AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025615

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025615.t1 MTR_7g105370 91.205 307 18 5 1 303 1 302 1.91e-180 499
MS.gene025615.t1 MTR_1g058350 56.287 334 84 14 11 298 6 323 8.30e-98 291
MS.gene025615.t1 MTR_8g023990 65.414 133 43 2 36 165 148 280 7.50e-52 178
MS.gene025615.t1 MTR_7g117455 73.585 106 25 2 59 161 117 222 7.06e-48 166
MS.gene025615.t1 MTR_5g053920 60.484 124 40 1 51 165 186 309 1.29e-45 158
MS.gene025615.t1 MTR_1g093600 57.143 126 40 1 50 161 182 307 3.28e-41 147
MS.gene025615.t1 MTR_1g116920 45.802 131 53 4 57 183 159 275 8.82e-29 112
MS.gene025615.t1 MTR_7g073240 43.810 105 52 5 59 160 121 221 4.60e-16 78.2
MS.gene025615.t1 MTR_4g028130 40.541 111 59 5 59 166 314 420 1.81e-15 77.4
MS.gene025615.t1 MTR_4g028130 40.541 111 59 5 59 166 314 420 2.09e-15 77.0
MS.gene025615.t1 MTR_5g075410 41.121 107 53 5 59 161 321 421 3.24e-15 76.3
MS.gene025615.t1 MTR_4g028130 40.541 111 59 5 59 166 314 420 3.96e-15 76.3
MS.gene025615.t1 MTR_2g011940 37.190 121 69 5 43 160 327 443 5.36e-15 75.9
MS.gene025615.t1 MTR_2g011940 37.190 121 69 5 43 160 336 452 5.91e-15 75.5
MS.gene025615.t1 MTR_2g011940 37.190 121 69 5 43 160 336 452 7.84e-15 75.1
MS.gene025615.t1 MTR_3g467380 36.170 141 78 6 59 191 338 474 4.71e-14 73.2
MS.gene025615.t1 MTR_8g101360 34.848 132 77 4 31 160 111 235 6.50e-14 72.8
MS.gene025615.t1 MTR_1g094960 40.000 95 55 2 54 146 112 206 1.54e-12 68.2
MS.gene025615.t1 MTR_3g073420 33.083 133 78 5 51 179 108 233 3.56e-12 67.0
MS.gene025615.t1 MTR_2g094570 36.842 114 68 3 49 160 97 208 4.59e-12 67.0
MS.gene025615.t1 MTR_2g094570 36.842 114 68 3 49 160 153 264 5.13e-12 66.6
MS.gene025615.t1 MTR_2g094570 36.842 114 68 3 49 160 97 208 5.45e-12 66.6
MS.gene025615.t1 MTR_2g014770 33.813 139 84 3 20 156 124 256 7.19e-12 66.2
MS.gene025615.t1 MTR_2g014770 33.813 139 84 3 20 156 124 256 9.28e-12 65.9
MS.gene025615.t1 MTR_4g124900 34.884 129 75 4 34 160 105 226 1.04e-11 65.9
MS.gene025615.t1 MTR_4g124900 34.884 129 75 4 34 160 105 226 1.12e-11 65.9
MS.gene025615.t1 MTR_2g043250 34.884 129 75 4 34 160 105 226 2.14e-11 65.1
MS.gene025615.t1 MTR_4g088210 36.937 111 68 2 48 156 136 246 7.36e-11 63.2
MS.gene025615.t1 MTR_4g088210 36.937 111 68 2 48 156 136 246 7.74e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025615.t1 AT5G06250 44.599 287 115 8 1 268 1 262 8.50e-70 218
MS.gene025615.t1 AT5G06250 45.070 284 112 8 1 265 1 259 4.29e-69 216
MS.gene025615.t1 AT5G06250 45.070 284 112 8 1 265 1 259 4.56e-69 216
MS.gene025615.t1 AT5G06250 43.902 287 96 7 1 265 1 244 2.66e-65 206
MS.gene025615.t1 AT5G06250 43.902 287 96 7 1 265 1 244 2.85e-65 206
MS.gene025615.t1 AT3G11580 51.923 208 80 4 55 248 24 225 2.73e-62 198
MS.gene025615.t1 AT2G36080 57.711 201 46 6 54 250 32 197 6.06e-62 197
MS.gene025615.t1 AT2G36080 57.711 201 46 6 54 250 32 197 6.10e-62 196
MS.gene025615.t1 AT3G11580 51.923 208 80 4 55 248 24 225 1.84e-61 199
MS.gene025615.t1 AT2G36080 80.357 112 18 1 54 161 32 143 1.76e-57 183
MS.gene025615.t1 AT2G36080 80.357 112 18 1 54 161 32 143 1.76e-57 183
MS.gene025615.t1 AT3G11580 73.109 119 20 1 55 161 24 142 3.52e-57 184
MS.gene025615.t1 AT3G11580 73.109 119 20 1 55 161 24 142 3.52e-57 184
MS.gene025615.t1 AT3G11580 73.109 119 20 1 55 161 24 142 3.52e-57 184
MS.gene025615.t1 AT3G61970 71.795 117 29 1 49 161 12 128 8.70e-54 177
MS.gene025615.t1 AT2G46870 66.929 127 37 3 40 161 14 140 6.78e-50 168
MS.gene025615.t1 AT1G01030 46.018 226 91 7 55 250 51 275 5.23e-48 164
MS.gene025615.t1 AT1G13260 68.468 111 33 1 57 165 185 295 8.31e-48 163
MS.gene025615.t1 AT1G01030 69.369 111 30 2 55 161 51 161 2.23e-46 160
MS.gene025615.t1 AT1G68840 60.630 127 47 1 56 179 184 310 5.43e-46 159
MS.gene025615.t1 AT1G68840 60.630 127 47 1 56 179 184 310 5.43e-46 159
MS.gene025615.t1 AT3G25730 63.063 111 37 1 57 163 180 290 1.06e-44 155
MS.gene025615.t1 AT4G01500 39.918 243 95 5 52 244 28 269 7.63e-43 150
MS.gene025615.t1 AT1G25560 57.812 128 41 2 56 174 191 314 3.84e-42 149
MS.gene025615.t1 AT1G51120 47.368 95 41 1 59 144 177 271 2.14e-24 101
MS.gene025615.t1 AT1G50680 45.918 98 41 1 59 144 156 253 1.55e-23 99.0
MS.gene025615.t1 AT4G32010 40.179 112 60 5 59 167 285 392 3.36e-15 76.6
MS.gene025615.t1 AT4G32010 40.179 112 60 5 59 167 281 388 3.45e-15 76.3
MS.gene025615.t1 AT2G30470 40.952 105 56 4 59 161 294 394 9.40e-15 75.1
MS.gene025615.t1 AT1G77850 35.455 110 67 2 53 160 112 219 5.66e-13 69.7
MS.gene025615.t1 AT1G77850 35.455 110 67 2 53 160 112 219 5.82e-13 69.7
MS.gene025615.t1 AT1G35240 37.931 116 69 3 60 173 126 240 2.15e-12 67.8
MS.gene025615.t1 AT2G28350 32.624 141 92 3 28 166 84 223 7.04e-12 66.2
MS.gene025615.t1 AT2G28350 32.624 141 92 3 28 166 84 223 7.06e-12 66.2
MS.gene025615.t1 AT1G35520 37.069 116 70 3 60 173 126 240 1.60e-11 65.1
MS.gene025615.t1 AT1G34310 36.207 116 71 3 60 173 126 240 2.06e-11 64.7
MS.gene025615.t1 AT1G34410 33.884 121 67 4 60 173 126 240 9.46e-11 62.8

Find 79 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACGTCGCTTGGTGTTAA+TGG 0.127068 7.3:-9108513 None:intergenic
TTGATTGAATCTAGCTAATA+TGG 0.221602 7.3:-9110061 None:intergenic
AGCAATCTGGTGACAAAGTT+TGG 0.259112 7.3:-9109934 None:intergenic
TATCTCTCAGCATGTTGTTT+TGG 0.292618 7.3:-9108558 None:intergenic
GGAGGTTCCGGTATTCATAT+TGG 0.328744 7.3:+9108649 MS.gene025615:CDS
TCCAGGGTGCTGAGGCTGTT+TGG 0.331988 7.3:+9109854 MS.gene025615:CDS
TTAATATTAATATTATTATC+AGG 0.333871 7.3:-9109896 None:intergenic
CAGGTAAGTGTTGGAGGTTC+CGG 0.351251 7.3:+9108637 MS.gene025615:CDS
TGTGGTTGTGTTCTGACTTT+GGG 0.369690 7.3:-9109807 None:intergenic
CAAAGCTATGTTCTTACAAA+AGG 0.401403 7.3:+9108681 MS.gene025615:CDS
GAAATAGTTCGAGTACTTCC+AGG 0.409986 7.3:+9109837 MS.gene025615:CDS
GAGGTTGACGGTGGAGGTGG+TGG 0.410580 7.3:-9110003 None:intergenic
TTCAACTTCCCTACGTCGCT+TGG 0.425371 7.3:-9108522 None:intergenic
TTGAAGGAGGTTGACGGTGG+AGG 0.432392 7.3:-9110009 None:intergenic
GCAATCTGGTGACAAAGTTT+GGG 0.439412 7.3:-9109933 None:intergenic
AAGGAGGTTGACGGTGGAGG+TGG 0.440000 7.3:-9110006 None:intergenic
TGGAGGTGGTGGTAGAATTG+TGG 0.441638 7.3:-9109992 None:intergenic
TACAAGAAACAACATCACTA+TGG 0.450273 7.3:+9108346 MS.gene025615:CDS
GGATGATGATGAGTAGGATA+AGG 0.453506 7.3:-9108927 None:intergenic
GTGTGGTTGTGTTCTGACTT+TGG 0.459825 7.3:-9109808 None:intergenic
AGGATGAGTCAGGTAAGTGT+TGG 0.475422 7.3:+9108628 MS.gene025615:CDS
GCTATGTTCTTACAAAAGGT+TGG 0.477263 7.3:+9108685 MS.gene025615:CDS
GAGGATTTGAAGGAGGTTGA+CGG 0.478467 7.3:-9110015 None:intergenic
GGAGGTGGTGGTAGAATTGT+GGG 0.483601 7.3:-9109991 None:intergenic
TATTAATATTATTATCAGGT+TGG 0.493103 7.3:-9109892 None:intergenic
TACTGTTCCAATATGAATAC+CGG 0.505382 7.3:-9108656 None:intergenic
CCATCTGTAGTGATGGCAAT+GGG 0.515422 7.3:+9108850 MS.gene025615:CDS
GACATATTATAAGAGCAATC+TGG 0.517703 7.3:-9109947 None:intergenic
ATGCGCAGGATAGAGTTCTC+TGG 0.519337 7.3:-9108904 None:intergenic
ATCTCGTGGAGGCGCCGCCA+TGG 0.519364 7.3:+9108792 MS.gene025615:CDS
CCCATTGCCATCACTACAGA+TGG 0.522140 7.3:-9108850 None:intergenic
TGTAGTGATGGCAATGGGAA+TGG 0.522719 7.3:+9108855 MS.gene025615:CDS
TTGATTTCTTCTGAGTCTAG+TGG 0.523246 7.3:-9108585 None:intergenic
ATGAGTCAGGTAAGTGTTGG+AGG 0.531766 7.3:+9108631 MS.gene025615:CDS
TGATTTCTTCTGAGTCTAGT+GGG 0.531823 7.3:-9108584 None:intergenic
ATGTGATGGTGAGGATTTGA+AGG 0.538757 7.3:-9110025 None:intergenic
TGGGAATAGCACTGTTCCTG+TGG 0.547485 7.3:+9108875 MS.gene025615:CDS
CCATTAACACCAAGCGACGT+AGG 0.548021 7.3:+9108513 MS.gene025615:CDS
CATCCCTTGTCATACCATGC+AGG 0.555918 7.3:+9108945 MS.gene025615:CDS
AGCAGATCCATCTGTAGTGA+TGG 0.561002 7.3:+9108843 MS.gene025615:CDS
CATTAACACCAAGCGACGTA+GGG 0.563833 7.3:+9108514 MS.gene025615:CDS
ATAGCACTGTTCCTGTGGGG+TGG 0.568873 7.3:+9108880 MS.gene025615:CDS
TCCAAACAGCCTCAGCACCC+TGG 0.570047 7.3:-9109855 None:intergenic
AGTTCTCTGGACCACCCCAC+AGG 0.570942 7.3:-9108891 None:intergenic
AAAGATAAACGTCTTGATGC+TGG 0.575473 7.3:+9108720 MS.gene025615:CDS
ATGTTGTTTCTTGTATTGTG+TGG 0.576167 7.3:-9108338 None:intergenic
GTAGTGATGGCAATGGGAAT+GGG 0.579455 7.3:+9108856 MS.gene025615:CDS
GATTTGAAGGAGGTTGACGG+TGG 0.580120 7.3:-9110012 None:intergenic
TGAGTAGGATAAGGATGCGC+AGG 0.580460 7.3:-9108918 None:intergenic
ATGGATCTGCTAACATGAGC+CGG 0.583256 7.3:-9108831 None:intergenic
CGAGTACTTCCAGGGTGCTG+AGG 0.583570 7.3:+9109846 MS.gene025615:CDS
TGGTAGTAACTCTACTCCAC+CGG 0.584083 7.3:+9108812 MS.gene025615:CDS
GACAAGGGATGATGATGAGT+AGG 0.585445 7.3:-9108933 None:intergenic
CTCAACGGTTGTTTATCTCG+TGG 0.587033 7.3:+9108778 MS.gene025615:CDS
GAGGCTGTTTGGAGTGAACA+TGG 0.594809 7.3:+9109865 MS.gene025615:CDS
TCCATCTGTAGTGATGGCAA+TGG 0.596273 7.3:+9108849 MS.gene025615:CDS
GGGAATAGCACTGTTCCTGT+GGG 0.597826 7.3:+9108876 MS.gene025615:CDS
CGAACTATTTCCACAAGGTG+TGG 0.598711 7.3:-9109825 None:intergenic
AGCTGAACTAGAAGATGATG+TGG 0.605647 7.3:+9108416 MS.gene025615:CDS
AAGAAACAACATCACTATGG+TGG 0.609594 7.3:+9108349 MS.gene025615:CDS
CTAGACTCAGAAGAAATCAA+AGG 0.611927 7.3:+9108588 MS.gene025615:CDS
AACGGTTGTTTATCTCGTGG+AGG 0.625722 7.3:+9108781 MS.gene025615:CDS
CAGAACACAACCACACCTTG+TGG 0.630986 7.3:+9109815 MS.gene025615:CDS
GTTGTTGACGTAGCATGTGA+TGG 0.636988 7.3:-9110039 None:intergenic
AAAACCTGCATGGTATGACA+AGG 0.637700 7.3:-9108949 None:intergenic
TGATGGTGAGGATTTGAAGG+AGG 0.642677 7.3:-9110022 None:intergenic
AAATAGTTCGAGTACTTCCA+GGG 0.668571 7.3:+9109838 MS.gene025615:CDS
GTTGTAATGTGACAGGTGAA+GGG 0.678694 7.3:+9109783 MS.gene025615:intron
TGACGTAGCATGTGATGGTG+AGG 0.679050 7.3:-9110034 None:intergenic
AAACCTGCATGGTATGACAA+GGG 0.685749 7.3:-9108948 None:intergenic
CACGAGATAAACAACCGTTG+AGG 0.688403 7.3:-9108777 None:intergenic
GACACCGTGTACATCCTCAA+CGG 0.690188 7.3:+9108763 MS.gene025615:CDS
TATAATATGTCATCAACACA+AGG 0.697764 7.3:+9109959 MS.gene025615:CDS
ACAACCGTTGAGGATGTACA+CGG 0.701448 7.3:-9108767 None:intergenic
GATCTGCTAACATGAGCCGG+TGG 0.708271 7.3:-9108828 None:intergenic
GGAATAGCACTGTTCCTGTG+GGG 0.714296 7.3:+9108877 MS.gene025615:CDS
GTGGAGTAGAGTTACTACCA+TGG 0.729540 7.3:-9108809 None:intergenic
GTACTCGAACTATTTCCACA+AGG 0.735032 7.3:-9109830 None:intergenic
GAGTAGAGTTACTACCATGG+CGG 0.790463 7.3:-9108806 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAAACCATAAATAAATA+CGG - chr7.3:9109720-9109739 None:intergenic 15.0%
!! TATTAATATTATTATCAGGT+TGG - chr7.3:9109895-9109914 None:intergenic 15.0%
!!! ATATTCAATATTTTACTTAG+AGG + chr7.3:9109022-9109041 MS.gene025615:intron 15.0%
!! AAATTAAATTCAACAAAAGC+AGG - chr7.3:9109584-9109603 None:intergenic 20.0%
!! ATTCTATTACAAATTTCAGA+TGG + chr7.3:9109378-9109397 MS.gene025615:intron 20.0%
!! TGAATTGAAAATGAATGTAT+GGG + chr7.3:9109749-9109768 MS.gene025615:intron 20.0%
!! TTGAATTGAAAATGAATGTA+TGG + chr7.3:9109748-9109767 MS.gene025615:intron 20.0%
! ATGTACATAAGAGATTATAG+TGG - chr7.3:9108982-9109001 None:intergenic 25.0%
! ATTGTTTAGACGAAAAGTTT+AGG - chr7.3:9109186-9109205 None:intergenic 25.0%
! TAGTAATTTGAATTTCCCAT+GGG + chr7.3:9109337-9109356 MS.gene025615:intron 25.0%
! TATAATATGTCATCAACACA+AGG + chr7.3:9109959-9109978 MS.gene025615:CDS 25.0%
! TATTACAAATTTCAGATGGA+TGG + chr7.3:9109382-9109401 MS.gene025615:intron 25.0%
! TATTAGACGATTGTTTATCA+CGG - chr7.3:9109082-9109101 None:intergenic 25.0%
!! GCATTTTCCGTATTTATTTA+TGG + chr7.3:9109710-9109729 MS.gene025615:intron 25.0%
!! TTAACGTTTTCAACGTTAAA+AGG + chr7.3:9109622-9109641 MS.gene025615:intron 25.0%
AAAACATACATGCAACACAA+TGG - chr7.3:9109409-9109428 None:intergenic 30.0%
ACTGACAATATATATACCCA+TGG - chr7.3:9109356-9109375 None:intergenic 30.0%
CAAAGCTATGTTCTTACAAA+AGG + chr7.3:9108681-9108700 MS.gene025615:CDS 30.0%
CTAGTAATTTGAATTTCCCA+TGG + chr7.3:9109336-9109355 MS.gene025615:intron 30.0%
CTGACAATATATATACCCAT+GGG - chr7.3:9109355-9109374 None:intergenic 30.0%
GACATATTATAAGAGCAATC+TGG - chr7.3:9109950-9109969 None:intergenic 30.0%
TACAAGAAACAACATCACTA+TGG + chr7.3:9108346-9108365 MS.gene025615:CDS 30.0%
TACTGTTCCAATATGAATAC+CGG - chr7.3:9108659-9108678 None:intergenic 30.0%
TTAGACGAAAAGTTTAGGAA+GGG - chr7.3:9109181-9109200 None:intergenic 30.0%
TTTAGACGAAAAGTTTAGGA+AGG - chr7.3:9109182-9109201 None:intergenic 30.0%
!! ATGTTGTTTCTTGTATTGTG+TGG - chr7.3:9108341-9108360 None:intergenic 30.0%
!! CATAAGAGATTATAGTGGAT+AGG - chr7.3:9108977-9108996 None:intergenic 30.0%
!!! AGGTTTGTTACTAAGTTTTG+AGG + chr7.3:9108608-9108627 MS.gene025615:CDS 30.0%
AAAGATAAACGTCTTGATGC+TGG + chr7.3:9108720-9108739 MS.gene025615:CDS 35.0%
AAATAGTTCGAGTACTTCCA+GGG + chr7.3:9109838-9109857 MS.gene025615:CDS 35.0%
AAGAAACAACATCACTATGG+TGG + chr7.3:9108349-9108368 MS.gene025615:CDS 35.0%
AAGGGTAACTTCCAGTTATT+TGG + chr7.3:9109468-9109487 MS.gene025615:intron 35.0%
AGGGTAACTTCCAGTTATTT+GGG + chr7.3:9109469-9109488 MS.gene025615:intron 35.0%
ATAATGTGACCTAAAGTGTG+TGG + chr7.3:9109541-9109560 MS.gene025615:intron 35.0%
CTAGACTCAGAAGAAATCAA+AGG + chr7.3:9108588-9108607 MS.gene025615:CDS 35.0%
GCTATGTTCTTACAAAAGGT+TGG + chr7.3:9108685-9108704 MS.gene025615:CDS 35.0%
TGATTTCTTCTGAGTCTAGT+GGG - chr7.3:9108587-9108606 None:intergenic 35.0%
TTGATTTCTTCTGAGTCTAG+TGG - chr7.3:9108588-9108607 None:intergenic 35.0%
TTTCAACGTTAAAAGGTTGC+AGG + chr7.3:9109629-9109648 MS.gene025615:intron 35.0%
!! TATCTCTCAGCATGTTGTTT+TGG - chr7.3:9108561-9108580 None:intergenic 35.0%
!!! GTTGTTTTGGAATAACGAGT+CGG - chr7.3:9108548-9108567 None:intergenic 35.0%
AAAACCTGCATGGTATGACA+AGG - chr7.3:9108952-9108971 None:intergenic 40.0%
AAACCTGCATGGTATGACAA+GGG - chr7.3:9108951-9108970 None:intergenic 40.0%
AGCAATCTGGTGACAAAGTT+TGG - chr7.3:9109937-9109956 None:intergenic 40.0%
AGCTGAACTAGAAGATGATG+TGG + chr7.3:9108416-9108435 MS.gene025615:CDS 40.0%
CTAATTACTCGTGCACTATG+TGG - chr7.3:9109235-9109254 None:intergenic 40.0%
GAAATAGTTCGAGTACTTCC+AGG + chr7.3:9109837-9109856 MS.gene025615:CDS 40.0%
GCAATCTGGTGACAAAGTTT+GGG - chr7.3:9109936-9109955 None:intergenic 40.0%
GTACTCGAACTATTTCCACA+AGG - chr7.3:9109833-9109852 None:intergenic 40.0%
GTTCGTTTCTTTCGCTTGTT+GGG + chr7.3:9109664-9109683 MS.gene025615:intron 40.0%
GTTGTAATGTGACAGGTGAA+GGG + chr7.3:9109783-9109802 MS.gene025615:intron 40.0%
TGGATAGGTAAAAACCTGCA+TGG - chr7.3:9108962-9108981 None:intergenic 40.0%
TGTGGTTGTGTTCTGACTTT+GGG - chr7.3:9109810-9109829 None:intergenic 40.0%
TGTTCGTTTCTTTCGCTTGT+TGG + chr7.3:9109663-9109682 MS.gene025615:intron 40.0%
TGTTGTAATGTGACAGGTGA+AGG + chr7.3:9109782-9109801 MS.gene025615:intron 40.0%
! ACTTCCAGTTATTTGGGACT+TGG + chr7.3:9109475-9109494 MS.gene025615:intron 40.0%
! ATGTGATGGTGAGGATTTGA+AGG - chr7.3:9110028-9110047 None:intergenic 40.0%
! GGATGATGATGAGTAGGATA+AGG - chr7.3:9108930-9108949 None:intergenic 40.0%
!!! CTAAGTTTTGAGGATGAGTC+AGG + chr7.3:9108618-9108637 MS.gene025615:CDS 40.0%
AACGGTTGTTTATCTCGTGG+AGG + chr7.3:9108781-9108800 MS.gene025615:CDS 45.0%
ACAACCGTTGAGGATGTACA+CGG - chr7.3:9108770-9108789 None:intergenic 45.0%
AGCAGATCCATCTGTAGTGA+TGG + chr7.3:9108843-9108862 MS.gene025615:CDS 45.0%
AGGATGAGTCAGGTAAGTGT+TGG + chr7.3:9108628-9108647 MS.gene025615:CDS 45.0%
ATGGATCTGCTAACATGAGC+CGG - chr7.3:9108834-9108853 None:intergenic 45.0%
CACGAGATAAACAACCGTTG+AGG - chr7.3:9108780-9108799 None:intergenic 45.0%
CATTAACACCAAGCGACGTA+GGG + chr7.3:9108514-9108533 MS.gene025615:CDS 45.0%
CCATCTGTAGTGATGGCAAT+GGG + chr7.3:9108850-9108869 MS.gene025615:CDS 45.0%
CGAACTATTTCCACAAGGTG+TGG - chr7.3:9109828-9109847 None:intergenic 45.0%
CTCAACGGTTGTTTATCTCG+TGG + chr7.3:9108778-9108797 MS.gene025615:CDS 45.0%
GAGGATTTGAAGGAGGTTGA+CGG - chr7.3:9110018-9110037 None:intergenic 45.0%
GAGTAGAGTTACTACCATGG+CGG - chr7.3:9108809-9108828 None:intergenic 45.0%
GGAGGTTCCGGTATTCATAT+TGG + chr7.3:9108649-9108668 MS.gene025615:CDS 45.0%
GTAGTGATGGCAATGGGAAT+GGG + chr7.3:9108856-9108875 MS.gene025615:CDS 45.0%
GTGGAGTAGAGTTACTACCA+TGG - chr7.3:9108812-9108831 None:intergenic 45.0%
GTGTGGTTGTGTTCTGACTT+TGG - chr7.3:9109811-9109830 None:intergenic 45.0%
GTTGTTGACGTAGCATGTGA+TGG - chr7.3:9110042-9110061 None:intergenic 45.0%
TCCATCTGTAGTGATGGCAA+TGG + chr7.3:9108849-9108868 MS.gene025615:CDS 45.0%
TCCTCCAAGTCCCAAATAAC+TGG - chr7.3:9109482-9109501 None:intergenic 45.0%
TGCACGTGTTGTAATGTGAC+AGG + chr7.3:9109776-9109795 MS.gene025615:intron 45.0%
TGGTAGTAACTCTACTCCAC+CGG + chr7.3:9108812-9108831 MS.gene025615:CDS 45.0%
TGTAGTGATGGCAATGGGAA+TGG + chr7.3:9108855-9108874 MS.gene025615:CDS 45.0%
! ATTTGGGACTTGGAGGAATG+AGG + chr7.3:9109485-9109504 MS.gene025615:intron 45.0%
! GACAAGGGATGATGATGAGT+AGG - chr7.3:9108936-9108955 None:intergenic 45.0%
! TCCAGTTATTTGGGACTTGG+AGG + chr7.3:9109478-9109497 MS.gene025615:intron 45.0%
! TGATGGTGAGGATTTGAAGG+AGG - chr7.3:9110025-9110044 None:intergenic 45.0%
!! ATGAGTCAGGTAAGTGTTGG+AGG + chr7.3:9108631-9108650 MS.gene025615:CDS 45.0%
!! TTAATATTAATATTATTATC+AGG - chr7.3:9109899-9109918 None:intergenic 5.0%
!!! ATTTTATTCTTTTAAATAAA+GGG + chr7.3:9109450-9109469 MS.gene025615:intron 5.0%
!!! TATTTTATTCTTTTAAATAA+AGG + chr7.3:9109449-9109468 MS.gene025615:intron 5.0%
ATGCGCAGGATAGAGTTCTC+TGG - chr7.3:9108907-9108926 None:intergenic 50.0%
CAGAACACAACCACACCTTG+TGG + chr7.3:9109815-9109834 MS.gene025615:CDS 50.0%
CATCCCTTGTCATACCATGC+AGG + chr7.3:9108945-9108964 MS.gene025615:CDS 50.0%
CCATTAACACCAAGCGACGT+AGG + chr7.3:9108513-9108532 MS.gene025615:CDS 50.0%
CCCATTGCCATCACTACAGA+TGG - chr7.3:9108853-9108872 None:intergenic 50.0%
GACACCGTGTACATCCTCAA+CGG + chr7.3:9108763-9108782 MS.gene025615:CDS 50.0%
GATTTGAAGGAGGTTGACGG+TGG - chr7.3:9110015-9110034 None:intergenic 50.0%
GGAATAGCACTGTTCCTGTG+GGG + chr7.3:9108877-9108896 MS.gene025615:CDS 50.0%
GGGAATAGCACTGTTCCTGT+GGG + chr7.3:9108876-9108895 MS.gene025615:CDS 50.0%
TGAGTAGGATAAGGATGCGC+AGG - chr7.3:9108921-9108940 None:intergenic 50.0%
TGGGAATAGCACTGTTCCTG+TGG + chr7.3:9108875-9108894 MS.gene025615:CDS 50.0%
TTCAACTTCCCTACGTCGCT+TGG - chr7.3:9108525-9108544 None:intergenic 50.0%
! GAGGCTGTTTGGAGTGAACA+TGG + chr7.3:9109865-9109884 MS.gene025615:CDS 50.0%
! GGAGGTGGTGGTAGAATTGT+GGG - chr7.3:9109994-9110013 None:intergenic 50.0%
! TGACGTAGCATGTGATGGTG+AGG - chr7.3:9110037-9110056 None:intergenic 50.0%
! TGGAGGTGGTGGTAGAATTG+TGG - chr7.3:9109995-9110014 None:intergenic 50.0%
!! CAGGTAAGTGTTGGAGGTTC+CGG + chr7.3:9108637-9108656 MS.gene025615:CDS 50.0%
!! CCTACGTCGCTTGGTGTTAA+TGG - chr7.3:9108516-9108535 None:intergenic 50.0%
ATAGCACTGTTCCTGTGGGG+TGG + chr7.3:9108880-9108899 MS.gene025615:CDS 55.0%
GATCTGCTAACATGAGCCGG+TGG - chr7.3:9108831-9108850 None:intergenic 55.0%
GGCTTCACGCCACACACTTT+AGG - chr7.3:9109553-9109572 None:intergenic 55.0%
TTGAAGGAGGTTGACGGTGG+AGG - chr7.3:9110012-9110031 None:intergenic 55.0%
AAGGAGGTTGACGGTGGAGG+TGG - chr7.3:9110009-9110028 None:intergenic 60.0%
AGTTCTCTGGACCACCCCAC+AGG - chr7.3:9108894-9108913 None:intergenic 60.0%
CAACAAAAGCAGGCGCGCGT+AGG - chr7.3:9109574-9109593 None:intergenic 60.0%
TCCAAACAGCCTCAGCACCC+TGG - chr7.3:9109858-9109877 None:intergenic 60.0%
!! CGAGTACTTCCAGGGTGCTG+AGG + chr7.3:9109846-9109865 MS.gene025615:CDS 60.0%
!! TCCAGGGTGCTGAGGCTGTT+TGG + chr7.3:9109854-9109873 MS.gene025615:CDS 60.0%
GAGGTTGACGGTGGAGGTGG+TGG - chr7.3:9110006-9110025 None:intergenic 65.0%
!! ATCTCGTGGAGGCGCCGCCA+TGG + chr7.3:9108792-9108811 MS.gene025615:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 9108327 9110069 9108327 ID=MS.gene025615
chr7.3 mRNA 9108327 9110069 9108327 ID=MS.gene025615.t1;Parent=MS.gene025615
chr7.3 exon 9108327 9108966 9108327 ID=MS.gene025615.t1.exon1;Parent=MS.gene025615.t1
chr7.3 CDS 9108327 9108966 9108327 ID=cds.MS.gene025615.t1;Parent=MS.gene025615.t1
chr7.3 exon 9109798 9110069 9109798 ID=MS.gene025615.t1.exon2;Parent=MS.gene025615.t1
chr7.3 CDS 9109798 9110069 9109798 ID=cds.MS.gene025615.t1;Parent=MS.gene025615.t1
Gene Sequence

>MS.gene025615

ATGTCAATAAACCACACAATACAAGAAACAACATCACTATGGTGGAATCAACAACAACAACAACAAAGAACTCAACAAGATGCAGAAGAAGCTGAACTAGAAGATGATGTGGTTTTAGAATCAATAATGAAACTAAAAACAACAGAAGCATCATCAGAAGAAGAGAAAGAAGCTATGTTCGAGAAACCATTAACACCAAGCGACGTAGGGAAGTTGAACCGACTCGTTATTCCAAAACAACATGCTGAGAGATATTTCCCACTAGACTCAGAAGAAATCAAAGGTTTGTTACTAAGTTTTGAGGATGAGTCAGGTAAGTGTTGGAGGTTCCGGTATTCATATTGGAACAGTAGTCAAAGCTATGTTCTTACAAAAGGTTGGAGTCGTTATGTTAAAGATAAACGTCTTGATGCTGGTGATGTTGTTTTGTTTCAAAGACACCGTGTACATCCTCAACGGTTGTTTATCTCGTGGAGGCGCCGCCATGGTAGTAACTCTACTCCACCGGCTCATGTTAGCAGATCCATCTGTAGTGATGGCAATGGGAATGGGAATAGCACTGTTCCTGTGGGGTGGTCCAGAGAACTCTATCCTGCGCATCCTTATCCTACTCATCATCATCCCTTGTCATACCATGCAGGTTTTTACCTATCCACTATAATCTCTTATGTACATTTCTAATTCATCATTCTCTCATATTCAATATTTTACTTAGAGGAGTAATTTTATATTTTAATTTTTTTTAAGAACATCCGTGATAAACAATCGTCTAATACTTCGTTTACTCATGTTTATTTTTTAAAATATTTTATATTAACTTTAATTTAAAAAAAAATAAATAAAAATAAGTTCCCTTCCTAAACTTTTCGTCTAAACAATCTTTTATCATTTAAGTTATACTTACTCCACATAGTGCACGAGTAATTAGTCTTAAGATTTGAGTATCACGCTAAAAGACATTTTGCATTATTTAAAAAACAATTACTATGAGAGTAGTAAATAGACTTGACTAGTAATTTGAATTTCCCATGGGTATATATATTGTCAGTAAATTCTATTACAAATTTCAGATGGATGGTCCATTGTGTTGCATGTATGTTTTCTTTTATTTATTTAAACTTTTATTTTATTCTTTTAAATAAAGGGTAACTTCCAGTTATTTGGGACTTGGAGGAATGAGGACACACTAGCTAACATTTGTTTATAATTTCAGAATAATGTGACCTAAAGTGTGTGGCGTGAAGCCTACGCGCGCCTGCTTTTGTTGAATTTAATTTAACATAGTAAAAGTAAAATTAACGTTTTCAACGTTAAAAGGTTGCAGGACATGTTCATTTGTTCGTTTCTTTCGCTTGTTGGGTCTTGATCAATAGAAATTTAAATGCATTTTCCGTATTTATTTATGGTTTTGATTTGATTTTTTGAATTGAAAATGAATGTATGGGCATTTGCACGTGTTGTAATGTGACAGGTGAAGGGTCCCAAAGTCAGAACACAACCACACCTTGTGGAAATAGTTCGAGTACTTCCAGGGTGCTGAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATAATATTAATATTAACAATATTAATGATTCCCAAACTTTGTCACCAGATTGCTCTTATAATATGTCATCAACACAAGGCACAGCTATCCCACAATTCTACCACCACCTCCACCGTCAACCTCCTTCAAATCCTCACCATCACATGCTACGTCAACAACCATATTAG
Protein sequence

>MS.gene025615.t1

MSINHTIQETTSLWWNQQQQQQRTQQDAEEAELEDDVVLESIMKLKTTEASSEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEEIKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRVHPQRLFISWRRRHGSNSTPPAHVSRSICSDGNGNGNSTVPVGWSRELYPAHPYPTHHHPLSYHAGEGSQSQNTTTPCGNSSSTSRVLRLFGVNMECQPDNNININNINDSQTLSPDCSYNMSSTQGTAIPQFYHHLHRQPPSNPHHHMLRQQPY