Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025566.t1 | KEH17186.1 | 77.3 | 75 | 16 | 1 | 11 | 85 | 17 | 90 | 6.00E-23 | 117.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025566.t1 | A0A072TIY9 | 77.3 | 75 | 16 | 1 | 11 | 85 | 17 | 90 | 4.3e-23 | 117.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene025566.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025566.t1 | MTR_4g039380 | 72.650 | 117 | 18 | 2 | 112 | 214 | 1 | 117 | 1.72e-47 | 152 |
| MS.gene025566.t1 | MTR_4g039640 | 76.068 | 117 | 14 | 2 | 112 | 214 | 1 | 117 | 1.28e-46 | 150 |
| MS.gene025566.t1 | MTR_4g039340 | 64.885 | 131 | 18 | 2 | 112 | 214 | 1 | 131 | 1.08e-44 | 145 |
| MS.gene025566.t1 | MTR_0035s0070 | 73.196 | 97 | 25 | 1 | 11 | 107 | 17 | 112 | 2.43e-41 | 137 |
| MS.gene025566.t1 | MTR_4g039400 | 46.602 | 103 | 34 | 1 | 112 | 214 | 1 | 82 | 2.73e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTAATTATTGAGGATTT+TGG | 0.148562 | 4.3:-60776702 | MS.gene025566:CDS |
| TCTCATTCATCTGGTGTATA+AGG | 0.184471 | 4.3:+60773063 | None:intergenic |
| TGTGGTTGAGGCTGATTATT+TGG | 0.247122 | 4.3:+60773225 | None:intergenic |
| GCTGAATAAGATTCCTCTAT+TGG | 0.255868 | 4.3:-60776556 | MS.gene025566:intron |
| CTCGATTCTAATATTAAATC+TGG | 0.264896 | 4.3:+60773264 | None:intergenic |
| GCTTCAAATATATTAAGTTT+TGG | 0.295681 | 4.3:+60776645 | None:intergenic |
| AGTTCGAAAGCGCGAACATT+AGG | 0.339523 | 4.3:+60773093 | None:intergenic |
| ACTTAGATTCAGAACATATC+AGG | 0.355882 | 4.3:-60776850 | MS.gene025566:CDS |
| CTCATTCATCTGGTGTATAA+GGG | 0.356164 | 4.3:+60773064 | None:intergenic |
| CAAAGTCGTTTCTTCATTGT+CGG | 0.369479 | 4.3:+60776578 | None:intergenic |
| GCCTGGTCTGTTAATTATTG+AGG | 0.400311 | 4.3:-60776709 | MS.gene025566:CDS |
| TTCTAGCTTTGACATGTTAG+TGG | 0.414230 | 4.3:+60773362 | None:intergenic |
| GGATCAATCAACGGGACATA+AGG | 0.431213 | 4.3:+60776666 | None:intergenic |
| GGAGGTTGGTTCAAATCAAA+TGG | 0.432622 | 4.3:+60773114 | None:intergenic |
| TAGGGAAATGCCCGCCTGCC+TGG | 0.440332 | 4.3:-60776726 | MS.gene025566:CDS |
| GTCTCTATCGGAAGTGGCAT+TGG | 0.440777 | 4.3:+60776893 | None:intergenic |
| TCTGTTAAACTTACCAATAG+AGG | 0.441196 | 4.3:+60776543 | None:intergenic |
| GGAAGTGGCATTGGCTTGAA+TGG | 0.458677 | 4.3:+60776902 | None:intergenic |
| TGAGGCTGATTATTTGGTGG+TGG | 0.505165 | 4.3:+60773231 | None:intergenic |
| TCGAAAGCGCGAACATTAGG+AGG | 0.511991 | 4.3:+60773096 | None:intergenic |
| AAATCAAATGGTTGCACGCG+TGG | 0.532950 | 4.3:+60773126 | None:intergenic |
| AAGCGCGAACATTAGGAGGT+TGG | 0.540533 | 4.3:+60773100 | None:intergenic |
| AAAGATGTCTCTATCGGAAG+TGG | 0.544294 | 4.3:+60776887 | None:intergenic |
| CAATCAACGGGACATAAGGT+TGG | 0.544757 | 4.3:+60776670 | None:intergenic |
| ACTGCTAAAGCTTGTGGAGA+TGG | 0.545041 | 4.3:+60773309 | None:intergenic |
| AATGGTTGCACGCGTGGAGG+TGG | 0.556418 | 4.3:+60773132 | None:intergenic |
| GTTGATAAAGATGTCTCTAT+CGG | 0.564645 | 4.3:+60776881 | None:intergenic |
| ACATGCACTGCTAAAGCTTG+TGG | 0.565788 | 4.3:+60773303 | None:intergenic |
| GGTTGAGGCTGATTATTTGG+TGG | 0.570406 | 4.3:+60773228 | None:intergenic |
| AATTAACAGACCAGGCAGGC+GGG | 0.580326 | 4.3:+60776716 | None:intergenic |
| CAATAATTAACAGACCAGGC+AGG | 0.599473 | 4.3:+60776712 | None:intergenic |
| GGTGATAATCGCAATTTACA+CGG | 0.601171 | 4.3:+60776924 | None:intergenic |
| GAAGTGGCATTGGCTTGAAT+GGG | 0.601775 | 4.3:+60776903 | None:intergenic |
| ACTTGCAATGAAGAAGATGA+TGG | 0.602752 | 4.3:-60776606 | MS.gene025566:CDS |
| TCCTCAATAATTAACAGACC+AGG | 0.611424 | 4.3:+60776708 | None:intergenic |
| TCAAATGGTTGCACGCGTGG+AGG | 0.626989 | 4.3:+60773129 | None:intergenic |
| TAATTAACAGACCAGGCAGG+CGG | 0.628066 | 4.3:+60776715 | None:intergenic |
| GCATCAACCACAAAATGCAC+CGG | 0.637007 | 4.3:-60773193 | MS.gene025566:CDS |
| ATATTAGAATCGAGTAAACA+AGG | 0.646902 | 4.3:-60773255 | MS.gene025566:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTAAAATTTTTAAAA+TGG | + | chr4.3:60776104-60776123 | None:intergenic | 0.0% |
| !!! | TATTTTAAAATTTTTAAAAT+GGG | + | chr4.3:60776103-60776122 | None:intergenic | 0.0% |
| !! | TAATTAAAAAAGTTATTCAA+TGG | + | chr4.3:60775853-60775872 | None:intergenic | 10.0% |
| !!! | AATTATAAAAGGATATTTTT+AGG | + | chr4.3:60775337-60775356 | None:intergenic | 10.0% |
| !!! | TTATTTTTCTTATAAAGTAA+GGG | - | chr4.3:60776311-60776330 | MS.gene025566:intron | 10.0% |
| !!! | TTTATTTTTCTTATAAAGTA+AGG | - | chr4.3:60776310-60776329 | MS.gene025566:intron | 10.0% |
| !! | AAAATGAAAAAGATTTAGTT+AGG | + | chr4.3:60774030-60774049 | None:intergenic | 15.0% |
| !! | AAACAATTATAATGTTAAGA+TGG | - | chr4.3:60774685-60774704 | MS.gene025566:intron | 15.0% |
| !! | AAAGATCTTATATTTATGTA+TGG | + | chr4.3:60776049-60776068 | None:intergenic | 15.0% |
| !! | AAATCATAATATTTAGATCA+AGG | + | chr4.3:60773235-60773254 | None:intergenic | 15.0% |
| !! | AGAAAAAATTAAAGTTGTAT+TGG | + | chr4.3:60776233-60776252 | None:intergenic | 15.0% |
| !! | ATGTGAAAGATAATTATAAA+AGG | + | chr4.3:60775348-60775367 | None:intergenic | 15.0% |
| !! | ATTAATTAGTAAATAACTGT+TGG | + | chr4.3:60775407-60775426 | None:intergenic | 15.0% |
| !! | TTAATTAGTAAATAACTGTT+GGG | + | chr4.3:60775406-60775425 | None:intergenic | 15.0% |
| !!! | CAGAAGAAATTATTTTTTTA+TGG | - | chr4.3:60775806-60775825 | MS.gene025566:intron | 15.0% |
| !!! | TTTCATGCTTTTTTTTTTTT+TGG | + | chr4.3:60775499-60775518 | None:intergenic | 15.0% |
| !! | ATCTTTCACATTATTGAATT+TGG | - | chr4.3:60775357-60775376 | MS.gene025566:intron | 20.0% |
| !! | GTCATGAAAATTGTTTAATA+TGG | - | chr4.3:60775112-60775131 | MS.gene025566:intron | 20.0% |
| !! | TATAATAGTAAATTAGACGT+AGG | + | chr4.3:60775991-60776010 | None:intergenic | 20.0% |
| !! | TTAGATATATGATGAATGAA+AGG | + | chr4.3:60774127-60774146 | None:intergenic | 20.0% |
| !!! | AAAATGTGTATTTTTGTCAT+AGG | - | chr4.3:60773256-60773275 | MS.gene025566:CDS | 20.0% |
| !!! | AAATGTGTATTTTTGTCATA+GGG | - | chr4.3:60773257-60773276 | MS.gene025566:CDS | 20.0% |
| !!! | AAGGATATTTTTAGGTTAAT+TGG | + | chr4.3:60775329-60775348 | None:intergenic | 20.0% |
| !!! | AATGTTAATTTTTGTGTGTT+TGG | + | chr4.3:60775560-60775579 | None:intergenic | 20.0% |
| !!! | ACATTCATTTTTTTAGACAT+TGG | + | chr4.3:60774591-60774610 | None:intergenic | 20.0% |
| !!! | CATTCATTTTTTTAGACATT+GGG | + | chr4.3:60774590-60774609 | None:intergenic | 20.0% |
| !!! | CATTTTAATCAAATAAGATC+GGG | + | chr4.3:60774499-60774518 | None:intergenic | 20.0% |
| !!! | CCATTTTAATCAAATAAGAT+CGG | + | chr4.3:60774500-60774519 | None:intergenic | 20.0% |
| !!! | CTTCTTTTCTTTTTCTTTTT+TGG | + | chr4.3:60775432-60775451 | None:intergenic | 20.0% |
| !!! | GCTTCAAATATATTAAGTTT+TGG | + | chr4.3:60773359-60773378 | None:intergenic | 20.0% |
| !!! | GTGAAACATTCTTAATTTTA+GGG | + | chr4.3:60776587-60776606 | None:intergenic | 20.0% |
| !!! | TACTATTTTTTTTCGATTCA+AGG | - | chr4.3:60775179-60775198 | MS.gene025566:intron | 20.0% |
| !!! | TCTTTTATTTTCTGTGATTT+AGG | - | chr4.3:60774533-60774552 | MS.gene025566:intron | 20.0% |
| !!! | TTGTTTGTGTTTTTTTTTGA+AGG | + | chr4.3:60774245-60774264 | None:intergenic | 20.0% |
| ! | AAAAAGAATTCAACTGAATG+AGG | - | chr4.3:60773744-60773763 | MS.gene025566:intron | 25.0% |
| ! | AAGTTAAACAACTTTAGTGT+CGG | + | chr4.3:60774991-60775010 | None:intergenic | 25.0% |
| ! | ACTAAAAAGGGGAAATATTT+GGG | + | chr4.3:60774162-60774181 | None:intergenic | 25.0% |
| ! | ATATTAGAATCGAGTAAACA+AGG | - | chr4.3:60776746-60776765 | MS.gene025566:intron | 25.0% |
| ! | ATCTCACAAAAAAAAAGTTG+AGG | + | chr4.3:60773981-60774000 | None:intergenic | 25.0% |
| ! | ATGCAATACACTAAACAATT+AGG | + | chr4.3:60773772-60773791 | None:intergenic | 25.0% |
| ! | ATGTTTGACTCTCAATAATT+TGG | + | chr4.3:60773908-60773927 | None:intergenic | 25.0% |
| ! | ATGTTTGCACTAAAAAATGA+TGG | - | chr4.3:60774640-60774659 | MS.gene025566:intron | 25.0% |
| ! | CTCGATTCTAATATTAAATC+TGG | + | chr4.3:60776740-60776759 | None:intergenic | 25.0% |
| ! | GACATCTACTATAATTCTAA+GGG | + | chr4.3:60775766-60775785 | None:intergenic | 25.0% |
| ! | TGACATCTACTATAATTCTA+AGG | + | chr4.3:60775767-60775786 | None:intergenic | 25.0% |
| ! | TTCAGTTCAAATTCAAACTA+AGG | + | chr4.3:60775910-60775929 | None:intergenic | 25.0% |
| !! | CCGATCTTATTTGATTAAAA+TGG | - | chr4.3:60774497-60774516 | MS.gene025566:intron | 25.0% |
| !! | CTGTTAATTATTGAGGATTT+TGG | - | chr4.3:60773299-60773318 | MS.gene025566:CDS | 25.0% |
| !! | GGTGAAACATTCTTAATTTT+AGG | + | chr4.3:60776588-60776607 | None:intergenic | 25.0% |
| !!! | AATCGACACTTATTTTGAAA+CGG | - | chr4.3:60776402-60776421 | MS.gene025566:intron | 25.0% |
| !!! | GATTTTCCTTTAAAGTTGAT+TGG | - | chr4.3:60774443-60774462 | MS.gene025566:intron | 25.0% |
| !!! | TAATTTTTGGCAAGACTATT+GGG | + | chr4.3:60776610-60776629 | None:intergenic | 25.0% |
| !!! | TTAAGTTTTGGATCAATCAA+CGG | + | chr4.3:60773347-60773366 | None:intergenic | 25.0% |
| !!! | TTAATTTTTGGCAAGACTAT+TGG | + | chr4.3:60776611-60776630 | None:intergenic | 25.0% |
| !!! | TTCCTTAATTTGTGTGTAAT+TGG | - | chr4.3:60776376-60776395 | MS.gene025566:intron | 25.0% |
| !!! | TTGGTTGATAGAAAATTCAA+GGG | + | chr4.3:60775731-60775750 | None:intergenic | 25.0% |
| !!! | TTTGGTTGATAGAAAATTCA+AGG | + | chr4.3:60775732-60775751 | None:intergenic | 25.0% |
| AATCCTAAATGTCTGATTCA+TGG | + | chr4.3:60775061-60775080 | None:intergenic | 30.0% | |
| ACTTAGATTCAGAACATATC+AGG | - | chr4.3:60773151-60773170 | MS.gene025566:CDS | 30.0% | |
| AGCCAATTACACACAAATTA+AGG | + | chr4.3:60776381-60776400 | None:intergenic | 30.0% | |
| AGTAGTAGCATGACTAAAAA+GGG | + | chr4.3:60774174-60774193 | None:intergenic | 30.0% | |
| ATCTGATAGCATTAACTTTG+TGG | - | chr4.3:60774890-60774909 | MS.gene025566:intron | 30.0% | |
| CTAAGGGCAAATTAGTAATT+TGG | + | chr4.3:60775750-60775769 | None:intergenic | 30.0% | |
| GACTAAAAAGGGGAAATATT+TGG | + | chr4.3:60774163-60774182 | None:intergenic | 30.0% | |
| GAGAATTAGAAGATAGAAGA+TGG | + | chr4.3:60774357-60774376 | None:intergenic | 30.0% | |
| GCTGATAAAGAATAGACAAA+TGG | + | chr4.3:60774091-60774110 | None:intergenic | 30.0% | |
| GTTTAGAAAAACACTTACGT+TGG | + | chr4.3:60773192-60773211 | None:intergenic | 30.0% | |
| TAAAATCAACTAAAATGCGC+CGG | - | chr4.3:60775688-60775707 | MS.gene025566:intron | 30.0% | |
| TAGTAGTAGCATGACTAAAA+AGG | + | chr4.3:60774175-60774194 | None:intergenic | 30.0% | |
| TCTGTTAAACTTACCAATAG+AGG | + | chr4.3:60773461-60773480 | None:intergenic | 30.0% | |
| TGAAAGCCAATCAACTTTAA+AGG | + | chr4.3:60774452-60774471 | None:intergenic | 30.0% | |
| TGGTACATTAAAAACGTTTG+TGG | - | chr4.3:60775132-60775151 | MS.gene025566:intron | 30.0% | |
| ! | ATTTCGTTGAACAACTTTTG+AGG | - | chr4.3:60775942-60775961 | MS.gene025566:intron | 30.0% |
| ! | GTGGTTGTTGTCTTAATTTT+TGG | + | chr4.3:60776623-60776642 | None:intergenic | 30.0% |
| ! | GTTGATAAAGATGTCTCTAT+CGG | + | chr4.3:60773123-60773142 | None:intergenic | 30.0% |
| ! | TGTTTTTCCTTTCTGTAACA+GGG | - | chr4.3:60775084-60775103 | MS.gene025566:intron | 30.0% |
| !! | AAGTGACACTCATTTTGAAA+CGG | + | chr4.3:60776168-60776187 | None:intergenic | 30.0% |
| !! | TGGTTGATAGAAAATTCAAG+GGG | + | chr4.3:60775730-60775749 | None:intergenic | 30.0% |
| !! | TTCAAAATGAGTGTCACTTT+AGG | - | chr4.3:60776169-60776188 | MS.gene025566:intron | 30.0% |
| !! | TTTGATCCAGATTTGTTACT+TGG | + | chr4.3:60773634-60773653 | None:intergenic | 30.0% |
| !!! | AATTTTTGGCAAGACTATTG+GGG | + | chr4.3:60776609-60776628 | None:intergenic | 30.0% |
| !!! | GATGCAATGGTGTATTTTTT+AGG | - | chr4.3:60773840-60773859 | MS.gene025566:intron | 30.0% |
| !!! | TAAGTTTTGGATCAATCAAC+GGG | + | chr4.3:60773346-60773365 | None:intergenic | 30.0% |
| AACACTCCAAGTAACAAATC+TGG | - | chr4.3:60773625-60773644 | MS.gene025566:intron | 35.0% | |
| AATAACTGTTGGGATGAACA+AGG | + | chr4.3:60775396-60775415 | None:intergenic | 35.0% | |
| ACTTGCAATGAAGAAGATGA+TGG | - | chr4.3:60773395-60773414 | MS.gene025566:intron | 35.0% | |
| AGAAAAACACTTACGTTGGT+AGG | + | chr4.3:60773188-60773207 | None:intergenic | 35.0% | |
| AGCATGCTCAAGATTGAAAA+TGG | - | chr4.3:60773682-60773701 | MS.gene025566:intron | 35.0% | |
| ATATAGCTTCCTGAACATAG+TGG | + | chr4.3:60773555-60773574 | None:intergenic | 35.0% | |
| ATCGGTTACAAAACCTAACA+GGG | - | chr4.3:60774941-60774960 | MS.gene025566:intron | 35.0% | |
| ATGTAGTGATTCCAATGACA+AGG | - | chr4.3:60773576-60773595 | MS.gene025566:intron | 35.0% | |
| CAAAGTCGTTTCTTCATTGT+CGG | + | chr4.3:60773426-60773445 | None:intergenic | 35.0% | |
| CAACCAAACATCACAAAAGT+AGG | + | chr4.3:60773870-60773889 | None:intergenic | 35.0% | |
| CATGCTCAAGATTGAAAATG+GGG | - | chr4.3:60773684-60773703 | MS.gene025566:intron | 35.0% | |
| CATTGGGTCAAACATACAAT+TGG | + | chr4.3:60774574-60774593 | None:intergenic | 35.0% | |
| CTTAATACACCACTATGTTC+AGG | - | chr4.3:60773543-60773562 | MS.gene025566:intron | 35.0% | |
| GAAGTGATTTGAATTACGTG+TGG | + | chr4.3:60775587-60775606 | None:intergenic | 35.0% | |
| GCATGCTCAAGATTGAAAAT+GGG | - | chr4.3:60773683-60773702 | MS.gene025566:intron | 35.0% | |
| GCTGAATAAGATTCCTCTAT+TGG | - | chr4.3:60773445-60773464 | MS.gene025566:intron | 35.0% | |
| GGTGATAATCGCAATTTACA+CGG | + | chr4.3:60773080-60773099 | None:intergenic | 35.0% | |
| GTAGTAGCATGACTAAAAAG+GGG | + | chr4.3:60774173-60774192 | None:intergenic | 35.0% | |
| TCCTCAATAATTAACAGACC+AGG | + | chr4.3:60773296-60773315 | None:intergenic | 35.0% | |
| TCTCCATGAATCAGACATTT+AGG | - | chr4.3:60775055-60775074 | MS.gene025566:intron | 35.0% | |
| TGTGAGAGAAAAGTTGAAGA+GGG | + | chr4.3:60776266-60776285 | None:intergenic | 35.0% | |
| TGTTCAACGAAATGAGTTAG+AGG | + | chr4.3:60775935-60775954 | None:intergenic | 35.0% | |
| TTAGTCATGCTACTACTACA+TGG | - | chr4.3:60774177-60774196 | MS.gene025566:intron | 35.0% | |
| ! | GTGTTTTTCCTTTCTGTAAC+AGG | - | chr4.3:60775083-60775102 | MS.gene025566:intron | 35.0% |
| !! | ACTTGGAGTGTTTTCAATAC+TGG | + | chr4.3:60773617-60773636 | None:intergenic | 35.0% |
| !! | CTACTTTTGTGATGTTTGGT+TGG | - | chr4.3:60773868-60773887 | MS.gene025566:intron | 35.0% |
| !! | CTTCCTACTTTTGTGATGTT+TGG | - | chr4.3:60773864-60773883 | MS.gene025566:intron | 35.0% |
| !! | TAAACAACTTTAGTGTCGGT+AGG | + | chr4.3:60774987-60775006 | None:intergenic | 35.0% |
| !! | TTCTAGCTTTGACATGTTAG+TGG | + | chr4.3:60776642-60776661 | None:intergenic | 35.0% |
| !!! | GACACTTATTTTGAAACGGA+GGG | - | chr4.3:60776406-60776425 | MS.gene025566:intron | 35.0% |
| !!! | TTTTTTACGCAAATGTCTGC+AGG | - | chr4.3:60774788-60774807 | MS.gene025566:intron | 35.0% |
| AAAACGTGTCAGCTTCTAAG+TGG | - | chr4.3:60775530-60775549 | MS.gene025566:intron | 40.0% | |
| AAAGATGTCTCTATCGGAAG+TGG | + | chr4.3:60773117-60773136 | None:intergenic | 40.0% | |
| AACTTTGTGGCTGTTGAACA+TGG | - | chr4.3:60774903-60774922 | MS.gene025566:intron | 40.0% | |
| ACACACTATCTTCGCATGTT+TGG | + | chr4.3:60773721-60773740 | None:intergenic | 40.0% | |
| ACACACTTGACTTATGTGTG+TGG | + | chr4.3:60775658-60775677 | None:intergenic | 40.0% | |
| CAATAATTAACAGACCAGGC+AGG | + | chr4.3:60773292-60773311 | None:intergenic | 40.0% | |
| GCCTGGTCTGTTAATTATTG+AGG | - | chr4.3:60773292-60773311 | MS.gene025566:CDS | 40.0% | |
| GTGATTTGAATTACGTGTGG+TGG | + | chr4.3:60775584-60775603 | None:intergenic | 40.0% | |
| GTGTGAGAGAAAAGTTGAAG+AGG | + | chr4.3:60776267-60776286 | None:intergenic | 40.0% | |
| TCAACTGTCATGTGATGCAA+TGG | - | chr4.3:60773827-60773846 | MS.gene025566:intron | 40.0% | |
| TGTGGTTGAGGCTGATTATT+TGG | + | chr4.3:60776779-60776798 | None:intergenic | 40.0% | |
| TTAAGACTTGTCTTGCTGGT+TGG | + | chr4.3:60774864-60774883 | None:intergenic | 40.0% | |
| ! | CATCGGTTACAAAACCTAAC+AGG | - | chr4.3:60774940-60774959 | MS.gene025566:intron | 40.0% |
| ! | GGAGGTTGGTTCAAATCAAA+TGG | + | chr4.3:60776890-60776909 | None:intergenic | 40.0% |
| ! | TGCTCATCATTTTGTGGTTG+AGG | + | chr4.3:60776791-60776810 | None:intergenic | 40.0% |
| !! | GGTTGATGCTCATCATTTTG+TGG | + | chr4.3:60776797-60776816 | None:intergenic | 40.0% |
| !! | GGTTGATGTTCAGCATTTTG+TGG | + | chr4.3:60776839-60776858 | None:intergenic | 40.0% |
| !! | TGTTTAACTTGCTCGAATGC+TGG | - | chr4.3:60775001-60775020 | MS.gene025566:intron | 40.0% |
| !!! | CGACACTTATTTTGAAACGG+AGG | - | chr4.3:60776405-60776424 | MS.gene025566:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+TGG | + | chr4.3:60776164-60776183 | None:intergenic | 40.0% |
| AAATCAAATGGTTGCACGCG+TGG | + | chr4.3:60776878-60776897 | None:intergenic | 45.0% | |
| AACTGTTGGGATGAACAAGG+TGG | + | chr4.3:60775393-60775412 | None:intergenic | 45.0% | |
| ACATCGACCCTGTTACAGAA+AGG | + | chr4.3:60775094-60775113 | None:intergenic | 45.0% | |
| ACATGCACTGCTAAAGCTTG+TGG | + | chr4.3:60776701-60776720 | None:intergenic | 45.0% | |
| ACTGCTAAAGCTTGTGGAGA+TGG | + | chr4.3:60776695-60776714 | None:intergenic | 45.0% | |
| CAAATGTCTGCAGGATGTAC+AGG | - | chr4.3:60774797-60774816 | MS.gene025566:intron | 45.0% | |
| CAATCAACGGGACATAAGGT+TGG | + | chr4.3:60773334-60773353 | None:intergenic | 45.0% | |
| CCAGCAAGACAAGTCTTAAG+AGG | - | chr4.3:60774865-60774884 | MS.gene025566:intron | 45.0% | |
| CCTCTTAAGACTTGTCTTGC+TGG | + | chr4.3:60774868-60774887 | None:intergenic | 45.0% | |
| GCATCAACCACAAAATGCAC+CGG | - | chr4.3:60776808-60776827 | MS.gene025566:intron | 45.0% | |
| GGATCAATCAACGGGACATA+AGG | + | chr4.3:60773338-60773357 | None:intergenic | 45.0% | |
| GGTTGAGGCTGATTATTTGG+TGG | + | chr4.3:60776776-60776795 | None:intergenic | 45.0% | |
| TAATTAACAGACCAGGCAGG+CGG | + | chr4.3:60773289-60773308 | None:intergenic | 45.0% | |
| TGTGCAGTGTGTGTGCAAAT+GGG | + | chr4.3:60775623-60775642 | None:intergenic | 45.0% | |
| TTGATACGAACAGCCCTGTT+AGG | + | chr4.3:60774957-60774976 | None:intergenic | 45.0% | |
| TTGTGCAGTGTGTGTGCAAA+TGG | + | chr4.3:60775624-60775643 | None:intergenic | 45.0% | |
| ! | AGTGTGTGTGCAAATGGGTT+CGG | + | chr4.3:60775618-60775637 | None:intergenic | 45.0% |
| ! | AGTTCGAAAGCGCGAACATT+AGG | + | chr4.3:60776911-60776930 | None:intergenic | 45.0% |
| ! | TCAGCATTTTGTGGTAGAGC+CGG | + | chr4.3:60776830-60776849 | None:intergenic | 45.0% |
| ! | TGAGGCTGATTATTTGGTGG+TGG | + | chr4.3:60776773-60776792 | None:intergenic | 45.0% |
| !! | GAAGTGGCATTGGCTTGAAT+GGG | + | chr4.3:60773101-60773120 | None:intergenic | 45.0% |
| !!! | ATTTTAAAATTTTTAAAATG+GGG | + | chr4.3:60776102-60776121 | None:intergenic | 5.0% |
| AAGCGCGAACATTAGGAGGT+TGG | + | chr4.3:60776904-60776923 | None:intergenic | 50.0% | |
| AATTAACAGACCAGGCAGGC+GGG | + | chr4.3:60773288-60773307 | None:intergenic | 50.0% | |
| ATGTCTGCAGGATGTACAGG+AGG | - | chr4.3:60774800-60774819 | MS.gene025566:intron | 50.0% | |
| GCTGTTGAACATGGTGAAGC+TGG | - | chr4.3:60774912-60774931 | MS.gene025566:intron | 50.0% | |
| GTCTCTATCGGAAGTGGCAT+TGG | + | chr4.3:60773111-60773130 | None:intergenic | 50.0% | |
| TGAACATGGTGAAGCTGGTC+AGG | - | chr4.3:60774917-60774936 | MS.gene025566:intron | 50.0% | |
| ! | GGTTGGTGTGTCAATCACAG+AGG | + | chr4.3:60774847-60774866 | None:intergenic | 50.0% |
| ! | GTGTGCAAATGGGTTCGGTT+GGG | + | chr4.3:60775613-60775632 | None:intergenic | 50.0% |
| ! | TCGAAAGCGCGAACATTAGG+AGG | + | chr4.3:60776908-60776927 | None:intergenic | 50.0% |
| ! | TGTGTGCAAATGGGTTCGGT+TGG | + | chr4.3:60775614-60775633 | None:intergenic | 50.0% |
| !! | GGAAGTGGCATTGGCTTGAA+TGG | + | chr4.3:60773102-60773121 | None:intergenic | 50.0% |
| GTATGACCCGTGCGTTAGCA+CGG | - | chr4.3:60775242-60775261 | MS.gene025566:intron | 55.0% | |
| TATGACCCGTGCGTTAGCAC+GGG | - | chr4.3:60775243-60775262 | MS.gene025566:intron | 55.0% | |
| TCAAATGGTTGCACGCGTGG+AGG | + | chr4.3:60776875-60776894 | None:intergenic | 55.0% | |
| TGGTGAAGCTGGTCAGGCAT+CGG | - | chr4.3:60774923-60774942 | MS.gene025566:intron | 55.0% | |
| ! | AGCGACGTCAGCCTTGTCAT+TGG | + | chr4.3:60773590-60773609 | None:intergenic | 55.0% |
| ! | CGTGGAGGTGGTGCATTTTG+TGG | + | chr4.3:60776860-60776879 | None:intergenic | 55.0% |
| ! | GGTAGAGCCGGTGCATTTTG+TGG | + | chr4.3:60776818-60776837 | None:intergenic | 55.0% |
| AATGGTTGCACGCGTGGAGG+TGG | + | chr4.3:60776872-60776891 | None:intergenic | 60.0% | |
| ATCGACCCGTGCTAACGCAC+GGG | + | chr4.3:60775251-60775270 | None:intergenic | 60.0% | |
| CATCGACCCGTGCTAACGCA+CGG | + | chr4.3:60775252-60775271 | None:intergenic | 60.0% | |
| CGTGCGTTAGCACGGGTCGA+TGG | - | chr4.3:60775250-60775269 | MS.gene025566:intron | 65.0% | |
| GGGTGCGTATTGCGCGTTGC+CGG | + | chr4.3:60775710-60775729 | None:intergenic | 65.0% | |
| TAGGGAAATGCCCGCCTGCC+TGG | - | chr4.3:60773275-60773294 | MS.gene025566:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 60773065 | 60776958 | 60773065 | ID=MS.gene025566 |
| chr4.3 | mRNA | 60773065 | 60776958 | 60773065 | ID=MS.gene025566.t1;Parent=MS.gene025566 |
| chr4.3 | exon | 60776830 | 60776958 | 60776830 | ID=MS.gene025566.t1.exon1;Parent=MS.gene025566.t1 |
| chr4.3 | CDS | 60776830 | 60776958 | 60776830 | ID=cds.MS.gene025566.t1;Parent=MS.gene025566.t1 |
| chr4.3 | exon | 60776557 | 60776745 | 60776557 | ID=MS.gene025566.t1.exon2;Parent=MS.gene025566.t1 |
| chr4.3 | CDS | 60776557 | 60776745 | 60776557 | ID=cds.MS.gene025566.t1;Parent=MS.gene025566.t1 |
| chr4.3 | exon | 60773065 | 60773391 | 60773065 | ID=MS.gene025566.t1.exon3;Parent=MS.gene025566.t1 |
| chr4.3 | CDS | 60773065 | 60773391 | 60773065 | ID=cds.MS.gene025566.t1;Parent=MS.gene025566.t1 |
| Gene Sequence |
| Protein sequence |
