Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025690.t1 | PNY03949.1 | 71.6 | 1357 | 253 | 14 | 1 | 1270 | 1 | 1312 | 0.00E+00 | 1879.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025690.t1 | Q9FNY2 | 67.9 | 237 | 67 | 3 | 34 | 267 | 66 | 296 | 5.5e-80 | 301.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025690.t1 | A0A2K3NLS3 | 71.6 | 1357 | 253 | 14 | 1 | 1270 | 1 | 1312 | 0.0e+00 | 1879.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene025690.t1 | TF | E2F-DP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025690.t1 | MTR_2g008500 | 64.815 | 378 | 129 | 1 | 894 | 1271 | 33 | 406 | 0.0 | 540 |
MS.gene025690.t1 | MTR_7g070710 | 64.286 | 378 | 131 | 1 | 894 | 1271 | 32 | 405 | 2.64e-179 | 535 |
MS.gene025690.t1 | MTR_3g085530 | 60.053 | 378 | 126 | 2 | 894 | 1271 | 33 | 385 | 6.06e-157 | 490 |
MS.gene025690.t1 | MTR_4g077803 | 70.468 | 342 | 69 | 6 | 1 | 315 | 1 | 337 | 5.02e-149 | 453 |
MS.gene025690.t1 | MTR_2g038740 | 62.876 | 299 | 110 | 1 | 892 | 1189 | 377 | 675 | 1.10e-134 | 428 |
MS.gene025690.t1 | MTR_2g038740 | 64.935 | 77 | 27 | 0 | 541 | 617 | 259 | 335 | 4.48e-23 | 106 |
MS.gene025690.t1 | MTR_4g077797 | 66.563 | 323 | 91 | 6 | 2 | 315 | 21 | 335 | 1.14e-132 | 410 |
MS.gene025690.t1 | MTR_4g120080 | 43.370 | 362 | 169 | 4 | 924 | 1274 | 6 | 342 | 6.61e-90 | 308 |
MS.gene025690.t1 | MTR_2g089470 | 44.034 | 352 | 161 | 4 | 924 | 1264 | 6 | 332 | 1.87e-89 | 307 |
MS.gene025690.t1 | MTR_2g068990 | 44.034 | 352 | 161 | 4 | 924 | 1264 | 6 | 332 | 1.87e-89 | 307 |
MS.gene025690.t1 | MTR_7g026957 | 47.018 | 285 | 151 | 0 | 980 | 1264 | 90 | 374 | 2.29e-88 | 293 |
MS.gene025690.t1 | MTR_8g447120 | 53.386 | 251 | 87 | 4 | 480 | 726 | 28 | 252 | 3.11e-80 | 264 |
MS.gene025690.t1 | MTR_7g112900 | 40.691 | 376 | 143 | 6 | 889 | 1264 | 33 | 328 | 1.19e-76 | 257 |
MS.gene025690.t1 | MTR_8g071880 | 39.506 | 324 | 166 | 3 | 941 | 1264 | 14 | 307 | 5.09e-72 | 251 |
MS.gene025690.t1 | MTR_0499s0050 | 37.135 | 377 | 175 | 6 | 889 | 1264 | 24 | 339 | 1.30e-71 | 243 |
MS.gene025690.t1 | MTR_5g041120 | 49.778 | 225 | 112 | 1 | 937 | 1160 | 1 | 225 | 1.11e-70 | 238 |
MS.gene025690.t1 | MTR_0048s0090 | 61.017 | 177 | 69 | 0 | 468 | 644 | 392 | 568 | 5.65e-67 | 237 |
MS.gene025690.t1 | MTR_7g027013 | 52.466 | 223 | 64 | 4 | 892 | 1110 | 28 | 212 | 5.96e-62 | 225 |
MS.gene025690.t1 | MTR_5g053570 | 47.525 | 202 | 106 | 0 | 1063 | 1264 | 1 | 202 | 6.94e-59 | 211 |
MS.gene025690.t1 | MTR_2g060870 | 41.497 | 294 | 143 | 6 | 521 | 791 | 173 | 460 | 3.11e-56 | 203 |
MS.gene025690.t1 | MTR_0014s0220 | 53.548 | 155 | 72 | 0 | 1110 | 1264 | 2 | 156 | 1.94e-48 | 187 |
MS.gene025690.t1 | MTR_4g037510 | 44.654 | 159 | 88 | 0 | 1055 | 1213 | 46 | 204 | 8.71e-46 | 164 |
MS.gene025690.t1 | MTR_2g049700 | 45.098 | 153 | 79 | 1 | 894 | 1046 | 157 | 304 | 7.85e-40 | 150 |
MS.gene025690.t1 | MTR_6g045587 | 49.123 | 114 | 58 | 0 | 1107 | 1220 | 7 | 120 | 6.10e-38 | 138 |
MS.gene025690.t1 | MTR_5g049850 | 49.123 | 114 | 58 | 0 | 1107 | 1220 | 7 | 120 | 6.99e-38 | 138 |
MS.gene025690.t1 | MTR_5g049660 | 49.123 | 114 | 58 | 0 | 1107 | 1220 | 7 | 120 | 2.20e-37 | 137 |
MS.gene025690.t1 | MTR_4g034880 | 29.932 | 294 | 165 | 6 | 980 | 1261 | 1 | 265 | 1.01e-34 | 138 |
MS.gene025690.t1 | MTR_1g021210 | 40.361 | 166 | 88 | 2 | 1110 | 1264 | 2 | 167 | 2.74e-34 | 140 |
MS.gene025690.t1 | MTR_8g039210 | 33.641 | 217 | 116 | 3 | 470 | 685 | 277 | 466 | 2.16e-31 | 132 |
MS.gene025690.t1 | MTR_8g039210 | 35.075 | 134 | 62 | 3 | 998 | 1126 | 466 | 579 | 3.66e-16 | 84.3 |
MS.gene025690.t1 | MTR_7g034265 | 39.597 | 149 | 79 | 2 | 1073 | 1210 | 2 | 150 | 2.97e-29 | 114 |
MS.gene025690.t1 | MTR_0003s0430 | 30.116 | 259 | 137 | 8 | 479 | 735 | 203 | 419 | 1.96e-27 | 117 |
MS.gene025690.t1 | MTR_0077s0060 | 31.193 | 218 | 137 | 5 | 505 | 720 | 10 | 216 | 1.17e-26 | 112 |
MS.gene025690.t1 | MTR_7g022020 | 35.152 | 165 | 82 | 2 | 1110 | 1274 | 2 | 141 | 8.97e-23 | 105 |
MS.gene025690.t1 | MTR_2g036820 | 36.364 | 143 | 66 | 1 | 470 | 612 | 107 | 224 | 3.67e-22 | 97.4 |
MS.gene025690.t1 | MTR_8g086130 | 41.905 | 105 | 61 | 0 | 1169 | 1273 | 1 | 105 | 3.80e-22 | 93.6 |
MS.gene025690.t1 | MTR_8g470070 | 62.500 | 64 | 24 | 0 | 1054 | 1117 | 44 | 107 | 1.38e-20 | 88.6 |
MS.gene025690.t1 | MTR_7g013890 | 47.222 | 72 | 38 | 0 | 1107 | 1178 | 7 | 78 | 1.87e-20 | 87.8 |
MS.gene025690.t1 | MTR_1g044190 | 40.741 | 108 | 64 | 0 | 1135 | 1242 | 89 | 196 | 6.08e-20 | 94.7 |
MS.gene025690.t1 | MTR_3g107750 | 30.769 | 156 | 68 | 2 | 408 | 563 | 25 | 140 | 1.37e-19 | 89.0 |
MS.gene025690.t1 | MTR_3g041760 | 45.679 | 81 | 44 | 0 | 1172 | 1252 | 2 | 82 | 4.85e-18 | 80.5 |
MS.gene025690.t1 | MTR_4g104400 | 32.278 | 158 | 100 | 4 | 366 | 522 | 16 | 167 | 1.45e-15 | 76.3 |
MS.gene025690.t1 | MTR_8g066430 | 31.068 | 103 | 71 | 0 | 589 | 691 | 6 | 108 | 1.33e-13 | 68.9 |
MS.gene025690.t1 | MTR_5g077490 | 43.243 | 74 | 41 | 1 | 555 | 627 | 1 | 74 | 3.58e-13 | 68.9 |
MS.gene025690.t1 | MTR_1g106780 | 50.000 | 56 | 28 | 0 | 555 | 610 | 1 | 56 | 8.59e-13 | 67.0 |
MS.gene025690.t1 | MTR_0003s0280 | 53.333 | 45 | 21 | 0 | 472 | 516 | 98 | 142 | 3.99e-12 | 65.9 |
MS.gene025690.t1 | MTR_3g056470 | 48.214 | 56 | 29 | 0 | 555 | 610 | 1 | 56 | 2.86e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025690.t1 | AT5G03415 | 64.364 | 275 | 83 | 5 | 2 | 267 | 28 | 296 | 4.32e-102 | 330 |
MS.gene025690.t1 | AT5G03415 | 62.545 | 275 | 82 | 6 | 2 | 267 | 28 | 290 | 3.10e-97 | 316 |
MS.gene025690.t1 | AT5G02470 | 41.475 | 217 | 116 | 5 | 51 | 262 | 32 | 242 | 1.70e-49 | 178 |
MS.gene025690.t1 | AT5G02470 | 41.475 | 217 | 116 | 5 | 51 | 262 | 32 | 242 | 1.70e-49 | 178 |
MS.gene025690.t1 | AT5G02470 | 41.475 | 217 | 116 | 5 | 51 | 262 | 32 | 242 | 1.70e-49 | 178 |
Find 243 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGCATCACCTCCGCTTTC+TGG | 0.140961 | 7.1:-5055067 | MS.gene025690:CDS |
AATTTCCTCTGAAGTTTATT+TGG | 0.156927 | 7.1:-5048752 | MS.gene025690:CDS |
AAACCTCTTTGGAAAATATT+TGG | 0.162976 | 7.1:+5049313 | None:intergenic |
TCAATTTCCACATGACATTT+TGG | 0.179498 | 7.1:+5054218 | None:intergenic |
TTATTTACAACCTCATTAAT+TGG | 0.197966 | 7.1:+5048858 | None:intergenic |
TTAGAGAGTGGTTTGCTTAT+AGG | 0.198307 | 7.1:-5050170 | MS.gene025690:CDS |
AAAACCTTTCATGCTAATTT+GGG | 0.213087 | 7.1:+5057311 | None:intergenic |
TATGTTTGCTTTCACATCTA+TGG | 0.218347 | 7.1:-5050895 | MS.gene025690:CDS |
ACATAGCTACCAGGTGAAAT+AGG | 0.227025 | 7.1:+5052337 | None:intergenic |
AACTTGGTATTATGAATAAA+TGG | 0.239361 | 7.1:+5048834 | None:intergenic |
ACTTTGATTAATTATGTTAA+AGG | 0.260332 | 7.1:-5048630 | MS.gene025690:CDS |
GTCAGGCTTGCATCAGTTGC+AGG | 0.260541 | 7.1:-5055125 | MS.gene025690:CDS |
CTCGAATCATCCGGTATGTT+TGG | 0.265614 | 7.1:+5050514 | None:intergenic |
TATTATTTCCAAGGATAAAA+AGG | 0.267147 | 7.1:-5056632 | MS.gene025690:CDS |
GCAAACTTGGGCTGAATTCC+TGG | 0.282737 | 7.1:+5050774 | None:intergenic |
CTTGTTCCTCAAACTCCTTT+AGG | 0.292754 | 7.1:+5056390 | None:intergenic |
GTGTCTTCACTTATGATTCA+TGG | 0.299024 | 7.1:-5049389 | MS.gene025690:CDS |
TCAGGATCACTATCTTTATC+TGG | 0.299313 | 7.1:+5049425 | None:intergenic |
TATCTAGACCTGAATTTGTT+TGG | 0.305283 | 7.1:-5048419 | MS.gene025690:CDS |
GGAAGTTTGCTTCCACTTCC+AGG | 0.308988 | 7.1:-5050792 | MS.gene025690:CDS |
TATTATTGCATCAAGTTTGT+AGG | 0.312560 | 7.1:-5056217 | MS.gene025690:intron |
AGACCATCAATTTCCACATT+TGG | 0.319213 | 7.1:+5051336 | None:intergenic |
ATTCTCTTGCCAACCGTTGA+TGG | 0.322678 | 7.1:+5049961 | None:intergenic |
CAGTTTCAAGCGTGTCAATT+AGG | 0.323437 | 7.1:-5055093 | MS.gene025690:CDS |
AGAATTCATAGATGCCATTA+TGG | 0.327948 | 7.1:-5048511 | MS.gene025690:CDS |
CTAAACAAAGCAACCGTAAC+CGG | 0.330991 | 7.1:-5052280 | MS.gene025690:CDS |
GTCTTGTTCCAAACAAATTC+AGG | 0.333764 | 7.1:+5048411 | None:intergenic |
CATAGCTACCAGGTGAAATA+GGG | 0.349787 | 7.1:+5052338 | None:intergenic |
CCGGTTGTTCATCTGGTAAA+TGG | 0.356608 | 7.1:+5048901 | None:intergenic |
TATTAGAAAGGGCGAGTCTT+TGG | 0.359021 | 7.1:-5049225 | MS.gene025690:CDS |
GTTGGAGAAGGTAGAAAGTA+AGG | 0.363432 | 7.1:-5057195 | MS.gene025690:CDS |
CTTACAGAGGCAATTCTTAG+AGG | 0.367258 | 7.1:-5049994 | MS.gene025690:CDS |
ATCCGGTATGTTTGGGCGTA+TGG | 0.368937 | 7.1:+5050522 | None:intergenic |
ATAGTATGATTGAGTCTTCC+CGG | 0.370509 | 7.1:-5050071 | MS.gene025690:CDS |
AAATCTCCATGCATGCAAAA+TGG | 0.372471 | 7.1:-5049344 | MS.gene025690:CDS |
TTGAGTCTTCCCGGTTGAAA+TGG | 0.377364 | 7.1:-5050062 | MS.gene025690:CDS |
TCCGCTTTCTGGAATACTTA+AGG | 0.378685 | 7.1:-5055056 | MS.gene025690:intron |
CGGTTACGGTTGCTTTGTTT+AGG | 0.378746 | 7.1:+5052281 | None:intergenic |
GTCGGCTCGCTCCGGCTAGA+TGG | 0.379241 | 7.1:+5057945 | None:intergenic |
GTGTTGTCAACAAACCTCTT+TGG | 0.382233 | 7.1:+5049302 | None:intergenic |
AAAACAACCGGTTGTTCATC+TGG | 0.382679 | 7.1:+5048894 | None:intergenic |
GACACTATATTAAATAGTTC+AGG | 0.384519 | 7.1:+5049407 | None:intergenic |
AATATATAATTGAGCAAACT+TGG | 0.384643 | 7.1:+5050761 | None:intergenic |
CATTTGAATCATCATTCAAC+TGG | 0.391040 | 7.1:+5050223 | None:intergenic |
TTGGTGAGATGTATTATCTT+AGG | 0.392647 | 7.1:-5048653 | MS.gene025690:CDS |
AGTAAAAGTGATGAATAAAT+CGG | 0.401378 | 7.1:+5049849 | None:intergenic |
GTATACAGAAGGCGAGATAA+TGG | 0.401582 | 7.1:-5049254 | MS.gene025690:CDS |
GGAGCACAGGAAGTAGTTTA+CGG | 0.405640 | 7.1:-5048476 | MS.gene025690:CDS |
TCGAATCATCCGGTATGTTT+GGG | 0.406105 | 7.1:+5050515 | None:intergenic |
GGGGAAGGTTCTAGCTTGTC+AGG | 0.408012 | 7.1:-5055142 | MS.gene025690:CDS |
TGACGTTCCTGACAATGAAT+TGG | 0.410222 | 7.1:-5052203 | MS.gene025690:CDS |
ATGTTTGCTTTCACATCTAT+GGG | 0.412255 | 7.1:-5050894 | MS.gene025690:CDS |
GAGTTCTAACCCATTTCAAC+CGG | 0.412542 | 7.1:+5050052 | None:intergenic |
AATATTCTCAACTTCAGTAT+TGG | 0.415368 | 7.1:+5050468 | None:intergenic |
AACGTTTCAGCTGCTGCAAC+GGG | 0.415747 | 7.1:-5051270 | MS.gene025690:CDS |
GCTGCAACTTCAGATGTTGT+TGG | 0.416899 | 7.1:+5050408 | None:intergenic |
CCAATGGCTTGTCTCCATAA+TGG | 0.417403 | 7.1:+5048497 | None:intergenic |
GGGGACAAAACACTATTCAT+TGG | 0.417434 | 7.1:+5056838 | None:intergenic |
AACTTACCCAATTCATTGTC+AGG | 0.420608 | 7.1:+5052196 | None:intergenic |
TCACCGCAATGCAAATTTCC+AGG | 0.421335 | 7.1:+5052304 | None:intergenic |
TCATTCAATGGTTGCGGAAG+AGG | 0.421730 | 7.1:+5050981 | None:intergenic |
TGTTTGTTAGGAAAGCTAAC+TGG | 0.430033 | 7.1:-5054368 | MS.gene025690:intron |
GCTGCTGCAACGGGTGCAAC+TGG | 0.430950 | 7.1:-5051261 | MS.gene025690:intron |
TCTCCATTCATGACAAAAGT+TGG | 0.431998 | 7.1:+5050831 | None:intergenic |
TGTTTAAATTTGTCAACAAA+GGG | 0.436831 | 7.1:-5049100 | MS.gene025690:CDS |
ATTCTCATTTGACCCGGTTA+CGG | 0.436888 | 7.1:+5052267 | None:intergenic |
ATTGTTCAGTAATCCTCTGT+TGG | 0.438624 | 7.1:+5050145 | None:intergenic |
AAAGATAAATCTCCGCTTGA+AGG | 0.440338 | 7.1:+5056145 | None:intergenic |
CTCTTTCCTCGAGGAGAAGA+TGG | 0.441045 | 7.1:-5050261 | MS.gene025690:CDS |
GAAGTTGCAGCTTTAATTGT+TGG | 0.444267 | 7.1:-5050396 | MS.gene025690:CDS |
GAGAACATTCAGAACATCAT+AGG | 0.447978 | 7.1:+5056666 | None:intergenic |
TAATGGCGTGTTTATTAGAA+AGG | 0.451041 | 7.1:-5049237 | MS.gene025690:CDS |
GTGAATAAATCAATAAATGA+TGG | 0.451955 | 7.1:-5050864 | MS.gene025690:CDS |
TGAGTCTTCCCGGTTGAAAT+GGG | 0.453861 | 7.1:-5050061 | MS.gene025690:CDS |
AATTGTGTGTCATTCACCTT+AGG | 0.455505 | 7.1:+5051312 | None:intergenic |
TATGAATCGTTAAATTACCT+TGG | 0.456867 | 7.1:+5048334 | None:intergenic |
AACAACAGATGTCTATTGTA+TGG | 0.457306 | 7.1:+5049182 | None:intergenic |
AATGAGCAATTATATAGATC+AGG | 0.460541 | 7.1:-5056172 | MS.gene025690:CDS |
CTTATTTCAGCAAAAGATTG+AGG | 0.460853 | 7.1:+5048606 | None:intergenic |
CTCGAGGAGAAGATGGATAT+AGG | 0.462369 | 7.1:-5050254 | MS.gene025690:CDS |
CCATTTACCAGATGAACAAC+CGG | 0.462935 | 7.1:-5048901 | MS.gene025690:CDS |
TAATACATCTCACCAATTCC+AGG | 0.465320 | 7.1:+5048660 | None:intergenic |
ATTCTCATATTAATGTTGAA+TGG | 0.468807 | 7.1:-5049151 | MS.gene025690:CDS |
AAGCGTGTCAATTAGGCCTC+AGG | 0.469004 | 7.1:-5055086 | MS.gene025690:CDS |
ATCCTACCTAAAGGAGTTTG+AGG | 0.469730 | 7.1:-5056396 | MS.gene025690:CDS |
CTTTCTTGTCACATTTCTGT+TGG | 0.471125 | 7.1:+5052366 | None:intergenic |
ACCTCACAACACTGGGACAT+TGG | 0.472363 | 7.1:-5051140 | MS.gene025690:CDS |
CACATATTGTCATAGCATCT+TGG | 0.473626 | 7.1:+5049887 | None:intergenic |
TTTGGTTGATAACAAATTTG+TGG | 0.480513 | 7.1:-5049207 | MS.gene025690:CDS |
TATCTAGAGTGTGACGAGAA+TGG | 0.480614 | 7.1:-5052235 | MS.gene025690:CDS |
TAGTGCTATTGAGAAGCTAA+AGG | 0.482438 | 7.1:-5056584 | MS.gene025690:intron |
AATTTGTTTGGAACAAGACT+TGG | 0.487530 | 7.1:-5048407 | MS.gene025690:CDS |
TTGGGCTGAATTCCTGGAAG+TGG | 0.492393 | 7.1:+5050780 | None:intergenic |
TTGTGAAATAAATCATTCAA+TGG | 0.492523 | 7.1:+5050969 | None:intergenic |
GTAACAGAATGTCAGTTGTA+AGG | 0.496487 | 7.1:-5050716 | MS.gene025690:intron |
AAACGTTTCAGCTGCTGCAA+CGG | 0.496994 | 7.1:-5051271 | MS.gene025690:CDS |
GCAGCGGCTGTCTGCGTCGT+CGG | 0.497935 | 7.1:+5057927 | None:intergenic |
TGTACCTGAACCAGAACAAA+AGG | 0.501925 | 7.1:+5056121 | None:intergenic |
ATAATTGTGGAGACTCAATC+AGG | 0.504695 | 7.1:-5050342 | MS.gene025690:CDS |
TACCAAGTTTCTAGCATGGA+TGG | 0.506144 | 7.1:-5048820 | MS.gene025690:CDS |
GGCAATGGATATTATTTCCA+AGG | 0.507516 | 7.1:-5056641 | MS.gene025690:CDS |
ATCCATCCATGCTAGAAACT+TGG | 0.507588 | 7.1:+5048818 | None:intergenic |
AATAAATCATTCAATGGTTG+CGG | 0.511220 | 7.1:+5050975 | None:intergenic |
ATTCAACAGATCGAATGTCT+AGG | 0.511456 | 7.1:-5056446 | MS.gene025690:intron |
TGCAACTGTTGAACTTGAAG+TGG | 0.513525 | 7.1:-5055574 | MS.gene025690:CDS |
CCTACCATCACATCCTCTCT+TGG | 0.514421 | 7.1:+5050443 | None:intergenic |
CAAGGAGGCTTGTTATGCGA+TGG | 0.515803 | 7.1:-5048553 | MS.gene025690:CDS |
TTGTTTAAATTTGTCAACAA+AGG | 0.516287 | 7.1:-5049101 | MS.gene025690:CDS |
GTAAAAGTGATGAATAAATC+GGG | 0.517036 | 7.1:+5049850 | None:intergenic |
AGCTATGTTCTAAAGCGTCC+TGG | 0.518991 | 7.1:-5052322 | MS.gene025690:CDS |
TATTGTAATGGCAAATATGA+AGG | 0.519161 | 7.1:+5050291 | None:intergenic |
TGCGATGGGTTTGTTAGAAG+AGG | 0.520450 | 7.1:-5048538 | MS.gene025690:CDS |
TTCAACAGATCGAATGTCTA+GGG | 0.521141 | 7.1:-5056445 | MS.gene025690:intron |
TGCGGAAGAGGGAGGTAATG+AGG | 0.521309 | 7.1:+5050993 | None:intergenic |
GAGACAAGCCATTGGAGCAC+AGG | 0.521560 | 7.1:-5048489 | MS.gene025690:CDS |
CATCATCATGTATGTCAAGA+TGG | 0.522280 | 7.1:+5057892 | None:intergenic |
AAGGAGGCTTGTTATGCGAT+GGG | 0.522717 | 7.1:-5048552 | MS.gene025690:CDS |
CAAGATGCTATGACAATATG+TGG | 0.523376 | 7.1:-5049886 | MS.gene025690:CDS |
GACGTTCCTGACAATGAATT+GGG | 0.527489 | 7.1:-5052202 | MS.gene025690:intron |
TTACAGAGGCAATTCTTAGA+GGG | 0.527743 | 7.1:-5049993 | MS.gene025690:CDS |
AACTACTTCCTGTGCTCCAA+TGG | 0.527984 | 7.1:+5048481 | None:intergenic |
GATCCAAATGTGGAAATTGA+TGG | 0.529723 | 7.1:-5051339 | MS.gene025690:CDS |
TATCGACGCAGATGGATATC+CGG | 0.531149 | 7.1:-5049276 | MS.gene025690:CDS |
GAATGACACACAGTTTCCCT+TGG | 0.532011 | 7.1:-5054180 | MS.gene025690:CDS |
ACTTACCATTGCTGTAATGA+TGG | 0.533611 | 7.1:+5054333 | None:intergenic |
TAACAAGCCTCCTTGAATGT+TGG | 0.534898 | 7.1:+5048561 | None:intergenic |
ACACTCAATGTTACGGAAGG+AGG | 0.535766 | 7.1:-5055163 | MS.gene025690:CDS |
TATTGCTACACTCAATGTTA+CGG | 0.535816 | 7.1:-5055170 | MS.gene025690:CDS |
ATGACAATATGTGGATGGGC+TGG | 0.536350 | 7.1:-5049877 | MS.gene025690:CDS |
CATTCAATGGTTGCGGAAGA+GGG | 0.536491 | 7.1:+5050982 | None:intergenic |
ATCCATACGCCCAAACATAC+CGG | 0.537909 | 7.1:-5050524 | MS.gene025690:CDS |
TTATCTCGCCTTCTGTATAC+CGG | 0.538648 | 7.1:+5049257 | None:intergenic |
TGTCATCTTGCGAAGCAGCT+TGG | 0.541050 | 7.1:-5048980 | MS.gene025690:CDS |
AAGCAAAGTATCCTACCTAA+AGG | 0.541642 | 7.1:-5056405 | MS.gene025690:CDS |
TCTGCGTCGTCGGCTCGCTC+CGG | 0.543576 | 7.1:+5057937 | None:intergenic |
TTTGCTATGTGTTGCTCCCA+TGG | 0.545427 | 7.1:-5051029 | MS.gene025690:CDS |
CCATTCATGACAAAAGTTGG+AGG | 0.547632 | 7.1:+5050834 | None:intergenic |
AATGGCGTGTTTATTAGAAA+GGG | 0.549250 | 7.1:-5049236 | MS.gene025690:CDS |
AAGTTGTTACCTCACAACAC+TGG | 0.552977 | 7.1:-5051148 | MS.gene025690:CDS |
AGTACTTTAAAGATCGAGAC+TGG | 0.553039 | 7.1:+5049123 | None:intergenic |
AGAGTGCTTCTTCAATTCCA+AGG | 0.553651 | 7.1:-5048351 | MS.gene025690:CDS |
ATAATACCAAGTTTCTAGCA+TGG | 0.555729 | 7.1:-5048824 | MS.gene025690:CDS |
TTTGCTTTCACATCTATGGG+TGG | 0.555896 | 7.1:-5050891 | MS.gene025690:CDS |
CACTCAATGTTACGGAAGGA+GGG | 0.556476 | 7.1:-5055162 | MS.gene025690:CDS |
AGTTGTTACCTCACAACACT+GGG | 0.558282 | 7.1:-5051147 | MS.gene025690:CDS |
TTGGAGAAGGTAGAAAGTAA+GGG | 0.559901 | 7.1:-5057194 | MS.gene025690:CDS |
TTGCTTTCACATCTATGGGT+GGG | 0.561529 | 7.1:-5050890 | MS.gene025690:CDS |
CGCTTTAGAACATAGCTACC+AGG | 0.561886 | 7.1:+5052328 | None:intergenic |
TTGCTATGTGTTGCTCCCAT+GGG | 0.562663 | 7.1:-5051028 | MS.gene025690:CDS |
ATTGCTCATTTCGTTGAACA+AGG | 0.562679 | 7.1:+5056185 | None:intergenic |
GAGGAATCGCAATCCTCCCA+TGG | 0.563111 | 7.1:+5051012 | None:intergenic |
ACCTTAAGTATTCCAGAAAG+CGG | 0.563806 | 7.1:+5055055 | None:intergenic |
AAGAGCACGGGATATTGTAA+TGG | 0.564207 | 7.1:+5050279 | None:intergenic |
AAACCTTTCATGCTAATTTG+GGG | 0.565405 | 7.1:+5057312 | None:intergenic |
CTATGTGTTGCTCCCATGGG+AGG | 0.568367 | 7.1:-5051025 | MS.gene025690:CDS |
GGATGCAAATAAGAAGTATG+AGG | 0.569151 | 7.1:-5048799 | MS.gene025690:CDS |
AATCATGTGTAGATGAAAGC+AGG | 0.569304 | 7.1:-5057980 | MS.gene025690:CDS |
GAACATCATAGGCCCTTCGA+CGG | 0.570623 | 7.1:+5056677 | None:intergenic |
AAACAATTACTCTTAGAGAG+TGG | 0.571135 | 7.1:-5050182 | MS.gene025690:CDS |
TGTTCATTATCCAACATTCA+AGG | 0.572319 | 7.1:-5048571 | MS.gene025690:CDS |
TGATGTTCTGAATGTTCTCA+TGG | 0.572407 | 7.1:-5056662 | MS.gene025690:CDS |
ATATATAATTGAGCAAACTT+GGG | 0.573884 | 7.1:+5050762 | None:intergenic |
TTTAGCTTCTCAATAGCACT+AGG | 0.575236 | 7.1:+5056586 | None:intergenic |
AGAGAGGATGTGATGGTAGG+AGG | 0.575737 | 7.1:-5050440 | MS.gene025690:CDS |
TAAACAAAGCAACCGTAACC+GGG | 0.576188 | 7.1:-5052279 | MS.gene025690:CDS |
ATGCTATGACAATATGTGGA+TGG | 0.576683 | 7.1:-5049882 | MS.gene025690:CDS |
CCATTATGGAGACAAGCCAT+TGG | 0.576911 | 7.1:-5048497 | MS.gene025690:CDS |
AAGGTTAGCCTCTCCACTGA+AGG | 0.578318 | 7.1:+5048924 | None:intergenic |
ATTTGTTTGGAACAAGACTT+GGG | 0.578360 | 7.1:-5048406 | MS.gene025690:CDS |
TTTGAGAGTTGAGATGTACA+AGG | 0.580978 | 7.1:-5050019 | MS.gene025690:CDS |
GACATACATGATGATGATGC+AGG | 0.583166 | 7.1:-5057885 | MS.gene025690:CDS |
TTCTCCTCGAGGAAAGAGCA+CGG | 0.583910 | 7.1:+5050266 | None:intergenic |
TTGTTCATCTGGTAAATGGA+AGG | 0.584830 | 7.1:+5048905 | None:intergenic |
TGATGTTGATCCAATTAATG+AGG | 0.584846 | 7.1:-5048868 | MS.gene025690:CDS |
CTGAGCGACAATGGTACCCC+CGG | 0.585511 | 7.1:-5048722 | MS.gene025690:CDS |
AACCTTTCATGCTAATTTGG+GGG | 0.587021 | 7.1:+5057313 | None:intergenic |
TTCCTCAAACTCCTTTAGGT+AGG | 0.587051 | 7.1:+5056394 | None:intergenic |
TTCAGATCCAAAATGTCATG+TGG | 0.587452 | 7.1:-5054225 | MS.gene025690:intron |
CTACTATGTGCTCAAAGCAA+TGG | 0.590968 | 7.1:-5055218 | MS.gene025690:CDS |
CCAAGAGAGGATGTGATGGT+AGG | 0.591847 | 7.1:-5050443 | MS.gene025690:CDS |
GATGATGATGCAGGATCACA+AGG | 0.593414 | 7.1:-5057876 | MS.gene025690:CDS |
AACACAATTATCGACGCAGA+TGG | 0.594390 | 7.1:-5049284 | MS.gene025690:CDS |
TGCTATGACAATATGTGGAT+GGG | 0.594754 | 7.1:-5049881 | MS.gene025690:CDS |
GTTGGTAAATTGTGATAAGT+CGG | 0.595561 | 7.1:+5052384 | None:intergenic |
AAGCTTACCCCTATTTCACC+TGG | 0.596386 | 7.1:-5052346 | MS.gene025690:CDS |
GCTCCTCCGACAAAAGATGA+TGG | 0.597352 | 7.1:+5049931 | None:intergenic |
AACGTATTCAGAATTCTCCA+AGG | 0.597884 | 7.1:+5054163 | None:intergenic |
TACAACCATCATTACAGCAA+TGG | 0.598226 | 7.1:-5054338 | MS.gene025690:intron |
TCTCCTCGAGGAAAGAGCAC+GGG | 0.598984 | 7.1:+5050267 | None:intergenic |
GTAGATGAAAGCAGGAGTGC+TGG | 0.600296 | 7.1:-5057972 | MS.gene025690:CDS |
GTTGTATGCAGTGTTGGAGA+AGG | 0.602504 | 7.1:-5057207 | MS.gene025690:intron |
CATAAGTGGCCAGAATTGTG+TGG | 0.603097 | 7.1:-5049820 | MS.gene025690:CDS |
AATGTTACGGAAGGAGGGGA+AGG | 0.604293 | 7.1:-5055157 | MS.gene025690:CDS |
GGAGAGAACTATCATCAGAT+CGG | 0.604329 | 7.1:-5050813 | MS.gene025690:CDS |
TCTGAATGTTCTCATGGCAA+TGG | 0.604838 | 7.1:-5056656 | MS.gene025690:CDS |
TCTGTTTGCAGATCCAAATG+TGG | 0.606015 | 7.1:-5051349 | MS.gene025690:intron |
GAGATTACTCCATCAACGGT+TGG | 0.607217 | 7.1:-5049970 | MS.gene025690:CDS |
GCTTTGATTCTCATTTGACC+CGG | 0.611038 | 7.1:+5052261 | None:intergenic |
ATGGATATCCGGTATACAGA+AGG | 0.613014 | 7.1:-5049265 | MS.gene025690:CDS |
ATGGTTTAATTTGAGAGCAG+CGG | 0.613032 | 7.1:+5057911 | None:intergenic |
AGCTTCTCAATAGCACTAGG+AGG | 0.614094 | 7.1:+5056589 | None:intergenic |
CTAGGTGGCAGATGAACTTG+TGG | 0.615812 | 7.1:-5056875 | MS.gene025690:intron |
ACTCAATGTTACGGAAGGAG+GGG | 0.616617 | 7.1:-5055161 | MS.gene025690:CDS |
TAACTACAGAAAACCTTCAG+TGG | 0.616974 | 7.1:-5048937 | MS.gene025690:CDS |
TACAGAGGCAATTCTTAGAG+GGG | 0.618408 | 7.1:-5049992 | MS.gene025690:CDS |
GGGAAGAACAACTTTCAATG+AGG | 0.618421 | 7.1:-5057174 | MS.gene025690:intron |
AGGGGAGATTACTCCATCAA+CGG | 0.619355 | 7.1:-5049974 | MS.gene025690:CDS |
CTTTGAGAGAGATATAATTG+TGG | 0.619907 | 7.1:-5050355 | MS.gene025690:CDS |
ACGTATTCAGAATTCTCCAA+GGG | 0.620753 | 7.1:+5054164 | None:intergenic |
CAGTGCTCACAAATGCATGT+TGG | 0.630552 | 7.1:+5051113 | None:intergenic |
TCCAATGTCCCAGTGTTGTG+AGG | 0.631561 | 7.1:+5051139 | None:intergenic |
GGAAATTGATGGTCTTCCTA+AGG | 0.631711 | 7.1:-5051328 | MS.gene025690:CDS |
ATAGCTACCAGGTGAAATAG+GGG | 0.632130 | 7.1:+5052339 | None:intergenic |
GGAAGATGGGAACGCGACTG+CGG | 0.633565 | 7.1:-5058004 | None:intergenic |
ATTGACACGCTTGAAACTGA+AGG | 0.637612 | 7.1:+5055097 | None:intergenic |
AGATCAGGAAATCCTTCAAG+CGG | 0.637885 | 7.1:-5056157 | MS.gene025690:CDS |
AGGAATCGCAATCCTCCCAT+GGG | 0.638298 | 7.1:+5051013 | None:intergenic |
GCTACACTCAATGTTACGGA+AGG | 0.641637 | 7.1:-5055166 | MS.gene025690:CDS |
GGAAATTGATAGTCTTGCTA+AGG | 0.641726 | 7.1:-5054204 | MS.gene025690:CDS |
GGAATGATTCTGAGCGACAA+TGG | 0.641913 | 7.1:-5048731 | MS.gene025690:CDS |
AGTTCTAACCCATTTCAACC+GGG | 0.647042 | 7.1:+5050053 | None:intergenic |
TTGAGAATATTAGCCAAGAG+AGG | 0.647703 | 7.1:-5050456 | MS.gene025690:CDS |
TCATTCCAAATAAACTTCAG+AGG | 0.649951 | 7.1:+5048747 | None:intergenic |
TTGAGAGTTGAGATGTACAA+GGG | 0.650027 | 7.1:-5050018 | MS.gene025690:CDS |
TTAGCCAAGAGAGGATGTGA+TGG | 0.654679 | 7.1:-5050447 | MS.gene025690:CDS |
AGCACTGCGGTGCAATGATG+TGG | 0.655436 | 7.1:-5051097 | MS.gene025690:CDS |
TCAAGTTCAACAGTTGCATG+AGG | 0.655545 | 7.1:+5055579 | None:intergenic |
GAAAGCGGAGGTGATGCCTG+AGG | 0.658645 | 7.1:+5055070 | None:intergenic |
CGTCCTGGAAATTTGCATTG+CGG | 0.662002 | 7.1:-5052307 | MS.gene025690:CDS |
ACAGAAAACCTTCAGTGGAG+AGG | 0.663248 | 7.1:-5048932 | MS.gene025690:CDS |
CTATATCCATCTTCTCCTCG+AGG | 0.665796 | 7.1:+5050255 | None:intergenic |
GAGCAACACATAGCAAACGT+TGG | 0.668240 | 7.1:+5051035 | None:intergenic |
GACACGCTTGAAACTGAAGG+AGG | 0.686824 | 7.1:+5055100 | None:intergenic |
CTTATGATTCATGGTCCATG+TGG | 0.689480 | 7.1:-5049380 | MS.gene025690:CDS |
TCATTATCCAACATTCAAGG+AGG | 0.693526 | 7.1:-5048568 | MS.gene025690:CDS |
TTAAGTATTCCAGAAAGCGG+AGG | 0.697488 | 7.1:+5055058 | None:intergenic |
TCAATGGTTGCGGAAGAGGG+AGG | 0.699129 | 7.1:+5050985 | None:intergenic |
TTGCTTATAGGATCCAACAG+AGG | 0.700938 | 7.1:-5050158 | MS.gene025690:CDS |
TATCCCGTGCTCTTTCCTCG+AGG | 0.709192 | 7.1:-5050270 | MS.gene025690:CDS |
GATGTACAAGGGTCTTACAG+AGG | 0.722668 | 7.1:-5050007 | MS.gene025690:CDS |
TACATCTCACCAATTCCAGG+TGG | 0.739466 | 7.1:+5048663 | None:intergenic |
AGTGTAGCAATATCTCTCCG+AGG | 0.743133 | 7.1:+5055181 | None:intergenic |
ACATGCATTTGTGAGCACTG+CGG | 0.855496 | 7.1:-5051110 | MS.gene025690:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 5048329 | 5058021 | 5048329 | ID=MS.gene025690 |
chr7.1 | mRNA | 5048329 | 5058021 | 5048329 | ID=MS.gene025690.t1;Parent=MS.gene025690 |
chr7.1 | exon | 5057867 | 5058021 | 5057867 | ID=MS.gene025690.t1.exon1;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5057867 | 5058021 | 5057867 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5057316 | 5057398 | 5057316 | ID=MS.gene025690.t1.exon2;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5057316 | 5057398 | 5057316 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5057175 | 5057218 | 5057175 | ID=MS.gene025690.t1.exon3;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5057175 | 5057218 | 5057175 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5056831 | 5056893 | 5056831 | ID=MS.gene025690.t1.exon4;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5056831 | 5056893 | 5056831 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5056585 | 5056722 | 5056585 | ID=MS.gene025690.t1.exon5;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5056585 | 5056722 | 5056585 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5056391 | 5056459 | 5056391 | ID=MS.gene025690.t1.exon6;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5056391 | 5056459 | 5056391 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5056126 | 5056224 | 5056126 | ID=MS.gene025690.t1.exon7;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5056126 | 5056224 | 5056126 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5055522 | 5055607 | 5055522 | ID=MS.gene025690.t1.exon8;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5055522 | 5055607 | 5055522 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5055057 | 5055264 | 5055057 | ID=MS.gene025690.t1.exon9;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5055057 | 5055264 | 5055057 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5054339 | 5054375 | 5054339 | ID=MS.gene025690.t1.exon10;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5054339 | 5054375 | 5054339 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5054147 | 5054242 | 5054147 | ID=MS.gene025690.t1.exon11;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5054147 | 5054242 | 5054147 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5052203 | 5052418 | 5052203 | ID=MS.gene025690.t1.exon12;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5052203 | 5052418 | 5052203 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5051262 | 5051360 | 5051262 | ID=MS.gene025690.t1.exon13;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5051262 | 5051360 | 5051262 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5050717 | 5051167 | 5050717 | ID=MS.gene025690.t1.exon14;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5050717 | 5051167 | 5050717 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5049796 | 5050617 | 5049796 | ID=MS.gene025690.t1.exon15;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5049796 | 5050617 | 5049796 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
chr7.1 | exon | 5048329 | 5049496 | 5048329 | ID=MS.gene025690.t1.exon16;Parent=MS.gene025690.t1 |
chr7.1 | CDS | 5048329 | 5049496 | 5048329 | ID=cds.MS.gene025690.t1;Parent=MS.gene025690.t1 |
Gene Sequence |
Protein sequence |