AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025845

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025845.t1 MTR_7g117455 79.916 478 56 14 1 459 1 457 0.0 598
MS.gene025845.t1 MTR_8g023990 43.508 439 146 14 58 451 127 508 1.01e-88 280
MS.gene025845.t1 MTR_1g058350 64.885 131 38 3 91 215 53 181 6.14e-49 170
MS.gene025845.t1 MTR_7g105370 74.257 101 23 2 114 214 65 162 2.19e-45 160
MS.gene025845.t1 MTR_5g053920 64.957 117 31 2 106 214 191 305 2.23e-44 159
MS.gene025845.t1 MTR_1g093600 61.789 123 32 2 106 215 188 308 1.88e-42 154
MS.gene025845.t1 MTR_1g116920 48.718 117 52 2 81 197 138 246 4.63e-30 119
MS.gene025845.t1 MTR_4g028130 40.659 91 49 3 109 197 314 401 7.03e-14 74.7
MS.gene025845.t1 MTR_4g028130 40.659 91 49 3 109 197 314 401 8.30e-14 74.3
MS.gene025845.t1 MTR_4g028130 39.560 91 50 3 109 197 314 401 1.21e-13 73.6
MS.gene025845.t1 MTR_2g014770 38.679 106 64 1 94 198 142 247 1.32e-13 73.6
MS.gene025845.t1 MTR_2g014770 38.679 106 64 1 94 198 142 247 1.80e-13 73.2
MS.gene025845.t1 MTR_2g011940 38.679 106 57 4 109 212 343 442 2.31e-13 72.8
MS.gene025845.t1 MTR_7g073240 40.659 91 49 3 109 197 121 208 3.19e-13 71.2
MS.gene025845.t1 MTR_2g011940 37.736 106 58 4 109 212 352 451 3.42e-13 72.0
MS.gene025845.t1 MTR_2g011940 38.679 106 57 4 109 212 352 451 3.83e-13 72.0
MS.gene025845.t1 MTR_4g088210 39.000 100 60 1 100 198 138 237 1.26e-12 70.5
MS.gene025845.t1 MTR_4g088210 39.000 100 60 1 100 198 138 237 1.39e-12 70.5
MS.gene025845.t1 MTR_8g106540 71.429 42 10 1 377 418 118 157 2.55e-11 64.7
MS.gene025845.t1 MTR_4g060460 36.111 108 68 1 108 214 164 271 4.89e-11 65.5
MS.gene025845.t1 MTR_4g060460 36.111 108 68 1 108 214 164 271 5.00e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025845.t1 AT2G46870 43.902 328 72 12 96 407 21 252 2.43e-67 218
MS.gene025845.t1 AT1G01030 75.781 128 30 1 105 231 51 178 8.45e-63 207
MS.gene025845.t1 AT1G01030 79.339 121 24 1 105 224 51 171 5.03e-61 203
MS.gene025845.t1 AT3G61970 40.575 313 84 9 95 404 11 224 4.33e-58 193
MS.gene025845.t1 AT4G01500 41.379 319 95 12 106 408 32 274 2.11e-57 193
MS.gene025845.t1 AT3G11580 63.492 126 33 2 101 215 20 143 1.92e-50 171
MS.gene025845.t1 AT3G11580 63.492 126 33 2 101 215 20 143 1.92e-50 171
MS.gene025845.t1 AT3G11580 63.492 126 33 2 101 215 20 143 1.92e-50 171
MS.gene025845.t1 AT3G11580 63.492 126 33 2 101 215 20 143 5.16e-50 171
MS.gene025845.t1 AT3G11580 64.000 125 32 2 101 214 20 142 7.20e-49 171
MS.gene025845.t1 AT2G36080 69.231 117 31 2 102 215 30 144 1.27e-47 162
MS.gene025845.t1 AT2G36080 69.231 117 31 2 102 215 30 144 1.27e-47 162
MS.gene025845.t1 AT2G36080 69.231 117 31 2 102 215 30 144 1.84e-47 164
MS.gene025845.t1 AT2G36080 69.231 117 31 2 102 215 30 144 2.10e-47 163
MS.gene025845.t1 AT5G06250 65.546 119 29 2 106 214 42 158 2.46e-47 164
MS.gene025845.t1 AT5G06250 65.546 119 29 2 106 214 42 158 3.33e-47 164
MS.gene025845.t1 AT1G13260 71.429 112 29 2 107 217 185 294 3.43e-47 166
MS.gene025845.t1 AT5G06250 65.546 119 29 2 106 214 42 158 3.56e-47 164
MS.gene025845.t1 AT1G68840 69.828 116 31 3 102 215 180 293 4.04e-47 166
MS.gene025845.t1 AT1G68840 69.828 116 31 3 102 215 180 293 4.04e-47 166
MS.gene025845.t1 AT5G06250 65.546 119 29 2 106 214 42 158 6.19e-47 163
MS.gene025845.t1 AT5G06250 65.000 120 30 2 106 215 42 159 6.82e-47 163
MS.gene025845.t1 AT1G25560 62.295 122 36 2 102 215 187 306 7.36e-44 158
MS.gene025845.t1 AT3G25730 59.524 126 42 3 97 215 166 289 8.08e-44 157
MS.gene025845.t1 AT1G50680 50.000 100 39 2 108 196 155 254 6.23e-26 108
MS.gene025845.t1 AT1G51120 49.485 97 41 1 108 196 176 272 1.90e-24 104
MS.gene025845.t1 AT2G30470 39.560 91 50 3 109 197 294 381 8.93e-14 74.3
MS.gene025845.t1 AT4G32010 40.000 95 52 3 109 201 285 376 9.86e-14 73.9
MS.gene025845.t1 AT4G32010 40.000 95 52 3 109 201 281 372 9.92e-14 73.9
MS.gene025845.t1 AT4G21550 36.283 113 64 4 109 220 327 432 4.92e-13 71.6
MS.gene025845.t1 AT4G21550 36.283 113 64 4 109 220 327 432 1.12e-12 70.5
MS.gene025845.t1 AT4G21550 36.283 113 64 4 109 220 327 432 2.12e-12 69.7
MS.gene025845.t1 AT2G33860 41.304 92 53 1 108 198 157 248 5.78e-12 68.2
MS.gene025845.t1 AT1G35240 36.893 103 59 2 110 206 126 228 4.10e-11 65.5
MS.gene025845.t1 AT2G33860 40.659 91 53 1 109 198 1 91 5.46e-11 64.7

Find 138 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCGATCTTCAAAATTT+AGG 0.195221 7.1:+227713 None:intergenic
TTCAGTGGTGCCGGCGATAT+TGG 0.224155 7.1:+226798 None:intergenic
GGAAAACGACTGAGACTATT+TGG 0.226531 7.1:-226983 MS.gene025845:CDS
CCCTCTTCTACAACAACTTC+TGG 0.253546 7.1:-226884 MS.gene025845:CDS
GTAGAAGGGGCAGCGTAATT+AGG 0.294314 7.1:+227343 None:intergenic
AACTTCGCTGCACTTTGATT+TGG 0.298974 7.1:-226834 MS.gene025845:CDS
TACTTCTCTGCGTGCTGCTT+TGG 0.305864 7.1:+227775 None:intergenic
ATGGTAAGATGTGGCGGTTC+AGG 0.308215 7.1:-227693 MS.gene025845:CDS
GAATCAATTATCATATTCAT+AGG 0.331308 7.1:+227052 None:intergenic
GGCGGTTCAGGTATTCATAT+TGG 0.345717 7.1:-227681 MS.gene025845:CDS
GTGGTTGATGGTGGCGTAAT+TGG 0.354445 7.1:+227157 None:intergenic
TGAAGAGGAGGTAGATTTGA+TGG 0.354882 7.1:-227983 MS.gene025845:CDS
TCAGTGGTGCCGGCGATATT+GGG 0.365725 7.1:+226799 None:intergenic
AAAGGCAGTGGAGGAGGAGG+AGG 0.366186 7.1:+227457 None:intergenic
CGCAGAGAAGTACTTCCCTT+TGG 0.372478 7.1:-227764 MS.gene025845:CDS
GAAAACGACTGAGACTATTT+GGG 0.373722 7.1:-226982 MS.gene025845:CDS
TGAGGATGAGATATTGTAGA+AGG 0.383802 7.1:+227328 None:intergenic
CAGAGTTATGTGATGACAAA+AGG 0.396646 7.1:-227649 MS.gene025845:CDS
TAGAAAGGCAGTGGAGGAGG+AGG 0.402946 7.1:+227454 None:intergenic
TAGGAAGGTGAGAGTATTGA+GGG 0.405354 7.1:+227368 None:intergenic
AGATAGAAAGGCAGTGGAGG+AGG 0.405784 7.1:+227451 None:intergenic
CCACCAGCTGTGGTGGTTGA+TGG 0.413549 7.1:+227145 None:intergenic
AAGGGCAATGACGAAGGATT+AGG 0.420096 7.1:-227928 MS.gene025845:CDS
GGGGCAGCGTAATTAGGATT+AGG 0.420563 7.1:+227349 None:intergenic
AATCATCACTATTCATCATA+TGG 0.429981 7.1:-227421 MS.gene025845:CDS
TAGAAATTGTTGTAATATTG+AGG 0.434930 7.1:+227310 None:intergenic
GACGAAGGATTAGGAGGAAT+AGG 0.436627 7.1:-227919 MS.gene025845:CDS
TTGATGGAGTTAAGACTTGG+AGG 0.438088 7.1:-227967 MS.gene025845:CDS
GAGGGTGGAAGTTGACGATT+AGG 0.443967 7.1:+226902 None:intergenic
CCTCTTCTACAACAACTTCT+GGG 0.444861 7.1:-226883 MS.gene025845:CDS
GACACAGATTGTACATAGAT+TGG 0.447780 7.1:-227546 MS.gene025845:CDS
GATATTGAGGGATGAGGTGG+TGG 0.450649 7.1:+227479 None:intergenic
GGAAGATAGAAAGGCAGTGG+AGG 0.452590 7.1:+227448 None:intergenic
GCGAGGAGGTGAGATAATAG+AGG 0.457021 7.1:+227179 None:intergenic
GGAGGAAGATAGAAAGGCAG+TGG 0.458358 7.1:+227445 None:intergenic
CCGCGGTGATGATGTGCAAC+TGG 0.459480 7.1:+227025 None:intergenic
ATCATGATCAACATCACATA+GGG 0.468716 7.1:-226859 MS.gene025845:CDS
AGGTGATCAGCAGCAGGAGC+AGG 0.469663 7.1:+227238 None:intergenic
GATTCTTCTACCAACGAGAA+AGG 0.473959 7.1:-227742 MS.gene025845:CDS
GAGTTAAGACTTGGAGGAGG+GGG 0.479014 7.1:-227961 MS.gene025845:CDS
TGGAGTTAAGACTTGGAGGA+GGG 0.479526 7.1:-227963 MS.gene025845:CDS
AAGGGTATTGTTCTGATAGC+AGG 0.479960 7.1:-228501 MS.gene025845:CDS
CGGCGATATTGGGAATTAGA+AGG 0.483289 7.1:+226809 None:intergenic
CGAGGAGGTGAGATAATAGA+GGG 0.488870 7.1:+227180 None:intergenic
GATTTGATGGAGTTAAGACT+TGG 0.489573 7.1:-227970 MS.gene025845:CDS
GATGATATCATCGCAATCAC+TGG 0.492831 7.1:-228457 MS.gene025845:CDS
TATGATGAATAGTGATGATT+GGG 0.494045 7.1:+227424 None:intergenic
GAGGAGGAGGAGGATATTGA+GGG 0.497580 7.1:+227467 None:intergenic
TTAGGAAGGTGAGAGTATTG+AGG 0.500486 7.1:+227367 None:intergenic
CAGCAGCAGGAGCAGGGTGG+TGG 0.502611 7.1:+227245 None:intergenic
GAGGATGAGATATTGTAGAA+GGG 0.507152 7.1:+227329 None:intergenic
CCACCATCAACCACCACAGC+TGG 0.507318 7.1:-227148 MS.gene025845:CDS
ATTCTTCTACCAACGAGAAA+GGG 0.509922 7.1:-227741 MS.gene025845:CDS
ATATGATGAATAGTGATGAT+TGG 0.513248 7.1:+227423 None:intergenic
TTCTTCAAATTCAAAGGATG+AGG 0.513842 7.1:-227893 MS.gene025845:CDS
GTTTCTTCTCCTTAACGAAA+CGG 0.517535 7.1:+227620 None:intergenic
TTCTTCTTCAGCACCACCAC+AGG 0.518188 7.1:-226933 MS.gene025845:CDS
AGGATGTTCTTCAAATTCAA+AGG 0.518491 7.1:-227899 MS.gene025845:CDS
AGGGTGGAGCCGTTTCGTTA+AGG 0.519476 7.1:-227629 MS.gene025845:CDS
TTTCAGGGATCCGTGGTGCA+AGG 0.522724 7.1:-227106 MS.gene025845:CDS
TGATTGGGAGGAAGATAGAA+AGG 0.523415 7.1:+227439 None:intergenic
ATTTGATGGAACAAGTGAAA+GGG 0.525706 7.1:-228519 None:intergenic
AGGATGAGATATTGTAGAAG+GGG 0.527536 7.1:+227330 None:intergenic
GAGACTATTTGGGGTTAACA+TGG 0.535206 7.1:-226972 MS.gene025845:CDS
GATATGATCTTCAGTGGTGC+CGG 0.535398 7.1:+226789 None:intergenic
ATGGAGTTAAGACTTGGAGG+AGG 0.540445 7.1:-227964 MS.gene025845:CDS
AGAGCATATGTTTGATAAAG+CGG 0.543449 7.1:-227839 MS.gene025845:CDS
GGAGTTAAGACTTGGAGGAG+GGG 0.544084 7.1:-227962 MS.gene025845:CDS
TTCAGGGATCCGTGGTGCAA+GGG 0.545428 7.1:-227105 MS.gene025845:CDS
CGTTGGTAGAAGAATCCAAA+GGG 0.545569 7.1:+227749 None:intergenic
AGGGTTACAGACGTCACAGC+TGG 0.549480 7.1:-228052 MS.gene025845:CDS
GAGGATATTGAGGGATGAGG+TGG 0.549967 7.1:+227476 None:intergenic
TTCAAATTCAAAGGATGAGG+AGG 0.550070 7.1:-227890 MS.gene025845:CDS
TGTACATAGATTGGAGGCCA+AGG 0.550302 7.1:-227537 MS.gene025845:CDS
CCCAGAAGTTGTTGTAGAAG+AGG 0.550466 7.1:+226883 None:intergenic
AATTTGATGGAACAAGTGAA+AGG 0.556860 7.1:-228520 None:intergenic
TTCAGCTTCCCTACGTCACT+AGG 0.557671 7.1:+227811 None:intergenic
CACTATTCATCATATGGTGG+TGG 0.562154 7.1:-227415 MS.gene025845:CDS
AGAGTTATGTGATGACAAAA+GGG 0.563519 7.1:-227648 MS.gene025845:CDS
GAGGAGGATATTGAGGGATG+AGG 0.567145 7.1:+227473 None:intergenic
GGCAATGACGAAGGATTAGG+AGG 0.574623 7.1:-227925 MS.gene025845:CDS
TTAACAAGGTGATCAGCAGC+AGG 0.575298 7.1:+227232 None:intergenic
TGTGCAATTCAGCACGTCCA+CGG 0.575558 7.1:+227569 None:intergenic
ATCATCGCAATCACTGGAGG+AGG 0.576968 7.1:-228451 MS.gene025845:CDS
CCAGAAGTTGTTGTAGAAGA+GGG 0.577780 7.1:+226884 None:intergenic
AATCAATTATCATATTCATA+GGG 0.579857 7.1:+227053 None:intergenic
TGATAGCAGGGACGAAGAGG+AGG 0.581064 7.1:-228488 MS.gene025845:CDS
GAGTACTGAGAGTGTGCCCT+TGG 0.581237 7.1:+227520 None:intergenic
CTTCTAATTCCCAATATCGC+CGG 0.581436 7.1:-226808 MS.gene025845:CDS
TTAGGCATTGCCGCCTGTGG+TGG 0.586107 7.1:+226920 None:intergenic
GATCATGATCAACATCACAT+AGG 0.586128 7.1:-226860 MS.gene025845:CDS
TTCTGATAGCAGGGACGAAG+AGG 0.587446 7.1:-228491 MS.gene025845:CDS
CACACCACCACCAGCTGTGG+TGG 0.589837 7.1:+227138 None:intergenic
TGGGAAGTTGAATGAAGAGG+AGG 0.590300 7.1:-227995 MS.gene025845:CDS
CACCACAGCTGGTGGTGGTG+TGG 0.591127 7.1:-227137 MS.gene025845:CDS
GGTGATCAGCAGCAGGAGCA+GGG 0.594253 7.1:+227239 None:intergenic
AAGGTGAGAGTATTGAGGGG+AGG 0.594874 7.1:+227372 None:intergenic
AAGGAGAAGAAACTTGATGC+TGG 0.595535 7.1:-227610 MS.gene025845:CDS
AGGGTATTGTTCTGATAGCA+GGG 0.599445 7.1:-228500 MS.gene025845:CDS
ATCCACACCACCACCAGCTG+TGG 0.603339 7.1:+227135 None:intergenic
ACAGATTGTACATAGATTGG+AGG 0.603584 7.1:-227543 MS.gene025845:CDS
TAGTATTAACATTGCCTCCG+CGG 0.604612 7.1:+227008 None:intergenic
TAGGAGAAGCCCTTTCTCGT+TGG 0.605407 7.1:+227732 None:intergenic
CGGTGACACCTAGTGACGTA+GGG 0.607439 7.1:-227819 MS.gene025845:CDS
CGATTAGGCATTGCCGCCTG+TGG 0.607948 7.1:+226917 None:intergenic
CCATCAACCACCACAGCTGG+TGG 0.608577 7.1:-227145 MS.gene025845:CDS
AGCAGGGACGAAGAGGAGGA+AGG 0.609762 7.1:-228484 MS.gene025845:CDS
ATCGAAATGGTAAGATGTGG+CGG 0.613418 7.1:-227699 MS.gene025845:CDS
CCAGCTGTGGTGGTTGATGG+TGG 0.616460 7.1:+227148 None:intergenic
CTCTTCTACAACAACTTCTG+GGG 0.618726 7.1:-226882 MS.gene025845:CDS
AGGAAGGTGAGAGTATTGAG+GGG 0.620927 7.1:+227369 None:intergenic
AAGAGCAAGGGCAATGACGA+AGG 0.626355 7.1:-227934 MS.gene025845:CDS
CATCACTATTCATCATATGG+TGG 0.627152 7.1:-227418 MS.gene025845:CDS
GAAGTTGTTGTAGAAGAGGG+TGG 0.628343 7.1:+226887 None:intergenic
CAGCGTAATTAGGATTAGGA+AGG 0.629941 7.1:+227353 None:intergenic
TCAACCACCACAGCTGGTGG+TGG 0.631467 7.1:-227142 MS.gene025845:CDS
TTCTTCAGCACCACCACAGG+CGG 0.633356 7.1:-226930 MS.gene025845:CDS
AAAACGACTGAGACTATTTG+GGG 0.634135 7.1:-226981 MS.gene025845:CDS
GATGAATAGTGATGATTGGG+AGG 0.640962 7.1:+227427 None:intergenic
GAGGAGGTGAGATAATAGAG+GGG 0.642836 7.1:+227181 None:intergenic
GGTTGGGAAGTTGAATGAAG+AGG 0.643292 7.1:-227998 MS.gene025845:CDS
TGATGGTGGCGTAATTGGCG+AGG 0.643835 7.1:+227162 None:intergenic
GCGGTGACACCTAGTGACGT+AGG 0.646130 7.1:-227820 MS.gene025845:CDS
AAGATCGAAATGGTAAGATG+TGG 0.654473 7.1:-227702 MS.gene025845:CDS
GATATCATCGCAATCACTGG+AGG 0.662602 7.1:-228454 MS.gene025845:CDS
GTACATAGATTGGAGGCCAA+GGG 0.664207 7.1:-227536 MS.gene025845:CDS
GGAGGCAATGTTAATACTAG+CGG 0.665755 7.1:-227004 MS.gene025845:CDS
GTTATGTGATGACAAAAGGG+TGG 0.673333 7.1:-227645 MS.gene025845:CDS
TTGTTGATGCCCTTGCACCA+CGG 0.680815 7.1:+227096 None:intergenic
TCGTTGGTAGAAGAATCCAA+AGG 0.680986 7.1:+227748 None:intergenic
CATGATCAACATCACATAGG+GGG 0.690937 7.1:-226857 MS.gene025845:CDS
GTTGCACATCATCACCGCGG+AGG 0.703943 7.1:-227022 MS.gene025845:CDS
GATCAGCAGCAGGAGCAGGG+TGG 0.705208 7.1:+227242 None:intergenic
TCATGATCAACATCACATAG+GGG 0.705858 7.1:-226858 MS.gene025845:CDS
TGGTGGCGTAATTGGCGAGG+AGG 0.722964 7.1:+227165 None:intergenic
GCAATTCAGCACGTCCACGG+TGG 0.740263 7.1:+227572 None:intergenic
CCAGTTGCACATCATCACCG+CGG 0.781500 7.1:-227025 MS.gene025845:CDS
GACATTGTATCATTCCACCG+TGG 0.786574 7.1:-227586 MS.gene025845:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAGAAAAGAAAAAAAA+TGG + chr7.1:226926-226945 None:intergenic 10.0%
!! AAAAAGAAAAGAAAAAAAAT+GGG + chr7.1:226925-226944 None:intergenic 10.0%
!! AAAAGAAAAGAAAAAAAATG+GGG + chr7.1:226924-226943 None:intergenic 15.0%
!! AAATCAATTCAATCTATATT+TGG - chr7.1:227182-227201 MS.gene025845:CDS 15.0%
!! AATCAATTATCATATTCATA+GGG + chr7.1:228263-228282 None:intergenic 15.0%
!! TTAATAAATACATGTATTGA+TGG - chr7.1:227107-227126 MS.gene025845:CDS 15.0%
!! AAAGAAAAGAAAAAAAATGG+GGG + chr7.1:226923-226942 None:intergenic 20.0%
!! ACGTATAATTAAGAATAAGA+TGG + chr7.1:227075-227094 None:intergenic 20.0%
!! GAATCAATTATCATATTCAT+AGG + chr7.1:228264-228283 None:intergenic 20.0%
!! TAGAAATTGTTGTAATATTG+AGG + chr7.1:228006-228025 None:intergenic 20.0%
! AATCATCACTATTCATCATA+TGG - chr7.1:227892-227911 MS.gene025845:CDS 25.0%
! ATATGATGAATAGTGATGAT+TGG + chr7.1:227893-227912 None:intergenic 25.0%
! CATTTCGATCTTCAAAATTT+AGG + chr7.1:227603-227622 None:intergenic 25.0%
! TATGATGAATAGTGATGATT+GGG + chr7.1:227892-227911 None:intergenic 25.0%
! TCAATTCAATCTATATTTGG+TGG - chr7.1:227185-227204 MS.gene025845:CDS 25.0%
!! ATGAATTAATTTGATCCACT+TGG - chr7.1:227231-227250 MS.gene025845:CDS 25.0%
!!! CTAAATTTTGAAGATCGAAA+TGG - chr7.1:227601-227620 MS.gene025845:CDS 25.0%
AGAGCATATGTTTGATAAAG+CGG - chr7.1:227474-227493 MS.gene025845:CDS 30.0%
AGAGTTATGTGATGACAAAA+GGG - chr7.1:227665-227684 MS.gene025845:CDS 30.0%
AGGATGTTCTTCAAATTCAA+AGG - chr7.1:227414-227433 MS.gene025845:CDS 30.0%
ATCATGATCAACATCACATA+GGG - chr7.1:228454-228473 MS.gene025845:CDS 30.0%
TGATCCACTTGGTATAATTA+GGG - chr7.1:227242-227261 MS.gene025845:CDS 30.0%
TTCTTCAAATTCAAAGGATG+AGG - chr7.1:227420-227439 MS.gene025845:CDS 30.0%
TTGATCCACTTGGTATAATT+AGG - chr7.1:227241-227260 MS.gene025845:CDS 30.0%
AAAACGACTGAGACTATTTG+GGG - chr7.1:228332-228351 MS.gene025845:intron 35.0%
AAGAAGAAGAAGAAGATGTG+GGG - chr7.1:227293-227312 MS.gene025845:CDS 35.0%
AAGATCGAAATGGTAAGATG+TGG - chr7.1:227611-227630 MS.gene025845:CDS 35.0%
ACAGATTGTACATAGATTGG+AGG - chr7.1:227770-227789 MS.gene025845:CDS 35.0%
ACCAAAATGAATCCATGGTT+GGG - chr7.1:227136-227155 MS.gene025845:CDS 35.0%
AGAAGAAGAAGAAGAAGATG+TGG - chr7.1:227291-227310 MS.gene025845:CDS 35.0%
AGGATGAGATATTGTAGAAG+GGG + chr7.1:227986-228005 None:intergenic 35.0%
ATTCTTCTACCAACGAGAAA+GGG - chr7.1:227572-227591 MS.gene025845:CDS 35.0%
CAGAGTTATGTGATGACAAA+AGG - chr7.1:227664-227683 MS.gene025845:CDS 35.0%
CATCACTATTCATCATATGG+TGG - chr7.1:227895-227914 MS.gene025845:CDS 35.0%
GAAAACGACTGAGACTATTT+GGG - chr7.1:228331-228350 MS.gene025845:intron 35.0%
GAAGAAGAAGAAGAAGATGT+GGG - chr7.1:227292-227311 MS.gene025845:CDS 35.0%
GACACAGATTGTACATAGAT+TGG - chr7.1:227767-227786 MS.gene025845:CDS 35.0%
GAGGATGAGATATTGTAGAA+GGG + chr7.1:227987-228006 None:intergenic 35.0%
GATCATGATCAACATCACAT+AGG - chr7.1:228453-228472 MS.gene025845:CDS 35.0%
GATTTGATGGAGTTAAGACT+TGG - chr7.1:227343-227362 MS.gene025845:CDS 35.0%
GCTAGATAGATAGATATGCA+TGG + chr7.1:226963-226982 None:intergenic 35.0%
GTAACCCTAATTATACCAAG+TGG + chr7.1:227249-227268 None:intergenic 35.0%
GTTTCTTCTCCTTAACGAAA+CGG + chr7.1:227696-227715 None:intergenic 35.0%
TCATGATCAACATCACATAG+GGG - chr7.1:228455-228474 MS.gene025845:CDS 35.0%
TGAGGATGAGATATTGTAGA+AGG + chr7.1:227988-228007 None:intergenic 35.0%
TTCAAATTCAAAGGATGAGG+AGG - chr7.1:227423-227442 MS.gene025845:CDS 35.0%
! CTTTTGTCATCACATAACTC+TGG + chr7.1:227666-227685 None:intergenic 35.0%
AACTTCGCTGCACTTTGATT+TGG - chr7.1:228479-228498 MS.gene025845:CDS 40.0%
AAGGAGAAGAAACTTGATGC+TGG - chr7.1:227703-227722 MS.gene025845:CDS 40.0%
AGAAGAAGAAGAAGATGTGG+GGG - chr7.1:227294-227313 MS.gene025845:CDS 40.0%
ATCGAAATGGTAAGATGTGG+CGG - chr7.1:227614-227633 MS.gene025845:CDS 40.0%
CACCAAAATGAATCCATGGT+TGG - chr7.1:227135-227154 MS.gene025845:CDS 40.0%
CACTATTCATCATATGGTGG+TGG - chr7.1:227898-227917 MS.gene025845:CDS 40.0%
CAGCGTAATTAGGATTAGGA+AGG + chr7.1:227963-227982 None:intergenic 40.0%
CATGATCAACATCACATAGG+GGG - chr7.1:228456-228475 MS.gene025845:CDS 40.0%
CCAAAATGAATCCATGGTTG+GGG - chr7.1:227137-227156 MS.gene025845:CDS 40.0%
CCAGAAGTTGTTGTAGAAGA+GGG + chr7.1:228432-228451 None:intergenic 40.0%
CCTCTTCTACAACAACTTCT+GGG - chr7.1:228430-228449 MS.gene025845:intron 40.0%
CTCTTCTACAACAACTTCTG+GGG - chr7.1:228431-228450 MS.gene025845:CDS 40.0%
CTTCTAATTCCCAATATCGC+CGG - chr7.1:228505-228524 MS.gene025845:CDS 40.0%
GATGAATAGTGATGATTGGG+AGG + chr7.1:227889-227908 None:intergenic 40.0%
GATGATATCATCGCAATCAC+TGG - chr7.1:226856-226875 MS.gene025845:CDS 40.0%
GATTCTTCTACCAACGAGAA+AGG - chr7.1:227571-227590 MS.gene025845:CDS 40.0%
GGAAAACGACTGAGACTATT+TGG - chr7.1:228330-228349 MS.gene025845:intron 40.0%
GGAGGCAATGTTAATACTAG+CGG - chr7.1:228309-228328 MS.gene025845:intron 40.0%
GTTATGTGATGACAAAAGGG+TGG - chr7.1:227668-227687 MS.gene025845:CDS 40.0%
TAGTATTAACATTGCCTCCG+CGG + chr7.1:228308-228327 None:intergenic 40.0%
TCCACACCAAAATGAATCCA+TGG - chr7.1:227131-227150 MS.gene025845:CDS 40.0%
TGAAGAGGAGGTAGATTTGA+TGG - chr7.1:227330-227349 MS.gene025845:CDS 40.0%
TGATTGGGAGGAAGATAGAA+AGG + chr7.1:227877-227896 None:intergenic 40.0%
TTGATGGAGTTAAGACTTGG+AGG - chr7.1:227346-227365 MS.gene025845:CDS 40.0%
! CGTTGGTAGAAGAATCCAAA+GGG + chr7.1:227567-227586 None:intergenic 40.0%
! GAGACTATTTGGGGTTAACA+TGG - chr7.1:228341-228360 MS.gene025845:intron 40.0%
! GGTGTGGATCAACATTTTCA+GGG - chr7.1:228192-228211 MS.gene025845:intron 40.0%
! TCGTTGGTAGAAGAATCCAA+AGG + chr7.1:227568-227587 None:intergenic 40.0%
! TGGTGTGGATCAACATTTTC+AGG - chr7.1:228191-228210 MS.gene025845:intron 40.0%
!! AAGGGTATTGTTCTGATAGC+AGG - chr7.1:226812-226831 MS.gene025845:CDS 40.0%
!! ACCATGGATTCATTTTGGTG+TGG + chr7.1:227135-227154 None:intergenic 40.0%
!! AGGGTATTGTTCTGATAGCA+GGG - chr7.1:226813-226832 MS.gene025845:CDS 40.0%
!! TAGGAAGGTGAGAGTATTGA+GGG + chr7.1:227948-227967 None:intergenic 40.0%
!! TTAGGAAGGTGAGAGTATTG+AGG + chr7.1:227949-227968 None:intergenic 40.0%
AAGAAGAAGATGTGGGGGTT+GGG - chr7.1:227299-227318 MS.gene025845:CDS 45.0%
AAGGGCAATGACGAAGGATT+AGG - chr7.1:227385-227404 MS.gene025845:CDS 45.0%
ATGAATCCATGGTTGGGGTT+TGG - chr7.1:227142-227161 MS.gene025845:CDS 45.0%
ATGGAGTTAAGACTTGGAGG+AGG - chr7.1:227349-227368 MS.gene025845:CDS 45.0%
CCCAGAAGTTGTTGTAGAAG+AGG + chr7.1:228433-228452 None:intergenic 45.0%
CCCTCTTCTACAACAACTTC+TGG - chr7.1:228429-228448 MS.gene025845:intron 45.0%
CGAGGAGGTGAGATAATAGA+GGG + chr7.1:228136-228155 None:intergenic 45.0%
CGGCGATATTGGGAATTAGA+AGG + chr7.1:228507-228526 None:intergenic 45.0%
GAAGTTGTTGTAGAAGAGGG+TGG + chr7.1:228429-228448 None:intergenic 45.0%
GACATTGTATCATTCCACCG+TGG - chr7.1:227727-227746 MS.gene025845:CDS 45.0%
GACGAAGGATTAGGAGGAAT+AGG - chr7.1:227394-227413 MS.gene025845:CDS 45.0%
GAGGAGGTGAGATAATAGAG+GGG + chr7.1:228135-228154 None:intergenic 45.0%
GATATCATCGCAATCACTGG+AGG - chr7.1:226859-226878 MS.gene025845:CDS 45.0%
GGCGGTTCAGGTATTCATAT+TGG - chr7.1:227632-227651 MS.gene025845:CDS 45.0%
GGTTGGGAAGTTGAATGAAG+AGG - chr7.1:227315-227334 MS.gene025845:CDS 45.0%
GTACATAGATTGGAGGCCAA+GGG - chr7.1:227777-227796 MS.gene025845:CDS 45.0%
TGAATCCATGGTTGGGGTTT+GGG - chr7.1:227143-227162 MS.gene025845:CDS 45.0%
TGGAGTTAAGACTTGGAGGA+GGG - chr7.1:227350-227369 MS.gene025845:CDS 45.0%
TGGGAAGTTGAATGAAGAGG+AGG - chr7.1:227318-227337 MS.gene025845:CDS 45.0%
TGTACATAGATTGGAGGCCA+AGG - chr7.1:227776-227795 MS.gene025845:CDS 45.0%
TTAACAAGGTGATCAGCAGC+AGG + chr7.1:228084-228103 None:intergenic 45.0%
! CCCCAACCATGGATTCATTT+TGG + chr7.1:227140-227159 None:intergenic 45.0%
!! AGGAAGGTGAGAGTATTGAG+GGG + chr7.1:227947-227966 None:intergenic 45.0%
!! TCAACATTTTCAGGGATCCG+TGG - chr7.1:228200-228219 MS.gene025845:intron 45.0%
!! AAACTATTATTATTATTATT+AGG - chr7.1:227008-227027 MS.gene025845:CDS 5.0%
!! TATTATTATTATTATTAACA+AGG + chr7.1:228098-228117 None:intergenic 5.0%
!! TTCAAAAAAAAAAAAAAAAT+TGG + chr7.1:227044-227063 None:intergenic 5.0%
AAGAGCAAGGGCAATGACGA+AGG - chr7.1:227379-227398 MS.gene025845:CDS 50.0%
AAGATCCCAAACCCCAACCA+TGG + chr7.1:227151-227170 None:intergenic 50.0%
AGATAGAAAGGCAGTGGAGG+AGG + chr7.1:227865-227884 None:intergenic 50.0%
ATCATCGCAATCACTGGAGG+AGG - chr7.1:226862-226881 MS.gene025845:CDS 50.0%
ATGGTAAGATGTGGCGGTTC+AGG - chr7.1:227620-227639 MS.gene025845:CDS 50.0%
GAAGAAGAAGATGTGGGGGT+TGG - chr7.1:227298-227317 MS.gene025845:CDS 50.0%
GAGGAGGAGGAGGATATTGA+GGG + chr7.1:227849-227868 None:intergenic 50.0%
GAGGAGGATATTGAGGGATG+AGG + chr7.1:227843-227862 None:intergenic 50.0%
GAGGATATTGAGGGATGAGG+TGG + chr7.1:227840-227859 None:intergenic 50.0%
GAGGGTGGAAGTTGACGATT+AGG + chr7.1:228414-228433 None:intergenic 50.0%
GAGTTAAGACTTGGAGGAGG+GGG - chr7.1:227352-227371 MS.gene025845:CDS 50.0%
GATATTGAGGGATGAGGTGG+TGG + chr7.1:227837-227856 None:intergenic 50.0%
GCGAGGAGGTGAGATAATAG+AGG + chr7.1:228137-228156 None:intergenic 50.0%
GGAAGATAGAAAGGCAGTGG+AGG + chr7.1:227868-227887 None:intergenic 50.0%
GGAGGAAGATAGAAAGGCAG+TGG + chr7.1:227871-227890 None:intergenic 50.0%
GGAGTTAAGACTTGGAGGAG+GGG - chr7.1:227351-227370 MS.gene025845:CDS 50.0%
GGCAATGACGAAGGATTAGG+AGG - chr7.1:227388-227407 MS.gene025845:CDS 50.0%
GGGGCAGCGTAATTAGGATT+AGG + chr7.1:227967-227986 None:intergenic 50.0%
GTAGAAGGGGCAGCGTAATT+AGG + chr7.1:227973-227992 None:intergenic 50.0%
TAGGAGAAGCCCTTTCTCGT+TGG + chr7.1:227584-227603 None:intergenic 50.0%
TGTGCAATTCAGCACGTCCA+CGG + chr7.1:227747-227766 None:intergenic 50.0%
TTCAGCTTCCCTACGTCACT+AGG + chr7.1:227505-227524 None:intergenic 50.0%
TTCTGATAGCAGGGACGAAG+AGG - chr7.1:226822-226841 MS.gene025845:CDS 50.0%
TTCTTCTTCAGCACCACCAC+AGG - chr7.1:228380-228399 MS.gene025845:intron 50.0%
TTGTTGATGCCCTTGCACCA+CGG + chr7.1:228220-228239 None:intergenic 50.0%
!! AAGGTGAGAGTATTGAGGGG+AGG + chr7.1:227944-227963 None:intergenic 50.0%
!! CGCAGAGAAGTACTTCCCTT+TGG - chr7.1:227549-227568 MS.gene025845:CDS 50.0%
!! GTGGTTGATGGTGGCGTAAT+TGG + chr7.1:228159-228178 None:intergenic 50.0%
!! TACTTCTCTGCGTGCTGCTT+TGG + chr7.1:227541-227560 None:intergenic 50.0%
AGGGTGGAGCCGTTTCGTTA+AGG - chr7.1:227684-227703 MS.gene025845:CDS 55.0%
AGGGTTACAGACGTCACAGC+TGG - chr7.1:227261-227280 MS.gene025845:CDS 55.0%
CCAGTTGCACATCATCACCG+CGG - chr7.1:228288-228307 MS.gene025845:intron 55.0%
CGGTGACACCTAGTGACGTA+GGG - chr7.1:227494-227513 MS.gene025845:CDS 55.0%
GGAGGAGGAGGAGGATATTG+AGG + chr7.1:227850-227869 None:intergenic 55.0%
TAGAAAGGCAGTGGAGGAGG+AGG + chr7.1:227862-227881 None:intergenic 55.0%
TGATAGCAGGGACGAAGAGG+AGG - chr7.1:226825-226844 MS.gene025845:CDS 55.0%
TTCAGGGATCCGTGGTGCAA+GGG - chr7.1:228208-228227 MS.gene025845:intron 55.0%
TTCTTCAGCACCACCACAGG+CGG - chr7.1:228383-228402 MS.gene025845:intron 55.0%
TTTCAGGGATCCGTGGTGCA+AGG - chr7.1:228207-228226 MS.gene025845:intron 55.0%
!! GAGTACTGAGAGTGTGCCCT+TGG + chr7.1:227796-227815 None:intergenic 55.0%
!! TCAGTGGTGCCGGCGATATT+GGG + chr7.1:228517-228536 None:intergenic 55.0%
!! TGATGGTGGCGTAATTGGCG+AGG + chr7.1:228154-228173 None:intergenic 55.0%
AAAGGCAGTGGAGGAGGAGG+AGG + chr7.1:227859-227878 None:intergenic 60.0%
AGCAGGGACGAAGAGGAGGA+AGG - chr7.1:226829-226848 MS.gene025845:CDS 60.0%
AGGAGGGGGAAGCAAGAGCA+AGG - chr7.1:227366-227385 MS.gene025845:CDS 60.0%
AGGTGATCAGCAGCAGGAGC+AGG + chr7.1:228078-228097 None:intergenic 60.0%
ATCCACACCACCACCAGCTG+TGG + chr7.1:228181-228200 None:intergenic 60.0%
CCACCAGCTGTGGTGGTTGA+TGG + chr7.1:228171-228190 None:intergenic 60.0%
CCACCATCAACCACCACAGC+TGG - chr7.1:228165-228184 MS.gene025845:intron 60.0%
CCATCAACCACCACAGCTGG+TGG - chr7.1:228168-228187 MS.gene025845:intron 60.0%
GCAATTCAGCACGTCCACGG+TGG + chr7.1:227744-227763 None:intergenic 60.0%
GCGGTGACACCTAGTGACGT+AGG - chr7.1:227493-227512 MS.gene025845:CDS 60.0%
GGAGGGGGAAGCAAGAGCAA+GGG - chr7.1:227367-227386 MS.gene025845:CDS 60.0%
GGTGATCAGCAGCAGGAGCA+GGG + chr7.1:228077-228096 None:intergenic 60.0%
GTTGCACATCATCACCGCGG+AGG - chr7.1:228291-228310 MS.gene025845:intron 60.0%
TCAACCACCACAGCTGGTGG+TGG - chr7.1:228171-228190 MS.gene025845:intron 60.0%
! CCGCGGTGATGATGTGCAAC+TGG + chr7.1:228291-228310 None:intergenic 60.0%
! CGATTAGGCATTGCCGCCTG+TGG + chr7.1:228399-228418 None:intergenic 60.0%
! TGGTGGCGTAATTGGCGAGG+AGG + chr7.1:228151-228170 None:intergenic 60.0%
! TTAGGCATTGCCGCCTGTGG+TGG + chr7.1:228396-228415 None:intergenic 60.0%
!! CCAGCTGTGGTGGTTGATGG+TGG + chr7.1:228168-228187 None:intergenic 60.0%
CACACCACCACCAGCTGTGG+TGG + chr7.1:228178-228197 None:intergenic 65.0%
GATCAGCAGCAGGAGCAGGG+TGG + chr7.1:228074-228093 None:intergenic 65.0%
!! CACCACAGCTGGTGGTGGTG+TGG - chr7.1:228176-228195 MS.gene025845:intron 65.0%
CAGCAGCAGGAGCAGGGTGG+TGG + chr7.1:228071-228090 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 226799 228536 226799 ID=MS.gene025845
chr7.1 mRNA 226799 228536 226799 ID=MS.gene025845.t1;Parent=MS.gene025845
chr7.1 exon 228431 228536 228431 ID=MS.gene025845.t1.exon1;Parent=MS.gene025845.t1
chr7.1 CDS 228431 228536 228431 ID=cds.MS.gene025845.t1;Parent=MS.gene025845.t1
chr7.1 exon 226799 228072 226799 ID=MS.gene025845.t1.exon2;Parent=MS.gene025845.t1
chr7.1 CDS 226799 228072 226799 ID=cds.MS.gene025845.t1;Parent=MS.gene025845.t1
Gene Sequence

>MS.gene025845

ATGGAACAAGTGAAAGGGTATTGTTCTGATAGCAGGGACGAAGAGGAGGAAGGTGCAGATGATATCATCGCAATCACTGGAGGAGGAGAAGAAAGCAGCAGCAGCAGTAAGTAGCATAGTACCCCCATTTTTTTTCTTTTCTTTTTTCAATTTCATGATCTCCATGCATATCTATCTATCTAGCTAGCTACAATTGCAAATAATTAATTAAACTATTATTATTATTATTAGGATTTTGATCACCAATTTTTTTTTTTTTTTTGAAGCAGATCACCATCTTATTCTTAATTATACGTGATTTATTTAATTTAATAAATACATGTATTGATGGATCCACACCAAAATGAATCCATGGTTGGGGTTTGGGATCTTGATGCATATATAAATCAATTCAATCTATATTTGGTGGAGCTATTGATTAGTAATGAATGAATGAATTAATTTGATCCACTTGGTATAATTAGGGTTACAGACGTCACAGCTGGAAGAAGAAGAAGAAGAAGAAGAAGATGTGGGGGTTGGGAAGTTGAATGAAGAGGAGGTAGATTTGATGGAGTTAAGACTTGGAGGAGGGGGAAGCAAGAGCAAGGGCAATGACGAAGGATTAGGAGGAATAGGATGTTCTTCAAATTCAAAGGATGAGGAGGCAGTAGCAGCAGTAGTAGTAGTAGAGAAAGAGCATATGTTTGATAAAGCGGTGACACCTAGTGACGTAGGGAAGCTGAATCGACTTGTGATTCCAAAGCAGCACGCAGAGAAGTACTTCCCTTTGGATTCTTCTACCAACGAGAAAGGGCTTCTCCTAAATTTTGAAGATCGAAATGGTAAGATGTGGCGGTTCAGGTATTCATATTGGAACAGTAGCCAGAGTTATGTGATGACAAAAGGGTGGAGCCGTTTCGTTAAGGAGAAGAAACTTGATGCTGGTGACATTGTATCATTCCACCGTGGACGTGCTGAATTGCACAGACACAGATTGTACATAGATTGGAGGCCAAGGGCACACTCTCAGTACTCTCATCATCATCATCATCACCACCACCTCATCCCTCAATATCCTCCTCCTCCTCCACTGCCTTTCTATCTTCCTCCCAATCATCACTATTCATCATATGGTGGTGGTACTGCTAGATCATTATACACCTCCCCTCAATACTCTCACCTTCCTAATCCTAATTACGCTGCCCCTTCTACAATATCTCATCCTCAATATTACAACAATTTCTATACTACTACTACTACTACTACACTTCATCAACAACAACAGTACCACCACCCTGCTCCTGCTGCTGATCACCTTGTTAATAATAATAATAATAACAACAACATGAATCCCCTCTATTATCTCACCTCCTCGCCAATTACGCCACCATCAACCACCACAGCTGGTGGTGGTGTGGATCAACATTTTCAGGGATCCGTGGTGCAAGGGCATCAACAAGATCAGAGAAATGTGAATGTCCCTATGAATATGATAATTGATTCAGTGCCAGTTGCACATCATCACCGCGGAGGCAATGTTAATACTAGCGGAAAACGACTGAGACTATTTGGGGTTAACATGGAATGTGATTCTTCTTCTTCTTCTTCAGCACCACCACAGGCGGCAATGCCTAATCGTCAACTTCCACCCTCTTCTACAACAACTTCTGGGGATCATGATCAACATCACATAGGGGGAACTTCGCTGCACTTTGATTTGGATCCTTCTAATTCCCAATATCGCCGGCACCACTGA
Protein sequence

>MS.gene025845.t1

MEQVKGYCSDSRDEEEEGADDIIAITGGGEESSSSRLQTSQLEEEEEEEEDVGVGKLNEEEVDLMELRLGGGGSKSKGNDEGLGGIGCSSNSKDEEAVAAVVVVEKEHMFDKAVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGRAELHRHRLYIDWRPRAHSQYSHHHHHHHHLIPQYPPPPPLPFYLPPNHHYSSYGGGTARSLYTSPQYSHLPNPNYAAPSTISHPQYYNNFYTTTTTTTLHQQQQYHHPAPAADHLVNNNNNNNNMNPLYYLTSSPITPPSTTTAGGGVDQHFQGSVVQGHQQDQRNVNVPMNMIIDSVPVAHHHRGGNVNTSGKRLRLFGVNMECDSSSSSSAPPQAAMPNRQLPPSSTTTSGDHDQHHIGGTSLHFDLDPSNSQYRRHH