | 35.0% |
! | CTAATTTGAGTGTGATTTGG+TGG | + | chr2.2:41621293-41621312 | MS.gene025418:intron | 35.0% |
! | TAAAGAGTATGGACCAGAAT+TGG | + | chr2.2:41621335-41621354 | MS.gene025418:CDS | 35.0% |
!! | TCAATTAGAAGTGTCGGTAT+CGG | + | chr2.2:41619946-41619965 | MS.gene025418:intron | 35.0% |
!!! | TATGTTTTGATGCAGAAGAC+TGG | - | chr2.2:41619563-41619582 | None:intergenic | 35.0% |
!!! | TATTGTTTTTGACACGCTAG+CGG | + | chr2.2:41620601-41620620 | MS.gene025418:intron | 35.0% |
AAGGCTGTCAAACAGGAAAT+CGG | + | chr2.2:41620795-41620814 | MS.gene025418:CDS | 40.0% | |
ACAAAATCGTTTATCTGCGC+AGG | + | chr2.2:41619663-41619682 | MS.gene025418:intron | 40.0% | |
AGGATTATAGGAGAGCTCTA+TGG | - | chr2.2:41619153-41619172 | None:intergenic | 40.0% | |
ATAGGGATGGAACTTCAATG+AGG | + | chr2.2:41619583-41619602 | MS.gene025418:CDS | 40.0% | |
CAAAATCGTTTATCTGCGCA+GGG | + | chr2.2:41619664-41619683 | MS.gene025418:intron | 40.0% | |
CTATAATCCTCATGTAGCAG+AGG | + | chr2.2:41619163-41619182 | MS.gene025418:CDS | 40.0% | |
CTCTGCTACATGAGGATTAT+AGG | - | chr2.2:41619165-41619184 | None:intergenic | 40.0% | |
GAAAATCTGCTCACAACAAC+AGG | + | chr2.2:41620487-41620506 | MS.gene025418:intron | 40.0% | |
GAATTTGGGGACAGTTGTTA+AGG | + | chr2.2:41620280-41620299 | MS.gene025418:CDS | 40.0% | |
GATCTCTGCTTCATACTTGA+AGG | - | chr2.2:41620115-41620134 | None:intergenic | 40.0% | |
GGAAGTAAGAGATCAACAGA+TGG | + | chr2.2:41619695-41619714 | MS.gene025418:CDS | 40.0% | |
GGATTATAGGAGAGCTCTAT+GGG | - | chr2.2:41619152-41619171 | None:intergenic | 40.0% | |
GTCTAATCACATCCTTTCCT+TGG | + | chr2.2:41620080-41620099 | MS.gene025418:intron | 40.0% | |
TACAGTAGCAATGATGCCTA+CGG | + | chr2.2:41620633-41620652 | MS.gene025418:intron | 40.0% | |
TACTACAGATGTTGACGTGT+CGG | - | chr2.2:41619841-41619860 | None:intergenic | 40.0% | |
TCGTTGAATTGCACCAATCA+TGG | - | chr2.2:41620859-41620878 | None:intergenic | 40.0% | |
TGGCAGACCTTACAATTTCT+CGG | + | chr2.2:41618970-41618989 | MS.gene025418:CDS | 40.0% | |
! | ACACCTTCGTTTAGAAGTGT+CGG | + | chr2.2:41619977-41619996 | MS.gene025418:intron | 40.0% |
! | TCTGCGTACCATTTCTGAAA+AGG | - | chr2.2:41619454-41619473 | None:intergenic | 40.0% |
! | TGAGCTTTCTAGGAAATGTC+TGG | + | chr2.2:41621001-41621020 | MS.gene025418:CDS | 40.0% |
! | TTTTGATGCAGAAGACTGGT+TGG | - | chr2.2:41619559-41619578 | None:intergenic | 40.0% |
!! | ATTTGAGTGTGATTTGGTGG+TGG | + | chr2.2:41621296-41621315 | MS.gene025418:intron | 40.0% |
!!! | ATTTTTTTAGGGGTGGGGTT+GGG | + | chr2.2:41619292-41619311 | MS.gene025418:intron | 40.0% |
!!! | TATTTTTTTAGGGGTGGGGT+TGG | + | chr2.2:41619291-41619310 | MS.gene025418:intron | 40.0% |
AAACACTCGCTGAGCTTTCT+AGG | + | chr2.2:41620991-41621010 | MS.gene025418:CDS | 45.0% | |
AATCACATCCTTTCCTTGGC+AGG | + | chr2.2:41620084-41620103 | MS.gene025418:intron | 45.0% | |
AATCCTCATGTAGCAGAGGT+GGG | + | chr2.2:41619167-41619186 | MS.gene025418:intron | 45.0% | |
AATGATGCCTACGGGAAGAT+TGG | + | chr2.2:41620642-41620661 | MS.gene025418:intron | 45.0% | |
ACAGTAGCAATGATGCCTAC+GGG | + | chr2.2:41620634-41620653 | MS.gene025418:intron | 45.0% | |
AGCGAGTGTTTGTGTTAGGA+CGG | - | chr2.2:41620982-41621001 | None:intergenic | 45.0% | |
CACAAGAACTGCAGTTCATG+TGG | + | chr2.2:41620205-41620224 | MS.gene025418:intron | 45.0% | |
GGTACGTACTAGACCATGAT+TGG | + | chr2.2:41620843-41620862 | MS.gene025418:intron | 45.0% | |
GTAAGGTCTGCCAAATGGAT+TGG | - | chr2.2:41618963-41618982 | None:intergenic | 45.0% | |
GTAGAAAATCCATCTGGGCT+GGG | + | chr2.2:41620254-41620273 | MS.gene025418:intron | 45.0% | |
TAATCCTCATGTAGCAGAGG+TGG | + | chr2.2:41619166-41619185 | MS.gene025418:intron | 45.0% | |
TCATGTGTTGCGTCAGTATC+AGG | + | chr2.2:41619884-41619903 | MS.gene025418:intron | 45.0% | |
TGTAGAAAATCCATCTGGGC+TGG | + | chr2.2:41620253-41620272 | MS.gene025418:intron | 45.0% | |
!! | AACCTATGAAGCATCGACAC+TGG | + | chr2.2:41619806-41619825 | MS.gene025418:intron | 45.0% |
!! | TAGAAGTGTCGGTGCTACAA+AGG | + | chr2.2:41619988-41620007 | MS.gene025418:intron | 45.0% |
!!! | TGCACTGGCCTTTTCAGAAA+TGG | + | chr2.2:41619443-41619462 | MS.gene025418:CDS | 45.0% |
!!! | TTTTTTTAGGGGTGGGGTTG+GGG | + | chr2.2:41619293-41619312 | MS.gene025418:intron | 45.0% |
AAATTCTGACCCAGCCCAGA+TGG | - | chr2.2:41620266-41620285 | None:intergenic | 50.0% | |
AATCGTTTATCTGCGCAGGG+CGG | + | chr2.2:41619667-41619686 | MS.gene025418:intron | 50.0% | |
AGGATAGTCCTGCCAAGGAA+AGG | - | chr2.2:41620095-41620114 | None:intergenic | 50.0% | |
CTTGAAGGATAGTCCTGCCA+AGG | - | chr2.2:41620100-41620119 | None:intergenic | 50.0% | |
GCTCAGCGAGTGTTTGTGTT+AGG | - | chr2.2:41620986-41621005 | None:intergenic | 50.0% | |
TCCATCTCCAATCTTCCCGT+AGG | - | chr2.2:41620652-41620671 | None:intergenic | 50.0% | |
TGACACGCTAGCGGTTATAG+CGG | + | chr2.2:41620610-41620629 | MS.gene025418:intron | 50.0% | |
! | AGATGTTGACGTGTCGGTGT+CGG | - | chr2.2:41619835-41619854 | None:intergenic | 50.0% |
! | AGTGACACACGTGTTGGTGT+TGG | + | chr2.2:41619908-41619927 | MS.gene025418:intron | 50.0% |
! | ATCTGGGCTGGGTCAGAATT+TGG | + | chr2.2:41620265-41620284 | MS.gene025418:CDS | 50.0% |
! | GCACCGACACTTCTAAACGA+AGG | - | chr2.2:41619983-41620002 | None:intergenic | 50.0% |
! | TCTGGGCTGGGTCAGAATTT+GGG | + | chr2.2:41620266-41620285 | MS.gene025418:CDS | 50.0% |
! | TTTTGGTCAGGATGCTGCAC+TGG | + | chr2.2:41619428-41619447 | MS.gene025418:intron | 50.0% |
!! | GTCCAGTGTCGATGCTTCAT+AGG | - | chr2.2:41619811-41619830 | None:intergenic | 50.0% |
!! | GTGTGATTTGGTGGTGGAAC+AGG | + | chr2.2:41621302-41621321 | MS.gene025418:intron | 50.0% |
!!! | TTTTTTAGGGGTGGGGTTGG+GGG | + | chr2.2:41619294-41619313 | MS.gene025418:intron | 50.0% |
GCCTACGGGAAGATTGGAGA+TGG | + | chr2.2:41620648-41620667 | MS.gene025418:intron | 55.0% | |
TCAGGCAGTGACACACGTGT+TGG | + | chr2.2:41619902-41619921 | MS.gene025418:intron | 55.0% | |
! | AGCGGCGCCGAGAAATTGTA+AGG | - | chr2.2:41618980-41618999 | None:intergenic | 55.0% |
! | CTGGGCTGGGTCAGAATTTG+GGG | + | chr2.2:41620267-41620286 | MS.gene025418:CDS | 55.0% |
CGACCCACCTCTGCTACATG+AGG | - | chr2.2:41619173-41619192 | None:intergenic | 60.0% | |
GTTTATCTGCGCAGGGCGGC+TGG | + | chr2.2:41619671-41619690 | MS.gene025418:intron | 65.0% | |
TATCTGCGCAGGGCGGCTGG+TGG | + | chr2.2:41619674-41619693 | MS.gene025418:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 41618944 | 41621389 | 41618944 | ID=MS.gene025418 |
chr2.2 | mRNA | 41618944 | 41621389 | 41618944 | ID=MS.gene025418.t1;Parent=MS.gene025418 |
chr2.2 | exon | 41618944 | 41619003 | 41618944 | ID=MS.gene025418.t1.exon1;Parent=MS.gene025418.t1 |
chr2.2 | CDS | 41618944 | 41619003 | 41618944 | ID=cds.MS.gene025418.t1;Parent=MS.gene025418.t1 |
chr2.2 | exon | 41619104 | 41619184 | 41619104 | ID=MS.gene025418.t1.exon2;Parent=MS.gene025418.t1 |
chr2.2 | CDS | 41619104 | 41619184 | 41619104 | ID=cds.MS.gene025418.t1;Parent=MS.gene025418.t1 |
chr2.2 | exon | 41619438 | 41619604 | 41619438 | ID=MS.gene025418.t1.exon3;Parent=MS.gene025418.t1 |
chr2.2 | CDS | 41619438 | 41619604 | 41619438 | ID=cds.MS.gene025418.t1;Parent=MS.gene025418.t1 |
chr2.2 | exon | 41619685 | 41619739 | 41619685 | ID=MS.gene025418.t1.exon4;Parent=MS.gene025418.t1 |
chr2.2 | CDS | 41619685 | 41619739 | 41619685 | ID=cds.MS.gene025418.t1;Parent=MS.gene025418.t1 |
chr2.2 | exon | 41620106 | 41620154 | 41620106 | ID=MS.gene025418.t1.exon5;Parent=MS.gene025418.t1 |
chr2.2 | CDS | 41620106 | 41620154 | 41620106 | ID=cds.MS.gene025418.t1;Parent=MS.gene025418.t1 |
chr2.2 | exon | 41620258 | 41620343 | 41620258 | ID=MS.gene025418.t1.exon6;Parent=MS.gene025418.t1 |
chr2.2 | CDS | 41620258 | 41620343 | 41620258 | ID=cds.MS.gene025418.t1;Parent=MS.gene025418.t1 |
chr2.2 | exon | 41620766 | 41620843 | 41620766 | ID=MS.gene025418.t1.exon7;Parent=MS.gene025418.t1 |
chr2.2 | CDS | 41620766 | 41620843 | 41620766 | ID=cds.MS.gene025418.t1;Parent=MS.gene025418.t1 |
chr2.2 | exon | 41620927 | 41621052 | 41620927 | ID=MS.gene025418.t1.exon8;Parent=MS.gene025418.t1 |
chr2.2 | CDS | 41620927 | 41621052 | 41620927 | ID=cds.MS.gene025418.t1;Parent=MS.gene025418.t1 |
chr2.2 | exon | 41621324 | 41621389 | 41621324 | ID=MS.gene025418.t1.exon9;Parent=MS.gene025418.t1 |
chr2.2 | CDS | 41621324 | 41621389 | 41621324 | ID=cds.MS.gene025418.t1;Parent=MS.gene025418.t1 |
Gene Sequence |
Protein sequence |