AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025614

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025614.t1 MTR_7g105370 91.698 265 15 4 1 261 41 302 4.64e-158 441
MS.gene025614.t1 MTR_1g058350 62.989 281 63 12 1 256 59 323 5.65e-100 295
MS.gene025614.t1 MTR_8g023990 71.795 117 30 2 10 123 164 280 4.31e-51 174
MS.gene025614.t1 MTR_7g117455 73.585 106 25 2 17 119 117 222 4.22e-48 165
MS.gene025614.t1 MTR_5g053920 60.484 124 40 1 9 123 186 309 5.25e-46 158
MS.gene025614.t1 MTR_1g093600 57.143 126 40 1 8 119 182 307 2.03e-41 146
MS.gene025614.t1 MTR_1g116920 45.802 131 53 4 15 141 159 275 4.59e-29 112
MS.gene025614.t1 MTR_7g073240 43.810 105 52 5 17 118 121 221 4.39e-16 77.4
MS.gene025614.t1 MTR_4g028130 40.541 111 59 5 17 124 314 420 1.45e-15 76.6
MS.gene025614.t1 MTR_4g028130 40.541 111 59 5 17 124 314 420 1.68e-15 76.3
MS.gene025614.t1 MTR_5g075410 39.167 120 62 6 17 131 321 434 2.21e-15 75.9
MS.gene025614.t1 MTR_4g028130 40.541 111 59 5 17 124 314 420 2.80e-15 75.5
MS.gene025614.t1 MTR_2g011940 37.190 121 69 5 1 118 336 452 3.35e-15 75.5
MS.gene025614.t1 MTR_2g011940 37.190 121 69 5 1 118 327 443 3.45e-15 75.5
MS.gene025614.t1 MTR_2g011940 37.190 121 69 5 1 118 336 452 4.35e-15 75.1
MS.gene025614.t1 MTR_3g467380 36.170 141 78 6 17 149 338 474 2.98e-14 72.8
MS.gene025614.t1 MTR_1g094960 40.000 95 55 2 12 104 112 206 1.43e-12 67.4
MS.gene025614.t1 MTR_8g101360 36.937 111 66 3 10 118 127 235 2.29e-12 67.0
MS.gene025614.t1 MTR_3g073420 33.083 133 78 5 9 137 108 233 3.92e-12 66.2
MS.gene025614.t1 MTR_2g094570 36.842 114 68 3 7 118 97 208 4.52e-12 66.2
MS.gene025614.t1 MTR_2g094570 36.842 114 68 3 7 118 153 264 5.08e-12 65.9
MS.gene025614.t1 MTR_2g094570 36.842 114 68 3 7 118 97 208 6.09e-12 65.9
MS.gene025614.t1 MTR_2g014770 37.168 113 69 2 4 114 144 256 3.29e-11 63.5
MS.gene025614.t1 MTR_2g014770 37.168 113 69 2 4 114 144 256 4.39e-11 63.2
MS.gene025614.t1 MTR_4g088210 36.937 111 68 2 6 114 136 246 4.85e-11 63.2
MS.gene025614.t1 MTR_4g088210 36.937 111 68 2 6 114 136 246 5.11e-11 62.8
MS.gene025614.t1 MTR_5g040880 34.615 104 66 2 3 104 98 201 8.00e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025614.t1 AT5G06250 49.784 231 94 5 11 226 39 262 8.16e-70 216
MS.gene025614.t1 AT5G06250 50.218 229 90 5 11 223 39 259 4.76e-69 214
MS.gene025614.t1 AT5G06250 50.218 229 90 5 11 223 39 259 5.16e-69 214
MS.gene025614.t1 AT5G06250 48.918 231 75 4 11 223 39 244 1.68e-65 205
MS.gene025614.t1 AT5G06250 48.918 231 75 4 11 223 39 244 2.17e-65 205
MS.gene025614.t1 AT3G11580 51.923 208 80 4 13 206 24 225 8.76e-63 198
MS.gene025614.t1 AT2G36080 57.711 201 46 6 12 208 32 197 2.45e-62 196
MS.gene025614.t1 AT2G36080 57.711 201 46 6 12 208 32 197 3.10e-62 196
MS.gene025614.t1 AT3G11580 51.923 208 80 4 13 206 24 225 3.91e-62 199
MS.gene025614.t1 AT2G36080 80.357 112 18 1 12 119 32 143 1.19e-57 182
MS.gene025614.t1 AT2G36080 80.357 112 18 1 12 119 32 143 1.19e-57 182
MS.gene025614.t1 AT3G11580 73.109 119 20 1 13 119 24 142 1.68e-57 183
MS.gene025614.t1 AT3G11580 73.109 119 20 1 13 119 24 142 1.68e-57 183
MS.gene025614.t1 AT3G11580 73.109 119 20 1 13 119 24 142 1.68e-57 183
MS.gene025614.t1 AT3G61970 71.795 117 29 1 7 119 12 128 3.15e-54 177
MS.gene025614.t1 AT2G46870 68.852 122 33 3 3 119 19 140 2.32e-50 167
MS.gene025614.t1 AT1G01030 46.018 226 91 7 13 208 51 275 3.00e-48 163
MS.gene025614.t1 AT1G13260 68.468 111 33 1 15 123 185 295 4.43e-48 162
MS.gene025614.t1 AT1G01030 69.369 111 30 2 13 119 51 161 6.21e-47 160
MS.gene025614.t1 AT1G68840 60.630 127 47 1 14 137 184 310 1.84e-46 159
MS.gene025614.t1 AT1G68840 60.630 127 47 1 14 137 184 310 1.84e-46 159
MS.gene025614.t1 AT3G25730 63.063 111 37 1 15 121 180 290 4.27e-45 154
MS.gene025614.t1 AT4G01500 39.918 243 95 5 10 202 28 269 4.65e-43 149
MS.gene025614.t1 AT1G25560 57.812 128 41 2 14 132 191 314 1.90e-42 148
MS.gene025614.t1 AT1G51120 47.368 95 41 1 17 102 177 271 9.89e-25 101
MS.gene025614.t1 AT1G50680 45.918 98 41 1 17 102 156 253 7.49e-24 98.6
MS.gene025614.t1 AT4G32010 40.179 112 60 5 17 125 285 392 2.33e-15 75.9
MS.gene025614.t1 AT4G32010 40.179 112 60 5 17 125 281 388 2.51e-15 75.9
MS.gene025614.t1 AT2G30470 40.952 105 56 4 17 119 294 394 7.48e-15 74.3
MS.gene025614.t1 AT1G77850 35.455 110 67 2 11 118 112 219 6.48e-13 68.6
MS.gene025614.t1 AT1G77850 35.455 110 67 2 11 118 112 219 6.71e-13 68.6
MS.gene025614.t1 AT1G35240 37.931 116 69 3 18 131 126 240 2.44e-12 67.0
MS.gene025614.t1 AT1G35520 37.069 116 70 3 18 131 126 240 1.49e-11 64.7
MS.gene025614.t1 AT1G34310 36.207 116 71 3 18 131 126 240 1.90e-11 64.3
MS.gene025614.t1 AT2G28350 35.652 115 72 2 12 124 109 223 6.26e-11 62.8
MS.gene025614.t1 AT2G28350 35.652 115 72 2 12 124 109 223 6.36e-11 62.8
MS.gene025614.t1 AT1G34410 33.884 121 67 4 18 131 126 240 8.82e-11 62.4

Find 75 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACGTCGCTTGGTGTTAA+TGG 0.127068 7.3:-9162219 None:intergenic
TTGATTGAATCTAGCTAATA+TGG 0.221602 7.3:-9163767 None:intergenic
AGCAATCTGGTGACAAAGTT+TGG 0.259112 7.3:-9163640 None:intergenic
TATCTCTCAGCATGTTGTTT+TGG 0.292618 7.3:-9162264 None:intergenic
GGAGGTTCCGGTATTCATAT+TGG 0.328744 7.3:+9162355 MS.gene025614:CDS
TCCAGGGTGCTGAGGCTGTT+TGG 0.331988 7.3:+9163560 MS.gene025614:CDS
TTAATATTAATATTATTATC+AGG 0.333871 7.3:-9163602 None:intergenic
CAGGTAAGTGTTGGAGGTTC+CGG 0.351251 7.3:+9162343 MS.gene025614:CDS
TGTGGTTGTGTTCTGACTTT+GGG 0.369690 7.3:-9163513 None:intergenic
CAAAGCTATGTTCTTACAAA+AGG 0.401403 7.3:+9162387 MS.gene025614:CDS
GAAATAGTTCGAGTACTTCC+AGG 0.409986 7.3:+9163543 MS.gene025614:CDS
GAGGTTGACGGTGGAGGTGG+TGG 0.410580 7.3:-9163709 None:intergenic
TTCAACTTCCCTACGTCGCT+TGG 0.425371 7.3:-9162228 None:intergenic
TTGAAGGAGGTTGACGGTGG+AGG 0.432392 7.3:-9163715 None:intergenic
GCAATCTGGTGACAAAGTTT+GGG 0.439412 7.3:-9163639 None:intergenic
AAGGAGGTTGACGGTGGAGG+TGG 0.440000 7.3:-9163712 None:intergenic
TGGAGGTGGTGGTAGAATTG+TGG 0.441638 7.3:-9163698 None:intergenic
GGATGATGATGAGTAGGATA+AGG 0.453506 7.3:-9162633 None:intergenic
GTGTGGTTGTGTTCTGACTT+TGG 0.459825 7.3:-9163514 None:intergenic
AGGATGAGTCAGGTAAGTGT+TGG 0.475422 7.3:+9162334 MS.gene025614:CDS
GCTATGTTCTTACAAAAGGT+TGG 0.477263 7.3:+9162391 MS.gene025614:CDS
GAGGATTTGAAGGAGGTTGA+CGG 0.478467 7.3:-9163721 None:intergenic
GGAGGTGGTGGTAGAATTGT+GGG 0.483601 7.3:-9163697 None:intergenic
TATTAATATTATTATCAGGT+TGG 0.493103 7.3:-9163598 None:intergenic
TACTGTTCCAATATGAATAC+CGG 0.505382 7.3:-9162362 None:intergenic
CCATCTGTAGTGATGGCAAT+GGG 0.515422 7.3:+9162556 MS.gene025614:CDS
GACATATTATAAGAGCAATC+TGG 0.517703 7.3:-9163653 None:intergenic
ATGCGCAGGATAGAGTTCTC+TGG 0.519337 7.3:-9162610 None:intergenic
ATCTCGTGGAGGCGCCGCCA+TGG 0.519364 7.3:+9162498 MS.gene025614:CDS
CCCATTGCCATCACTACAGA+TGG 0.522140 7.3:-9162556 None:intergenic
TGTAGTGATGGCAATGGGAA+TGG 0.522719 7.3:+9162561 MS.gene025614:CDS
TTGATTTCTTCTGAGTCTAG+TGG 0.523246 7.3:-9162291 None:intergenic
ATGAGTCAGGTAAGTGTTGG+AGG 0.531766 7.3:+9162337 MS.gene025614:CDS
TGATTTCTTCTGAGTCTAGT+GGG 0.531823 7.3:-9162290 None:intergenic
ATGTGATGGTGAGGATTTGA+AGG 0.538757 7.3:-9163731 None:intergenic
TGGGAATAGCACTGTTCCTG+TGG 0.547485 7.3:+9162581 MS.gene025614:CDS
CCATTAACACCAAGCGACGT+AGG 0.548021 7.3:+9162219 MS.gene025614:CDS
CATCCCTTGTCATACCATGC+AGG 0.555918 7.3:+9162651 MS.gene025614:CDS
AGCAGATCCATCTGTAGTGA+TGG 0.561002 7.3:+9162549 MS.gene025614:CDS
CATTAACACCAAGCGACGTA+GGG 0.563833 7.3:+9162220 MS.gene025614:CDS
ATAGCACTGTTCCTGTGGGG+TGG 0.568873 7.3:+9162586 MS.gene025614:CDS
TCCAAACAGCCTCAGCACCC+TGG 0.570047 7.3:-9163561 None:intergenic
AGTTCTCTGGACCACCCCAC+AGG 0.570942 7.3:-9162597 None:intergenic
AAAGATAAACGTCTTGATGC+TGG 0.575473 7.3:+9162426 MS.gene025614:CDS
GTAGTGATGGCAATGGGAAT+GGG 0.579455 7.3:+9162562 MS.gene025614:CDS
GATTTGAAGGAGGTTGACGG+TGG 0.580120 7.3:-9163718 None:intergenic
TGAGTAGGATAAGGATGCGC+AGG 0.580460 7.3:-9162624 None:intergenic
ATGGATCTGCTAACATGAGC+CGG 0.583256 7.3:-9162537 None:intergenic
CGAGTACTTCCAGGGTGCTG+AGG 0.583570 7.3:+9163552 MS.gene025614:CDS
TGGTAGTAACTCTACTCCAC+CGG 0.584083 7.3:+9162518 MS.gene025614:CDS
GACAAGGGATGATGATGAGT+AGG 0.585445 7.3:-9162639 None:intergenic
CTCAACGGTTGTTTATCTCG+TGG 0.587033 7.3:+9162484 MS.gene025614:CDS
GAGGCTGTTTGGAGTGAACA+TGG 0.594809 7.3:+9163571 MS.gene025614:CDS
TCCATCTGTAGTGATGGCAA+TGG 0.596273 7.3:+9162555 MS.gene025614:CDS
GGGAATAGCACTGTTCCTGT+GGG 0.597826 7.3:+9162582 MS.gene025614:CDS
CGAACTATTTCCACAAGGTG+TGG 0.598711 7.3:-9163531 None:intergenic
CTAGACTCAGAAGAAATCAA+AGG 0.611927 7.3:+9162294 MS.gene025614:CDS
AACGGTTGTTTATCTCGTGG+AGG 0.625722 7.3:+9162487 MS.gene025614:CDS
CAGAACACAACCACACCTTG+TGG 0.630986 7.3:+9163521 MS.gene025614:CDS
GTTGTTGACGTAGCATGTGA+TGG 0.636988 7.3:-9163745 None:intergenic
AAAACCTGCATGGTATGACA+AGG 0.637700 7.3:-9162655 None:intergenic
TGATGGTGAGGATTTGAAGG+AGG 0.642677 7.3:-9163728 None:intergenic
AAATAGTTCGAGTACTTCCA+GGG 0.668571 7.3:+9163544 MS.gene025614:CDS
GTTGTAATGTGACAGGTGAA+GGG 0.678694 7.3:+9163489 MS.gene025614:intron
TGACGTAGCATGTGATGGTG+AGG 0.679050 7.3:-9163740 None:intergenic
AAACCTGCATGGTATGACAA+GGG 0.685749 7.3:-9162654 None:intergenic
CACGAGATAAACAACCGTTG+AGG 0.688403 7.3:-9162483 None:intergenic
GACACCGTGTACATCCTCAA+CGG 0.690188 7.3:+9162469 MS.gene025614:CDS
TATAATATGTCATCAACACA+AGG 0.697764 7.3:+9163665 MS.gene025614:CDS
ACAACCGTTGAGGATGTACA+CGG 0.701448 7.3:-9162473 None:intergenic
GATCTGCTAACATGAGCCGG+TGG 0.708271 7.3:-9162534 None:intergenic
GGAATAGCACTGTTCCTGTG+GGG 0.714296 7.3:+9162583 MS.gene025614:CDS
GTGGAGTAGAGTTACTACCA+TGG 0.729540 7.3:-9162515 None:intergenic
GTACTCGAACTATTTCCACA+AGG 0.735032 7.3:-9163536 None:intergenic
GAGTAGAGTTACTACCATGG+CGG 0.790463 7.3:-9162512 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAAACCATAAATAAATA+CGG - chr7.3:9163426-9163445 None:intergenic 15.0%
!! TATTAATATTATTATCAGGT+TGG - chr7.3:9163601-9163620 None:intergenic 15.0%
!!! ATATTCAATATTTTACTTAG+AGG + chr7.3:9162728-9162747 MS.gene025614:intron 15.0%
!! AAATTAAATTCAACAAAAGC+AGG - chr7.3:9163290-9163309 None:intergenic 20.0%
!! ATTCTATTACAAATTTCAGA+TGG + chr7.3:9163084-9163103 MS.gene025614:intron 20.0%
!! TGAATTGAAAATGAATGTAT+GGG + chr7.3:9163455-9163474 MS.gene025614:intron 20.0%
!! TTGAATTGAAAATGAATGTA+TGG + chr7.3:9163454-9163473 MS.gene025614:intron 20.0%
! ATGTACATAAGAGATTATAG+TGG - chr7.3:9162688-9162707 None:intergenic 25.0%
! ATTGTTTAGACGAAAAGTTT+AGG - chr7.3:9162892-9162911 None:intergenic 25.0%
! TAGTAATTTGAATTTCCCAT+GGG + chr7.3:9163043-9163062 MS.gene025614:intron 25.0%
! TATAATATGTCATCAACACA+AGG + chr7.3:9163665-9163684 MS.gene025614:CDS 25.0%
! TATTACAAATTTCAGATGGA+TGG + chr7.3:9163088-9163107 MS.gene025614:intron 25.0%
! TATTAGACGATTGTTTATCA+CGG - chr7.3:9162788-9162807 None:intergenic 25.0%
!! GCATTTTCCGTATTTATTTA+TGG + chr7.3:9163416-9163435 MS.gene025614:intron 25.0%
!! TTAACGTTTTCAACGTTAAA+AGG + chr7.3:9163328-9163347 MS.gene025614:intron 25.0%
AAAACATACATGCAACACAA+TGG - chr7.3:9163115-9163134 None:intergenic 30.0%
ACTGACAATATATATACCCA+TGG - chr7.3:9163062-9163081 None:intergenic 30.0%
CAAAGCTATGTTCTTACAAA+AGG + chr7.3:9162387-9162406 MS.gene025614:CDS 30.0%
CTAGTAATTTGAATTTCCCA+TGG + chr7.3:9163042-9163061 MS.gene025614:intron 30.0%
CTGACAATATATATACCCAT+GGG - chr7.3:9163061-9163080 None:intergenic 30.0%
GACATATTATAAGAGCAATC+TGG - chr7.3:9163656-9163675 None:intergenic 30.0%
TACTGTTCCAATATGAATAC+CGG - chr7.3:9162365-9162384 None:intergenic 30.0%
TTAGACGAAAAGTTTAGGAA+GGG - chr7.3:9162887-9162906 None:intergenic 30.0%
TTTAGACGAAAAGTTTAGGA+AGG - chr7.3:9162888-9162907 None:intergenic 30.0%
!! CATAAGAGATTATAGTGGAT+AGG - chr7.3:9162683-9162702 None:intergenic 30.0%
!!! AGGTTTGTTACTAAGTTTTG+AGG + chr7.3:9162314-9162333 MS.gene025614:CDS 30.0%
AAAGATAAACGTCTTGATGC+TGG + chr7.3:9162426-9162445 MS.gene025614:CDS 35.0%
AAATAGTTCGAGTACTTCCA+GGG + chr7.3:9163544-9163563 MS.gene025614:CDS 35.0%
AAGGGTAACTTCCAGTTATT+TGG + chr7.3:9163174-9163193 MS.gene025614:intron 35.0%
AGGGTAACTTCCAGTTATTT+GGG + chr7.3:9163175-9163194 MS.gene025614:intron 35.0%
ATAATGTGACCTAAAGTGTG+TGG + chr7.3:9163247-9163266 MS.gene025614:intron 35.0%
CTAGACTCAGAAGAAATCAA+AGG + chr7.3:9162294-9162313 MS.gene025614:CDS 35.0%
GCTATGTTCTTACAAAAGGT+TGG + chr7.3:9162391-9162410 MS.gene025614:CDS 35.0%
TGATTTCTTCTGAGTCTAGT+GGG - chr7.3:9162293-9162312 None:intergenic 35.0%
TTGATTTCTTCTGAGTCTAG+TGG - chr7.3:9162294-9162313 None:intergenic 35.0%
TTTCAACGTTAAAAGGTTGC+AGG + chr7.3:9163335-9163354 MS.gene025614:intron 35.0%
!! TATCTCTCAGCATGTTGTTT+TGG - chr7.3:9162267-9162286 None:intergenic 35.0%
!!! GTTGTTTTGGAATAACGAGT+CGG - chr7.3:9162254-9162273 None:intergenic 35.0%
AAAACCTGCATGGTATGACA+AGG - chr7.3:9162658-9162677 None:intergenic 40.0%
AAACCTGCATGGTATGACAA+GGG - chr7.3:9162657-9162676 None:intergenic 40.0%
AGCAATCTGGTGACAAAGTT+TGG - chr7.3:9163643-9163662 None:intergenic 40.0%
CTAATTACTCGTGCACTATG+TGG - chr7.3:9162941-9162960 None:intergenic 40.0%
GAAATAGTTCGAGTACTTCC+AGG + chr7.3:9163543-9163562 MS.gene025614:CDS 40.0%
GCAATCTGGTGACAAAGTTT+GGG - chr7.3:9163642-9163661 None:intergenic 40.0%
GTACTCGAACTATTTCCACA+AGG - chr7.3:9163539-9163558 None:intergenic 40.0%
GTTCGTTTCTTTCGCTTGTT+GGG + chr7.3:9163370-9163389 MS.gene025614:intron 40.0%
GTTGTAATGTGACAGGTGAA+GGG + chr7.3:9163489-9163508 MS.gene025614:intron 40.0%
TGGATAGGTAAAAACCTGCA+TGG - chr7.3:9162668-9162687 None:intergenic 40.0%
TGTGGTTGTGTTCTGACTTT+GGG - chr7.3:9163516-9163535 None:intergenic 40.0%
TGTTCGTTTCTTTCGCTTGT+TGG + chr7.3:9163369-9163388 MS.gene025614:intron 40.0%
TGTTGTAATGTGACAGGTGA+AGG + chr7.3:9163488-9163507 MS.gene025614:intron 40.0%
! ACTTCCAGTTATTTGGGACT+TGG + chr7.3:9163181-9163200 MS.gene025614:intron 40.0%
! ATGTGATGGTGAGGATTTGA+AGG - chr7.3:9163734-9163753 None:intergenic 40.0%
! GGATGATGATGAGTAGGATA+AGG - chr7.3:9162636-9162655 None:intergenic 40.0%
!!! CTAAGTTTTGAGGATGAGTC+AGG + chr7.3:9162324-9162343 MS.gene025614:CDS 40.0%
AACGGTTGTTTATCTCGTGG+AGG + chr7.3:9162487-9162506 MS.gene025614:CDS 45.0%
ACAACCGTTGAGGATGTACA+CGG - chr7.3:9162476-9162495 None:intergenic 45.0%
AGCAGATCCATCTGTAGTGA+TGG + chr7.3:9162549-9162568 MS.gene025614:CDS 45.0%
AGGATGAGTCAGGTAAGTGT+TGG + chr7.3:9162334-9162353 MS.gene025614:CDS 45.0%
ATGGATCTGCTAACATGAGC+CGG - chr7.3:9162540-9162559 None:intergenic 45.0%
CACGAGATAAACAACCGTTG+AGG - chr7.3:9162486-9162505 None:intergenic 45.0%
CATTAACACCAAGCGACGTA+GGG + chr7.3:9162220-9162239 MS.gene025614:CDS 45.0%
CCATCTGTAGTGATGGCAAT+GGG + chr7.3:9162556-9162575 MS.gene025614:CDS 45.0%
CGAACTATTTCCACAAGGTG+TGG - chr7.3:9163534-9163553 None:intergenic 45.0%
CTCAACGGTTGTTTATCTCG+TGG + chr7.3:9162484-9162503 MS.gene025614:CDS 45.0%
GAGGATTTGAAGGAGGTTGA+CGG - chr7.3:9163724-9163743 None:intergenic 45.0%
GAGTAGAGTTACTACCATGG+CGG - chr7.3:9162515-9162534 None:intergenic 45.0%
GGAGGTTCCGGTATTCATAT+TGG + chr7.3:9162355-9162374 MS.gene025614:CDS 45.0%
GTAGTGATGGCAATGGGAAT+GGG + chr7.3:9162562-9162581 MS.gene025614:CDS 45.0%
GTGGAGTAGAGTTACTACCA+TGG - chr7.3:9162518-9162537 None:intergenic 45.0%
GTGTGGTTGTGTTCTGACTT+TGG - chr7.3:9163517-9163536 None:intergenic 45.0%
GTTGTTGACGTAGCATGTGA+TGG - chr7.3:9163748-9163767 None:intergenic 45.0%
TCCATCTGTAGTGATGGCAA+TGG + chr7.3:9162555-9162574 MS.gene025614:CDS 45.0%
TCCTCCAAGTCCCAAATAAC+TGG - chr7.3:9163188-9163207 None:intergenic 45.0%
TGCACGTGTTGTAATGTGAC+AGG + chr7.3:9163482-9163501 MS.gene025614:intron 45.0%
TGGTAGTAACTCTACTCCAC+CGG + chr7.3:9162518-9162537 MS.gene025614:CDS 45.0%
TGTAGTGATGGCAATGGGAA+TGG + chr7.3:9162561-9162580 MS.gene025614:CDS 45.0%
! ATTTGGGACTTGGAGGAATG+AGG + chr7.3:9163191-9163210 MS.gene025614:intron 45.0%
! GACAAGGGATGATGATGAGT+AGG - chr7.3:9162642-9162661 None:intergenic 45.0%
! TCCAGTTATTTGGGACTTGG+AGG + chr7.3:9163184-9163203 MS.gene025614:intron 45.0%
! TGATGGTGAGGATTTGAAGG+AGG - chr7.3:9163731-9163750 None:intergenic 45.0%
!! ATGAGTCAGGTAAGTGTTGG+AGG + chr7.3:9162337-9162356 MS.gene025614:CDS 45.0%
!! TTAATATTAATATTATTATC+AGG - chr7.3:9163605-9163624 None:intergenic 5.0%
!!! ATTTTATTCTTTTAAATAAA+GGG + chr7.3:9163156-9163175 MS.gene025614:intron 5.0%
!!! TATTTTATTCTTTTAAATAA+AGG + chr7.3:9163155-9163174 MS.gene025614:intron 5.0%
ATGCGCAGGATAGAGTTCTC+TGG - chr7.3:9162613-9162632 None:intergenic 50.0%
CAGAACACAACCACACCTTG+TGG + chr7.3:9163521-9163540 MS.gene025614:CDS 50.0%
CATCCCTTGTCATACCATGC+AGG + chr7.3:9162651-9162670 MS.gene025614:CDS 50.0%
CCATTAACACCAAGCGACGT+AGG + chr7.3:9162219-9162238 MS.gene025614:CDS 50.0%
CCCATTGCCATCACTACAGA+TGG - chr7.3:9162559-9162578 None:intergenic 50.0%
GACACCGTGTACATCCTCAA+CGG + chr7.3:9162469-9162488 MS.gene025614:CDS 50.0%
GATTTGAAGGAGGTTGACGG+TGG - chr7.3:9163721-9163740 None:intergenic 50.0%
GGAATAGCACTGTTCCTGTG+GGG + chr7.3:9162583-9162602 MS.gene025614:CDS 50.0%
GGGAATAGCACTGTTCCTGT+GGG + chr7.3:9162582-9162601 MS.gene025614:CDS 50.0%
TGAGTAGGATAAGGATGCGC+AGG - chr7.3:9162627-9162646 None:intergenic 50.0%
TGGGAATAGCACTGTTCCTG+TGG + chr7.3:9162581-9162600 MS.gene025614:CDS 50.0%
TTCAACTTCCCTACGTCGCT+TGG - chr7.3:9162231-9162250 None:intergenic 50.0%
! GAGGCTGTTTGGAGTGAACA+TGG + chr7.3:9163571-9163590 MS.gene025614:CDS 50.0%
! GGAGGTGGTGGTAGAATTGT+GGG - chr7.3:9163700-9163719 None:intergenic 50.0%
! TGACGTAGCATGTGATGGTG+AGG - chr7.3:9163743-9163762 None:intergenic 50.0%
! TGGAGGTGGTGGTAGAATTG+TGG - chr7.3:9163701-9163720 None:intergenic 50.0%
!! CAGGTAAGTGTTGGAGGTTC+CGG + chr7.3:9162343-9162362 MS.gene025614:CDS 50.0%
!! CCTACGTCGCTTGGTGTTAA+TGG - chr7.3:9162222-9162241 None:intergenic 50.0%
ATAGCACTGTTCCTGTGGGG+TGG + chr7.3:9162586-9162605 MS.gene025614:CDS 55.0%
GATCTGCTAACATGAGCCGG+TGG - chr7.3:9162537-9162556 None:intergenic 55.0%
GGCTTCACGCCACACACTTT+AGG - chr7.3:9163259-9163278 None:intergenic 55.0%
TTGAAGGAGGTTGACGGTGG+AGG - chr7.3:9163718-9163737 None:intergenic 55.0%
AAGGAGGTTGACGGTGGAGG+TGG - chr7.3:9163715-9163734 None:intergenic 60.0%
AGTTCTCTGGACCACCCCAC+AGG - chr7.3:9162600-9162619 None:intergenic 60.0%
CAACAAAAGCAGGCGCGCGT+AGG - chr7.3:9163280-9163299 None:intergenic 60.0%
TCCAAACAGCCTCAGCACCC+TGG - chr7.3:9163564-9163583 None:intergenic 60.0%
!! CGAGTACTTCCAGGGTGCTG+AGG + chr7.3:9163552-9163571 MS.gene025614:CDS 60.0%
!! TCCAGGGTGCTGAGGCTGTT+TGG + chr7.3:9163560-9163579 MS.gene025614:CDS 60.0%
GAGGTTGACGGTGGAGGTGG+TGG - chr7.3:9163712-9163731 None:intergenic 65.0%
!! ATCTCGTGGAGGCGCCGCCA+TGG + chr7.3:9162498-9162517 MS.gene025614:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 9162159 9163775 9162159 ID=MS.gene025614
chr7.3 mRNA 9162159 9163775 9162159 ID=MS.gene025614.t1;Parent=MS.gene025614
chr7.3 exon 9162159 9162672 9162159 ID=MS.gene025614.t1.exon1;Parent=MS.gene025614.t1
chr7.3 CDS 9162159 9162672 9162159 ID=cds.MS.gene025614.t1;Parent=MS.gene025614.t1
chr7.3 exon 9163504 9163775 9163504 ID=MS.gene025614.t1.exon2;Parent=MS.gene025614.t1
chr7.3 CDS 9163504 9163775 9163504 ID=cds.MS.gene025614.t1;Parent=MS.gene025614.t1
Gene Sequence

>MS.gene025614

ATGAAACTAAAAACAACAGAAGCATCATCAGAAGAAGAGAAAGAAGCTATGTTCGAGAAACCATTAACACCAAGCGACGTAGGGAAGTTGAACCGACTCGTTATTCCAAAACAACATGCTGAGAGATATTTCCCACTAGACTCAGAAGAAATCAAAGGTTTGTTACTAAGTTTTGAGGATGAGTCAGGTAAGTGTTGGAGGTTCCGGTATTCATATTGGAACAGTAGTCAAAGCTATGTTCTTACAAAAGGTTGGAGTCGTTATGTTAAAGATAAACGTCTTGATGCTGGTGATGTTGTTTTGTTTCAAAGACACCGTGTACATCCTCAACGGTTGTTTATCTCGTGGAGGCGCCGCCATGGTAGTAACTCTACTCCACCGGCTCATGTTAGCAGATCCATCTGTAGTGATGGCAATGGGAATGGGAATAGCACTGTTCCTGTGGGGTGGTCCAGAGAACTCTATCCTGCGCATCCTTATCCTACTCATCATCATCCCTTGTCATACCATGCAGGTTTTTACCTATCCACTATAATCTCTTATGTACATTTCTAATTCATCATTCTCTCATATTCAATATTTTACTTAGAGGAGTAATTTTATATTTTAATTTTTTTTAAGAACATCCGTGATAAACAATCGTCTAATACTTCGTTTACTCATGTTTATTTTTTAAAATATTTTATATTAACTTTAATTTAAAAAAAAATAAATAAAAATAAGTTCCCTTCCTAAACTTTTCGTCTAAACAATCTTTTATCATTTAAGTTATACTTACTCCACATAGTGCACGAGTAATTAGTCTTAAGATTTGAGTATCACGCTAAAAGACATTTTGCATTATTTAAAAAACAATTACTATGAGAGTAGTAAATAGACTTGACTAGTAATTTGAATTTCCCATGGGTATATATATTGTCAGTAAATTCTATTACAAATTTCAGATGGATGGTCCATTGTGTTGCATGTATGTTTTCTTTTATTTATTTAAACTTTTATTTTATTCTTTTAAATAAAGGGTAACTTCCAGTTATTTGGGACTTGGAGGAATGAGGACACACTAGCTAACATTTGTTTATAATTTCAGAATAATGTGACCTAAAGTGTGTGGCGTGAAGCCTACGCGCGCCTGCTTTTGTTGAATTTAATTTAACATAGTAAAAGTAAAATTAACGTTTTCAACGTTAAAAGGTTGCAGGACATGTTCATTTGTTCGTTTCTTTCGCTTGTTGGGTCTTGATCAATAGAAATTTAAATGCATTTTCCGTATTTATTTATGGTTTTGATTTGATTTTTTGAATTGAAAATGAATGTATGGGCATTTGCACGTGTTGTAATGTGACAGGTGAAGGGTCCCAAAGTCAGAACACAACCACACCTTGTGGAAATAGTTCGAGTACTTCCAGGGTGCTGAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATAATATTAATATTAACAATATTAATGATTCCCAAACTTTGTCACCAGATTGCTCTTATAATATGTCATCAACACAAGGCACAGCTATCCCACAATTCTACCACCACCTCCACCGTCAACCTCCTTCAAATCCTCACCATCACATGCTACGTCAACAACCATATTAG
Protein sequence

>MS.gene025614.t1

MKLKTTEASSEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEEIKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRVHPQRLFISWRRRHGSNSTPPAHVSRSICSDGNGNGNSTVPVGWSRELYPAHPYPTHHHPLSYHAGEGSQSQNTTTPCGNSSSTSRVLRLFGVNMECQPDNNININNINDSQTLSPDCSYNMSSTQGTAIPQFYHHLHRQPPSNPHHHMLRQQPY