Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02583.t1 | XP_003602063.1 | 98.8 | 327 | 4 | 0 | 1 | 327 | 1 | 327 | 6.90E-188 | 666.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02583.t1 | Q9XHZ8 | 68.1 | 323 | 101 | 2 | 4 | 326 | 5 | 325 | 3.2e-125 | 449.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02583.t1 | G7J501 | 98.8 | 327 | 4 | 0 | 1 | 327 | 1 | 327 | 4.9e-188 | 666.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene02583.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02583.t1 | MTR_3g088560 | 98.777 | 327 | 4 | 0 | 1 | 327 | 1 | 327 | 0.0 | 676 |
| MS.gene02583.t1 | MTR_3g088560 | 98.361 | 244 | 4 | 0 | 84 | 327 | 14 | 257 | 0.0 | 502 |
| MS.gene02583.t1 | MTR_3g088560 | 98.760 | 242 | 3 | 0 | 86 | 327 | 31 | 272 | 2.27e-180 | 499 |
| MS.gene02583.t1 | MTR_1g029850 | 73.476 | 328 | 80 | 4 | 1 | 323 | 1 | 326 | 3.56e-176 | 491 |
| MS.gene02583.t1 | MTR_3g088560 | 98.537 | 205 | 3 | 0 | 123 | 327 | 1 | 205 | 1.80e-150 | 421 |
| MS.gene02583.t1 | MTR_3g061090 | 50.938 | 320 | 153 | 4 | 4 | 321 | 7 | 324 | 8.99e-115 | 335 |
| MS.gene02583.t1 | MTR_5g096700 | 46.273 | 322 | 168 | 4 | 2 | 321 | 7 | 325 | 1.18e-96 | 289 |
| MS.gene02583.t1 | MTR_3g061090 | 50.199 | 251 | 122 | 3 | 72 | 321 | 4 | 252 | 9.59e-81 | 246 |
| MS.gene02583.t1 | MTR_5g096700 | 45.896 | 268 | 140 | 4 | 56 | 321 | 2 | 266 | 1.21e-73 | 228 |
| MS.gene02583.t1 | MTR_5g096790 | 36.747 | 332 | 178 | 11 | 5 | 321 | 8 | 322 | 9.98e-56 | 184 |
| MS.gene02583.t1 | MTR_7g094900 | 31.298 | 131 | 85 | 2 | 161 | 289 | 545 | 672 | 4.73e-12 | 67.4 |
| MS.gene02583.t1 | MTR_7g094910 | 31.298 | 131 | 85 | 2 | 161 | 289 | 526 | 653 | 6.31e-12 | 67.0 |
| MS.gene02583.t1 | MTR_3g088660 | 27.429 | 175 | 120 | 3 | 151 | 321 | 70 | 241 | 8.09e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02583.t1 | AT1G21780 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.91e-163 | 459 |
| MS.gene02583.t1 | AT1G21780 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.91e-163 | 459 |
| MS.gene02583.t1 | AT1G55760 | 48.297 | 323 | 162 | 4 | 2 | 322 | 5 | 324 | 1.57e-110 | 325 |
| MS.gene02583.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 1.88e-14 | 73.6 |
| MS.gene02583.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.00e-14 | 73.6 |
| MS.gene02583.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.00e-14 | 73.6 |
| MS.gene02583.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 3.61e-14 | 73.2 |
| MS.gene02583.t1 | AT5G13060 | 25.926 | 162 | 115 | 3 | 129 | 289 | 538 | 695 | 3.26e-11 | 64.7 |
Find 66 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTAACTAAACTATTC+TGG | 0.154757 | 3.2:-75243324 | None:intergenic |
| TTAACATTCTTATTTGAATT+TGG | 0.187991 | 3.2:+75243198 | MS.gene02583:CDS |
| CCCTATCTGCGTGCTGAAAA+AGG | 0.234948 | 3.2:-75243257 | None:intergenic |
| TTAGAAACTTTAGAAGGTTC+TGG | 0.251823 | 3.2:-75240657 | None:intergenic |
| AGAACCTTCTAAAGTTTCTA+AGG | 0.261878 | 3.2:+75240659 | MS.gene02583:CDS |
| ATTCTTCGTGTCTCCGTTGC+CGG | 0.263401 | 3.2:+75240705 | MS.gene02583:CDS |
| CATTCATATGGCATATCTTT+AGG | 0.265199 | 3.2:-75242158 | None:intergenic |
| CAATTAAACAAGTAGATTTC+AGG | 0.285069 | 3.2:+75243013 | MS.gene02583:CDS |
| ATCCTTTCAAGCTCGGAATC+TGG | 0.336252 | 3.2:+75240495 | MS.gene02583:CDS |
| CAAGTGACATGTCTTCAATA+TGG | 0.337240 | 3.2:-75242954 | None:intergenic |
| CGCAGATAGGGAGCTAGTTA+TGG | 0.364760 | 3.2:+75243269 | MS.gene02583:CDS |
| ACAATTAACTAAACTATTCT+GGG | 0.384725 | 3.2:-75243323 | None:intergenic |
| AATAAACTTGCGGGAAGAAC+CGG | 0.390041 | 3.2:-75240724 | None:intergenic |
| CTCTCCAACCATGGCGGATA+GGG | 0.391213 | 3.2:+75240403 | None:intergenic |
| CGCAAGTTTATTGTTTCTCC+TGG | 0.392552 | 3.2:+75240735 | MS.gene02583:CDS |
| GCAGCTAATAAGTATGATAT+TGG | 0.412726 | 3.2:+75243060 | MS.gene02583:CDS |
| GCCTATTGATACTGCTTTCG+TGG | 0.426382 | 3.2:+75242104 | MS.gene02583:CDS |
| CAGTTTATGAAAGGCTGCTT+AGG | 0.427187 | 3.2:+75242061 | MS.gene02583:intron |
| GCTTTGAAACACAGGAGAAC+TGG | 0.434742 | 3.2:-75242890 | None:intergenic |
| GCTCTTCGAAGTTACTTGTA+TGG | 0.435203 | 3.2:+75242988 | MS.gene02583:CDS |
| TGTTCCTTAGAAACTTTAGA+AGG | 0.437456 | 3.2:-75240663 | None:intergenic |
| GGACACAAGATGACTTTGTC+TGG | 0.447335 | 3.2:+75242082 | MS.gene02583:CDS |
| AAACACTGTCTTGCATTGCT+TGG | 0.456346 | 3.2:+75243036 | MS.gene02583:CDS |
| TAGCATCTCAAGAACATTGT+CGG | 0.467745 | 3.2:-75243130 | None:intergenic |
| CGGAGTTAATATCTTCAAGA+AGG | 0.472730 | 3.2:-75243110 | None:intergenic |
| CCTCATCGAGCATGCGGGAG+AGG | 0.478741 | 3.2:-75242798 | None:intergenic |
| TTAACTAAACTATTCTGGGT+TGG | 0.479406 | 3.2:-75243319 | None:intergenic |
| AGGAGAAACAATAAACTTGC+GGG | 0.481416 | 3.2:-75240733 | None:intergenic |
| CGAAGAATGAAACGAGCAAC+GGG | 0.482830 | 3.2:-75240690 | None:intergenic |
| ATTAGAAACTCACATTCATA+TGG | 0.483383 | 3.2:-75242170 | None:intergenic |
| TTGAGATGCTAAATGAGGCT+TGG | 0.487814 | 3.2:+75243142 | MS.gene02583:CDS |
| CGAGCATGCGGGAGAGGCAA+TGG | 0.488185 | 3.2:-75242792 | None:intergenic |
| CAGTTACACAAGTTAAAGAA+AGG | 0.488458 | 3.2:+75243171 | MS.gene02583:CDS |
| CCCACGAAAGCAGTATCAAT+AGG | 0.495595 | 3.2:-75242105 | None:intergenic |
| TCAAGCTCGGAATCTGGAAC+TGG | 0.498675 | 3.2:+75240501 | MS.gene02583:CDS |
| AAATCTGATCCTTTCAAGCT+CGG | 0.501085 | 3.2:+75240488 | MS.gene02583:CDS |
| TCTCTCCAACCATGGCGGAT+AGG | 0.511002 | 3.2:+75240402 | None:intergenic |
| CATCGGCAGTGACAATGGTT+AGG | 0.526389 | 3.2:-75242834 | None:intergenic |
| GTAACTTCGAAGAGCAGTGC+AGG | 0.535264 | 3.2:-75242980 | None:intergenic |
| TGTTCTTGAGATGCTAAATG+AGG | 0.536700 | 3.2:+75243137 | MS.gene02583:CDS |
| CCTATTGATACTGCTTTCGT+GGG | 0.543952 | 3.2:+75242105 | MS.gene02583:CDS |
| TTCCAGATTCCGAGCTTGAA+AGG | 0.545788 | 3.2:-75240497 | None:intergenic |
| GCTAATAAGTATGATATTGG+TGG | 0.561832 | 3.2:+75243063 | MS.gene02583:CDS |
| AGTTCTATATGGTCATCTGA+TGG | 0.568409 | 3.2:+75242733 | MS.gene02583:CDS |
| GCTTGTATGCAGTTTATGAA+AGG | 0.570227 | 3.2:+75242052 | MS.gene02583:intron |
| GTGGTGAACCTAGTTCTATA+TGG | 0.574017 | 3.2:+75242722 | MS.gene02583:CDS |
| TCAGATGACCATATAGAACT+AGG | 0.576491 | 3.2:-75242730 | None:intergenic |
| GTGAGCTCTCAATGTACCAT+CGG | 0.581782 | 3.2:-75242851 | None:intergenic |
| TGTACCATCGGCAGTGACAA+TGG | 0.586089 | 3.2:-75242839 | None:intergenic |
| TGGTACATTGAGAGCTCACA+AGG | 0.587134 | 3.2:+75242855 | MS.gene02583:CDS |
| TATAGCCTCATCGAGCATGC+GGG | 0.592694 | 3.2:-75242803 | None:intergenic |
| ATTCAACATCAATGATGAAG+CGG | 0.594685 | 3.2:-75242128 | None:intergenic |
| TGAAACATGCTTTGAAACAC+AGG | 0.596849 | 3.2:-75242898 | None:intergenic |
| GTATAGCCTCATCGAGCATG+CGG | 0.598283 | 3.2:-75242804 | None:intergenic |
| CCTCTCCCGCATGCTCGATG+AGG | 0.599409 | 3.2:+75242798 | MS.gene02583:CDS |
| CTAACCATTGTCACTGCCGA+TGG | 0.602095 | 3.2:+75242835 | MS.gene02583:CDS |
| CTTGCGGGAAGAACCGGCAA+CGG | 0.610737 | 3.2:-75240718 | None:intergenic |
| CAATGGAAAATCGAAAACTT+CGG | 0.614285 | 3.2:+75240449 | MS.gene02583:CDS |
| CATGTTTCATCACAACCTGA+AGG | 0.618326 | 3.2:+75242912 | MS.gene02583:CDS |
| CAGGAGAAACAATAAACTTG+CGG | 0.623649 | 3.2:-75240734 | None:intergenic |
| AGAATGAAACGAGCAACGGG+TGG | 0.627136 | 3.2:-75240687 | None:intergenic |
| AGTGTCAACCCTATCCGCCA+TGG | 0.645297 | 3.2:-75240411 | None:intergenic |
| ACGAAGAATGAAACGAGCAA+CGG | 0.645922 | 3.2:-75240691 | None:intergenic |
| GAATGAAACGAGCAACGGGT+GGG | 0.656669 | 3.2:-75240686 | None:intergenic |
| CTGTTGCAAGATTAGCACAA+TGG | 0.667299 | 3.2:+75240432 | MS.gene02583:CDS |
| TGGTCTGAAAGATTTATGTG+AGG | 0.733733 | 3.2:+75243083 | MS.gene02583:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATAATTTTGATATAAAAA+AGG | - | chr3.2:75242578-75242597 | None:intergenic | 10.0% |
| !! | TTTGTATAAATGTGATAAAA+CGG | + | chr3.2:75240827-75240846 | MS.gene02583:intron | 15.0% |
| !!! | TTAACATTCTTATTTGAATT+TGG | + | chr3.2:75243198-75243217 | MS.gene02583:CDS | 15.0% |
| !!! | TTTCAATTCATTTTTTTTTC+AGG | + | chr3.2:75240589-75240608 | MS.gene02583:intron | 15.0% |
| !!! | TTTTTTTCTTTTCATATAGA+TGG | + | chr3.2:75240871-75240890 | MS.gene02583:intron | 15.0% |
| !! | AACAGTACTATTTAATATCT+TGG | - | chr3.2:75241380-75241399 | None:intergenic | 20.0% |
| !! | ACAGTACTATTTAATATCTT+GGG | - | chr3.2:75241379-75241398 | None:intergenic | 20.0% |
| !! | CAAAATTATAGCAATTATTC+CGG | + | chr3.2:75242587-75242606 | MS.gene02583:intron | 20.0% |
| !!! | AACAAATAACGAAAAAGTTT+TGG | - | chr3.2:75240776-75240795 | None:intergenic | 20.0% |
| !!! | GATATTTAAAATAGTCTAAG+TGG | - | chr3.2:75242545-75242564 | None:intergenic | 20.0% |
| !!! | TATTTGAAATCTGGTAAATT+CGG | - | chr3.2:75241616-75241635 | None:intergenic | 20.0% |
| ! | AAACGACACTTTAGTAATTA+GGG | - | chr3.2:75241791-75241810 | None:intergenic | 25.0% |
| ! | AACTGGAAAAATGAAAGAAA+AGG | + | chr3.2:75242413-75242432 | MS.gene02583:intron | 25.0% |
| ! | AAGAATTGAGAATATCTAGA+AGG | + | chr3.2:75241264-75241283 | MS.gene02583:intron | 25.0% |
| ! | ACATACAAATTTACGTTAGA+TGG | - | chr3.2:75241670-75241689 | None:intergenic | 25.0% |
| ! | ACTGGAAAAATGAAAGAAAA+GGG | + | chr3.2:75242414-75242433 | MS.gene02583:intron | 25.0% |
| ! | ATTAGAAACTCACATTCATA+TGG | - | chr3.2:75242173-75242192 | None:intergenic | 25.0% |
| ! | CAATTAAACAAGTAGATTTC+AGG | + | chr3.2:75243013-75243032 | MS.gene02583:CDS | 25.0% |
| ! | CGAATTTATCCAAATTAGAA+TGG | + | chr3.2:75241582-75241601 | MS.gene02583:intron | 25.0% |
| ! | GAGTTAGAAATTCATAATTC+TGG | - | chr3.2:75240900-75240919 | None:intergenic | 25.0% |
| ! | GTATTTGAGAAAACAAGTAT+AGG | - | chr3.2:75242197-75242216 | None:intergenic | 25.0% |
| ! | TCAAATACCAATATTGATGT+AGG | + | chr3.2:75242209-75242228 | MS.gene02583:intron | 25.0% |
| !! | ACTTTTCAATAGTAAGGAAT+AGG | + | chr3.2:75240613-75240632 | MS.gene02583:CDS | 25.0% |
| !! | AGATAATCCAGTAAATTTTG+TGG | - | chr3.2:75242358-75242377 | None:intergenic | 25.0% |
| !! | ATTTAAAATAGTCTAAGTGG+TGG | - | chr3.2:75242542-75242561 | None:intergenic | 25.0% |
| !! | GCTTACTTGATTTGAAATTA+GGG | + | chr3.2:75241522-75241541 | MS.gene02583:intron | 25.0% |
| !! | TCACTTGTATATTTGAAATC+TGG | - | chr3.2:75241625-75241644 | None:intergenic | 25.0% |
| !! | TGCTTACTTGATTTGAAATT+AGG | + | chr3.2:75241521-75241540 | MS.gene02583:intron | 25.0% |
| !! | TGTATTTGATAACCTTGATT+AGG | + | chr3.2:75241707-75241726 | MS.gene02583:intron | 25.0% |
| !!! | GTTTTGAAACCATTCTAATT+TGG | - | chr3.2:75241594-75241613 | None:intergenic | 25.0% |
| !!! | TCAGATTTTTTGTATGAACA+AGG | - | chr3.2:75240476-75240495 | None:intergenic | 25.0% |
| AAAACGGTAAAGTTTGTGTA+TGG | + | chr3.2:75240843-75240862 | MS.gene02583:intron | 30.0% | |
| AAATGAAAGAAAAGGGTTGT+TGG | + | chr3.2:75242421-75242440 | MS.gene02583:intron | 30.0% | |
| AAGATCGCTAAAAAGTTACA+CGG | - | chr3.2:75242278-75242297 | None:intergenic | 30.0% | |
| AATACCAATATTGATGTAGG+TGG | + | chr3.2:75242212-75242231 | MS.gene02583:intron | 30.0% | |
| AATATTGTCAATTGGAATCG+TGG | + | chr3.2:75242469-75242488 | MS.gene02583:intron | 30.0% | |
| AATTATAGCAATTATTCCGG+AGG | + | chr3.2:75242590-75242609 | MS.gene02583:intron | 30.0% | |
| ACATAAAGATGCAATGATCA+AGG | - | chr3.2:75241905-75241924 | None:intergenic | 30.0% | |
| ATATAATGAAATGCTGATCC+AGG | + | chr3.2:75242017-75242036 | MS.gene02583:intron | 30.0% | |
| ATATTGTCAATTGGAATCGT+GGG | + | chr3.2:75242470-75242489 | MS.gene02583:intron | 30.0% | |
| ATCTTACTAGCTATTGTACT+CGG | + | chr3.2:75241295-75241314 | MS.gene02583:intron | 30.0% | |
| ATTATTCAACGAATGCGAAA+CGG | - | chr3.2:75241082-75241101 | None:intergenic | 30.0% | |
| ATTCAACATCAATGATGAAG+CGG | - | chr3.2:75242131-75242150 | None:intergenic | 30.0% | |
| CAAACGACACTTTAGTAATT+AGG | - | chr3.2:75241792-75241811 | None:intergenic | 30.0% | |
| CAATGGAAAATCGAAAACTT+CGG | + | chr3.2:75240449-75240468 | MS.gene02583:CDS | 30.0% | |
| CAGTTACACAAGTTAAAGAA+AGG | + | chr3.2:75243171-75243190 | MS.gene02583:CDS | 30.0% | |
| CATTCATATGGCATATCTTT+AGG | - | chr3.2:75242161-75242180 | None:intergenic | 30.0% | |
| CTAGATATTCTCAATTCTTG+CGG | - | chr3.2:75241263-75241282 | None:intergenic | 30.0% | |
| GCAGCTAATAAGTATGATAT+TGG | + | chr3.2:75243060-75243079 | MS.gene02583:CDS | 30.0% | |
| GCTAATAAGTATGATATTGG+TGG | + | chr3.2:75243063-75243082 | MS.gene02583:CDS | 30.0% | |
| GTCTCTAATAGAAATTGACT+CGG | + | chr3.2:75241729-75241748 | MS.gene02583:intron | 30.0% | |
| GTGTGCAAAATATTGTCAAT+TGG | + | chr3.2:75242461-75242480 | MS.gene02583:intron | 30.0% | |
| TGTTCCTTAGAAACTTTAGA+AGG | - | chr3.2:75240666-75240685 | None:intergenic | 30.0% | |
| TTATGTGCTATGAGGAAATA+CGG | + | chr3.2:75241919-75241938 | MS.gene02583:intron | 30.0% | |
| TTCATATTGCATCCTCAATT+TGG | + | chr3.2:75241947-75241966 | MS.gene02583:intron | 30.0% | |
| TTCTATTAGAGACCTAATCA+AGG | - | chr3.2:75241722-75241741 | None:intergenic | 30.0% | |
| TTTGCCATTGCAATTATCTA+TGG | + | chr3.2:75241981-75242000 | MS.gene02583:intron | 30.0% | |
| ! | GATCTATTCTTTTGAACTCA+GGG | + | chr3.2:75242700-75242719 | MS.gene02583:intron | 30.0% |
| ! | TCAGGTACTTTTCAATAGTA+AGG | + | chr3.2:75240607-75240626 | MS.gene02583:intron | 30.0% |
| ! | TGATCTATTCTTTTGAACTC+AGG | + | chr3.2:75242699-75242718 | MS.gene02583:intron | 30.0% |
| ! | TGTTTTGCATGCATTATAAC+TGG | + | chr3.2:75242396-75242415 | MS.gene02583:intron | 30.0% |
| ! | TTAGAAACTTTAGAAGGTTC+TGG | - | chr3.2:75240660-75240679 | None:intergenic | 30.0% |
| !! | AGAACCTTCTAAAGTTTCTA+AGG | + | chr3.2:75240659-75240678 | MS.gene02583:CDS | 30.0% |
| AAAATATGATACCAGTGCAG+AGG | - | chr3.2:75242665-75242684 | None:intergenic | 35.0% | |
| AAATCTGATCCTTTCAAGCT+CGG | + | chr3.2:75240488-75240507 | MS.gene02583:CDS | 35.0% | |
| ACAAGCAAACAAAAATGACC+TGG | - | chr3.2:75242038-75242057 | None:intergenic | 35.0% | |
| ACTGCCATAGATAATTGCAA+TGG | - | chr3.2:75241988-75242007 | None:intergenic | 35.0% | |
| AGGAGAAACAATAAACTTGC+GGG | - | chr3.2:75240736-75240755 | None:intergenic | 35.0% | |
| AGTTCTATATGGTCATCTGA+TGG | + | chr3.2:75242733-75242752 | MS.gene02583:CDS | 35.0% | |
| ATTCCTCATTTGCCAAATTG+AGG | - | chr3.2:75241962-75241981 | None:intergenic | 35.0% | |
| CAAGTGACATGTCTTCAATA+TGG | - | chr3.2:75242957-75242976 | None:intergenic | 35.0% | |
| CAGGAGAAACAATAAACTTG+CGG | - | chr3.2:75240737-75240756 | None:intergenic | 35.0% | |
| CGATCATCTTCAACAATACT+CGG | - | chr3.2:75241051-75241070 | None:intergenic | 35.0% | |
| CGGAGTTAATATCTTCAAGA+AGG | - | chr3.2:75243113-75243132 | None:intergenic | 35.0% | |
| CTGGATTATCTTGTGTATTG+TGG | + | chr3.2:75242367-75242386 | MS.gene02583:intron | 35.0% | |
| CTGTTTGATTACCAATACAC+AGG | + | chr3.2:75242300-75242319 | MS.gene02583:intron | 35.0% | |
| GCATAGAATACCATTTCAAG+CGG | - | chr3.2:75241865-75241884 | None:intergenic | 35.0% | |
| GCTTGTATGCAGTTTATGAA+AGG | + | chr3.2:75242052-75242071 | MS.gene02583:intron | 35.0% | |
| GGCTATAGGAAAATAACACA+TGG | + | chr3.2:75241147-75241166 | MS.gene02583:intron | 35.0% | |
| GTGGATAATAGGAAGTTCAA+GGG | - | chr3.2:75242523-75242542 | None:intergenic | 35.0% | |
| TAAGCCACCTACATCAATAT+TGG | - | chr3.2:75242219-75242238 | None:intergenic | 35.0% | |
| TACAAGACTCAAACACCTTA+AGG | + | chr3.2:75241206-75241225 | MS.gene02583:intron | 35.0% | |
| TAGCATCTCAAGAACATTGT+CGG | - | chr3.2:75243133-75243152 | None:intergenic | 35.0% | |
| TCAGATGACCATATAGAACT+AGG | - | chr3.2:75242733-75242752 | None:intergenic | 35.0% | |
| TCTCTATCCAATGTCTTAGA+CGG | + | chr3.2:75241813-75241832 | MS.gene02583:intron | 35.0% | |
| TGATGTGCCACAAAATTTAC+TGG | + | chr3.2:75242348-75242367 | MS.gene02583:intron | 35.0% | |
| TGGTCTGAAAGATTTATGTG+AGG | + | chr3.2:75243083-75243102 | MS.gene02583:CDS | 35.0% | |
| TGTTCTTGAGATGCTAAATG+AGG | + | chr3.2:75243137-75243156 | MS.gene02583:CDS | 35.0% | |
| TTAGGAAATTCCGCTTGAAA+TGG | + | chr3.2:75241852-75241871 | MS.gene02583:intron | 35.0% | |
| TTGAAATGGTATTCTATGCC+TGG | + | chr3.2:75241866-75241885 | MS.gene02583:intron | 35.0% | |
| TTGCATCTTTATGTGCTATG+AGG | + | chr3.2:75241911-75241930 | MS.gene02583:intron | 35.0% | |
| ! | CGAGTATTGTTGAAGATGAT+CGG | + | chr3.2:75241049-75241068 | MS.gene02583:intron | 35.0% |
| ! | TGGTGCATATTTAGTTTACC+AGG | - | chr3.2:75240756-75240775 | None:intergenic | 35.0% |
| ! | TGTTTCTGTTATGGTCCATA+TGG | + | chr3.2:75241112-75241131 | MS.gene02583:intron | 35.0% |
| ! | TTATTTTCCTATAGCCCACA+TGG | - | chr3.2:75241143-75241162 | None:intergenic | 35.0% |
| !! | AGGTTCTGGAAAAAGATGAA+TGG | - | chr3.2:75240646-75240665 | None:intergenic | 35.0% |
| !! | CTATTGTACTCGGTTTGTTA+GGG | + | chr3.2:75241305-75241324 | MS.gene02583:intron | 35.0% |
| !! | TAGTCTAAGTGGTGGATAAT+AGG | - | chr3.2:75242534-75242553 | None:intergenic | 35.0% |
| !! | TGAAACATGCTTTGAAACAC+AGG | - | chr3.2:75242901-75242920 | None:intergenic | 35.0% |
| AAACACTGTCTTGCATTGCT+TGG | + | chr3.2:75243036-75243055 | MS.gene02583:CDS | 40.0% | |
| AACATGCAAGTCCTGTGTAT+TGG | - | chr3.2:75242314-75242333 | None:intergenic | 40.0% | |
| AAGAGTCAACTCCTCAAGTT+AGG | + | chr3.2:75241170-75241189 | MS.gene02583:intron | 40.0% | |
| AATAAACTTGCGGGAAGAAC+CGG | - | chr3.2:75240727-75240746 | None:intergenic | 40.0% | |
| ACAATACTCGGTAGCATTTG+TGG | - | chr3.2:75241039-75241058 | None:intergenic | 40.0% | |
| ACGAAGAATGAAACGAGCAA+CGG | - | chr3.2:75240694-75240713 | None:intergenic | 40.0% | |
| AGAGTCAACTCCTCAAGTTA+GGG | + | chr3.2:75241171-75241190 | MS.gene02583:intron | 40.0% | |
| ATGCAATGATCAAGGAAGAC+AGG | - | chr3.2:75241897-75241916 | None:intergenic | 40.0% | |
| CAGTTTATGAAAGGCTGCTT+AGG | + | chr3.2:75242061-75242080 | MS.gene02583:intron | 40.0% | |
| CATCCTCAATTTGGCAAATG+AGG | + | chr3.2:75241956-75241975 | MS.gene02583:intron | 40.0% | |
| CATGTTTCATCACAACCTGA+AGG | + | chr3.2:75242912-75242931 | MS.gene02583:CDS | 40.0% | |
| CCTATTGATACTGCTTTCGT+GGG | + | chr3.2:75242105-75242124 | MS.gene02583:CDS | 40.0% | |
| CTATTCAAGAGATCATCCTC+CGG | - | chr3.2:75242609-75242628 | None:intergenic | 40.0% | |
| CTGTTGCAAGATTAGCACAA+TGG | + | chr3.2:75240432-75240451 | MS.gene02583:CDS | 40.0% | |
| GCTCTTCGAAGTTACTTGTA+TGG | + | chr3.2:75242988-75243007 | MS.gene02583:CDS | 40.0% | |
| GGATCGACTATAGTGATCTT+AGG | + | chr3.2:75241834-75241853 | MS.gene02583:intron | 40.0% | |
| GGTGGATAATAGGAAGTTCA+AGG | - | chr3.2:75242524-75242543 | None:intergenic | 40.0% | |
| TAGGCTGCACATAATCCTTA+AGG | - | chr3.2:75241224-75241243 | None:intergenic | 40.0% | |
| TTAAGGATTATGTGCAGCCT+AGG | + | chr3.2:75241223-75241242 | MS.gene02583:intron | 40.0% | |
| TTGAGATGCTAAATGAGGCT+TGG | + | chr3.2:75243142-75243161 | MS.gene02583:CDS | 40.0% | |
| ! | CGCAAGTTTATTGTTTCTCC+TGG | + | chr3.2:75240735-75240754 | MS.gene02583:CDS | 40.0% |
| ! | CTATTCTTTTGAACTCAGGG+TGG | + | chr3.2:75242703-75242722 | MS.gene02583:intron | 40.0% |
| ! | GCTATTGTACTCGGTTTGTT+AGG | + | chr3.2:75241304-75241323 | MS.gene02583:intron | 40.0% |
| ! | TTGACGACTCTTTTTCCTTC+AGG | - | chr3.2:75242930-75242949 | None:intergenic | 40.0% |
| !! | GTGGTGAACCTAGTTCTATA+TGG | + | chr3.2:75242722-75242741 | MS.gene02583:CDS | 40.0% |
| AATATCTTGGGCACTCCACA+CGG | - | chr3.2:75241367-75241386 | None:intergenic | 45.0% | |
| AGCATTTGTGGTGGTTCGTA+GGG | - | chr3.2:75241027-75241046 | None:intergenic | 45.0% | |
| ATACTCGGTAGCATTTGTGG+TGG | - | chr3.2:75241036-75241055 | None:intergenic | 45.0% | |
| ATCCTTTCAAGCTCGGAATC+TGG | + | chr3.2:75240495-75240514 | MS.gene02583:CDS | 45.0% | |
| CAATGATCAAGGAAGACAGG+CGG | - | chr3.2:75241894-75241913 | None:intergenic | 45.0% | |
| CCCACGAAAGCAGTATCAAT+AGG | - | chr3.2:75242108-75242127 | None:intergenic | 45.0% | |
| CGAAGAATGAAACGAGCAAC+GGG | - | chr3.2:75240693-75240712 | None:intergenic | 45.0% | |
| GCCTATTGATACTGCTTTCG+TGG | + | chr3.2:75242104-75242123 | MS.gene02583:CDS | 45.0% | |
| GGACACAAGATGACTTTGTC+TGG | + | chr3.2:75242082-75242101 | MS.gene02583:CDS | 45.0% | |
| GGATTCCCTCTAACAGAATC+GGG | - | chr3.2:75241345-75241364 | None:intergenic | 45.0% | |
| GGGATTCCCTCTAACAGAAT+CGG | - | chr3.2:75241346-75241365 | None:intergenic | 45.0% | |
| GTGAGCTCTCAATGTACCAT+CGG | - | chr3.2:75242854-75242873 | None:intergenic | 45.0% | |
| GTTCTCTTGACCCTAACTTG+AGG | - | chr3.2:75241184-75241203 | None:intergenic | 45.0% | |
| TAGCATTTGTGGTGGTTCGT+AGG | - | chr3.2:75241028-75241047 | None:intergenic | 45.0% | |
| TCCATATGGATCAGCCATGT+GGG | + | chr3.2:75241126-75241145 | MS.gene02583:intron | 45.0% | |
| TGGTACATTGAGAGCTCACA+AGG | + | chr3.2:75242855-75242874 | MS.gene02583:CDS | 45.0% | |
| TGTCACCCGATTCTGTTAGA+GGG | + | chr3.2:75241337-75241356 | MS.gene02583:intron | 45.0% | |
| TTCCAGATTCCGAGCTTGAA+AGG | - | chr3.2:75240500-75240519 | None:intergenic | 45.0% | |
| ! | AGTCGATCCGTCTAAGACAT+TGG | - | chr3.2:75241823-75241842 | None:intergenic | 45.0% |
| ! | GCAGTGCAGTGTTTCTGTTA+TGG | + | chr3.2:75241103-75241122 | MS.gene02583:intron | 45.0% |
| !! | GCTTTGAAACACAGGAGAAC+TGG | - | chr3.2:75242893-75242912 | None:intergenic | 45.0% |
| !!! | ACCTTTTTCAGCACGCAGAT+AGG | + | chr3.2:75243256-75243275 | MS.gene02583:CDS | 45.0% |
| !!! | CCTTTTTCAGCACGCAGATA+GGG | + | chr3.2:75243257-75243276 | MS.gene02583:CDS | 45.0% |
| AGAATGAAACGAGCAACGGG+TGG | - | chr3.2:75240690-75240709 | None:intergenic | 50.0% | |
| ATATCTTGGGCACTCCACAC+GGG | - | chr3.2:75241366-75241385 | None:intergenic | 50.0% | |
| ATTCTTCGTGTCTCCGTTGC+CGG | + | chr3.2:75240705-75240724 | MS.gene02583:CDS | 50.0% | |
| ATTTGTGGTGGTTCGTAGGG+CGG | - | chr3.2:75241024-75241043 | None:intergenic | 50.0% | |
| CATCGGCAGTGACAATGGTT+AGG | - | chr3.2:75242837-75242856 | None:intergenic | 50.0% | |
| CCCTATCTGCGTGCTGAAAA+AGG | - | chr3.2:75243260-75243279 | None:intergenic | 50.0% | |
| CGACTCAATCACTTTGCGCT+GGG | - | chr3.2:75242255-75242274 | None:intergenic | 50.0% | |
| CGCAGATAGGGAGCTAGTTA+TGG | + | chr3.2:75243269-75243288 | MS.gene02583:CDS | 50.0% | |
| CTAACCATTGTCACTGCCGA+TGG | + | chr3.2:75242835-75242854 | MS.gene02583:CDS | 50.0% | |
| CTCTAACAGAATCGGGTGAC+AGG | - | chr3.2:75241338-75241357 | None:intergenic | 50.0% | |
| CTGTCACCCGATTCTGTTAG+AGG | + | chr3.2:75241336-75241355 | MS.gene02583:intron | 50.0% | |
| GAATGAAACGAGCAACGGGT+GGG | - | chr3.2:75240689-75240708 | None:intergenic | 50.0% | |
| GATACCAGTGCAGAGGTTCA+GGG | - | chr3.2:75242658-75242677 | None:intergenic | 50.0% | |
| GTAACTTCGAAGAGCAGTGC+AGG | - | chr3.2:75242983-75243002 | None:intergenic | 50.0% | |
| GTATAGCCTCATCGAGCATG+CGG | - | chr3.2:75242807-75242826 | None:intergenic | 50.0% | |
| GTCCATATGGATCAGCCATG+TGG | + | chr3.2:75241125-75241144 | MS.gene02583:intron | 50.0% | |
| TATAGCCTCATCGAGCATGC+GGG | - | chr3.2:75242806-75242825 | None:intergenic | 50.0% | |
| TGATACCAGTGCAGAGGTTC+AGG | - | chr3.2:75242659-75242678 | None:intergenic | 50.0% | |
| TGTACCATCGGCAGTGACAA+TGG | - | chr3.2:75242842-75242861 | None:intergenic | 50.0% | |
| ! | TCAAGCTCGGAATCTGGAAC+TGG | + | chr3.2:75240501-75240520 | MS.gene02583:CDS | 50.0% |
| ATGTGCAGCCTAGGAGCAAG+CGG | + | chr3.2:75241232-75241251 | MS.gene02583:intron | 55.0% | |
| CTGTTAGAGGGAATCCCGTG+TGG | + | chr3.2:75241349-75241368 | MS.gene02583:intron | 55.0% | |
| GCCCACATGGCTGATCCATA+TGG | - | chr3.2:75241130-75241149 | None:intergenic | 55.0% | |
| GCGACTCAATCACTTTGCGC+TGG | - | chr3.2:75242256-75242275 | None:intergenic | 55.0% | |
| TCTTCCCTGAACCTCTGCAC+TGG | + | chr3.2:75242651-75242670 | MS.gene02583:intron | 55.0% | |
| ! | GGATCAGCCATGTGGGCTAT+AGG | + | chr3.2:75241133-75241152 | MS.gene02583:intron | 55.0% |
| CGGACATACCGCTTGCTCCT+AGG | - | chr3.2:75241243-75241262 | None:intergenic | 60.0% | |
| CTTGCGGGAAGAACCGGCAA+CGG | - | chr3.2:75240721-75240740 | None:intergenic | 60.0% | |
| CAAGGAAGACAGGCGGCACC+AGG | - | chr3.2:75241887-75241906 | None:intergenic | 65.0% | |
| CCTCATCGAGCATGCGGGAG+AGG | - | chr3.2:75242801-75242820 | None:intergenic | 65.0% | |
| CCTCTCCCGCATGCTCGATG+AGG | + | chr3.2:75242798-75242817 | MS.gene02583:CDS | 65.0% | |
| CGAGCATGCGGGAGAGGCAA+TGG | - | chr3.2:75242795-75242814 | None:intergenic | 65.0% | |
| GGTTCGTAGGGCGGCGTGAA+AGG | - | chr3.2:75241015-75241034 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 75240413 | 75243332 | 75240413 | ID=MS.gene02583 |
| chr3.2 | mRNA | 75240413 | 75243332 | 75240413 | ID=MS.gene02583.t1;Parent=MS.gene02583 |
| chr3.2 | exon | 75240413 | 75240522 | 75240413 | ID=MS.gene02583.t1.exon1;Parent=MS.gene02583.t1 |
| chr3.2 | CDS | 75240413 | 75240522 | 75240413 | ID=cds.MS.gene02583.t1;Parent=MS.gene02583.t1 |
| chr3.2 | exon | 75240611 | 75240756 | 75240611 | ID=MS.gene02583.t1.exon2;Parent=MS.gene02583.t1 |
| chr3.2 | CDS | 75240611 | 75240756 | 75240611 | ID=cds.MS.gene02583.t1;Parent=MS.gene02583.t1 |
| chr3.2 | exon | 75242064 | 75242179 | 75242064 | ID=MS.gene02583.t1.exon3;Parent=MS.gene02583.t1 |
| chr3.2 | CDS | 75242064 | 75242179 | 75242064 | ID=cds.MS.gene02583.t1;Parent=MS.gene02583.t1 |
| chr3.2 | exon | 75242721 | 75243332 | 75242721 | ID=MS.gene02583.t1.exon4;Parent=MS.gene02583.t1 |
| chr3.2 | CDS | 75242721 | 75243332 | 75242721 | ID=cds.MS.gene02583.t1;Parent=MS.gene02583.t1 |
| Gene Sequence |
| Protein sequence |
