AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025789

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025789.t1 MTR_5g012080 97.708 349 7 1 1 348 1 349 0.0 721
MS.gene025789.t1 MTR_4g101680 61.111 378 103 16 1 348 1 364 1.28e-143 410
MS.gene025789.t1 MTR_4g036030 64.396 323 83 13 1 303 1 311 8.21e-136 390
MS.gene025789.t1 MTR_5g021710 52.751 309 125 8 5 305 6 301 2.28e-101 303
MS.gene025789.t1 MTR_8g076110 52.365 296 106 7 5 298 4 266 2.46e-96 288
MS.gene025789.t1 MTR_8g024480 42.706 377 137 9 1 317 9 366 4.45e-83 259
MS.gene025789.t1 MTR_1g096430 71.519 158 43 2 1 158 1 156 1.53e-79 246
MS.gene025789.t1 MTR_2g062730 44.551 312 130 8 7 298 10 298 4.71e-79 245
MS.gene025789.t1 MTR_4g035590 71.895 153 40 2 7 159 8 157 2.22e-77 241
MS.gene025789.t1 MTR_6g084430 54.651 172 68 4 6 172 4 170 2.71e-60 196
MS.gene025789.t1 MTR_3g435150 57.595 158 60 3 7 161 16 169 4.88e-58 190
MS.gene025789.t1 MTR_2g064090 55.769 156 65 3 7 160 6 159 5.38e-58 191
MS.gene025789.t1 MTR_4g108760 56.962 158 61 3 7 161 17 170 6.00e-58 191
MS.gene025789.t1 MTR_6g477900 55.556 153 65 3 7 158 6 156 6.72e-57 185
MS.gene025789.t1 MTR_2g078700 55.063 158 64 3 5 158 21 175 4.20e-56 187
MS.gene025789.t1 MTR_3g064580 54.545 154 66 3 7 158 6 157 2.34e-55 192
MS.gene025789.t1 MTR_6g012670 44.017 234 111 7 7 231 20 242 4.63e-55 183
MS.gene025789.t1 MTR_5g076850 55.556 153 65 3 7 158 6 156 6.66e-55 190
MS.gene025789.t1 MTR_3g109340 52.941 153 68 2 7 158 22 171 9.96e-55 183
MS.gene025789.t1 MTR_7g085220 49.102 167 69 3 5 158 6 169 1.08e-54 182
MS.gene025789.t1 MTR_1g008740 54.545 154 65 3 7 158 13 163 1.14e-54 182
MS.gene025789.t1 MTR_2g064470 42.800 250 123 9 1 242 1 238 1.24e-54 181
MS.gene025789.t1 MTR_3g070030 53.846 156 64 3 8 159 20 171 1.28e-54 182
MS.gene025789.t1 MTR_1g069805 53.595 153 64 3 7 158 10 156 1.67e-54 180
MS.gene025789.t1 MTR_1g008740 54.545 154 65 3 7 158 27 177 1.78e-54 182
MS.gene025789.t1 MTR_6g011860 45.128 195 94 2 1 185 9 200 2.33e-54 183
MS.gene025789.t1 MTR_8g467490 49.412 170 72 3 9 167 16 182 3.30e-54 183
MS.gene025789.t1 MTR_7g011130 42.460 252 99 7 10 227 22 261 5.94e-54 181
MS.gene025789.t1 MTR_3g109340 53.595 153 66 3 7 158 22 170 6.81e-54 181
MS.gene025789.t1 MTR_5g040420 39.583 240 111 6 7 231 14 234 1.95e-52 178
MS.gene025789.t1 MTR_7g011120 47.115 208 86 6 10 205 11 206 3.30e-52 175
MS.gene025789.t1 MTR_4g089135 44.390 205 79 6 6 182 14 211 3.34e-52 176
MS.gene025789.t1 MTR_7g085260 34.783 345 168 11 7 307 17 348 4.28e-52 177
MS.gene025789.t1 MTR_7g097090 52.597 154 64 4 5 156 8 154 4.53e-52 174
MS.gene025789.t1 MTR_2g080010 48.193 166 70 3 6 158 14 176 7.23e-52 176
MS.gene025789.t1 MTR_3g093040 51.634 153 71 3 7 158 108 258 9.27e-52 174
MS.gene025789.t1 MTR_4g081870 48.538 171 78 4 5 169 7 173 2.00e-51 172
MS.gene025789.t1 MTR_3g096920 49.682 157 70 3 7 159 7 158 4.52e-51 172
MS.gene025789.t1 MTR_7g005280 52.258 155 66 3 6 159 14 161 5.90e-51 170
MS.gene025789.t1 MTR_5g014300 48.750 160 73 3 5 158 4 160 6.05e-51 172
MS.gene025789.t1 MTR_5g069030 53.165 158 71 3 3 159 21 176 7.91e-51 179
MS.gene025789.t1 MTR_8g094580 49.390 164 73 3 1 159 1 159 7.97e-51 171
MS.gene025789.t1 MTR_3g088110 50.318 157 69 3 7 159 7 158 1.14e-50 171
MS.gene025789.t1 MTR_4g098630 43.939 198 94 5 5 190 4 196 6.48e-50 169
MS.gene025789.t1 MTR_5g041940 44.565 184 89 5 7 184 3 179 8.79e-50 167
MS.gene025789.t1 MTR_3g093050 50.641 156 74 3 4 158 19 172 3.39e-49 174
MS.gene025789.t1 MTR_2g068920 36.727 275 143 9 7 253 20 291 3.67e-49 167
MS.gene025789.t1 MTR_2g068880 40.693 231 109 7 7 220 21 240 3.84e-49 167
MS.gene025789.t1 MTR_3g093050 50.641 156 74 3 4 158 19 172 5.05e-49 174
MS.gene025789.t1 MTR_6g032770 50.000 158 68 4 7 158 18 170 5.23e-49 169
MS.gene025789.t1 MTR_3g116070 56.716 134 53 3 7 138 23 153 1.19e-48 167
MS.gene025789.t1 MTR_3g096920 52.349 149 65 3 7 155 7 149 2.76e-48 166
MS.gene025789.t1 MTR_7g100990 48.428 159 71 4 7 158 11 165 3.09e-48 165
MS.gene025789.t1 MTR_2g079990 50.000 154 70 4 7 158 16 164 3.10e-48 166
MS.gene025789.t1 MTR_2157s0010 47.561 164 71 4 7 158 8 168 1.09e-47 162
MS.gene025789.t1 MTR_3g096140 48.701 154 70 6 9 158 9 157 2.48e-46 159
MS.gene025789.t1 MTR_1g090720 49.682 157 70 3 9 158 44 198 4.14e-46 164
MS.gene025789.t1 MTR_4g134460 47.712 153 74 3 7 158 54 201 4.24e-46 162
MS.gene025789.t1 MTR_8g059170 48.387 155 73 3 7 158 14 164 4.27e-46 160
MS.gene025789.t1 MTR_0036s0150 50.331 151 72 3 9 158 7 155 5.16e-46 164
MS.gene025789.t1 MTR_4g075980 46.914 162 75 4 9 168 17 169 1.30e-45 157
MS.gene025789.t1 MTR_8g063550 47.712 153 73 4 9 158 8 156 2.15e-45 158
MS.gene025789.t1 MTR_3g096140 47.712 153 73 5 9 158 9 157 2.26e-45 159
MS.gene025789.t1 MTR_1g090723 49.669 151 73 3 9 158 10 158 3.06e-45 163
MS.gene025789.t1 MTR_1g090723 49.669 151 73 3 9 158 10 158 3.33e-45 163
MS.gene025789.t1 MTR_2g093810 48.447 161 68 5 7 158 14 168 3.36e-45 157
MS.gene025789.t1 MTR_5g090970 34.130 293 159 9 7 279 18 296 3.81e-45 157
MS.gene025789.t1 MTR_1g097300 48.344 151 75 3 9 158 21 169 4.27e-45 162
MS.gene025789.t1 MTR_1g090723 50.980 153 69 5 9 158 10 159 6.42e-45 162
MS.gene025789.t1 MTR_8g063550 47.403 154 74 4 9 159 8 157 9.11e-45 159
MS.gene025789.t1 MTR_8g063550 47.403 154 74 4 9 159 8 157 1.08e-44 159
MS.gene025789.t1 MTR_2g079990 43.094 181 70 4 7 158 16 192 2.48e-44 156
MS.gene025789.t1 MTR_8g099750 49.390 164 65 6 2 155 9 164 6.78e-44 151
MS.gene025789.t1 MTR_8g093580 46.753 154 75 4 9 159 8 157 1.34e-43 157
MS.gene025789.t1 MTR_5g090970 33.788 293 159 9 7 279 18 295 2.35e-43 152
MS.gene025789.t1 MTR_3g070040 47.403 154 69 3 11 159 12 158 1.17e-41 148
MS.gene025789.t1 MTR_4g052620 35.000 240 134 8 8 230 6 240 1.54e-40 143
MS.gene025789.t1 MTR_3g098810 45.833 168 76 5 2 159 9 171 4.48e-40 141
MS.gene025789.t1 MTR_3g098810 50.000 138 61 3 2 136 9 141 3.61e-38 134
MS.gene025789.t1 MTR_2g086880 50.794 126 59 2 9 134 20 142 3.81e-38 144
MS.gene025789.t1 MTR_8g023840 43.158 190 97 6 2 186 3 186 4.62e-38 140
MS.gene025789.t1 MTR_2g086880 50.794 126 59 2 9 134 20 142 5.18e-38 142
MS.gene025789.t1 MTR_8g023860 48.052 154 68 6 6 155 11 156 6.71e-37 137
MS.gene025789.t1 MTR_3g096140 43.885 139 71 5 23 158 2 136 7.39e-36 133
MS.gene025789.t1 MTR_2g086690 38.506 174 92 7 8 171 5 173 9.64e-33 122
MS.gene025789.t1 MTR_8g023930 38.500 200 105 7 7 196 24 215 6.45e-32 125
MS.gene025789.t1 MTR_8g023900 36.364 220 102 8 10 199 196 407 2.02e-31 123
MS.gene025789.t1 MTR_8g023900 40.000 155 85 6 7 158 12 161 8.72e-29 116
MS.gene025789.t1 MTR_7g105170 35.429 175 102 5 6 171 3 175 8.66e-31 117
MS.gene025789.t1 MTR_4g094302 36.250 160 83 4 7 158 11 159 2.78e-30 114
MS.gene025789.t1 MTR_8g023880 39.080 174 80 7 1 158 1 164 1.90e-28 111
MS.gene025789.t1 MTR_4g094302 40.458 131 66 3 7 136 11 130 2.71e-28 108
MS.gene025789.t1 MTR_8g094580 47.059 102 47 2 63 159 6 105 7.31e-27 106
MS.gene025789.t1 MTR_7g070140 49.367 79 39 1 61 138 15 93 1.50e-20 86.7
MS.gene025789.t1 MTR_8g093790 35.057 174 84 8 7 178 10 156 1.04e-19 85.9
MS.gene025789.t1 MTR_3g096400 30.769 169 96 5 1 157 1 160 8.85e-18 81.3
MS.gene025789.t1 MTR_7g070150 46.875 64 32 1 107 170 8 69 2.93e-14 68.2
MS.gene025789.t1 MTR_7g083330 26.875 160 112 4 7 166 18 172 4.14e-14 70.5
MS.gene025789.t1 MTR_7g083360 28.906 128 87 3 7 134 10 133 1.25e-12 65.5
MS.gene025789.t1 MTR_2g014680 26.697 221 135 10 1 201 47 260 2.40e-12 67.4
MS.gene025789.t1 MTR_1g045470 32.886 149 91 7 15 158 13 157 1.49e-11 65.1
MS.gene025789.t1 MTR_4g078875 29.825 171 99 7 1 156 42 206 5.02e-11 63.2
MS.gene025789.t1 MTR_1g087190 52.083 48 22 1 9 55 7 54 5.44e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025789.t1 AT1G62700 54.455 404 114 14 1 345 1 393 2.73e-130 378
MS.gene025789.t1 AT1G62700 54.455 404 114 14 1 345 1 393 2.73e-130 378
MS.gene025789.t1 AT1G12260 55.112 401 121 17 1 348 1 395 4.85e-128 372
MS.gene025789.t1 AT1G12260 55.348 374 109 14 1 348 1 342 1.62e-125 364
MS.gene025789.t1 AT2G18060 52.795 322 117 12 7 309 9 314 6.09e-102 305
MS.gene025789.t1 AT2G18060 52.795 322 117 12 7 309 9 314 6.09e-102 305
MS.gene025789.t1 AT4G36160 52.215 316 123 9 7 304 14 319 1.70e-100 301
MS.gene025789.t1 AT4G36160 52.215 316 123 9 7 304 10 315 1.86e-100 301
MS.gene025789.t1 AT4G36160 52.215 316 123 9 7 304 10 315 1.86e-100 301
MS.gene025789.t1 AT5G66300 52.145 303 103 11 7 295 12 286 6.92e-96 286
MS.gene025789.t1 AT5G62380 48.308 325 115 10 1 300 1 297 2.63e-91 277
MS.gene025789.t1 AT5G62380 48.308 325 115 10 1 300 1 297 2.63e-91 277
MS.gene025789.t1 AT2G46770 47.152 316 110 11 1 295 10 289 1.24e-82 255
MS.gene025789.t1 AT1G71930 50.186 269 106 10 5 262 7 258 2.84e-78 243
MS.gene025789.t1 AT1G71930 50.186 269 106 10 5 262 7 258 2.84e-78 243
MS.gene025789.t1 AT1G32770 44.654 318 128 9 1 296 10 301 3.98e-77 241
MS.gene025789.t1 AT4G10350 70.130 154 44 2 7 159 9 161 2.37e-76 238
MS.gene025789.t1 AT1G33280 71.242 153 41 2 7 159 8 157 2.51e-76 237
MS.gene025789.t1 AT3G61910 63.953 172 47 2 1 158 5 175 1.69e-75 236
MS.gene025789.t1 AT1G79580 69.281 153 45 1 7 159 17 167 2.53e-75 237
MS.gene025789.t1 AT1G79580 69.281 153 45 1 7 159 17 167 2.53e-75 237
MS.gene025789.t1 AT1G79580 69.281 153 45 1 7 159 17 167 2.53e-75 237
MS.gene025789.t1 AT1G79580 69.281 153 45 1 7 159 17 167 2.53e-75 237
MS.gene025789.t1 AT1G79580 69.281 153 45 1 7 159 17 167 2.53e-75 237
MS.gene025789.t1 AT3G18400 56.688 157 64 2 6 162 4 156 1.20e-61 200
MS.gene025789.t1 AT2G24430 56.688 157 64 2 7 162 16 169 1.24e-59 194
MS.gene025789.t1 AT2G24430 56.688 157 64 2 7 162 16 169 1.24e-59 194
MS.gene025789.t1 AT5G61430 41.667 264 130 9 7 256 16 269 7.30e-59 193
MS.gene025789.t1 AT5G39610 55.488 164 66 3 7 167 20 179 7.87e-58 189
MS.gene025789.t1 AT3G17730 55.556 153 65 3 7 158 6 156 3.13e-57 186
MS.gene025789.t1 AT3G04060 52.500 160 70 2 7 163 20 176 6.73e-57 188
MS.gene025789.t1 AT5G18270 50.888 169 76 3 7 171 21 186 1.93e-56 187
MS.gene025789.t1 AT1G65910 56.209 153 64 3 7 158 6 156 2.21e-56 194
MS.gene025789.t1 AT5G18270 50.888 169 76 3 7 171 21 186 2.99e-56 186
MS.gene025789.t1 AT5G07680 42.446 278 121 10 7 265 3 260 5.89e-56 185
MS.gene025789.t1 AT5G07680 42.446 278 121 10 7 265 17 274 9.67e-56 185
MS.gene025789.t1 AT1G76420 55.556 153 64 2 7 158 22 171 1.93e-55 184
MS.gene025789.t1 AT5G53950 54.777 157 64 3 6 158 16 169 1.95e-55 186
MS.gene025789.t1 AT3G29035 50.556 180 82 3 7 183 24 199 3.77e-55 183
MS.gene025789.t1 AT1G54330 54.375 160 69 3 7 166 6 161 1.73e-54 181
MS.gene025789.t1 AT5G17260 40.152 264 139 7 7 254 6 266 2.56e-54 185
MS.gene025789.t1 AT5G46590 47.644 191 94 3 5 190 4 193 3.14e-54 180
MS.gene025789.t1 AT1G69490 51.807 166 69 4 5 164 7 167 5.00e-54 179
MS.gene025789.t1 AT3G03200 53.846 156 68 3 7 160 6 159 1.78e-53 183
MS.gene025789.t1 AT3G10480 55.556 153 62 4 9 158 29 178 1.89e-53 182
MS.gene025789.t1 AT3G10490 52.229 157 69 4 5 158 25 178 2.11e-53 176
MS.gene025789.t1 AT4G35580 54.248 153 67 3 7 158 9 159 2.64e-53 183
MS.gene025789.t1 AT4G35580 54.248 153 67 3 7 158 9 159 3.42e-53 183
MS.gene025789.t1 AT4G35580 54.248 153 67 3 7 158 9 159 3.90e-53 183
MS.gene025789.t1 AT1G01720 46.448 183 87 4 1 178 1 177 5.41e-53 177
MS.gene025789.t1 AT3G12977 51.923 156 69 3 5 158 16 167 7.13e-53 176
MS.gene025789.t1 AT3G10480 54.902 153 62 4 9 158 29 177 1.15e-52 180
MS.gene025789.t1 AT3G15170 54.839 155 63 3 5 155 18 169 1.38e-52 176
MS.gene025789.t1 AT5G46590 58.333 132 54 1 5 136 4 134 1.81e-52 175
MS.gene025789.t1 AT1G33060 52.941 153 69 3 7 158 24 174 1.96e-52 184
MS.gene025789.t1 AT1G33060 52.941 153 69 3 7 158 24 174 2.00e-52 183
MS.gene025789.t1 AT3G10490 53.595 153 65 4 9 158 29 178 3.24e-52 179
MS.gene025789.t1 AT3G04070 49.123 171 70 5 5 162 8 174 3.45e-52 176
MS.gene025789.t1 AT2G43000 50.658 152 69 3 9 158 20 167 5.96e-52 173
MS.gene025789.t1 AT1G56010 40.000 245 118 9 5 234 17 247 7.42e-52 175
MS.gene025789.t1 AT5G39820 44.262 183 76 3 7 166 20 199 1.51e-51 174
MS.gene025789.t1 AT1G61110 48.503 167 68 3 6 158 15 177 7.28e-51 172
MS.gene025789.t1 AT3G04070 47.312 186 67 6 5 162 8 190 2.55e-50 172
MS.gene025789.t1 AT1G77450 47.305 167 79 3 6 168 9 170 1.48e-49 167
MS.gene025789.t1 AT4G27410 49.673 153 72 3 7 158 14 162 1.63e-49 168
MS.gene025789.t1 AT5G24590 50.633 158 76 2 3 159 9 165 1.85e-49 172
MS.gene025789.t1 AT4G10350 72.477 109 28 2 52 159 7 114 2.06e-49 167
MS.gene025789.t1 AT5G63790 44.615 195 90 6 6 194 49 231 2.92e-49 167
MS.gene025789.t1 AT5G63790 44.615 195 90 6 6 194 59 241 3.51e-49 167
MS.gene025789.t1 AT1G26870 45.977 174 78 4 9 170 18 187 4.09e-49 170
MS.gene025789.t1 AT5G04410 51.923 156 70 4 5 158 7 159 4.62e-49 173
MS.gene025789.t1 AT4G17980 45.000 200 85 7 5 183 4 199 5.32e-49 166
MS.gene025789.t1 AT4G17980 45.000 200 85 7 5 183 4 199 1.01e-48 166
MS.gene025789.t1 AT3G49530 49.673 153 75 2 7 158 13 164 1.28e-48 169
MS.gene025789.t1 AT5G08790 40.741 216 101 6 6 215 6 200 1.98e-48 164
MS.gene025789.t1 AT3G10500 50.323 155 74 3 5 158 7 159 2.76e-48 171
MS.gene025789.t1 AT3G49530 49.673 153 75 2 7 158 13 164 3.92e-48 169
MS.gene025789.t1 AT4G28530 48.256 172 64 5 5 158 8 172 4.38e-48 166
MS.gene025789.t1 AT3G15500 48.734 158 74 4 7 162 14 166 5.79e-48 164
MS.gene025789.t1 AT3G15510 47.879 165 70 3 11 162 21 182 9.98e-48 165
MS.gene025789.t1 AT2G33480 47.097 155 74 3 6 159 14 161 1.36e-47 162
MS.gene025789.t1 AT3G10480 46.316 190 63 6 5 158 25 211 1.43e-47 168
MS.gene025789.t1 AT1G52890 46.988 166 81 4 7 170 14 174 1.73e-47 163
MS.gene025789.t1 AT1G32510 44.809 183 92 3 5 179 4 185 3.25e-47 161
MS.gene025789.t1 AT5G13180 45.342 161 81 2 2 161 9 163 4.00e-47 160
MS.gene025789.t1 AT4G27410 45.509 167 75 4 7 158 14 179 2.39e-46 160
MS.gene025789.t1 AT2G33480 46.753 154 74 3 6 159 14 159 2.62e-46 159
MS.gene025789.t1 AT2G18060 43.983 241 100 12 88 309 2 226 3.03e-46 159
MS.gene025789.t1 AT2G02450 46.711 152 77 2 7 158 51 198 1.40e-45 160
MS.gene025789.t1 AT2G02450 46.711 152 77 2 7 158 51 198 1.62e-45 160
MS.gene025789.t1 AT1G34180 46.104 154 80 3 9 161 18 169 1.85e-45 161
MS.gene025789.t1 AT1G34190 47.771 157 73 5 9 161 18 169 4.69e-45 162
MS.gene025789.t1 AT1G34180 46.104 154 80 3 9 161 18 169 8.24e-45 161
MS.gene025789.t1 AT1G52880 47.305 167 73 3 11 165 21 184 5.10e-44 154
MS.gene025789.t1 AT2G17040 43.210 162 81 5 9 168 8 160 1.78e-43 151
MS.gene025789.t1 AT1G34180 42.771 166 80 4 9 161 18 181 5.17e-42 152
MS.gene025789.t1 AT3G12910 44.509 173 71 6 9 162 23 189 5.34e-42 148
MS.gene025789.t1 AT5G09330 46.203 158 76 5 5 158 4 156 1.16e-41 152
MS.gene025789.t1 AT5G09330 46.203 158 76 5 5 158 4 156 1.16e-41 152
MS.gene025789.t1 AT5G09330 46.203 158 76 5 5 158 4 156 1.16e-41 152
MS.gene025789.t1 AT5G09330 46.203 158 76 5 5 158 4 156 1.16e-41 152
MS.gene025789.t1 AT5G09330 46.203 158 76 5 5 158 4 156 1.16e-41 152
MS.gene025789.t1 AT1G34180 42.771 166 80 4 9 161 18 181 1.80e-41 152
MS.gene025789.t1 AT5G64060 43.312 157 82 5 5 158 4 156 2.70e-41 148
MS.gene025789.t1 AT2G27300 42.262 168 86 5 5 170 12 170 1.60e-40 145
MS.gene025789.t1 AT5G04395 46.358 151 69 3 5 143 26 176 2.69e-40 140
MS.gene025789.t1 AT5G22290 42.581 155 81 3 5 159 19 165 2.00e-39 142
MS.gene025789.t1 AT3G44290 46.825 126 64 2 9 134 16 138 1.45e-37 134
MS.gene025789.t1 AT5G61430 38.426 216 109 9 55 256 1 206 2.44e-37 135
MS.gene025789.t1 AT3G44290 46.825 126 64 2 9 134 16 138 1.16e-36 135
MS.gene025789.t1 AT1G56010 40.217 184 85 7 65 234 8 180 2.43e-35 129
MS.gene025789.t1 AT3G12977 54.128 109 44 3 52 158 10 114 4.66e-35 128
MS.gene025789.t1 AT1G32870 44.516 155 79 4 7 158 10 160 1.41e-34 133
MS.gene025789.t1 AT1G32870 44.516 155 79 4 7 158 10 160 1.79e-34 132
MS.gene025789.t1 AT1G32870 44.516 155 79 4 7 158 46 196 3.06e-34 132
MS.gene025789.t1 AT2G33480 47.573 103 52 2 58 159 3 104 3.77e-29 112
MS.gene025789.t1 AT3G44350 33.529 170 101 6 10 172 8 172 4.02e-28 110
MS.gene025789.t1 AT5G22380 35.948 153 92 4 10 156 8 160 1.20e-27 108
MS.gene025789.t1 AT4G01550 40.523 153 81 5 10 158 7 153 1.45e-27 112
MS.gene025789.t1 AT3G44350 36.364 143 82 4 10 146 8 147 3.94e-27 105
MS.gene025789.t1 AT4G01520 37.500 152 86 5 8 155 5 151 5.11e-27 108
MS.gene025789.t1 AT4G01540 37.333 150 85 5 10 155 7 151 8.33e-26 107
MS.gene025789.t1 AT4G01540 37.333 150 85 5 10 155 7 151 9.95e-26 107
MS.gene025789.t1 AT4G01540 37.333 150 85 5 10 155 7 151 1.29e-25 107
MS.gene025789.t1 AT4G01540 37.333 150 85 5 10 155 7 151 1.56e-25 107
MS.gene025789.t1 AT4G28530 45.133 113 41 3 5 100 8 116 1.73e-25 104
MS.gene025789.t1 AT1G02230 43.137 153 74 8 8 155 4 148 3.41e-25 104
MS.gene025789.t1 AT5G64530 34.524 168 79 6 7 158 3 155 7.66e-24 97.4
MS.gene025789.t1 AT3G04420 38.312 154 85 5 8 158 4 150 2.38e-23 98.6
MS.gene025789.t1 AT1G02250 44.275 131 65 5 8 134 4 130 3.74e-23 99.4
MS.gene025789.t1 AT5G64530 40.458 131 62 5 7 136 3 118 3.88e-23 94.4
MS.gene025789.t1 AT2G43000 48.315 89 43 2 72 158 2 89 3.92e-23 95.5
MS.gene025789.t1 AT3G04420 38.312 154 85 5 8 158 4 150 6.02e-23 98.2
MS.gene025789.t1 AT3G10490 54.430 79 31 3 83 158 2 78 1.20e-21 94.7
MS.gene025789.t1 AT3G10490 54.430 79 31 3 83 158 2 78 1.20e-21 94.7
MS.gene025789.t1 AT1G01010 29.020 255 149 11 10 252 6 240 3.66e-20 91.3
MS.gene025789.t1 AT5G50820 35.616 146 67 6 1 136 10 138 5.97e-19 84.0
MS.gene025789.t1 AT1G02220 40.458 131 69 5 7 134 3 127 7.16e-19 87.4
MS.gene025789.t1 AT3G56530 28.947 152 102 4 7 156 52 199 8.01e-16 77.8
MS.gene025789.t1 AT5G14000 28.834 163 102 5 1 159 9 161 4.84e-14 70.5
MS.gene025789.t1 AT5G14000 30.714 140 85 4 1 136 9 140 1.21e-13 68.2
MS.gene025789.t1 AT5G22290 40.845 71 36 2 89 159 2 66 4.62e-12 65.5
MS.gene025789.t1 AT3G04430 35.075 134 71 5 13 134 6 135 5.58e-12 64.7

Find 61 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTATGCAAATGCTTTA+TGG 0.217473 5.3:+5340147 MS.gene025789:CDS
CATGAAGAATTATGCAAAAT+AGG 0.241059 5.3:+5339367 MS.gene025789:intron
TCAAGATCAAGATGCTTCTA+AGG 0.257448 5.3:+5340251 MS.gene025789:CDS
TCATTCCAATGAGACAAATA+TGG 0.283809 5.3:-5339522 None:intergenic
TGTTGGTATGATGCATTATA+AGG 0.290690 5.3:-5339949 None:intergenic
GAGCTACAAAAGCAGGATTC+TGG 0.293307 5.3:+5339464 MS.gene025789:CDS
CGCTTAGAAACAAATGAAAA+TGG 0.311609 5.3:+5339616 MS.gene025789:CDS
AGCTACAACAATGAGGAAAA+TGG 0.315574 5.3:+5339843 MS.gene025789:CDS
TCAAACCATATTTGTCTCAT+TGG 0.325097 5.3:+5339517 MS.gene025789:CDS
AAGACTCTTGTCTTCTATAA+AGG 0.338384 5.3:+5339547 MS.gene025789:CDS
CAATCAGATTTCTGACCATT+AGG 0.344528 5.3:-5339577 None:intergenic
GCATTTGCATACTTTGTTGC+TGG 0.361225 5.3:-5340140 None:intergenic
TAGACAAATTTGTTGCTTCT+CGG 0.362135 5.3:+5340223 MS.gene025789:CDS
TTTCTAGTTGTGGAAGTTGT+AGG 0.384400 5.3:-5340056 None:intergenic
GATGAGAAGAAACTCTGCTT+GGG 0.418707 5.3:-5339924 None:intergenic
AGATTGAAGTCACGTGTTCC+TGG 0.423511 5.3:-5340353 None:intergenic
GGTAGTGTTGTTGTTGATGT+TGG 0.424074 5.3:-5339966 None:intergenic
CCACGTGTCAATCTGACAAT+TGG 0.427216 5.3:-5340382 None:intergenic
TGAAGAAGTACCATTCAGTT+TGG 0.427458 5.3:-5339399 None:intergenic
ATTGCAAATTTATAGGAAGA+AGG 0.439363 5.3:+5339787 MS.gene025789:intron
AATTTCTCACACGTTCCTCC+TGG 0.441033 5.3:+5338994 MS.gene025789:CDS
CAAATTTATAGGAAGAAGGA+TGG 0.460174 5.3:+5339791 MS.gene025789:intron
TCAATGACTCAAGAACAATA+TGG 0.470954 5.3:+5340117 MS.gene025789:CDS
ACAACACTACCCTTGCAAAC+AGG 0.477080 5.3:+5339978 MS.gene025789:CDS
AAAATCAGAAATTGGTGGCC+AGG 0.482875 5.3:+5340335 MS.gene025789:CDS
TATAAAGGAAGAGCACCTAA+TGG 0.497610 5.3:+5339562 MS.gene025789:CDS
CTAATGGTCAGAAATCTGAT+TGG 0.500760 5.3:+5339578 MS.gene025789:CDS
GCAGGATTCTGGAAAGCTAC+AGG 0.509600 5.3:+5339475 MS.gene025789:CDS
CAAGTTCTTCATCGGTCGGA+TGG 0.514498 5.3:-5339026 None:intergenic
ACAAATAGAGCTACAAAAGC+AGG 0.518256 5.3:+5339457 MS.gene025789:CDS
TGATGAGAAGAAACTCTGCT+TGG 0.519246 5.3:-5339925 None:intergenic
CTACCCTTGCAAACAGGAGT+TGG 0.522959 5.3:+5339984 MS.gene025789:CDS
AGCATTGCAAAGGAGAATTG+AGG 0.523842 5.3:-5340080 None:intergenic
GTTGGTATGATGCATTATAA+GGG 0.529739 5.3:-5339948 None:intergenic
TGATCCAACTCCTGTTTGCA+AGG 0.531456 5.3:-5339988 None:intergenic
GTCGGATGGAAACGAAATCC+AGG 0.536029 5.3:-5339012 None:intergenic
TCTCTATAAGATTGAGCCAT+GGG 0.539211 5.3:+5339116 MS.gene025789:CDS
AACTTGTTGATCACTACCTC+AGG 0.545767 5.3:+5339043 MS.gene025789:CDS
GTCAATCTGACAATTGGAGT+TGG 0.548688 5.3:-5340376 None:intergenic
CAATGATTTACAAGCAGTAG+TGG 0.549631 5.3:+5340176 MS.gene025789:CDS
TGAAAATGGAACTACTCCTC+AGG 0.553926 5.3:+5339630 MS.gene025789:CDS
TAAGTACCTTGTAGATCCCA+TGG 0.571291 5.3:-5339132 None:intergenic
CAAGATCAAGATGCTTCTAA+GGG 0.572925 5.3:+5340252 MS.gene025789:CDS
CTATTTGTACGACTGCTCGT+TGG 0.573237 5.3:-5339442 None:intergenic
TAGTGGAGCAATCAAACGAA+TGG 0.580549 5.3:+5340193 MS.gene025789:CDS
GAAGTGATGACCAAACTGAA+TGG 0.581504 5.3:+5339389 MS.gene025789:CDS
ATCTCTATAAGATTGAGCCA+TGG 0.582288 5.3:+5339115 MS.gene025789:CDS
GTGATCAACAAGTTCTTCAT+CGG 0.592849 5.3:-5339034 None:intergenic
AAATTTATAGGAAGAAGGAT+GGG 0.606307 5.3:+5339792 MS.gene025789:intron
GATCCAACTCCTGTTTGCAA+GGG 0.606580 5.3:-5339987 None:intergenic
AACTAGTAGTTATTGTAATG+TGG 0.607704 5.3:+5340275 MS.gene025789:CDS
TCAACAAGTTCTTCATCGGT+CGG 0.617043 5.3:-5339030 None:intergenic
AAATGGACGATTCACCATGT+TGG 0.625967 5.3:+5339860 MS.gene025789:CDS
ATGAGAAGAAACTCTGCTTG+GGG 0.635709 5.3:-5339923 None:intergenic
ATTGAGCCATGGGATCTACA+AGG 0.653934 5.3:+5339126 MS.gene025789:CDS
AACGAATAGCTACAACAATG+AGG 0.658581 5.3:+5339836 MS.gene025789:CDS
AGTATGCAAATGCTTTATGG+TGG 0.663879 5.3:+5340150 MS.gene025789:CDS
GATGATAATGAGCATTGCAA+AGG 0.667877 5.3:-5340090 None:intergenic
CCAATTGTCAGATTGACACG+TGG 0.699000 5.3:+5340382 MS.gene025789:CDS
ACTTGATCATCATACCAACA+TGG 0.713321 5.3:-5339874 None:intergenic
GGATGGAAACGAAATCCAGG+AGG 0.779067 5.3:-5339009 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAGTTAATTAAAATTCAAT+AGG - chr5.3:5339767-5339786 None:intergenic 15.0%
!! ATTATAAGTATTATTACCTG+AGG - chr5.3:5339649-5339668 None:intergenic 20.0%
!! TAACTTGATTGCAAATTTAT+AGG + chr5.3:5339780-5339799 MS.gene025789:intron 20.0%
!! TCTCTTATATATAAAATCGA+AGG + chr5.3:5339254-5339273 MS.gene025789:intron 20.0%
!!! ACACAACTATTGATTTTATT+AGG + chr5.3:5339731-5339750 MS.gene025789:intron 20.0%
! AAATTTATAGGAAGAAGGAT+GGG + chr5.3:5339792-5339811 MS.gene025789:intron 25.0%
! AACTAGTAGTTATTGTAATG+TGG + chr5.3:5340275-5340294 MS.gene025789:CDS 25.0%
! ATTGCAAATTTATAGGAAGA+AGG + chr5.3:5339787-5339806 MS.gene025789:intron 25.0%
! CATGAAGAATTATGCAAAAT+AGG + chr5.3:5339367-5339386 MS.gene025789:intron 25.0%
! GAATCCAAAAAATCAGAAAT+TGG + chr5.3:5340327-5340346 MS.gene025789:CDS 25.0%
!! CGGTCTTATAAAATAAAGTT+GGG + chr5.3:5339166-5339185 MS.gene025789:intron 25.0%
!!! CCAACTTTATTTTATAAGAC+CGG - chr5.3:5339168-5339187 None:intergenic 25.0%
!!! CTTGTTTTTCAGAAAAAGAA+AGG - chr5.3:5339689-5339708 None:intergenic 25.0%
AAGACTCTTGTCTTCTATAA+AGG + chr5.3:5339547-5339566 MS.gene025789:CDS 30.0%
CAAAGTATGCAAATGCTTTA+TGG + chr5.3:5340147-5340166 MS.gene025789:CDS 30.0%
CAAATTTATAGGAAGAAGGA+TGG + chr5.3:5339791-5339810 MS.gene025789:intron 30.0%
CGCTTAGAAACAAATGAAAA+TGG + chr5.3:5339616-5339635 MS.gene025789:CDS 30.0%
GGAAAAAGATAGCTTCTAAA+AGG + chr5.3:5339064-5339083 MS.gene025789:CDS 30.0%
GTTGGTATGATGCATTATAA+GGG - chr5.3:5339951-5339970 None:intergenic 30.0%
TCAAACCATATTTGTCTCAT+TGG + chr5.3:5339517-5339536 MS.gene025789:CDS 30.0%
TCAATGACTCAAGAACAATA+TGG + chr5.3:5340117-5340136 MS.gene025789:CDS 30.0%
TCATTCCAATGAGACAAATA+TGG - chr5.3:5339525-5339544 None:intergenic 30.0%
TCCAAAAAATCAGAAATTGG+TGG + chr5.3:5340330-5340349 MS.gene025789:CDS 30.0%
TGTTGGTATGATGCATTATA+AGG - chr5.3:5339952-5339971 None:intergenic 30.0%
! CCGGTCTTATAAAATAAAGT+TGG + chr5.3:5339165-5339184 MS.gene025789:intron 30.0%
!! TAGACAAATTTGTTGCTTCT+CGG + chr5.3:5340223-5340242 MS.gene025789:CDS 30.0%
!!! CTTTATTTTATAAGACCGGA+AGG - chr5.3:5339164-5339183 None:intergenic 30.0%
AACGAATAGCTACAACAATG+AGG + chr5.3:5339836-5339855 MS.gene025789:CDS 35.0%
ACAAATAGAGCTACAAAAGC+AGG + chr5.3:5339457-5339476 MS.gene025789:CDS 35.0%
ACTTGATCATCATACCAACA+TGG - chr5.3:5339877-5339896 None:intergenic 35.0%
AGCTACAACAATGAGGAAAA+TGG + chr5.3:5339843-5339862 MS.gene025789:CDS 35.0%
AGGTACTTAATTACTCCTTC+CGG + chr5.3:5339146-5339165 MS.gene025789:intron 35.0%
AGTATGCAAATGCTTTATGG+TGG + chr5.3:5340150-5340169 MS.gene025789:CDS 35.0%
ATCTCTATAAGATTGAGCCA+TGG + chr5.3:5339115-5339134 MS.gene025789:CDS 35.0%
CAAGATCAAGATGCTTCTAA+GGG + chr5.3:5340252-5340271 MS.gene025789:CDS 35.0%
CAATCAGATTTCTGACCATT+AGG - chr5.3:5339580-5339599 None:intergenic 35.0%
CAATGATTTACAAGCAGTAG+TGG + chr5.3:5340176-5340195 MS.gene025789:CDS 35.0%
CTAATGGTCAGAAATCTGAT+TGG + chr5.3:5339578-5339597 MS.gene025789:CDS 35.0%
GTGATCAACAAGTTCTTCAT+CGG - chr5.3:5339037-5339056 None:intergenic 35.0%
TCAAGATCAAGATGCTTCTA+AGG + chr5.3:5340251-5340270 MS.gene025789:CDS 35.0%
TCTCTATAAGATTGAGCCAT+GGG + chr5.3:5339116-5339135 MS.gene025789:CDS 35.0%
! GATGATAATGAGCATTGCAA+AGG - chr5.3:5340093-5340112 None:intergenic 35.0%
! TAGAAGCTATCTTTTTCCTG+AGG - chr5.3:5339062-5339081 None:intergenic 35.0%
!! TATAAAGGAAGAGCACCTAA+TGG + chr5.3:5339562-5339581 MS.gene025789:CDS 35.0%
!! TGAAGAAGTACCATTCAGTT+TGG - chr5.3:5339402-5339421 None:intergenic 35.0%
!! TTTCTAGTTGTGGAAGTTGT+AGG - chr5.3:5340059-5340078 None:intergenic 35.0%
!!! GAATTGAGGTTTTCTAGTTG+TGG - chr5.3:5340069-5340088 None:intergenic 35.0%
!!! GCCACCAATTTCTGATTTTT+TGG - chr5.3:5340334-5340353 None:intergenic 35.0%
AAATGGACGATTCACCATGT+TGG + chr5.3:5339860-5339879 MS.gene025789:CDS 40.0%
AGCATTGCAAAGGAGAATTG+AGG - chr5.3:5340083-5340102 None:intergenic 40.0%
ATGAGAAGAAACTCTGCTTG+GGG - chr5.3:5339926-5339945 None:intergenic 40.0%
GAAGTGATGACCAAACTGAA+TGG + chr5.3:5339389-5339408 MS.gene025789:CDS 40.0%
GATGAGAAGAAACTCTGCTT+GGG - chr5.3:5339927-5339946 None:intergenic 40.0%
GCATTTGCATACTTTGTTGC+TGG - chr5.3:5340143-5340162 None:intergenic 40.0%
GTCAATCTGACAATTGGAGT+TGG - chr5.3:5340379-5340398 None:intergenic 40.0%
TAAGTACCTTGTAGATCCCA+TGG - chr5.3:5339135-5339154 None:intergenic 40.0%
TAGTGGAGCAATCAAACGAA+TGG + chr5.3:5340193-5340212 MS.gene025789:CDS 40.0%
TCAACAAGTTCTTCATCGGT+CGG - chr5.3:5339033-5339052 None:intergenic 40.0%
TGAAAATGGAACTACTCCTC+AGG + chr5.3:5339630-5339649 MS.gene025789:CDS 40.0%
TGATGAGAAGAAACTCTGCT+TGG - chr5.3:5339928-5339947 None:intergenic 40.0%
! AAAATCAGAAATTGGTGGCC+AGG + chr5.3:5340335-5340354 MS.gene025789:CDS 40.0%
! GGTAGTGTTGTTGTTGATGT+TGG - chr5.3:5339969-5339988 None:intergenic 40.0%
!! AACTTGTTGATCACTACCTC+AGG + chr5.3:5339043-5339062 MS.gene025789:CDS 40.0%
AATTTCTCACACGTTCCTCC+TGG + chr5.3:5338994-5339013 MS.gene025789:CDS 45.0%
ACAACACTACCCTTGCAAAC+AGG + chr5.3:5339978-5339997 MS.gene025789:CDS 45.0%
AGATTGAAGTCACGTGTTCC+TGG - chr5.3:5340356-5340375 None:intergenic 45.0%
ATTGAGCCATGGGATCTACA+AGG + chr5.3:5339126-5339145 MS.gene025789:CDS 45.0%
CCAATTGTCAGATTGACACG+TGG + chr5.3:5340382-5340401 MS.gene025789:CDS 45.0%
CCACGTGTCAATCTGACAAT+TGG - chr5.3:5340385-5340404 None:intergenic 45.0%
CTATTTGTACGACTGCTCGT+TGG - chr5.3:5339445-5339464 None:intergenic 45.0%
GAGCTACAAAAGCAGGATTC+TGG + chr5.3:5339464-5339483 MS.gene025789:CDS 45.0%
GATCCAACTCCTGTTTGCAA+GGG - chr5.3:5339990-5340009 None:intergenic 45.0%
TGATCCAACTCCTGTTTGCA+AGG - chr5.3:5339991-5340010 None:intergenic 45.0%
!! AATAAATTAATATATAATCT+TGG - chr5.3:5339299-5339318 None:intergenic 5.0%
CAAGTTCTTCATCGGTCGGA+TGG - chr5.3:5339029-5339048 None:intergenic 50.0%
CTACCCTTGCAAACAGGAGT+TGG + chr5.3:5339984-5340003 MS.gene025789:CDS 50.0%
GGATGGAAACGAAATCCAGG+AGG - chr5.3:5339012-5339031 None:intergenic 50.0%
GTCGGATGGAAACGAAATCC+AGG - chr5.3:5339015-5339034 None:intergenic 50.0%
! GCAGGATTCTGGAAAGCTAC+AGG + chr5.3:5339475-5339494 MS.gene025789:CDS 50.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 5338988 5340410 5338988 ID=MS.gene025789
chr5.3 mRNA 5338988 5340410 5338988 ID=MS.gene025789.t1;Parent=MS.gene025789
chr5.3 exon 5338988 5339147 5338988 ID=MS.gene025789.t1.exon1;Parent=MS.gene025789.t1
chr5.3 CDS 5338988 5339147 5338988 ID=cds.MS.gene025789.t1;Parent=MS.gene025789.t1
chr5.3 exon 5339374 5339651 5339374 ID=MS.gene025789.t1.exon2;Parent=MS.gene025789.t1
chr5.3 CDS 5339374 5339651 5339374 ID=cds.MS.gene025789.t1;Parent=MS.gene025789.t1
chr5.3 exon 5339802 5340410 5339802 ID=MS.gene025789.t1.exon3;Parent=MS.gene025789.t1
chr5.3 CDS 5339802 5340410 5339802 ID=cds.MS.gene025789.t1;Parent=MS.gene025789.t1
Gene Sequence

>MS.gene025789

ATGAACAATTTCTCACACGTTCCTCCTGGATTTCGTTTCCATCCGACCGATGAAGAACTTGTTGATCACTACCTCAGGAAAAAGATAGCTTCTAAAAGGATTGATCTTGATATCATTAAAGATGTCGATCTCTATAAGATTGAGCCATGGGATCTACAAGGTACTTAATTACTCCTTCCGGTCTTATAAAATAAAGTTGGGTCAACAAAAGTTGACATGTCTGATTCAAATAAAACTAGATACATTAACTTTTATTGACATAACAGTCTCTTATATATAAAATCGAAGGAGTATTTACAATTCTAACTCCAAGATTATATATTAATTTATTAATAAATAAAAATAGATACTCACATTTGTTGCTTGTTTTGTGTTGAAACATGAAGAATTATGCAAAATAGGAAGTGATGACCAAACTGAATGGTACTTCTTCAGTCATAAAGATAAGAAGTATCCAACGAGCAGTCGTACAAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGAAGAGACAAAGCAATTTACTCAAACCATATTTGTCTCATTGGAATGAGAAAGACTCTTGTCTTCTATAAAGGAAGAGCACCTAATGGTCAGAAATCTGATTGGATCATGCATGAGTATCGCTTAGAAACAAATGAAAATGGAACTACTCCTCAGGTAATAATACTTATAATAAGCACATTTAATATTTCCTTTCTTTTTCTGAAAAACAAGAATATATTATCTCTATCTATCTACACAACTATTGATTTTATTAGGTACAAACACACCTATTGAATTTTAATTAACTTGATTGCAAATTTATAGGAAGAAGGATGGGTTGTGTGTAAAGTGTTCAAGAAACGAATAGCTACAACAATGAGGAAAATGGACGATTCACCATGTTGGTATGATGATCAAGTATCATACATGCAATCAGATCTTGAATCCCCAAGCAGAGTTTCTTCTCATCACCCTTATAATGCATCATACCAACATCAACAACAACACTACCCTTGCAAACAGGAGTTGGATCAATTGCAATACAATATACACATTAATAATAATGATGCTAATAATTTCCTACAACTTCCACAACTAGAAAACCTCAATTCTCCTTTGCAATGCTCATTATCATCACATTCAATGACTCAAGAACAATATGGCCAGCAACAAAGTATGCAAATGCTTTATGGTGGTAGCAATGATTTACAAGCAGTAGTGGAGCAATCAAACGAATGGAAAGCACTAGACAAATTTGTTGCTTCTCGGCTAAGTCAAGATCAAGATGCTTCTAAGGGAACTAGTAGTTATTGTAATGTGGCTCAACAAATTGCTTTGCTATCAAATGATGAATCCAAAAAATCAGAAATTGGTGGCCAGGAACACGTGACTTCAATCTCCAACTCCAATTGTCAGATTGACACGTGGAAATGA
Protein sequence

>MS.gene025789.t1

MNNFSHVPPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIEPWDLQELCKIGSDDQTEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAIYSNHICLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPQEEGWVVCKVFKKRIATTMRKMDDSPCWYDDQVSYMQSDLESPSRVSSHHPYNASYQHQQQHYPCKQELDQLQYNIHINNNDANNFLQLPQLENLNSPLQCSLSSHSMTQEQYGQQQSMQMLYGGSNDLQAVVEQSNEWKALDKFVASRLSQDQDASKGTSSYCNVAQQIALLSNDESKKSEIGGQEHVTSISNSNCQIDTWK