Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025849.t1 | XP_003626618.2 | 92.5 | 744 | 45 | 2 | 12 | 744 | 11 | 754 | 0.00E+00 | 1311.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025849.t1 | Q6R0H1 | 40.2 | 751 | 304 | 23 | 17 | 743 | 15 | 644 | 2.3e-102 | 374.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025849.t1 | G7L558 | 92.5 | 744 | 45 | 2 | 12 | 744 | 11 | 754 | 0.0e+00 | 1311.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene025849.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025849.t1 | MTR_7g118330 | 97.043 | 744 | 11 | 2 | 12 | 744 | 11 | 754 | 0.0 | 1494 |
| MS.gene025849.t1 | MTR_3g064500 | 64.815 | 108 | 33 | 3 | 10 | 114 | 40 | 145 | 1.75e-30 | 124 |
| MS.gene025849.t1 | MTR_5g076960 | 72.043 | 93 | 24 | 1 | 17 | 109 | 34 | 124 | 6.86e-30 | 123 |
| MS.gene025849.t1 | MTR_1g067000 | 51.961 | 102 | 37 | 2 | 16 | 115 | 37 | 128 | 4.44e-29 | 118 |
| MS.gene025849.t1 | MTR_8g028655 | 53.000 | 100 | 37 | 1 | 17 | 116 | 55 | 144 | 9.89e-29 | 118 |
| MS.gene025849.t1 | MTR_6g477860 | 71.579 | 95 | 25 | 1 | 16 | 110 | 47 | 139 | 1.08e-28 | 120 |
| MS.gene025849.t1 | MTR_0123s0070 | 53.465 | 101 | 37 | 2 | 17 | 117 | 41 | 131 | 1.35e-28 | 116 |
| MS.gene025849.t1 | MTR_0123s0070 | 53.465 | 101 | 37 | 2 | 17 | 117 | 41 | 131 | 1.86e-28 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025849.t1 | AT1G01060 | 44.297 | 754 | 268 | 23 | 17 | 743 | 15 | 643 | 4.51e-122 | 380 |
| MS.gene025849.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 17 | 743 | 15 | 644 | 5.62e-122 | 379 |
| MS.gene025849.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 17 | 743 | 15 | 644 | 5.62e-122 | 379 |
| MS.gene025849.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 17 | 743 | 15 | 644 | 5.62e-122 | 379 |
| MS.gene025849.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 17 | 743 | 15 | 644 | 5.62e-122 | 379 |
| MS.gene025849.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 17 | 743 | 15 | 644 | 5.62e-122 | 379 |
| MS.gene025849.t1 | AT2G46830 | 37.550 | 751 | 290 | 30 | 12 | 739 | 9 | 603 | 6.40e-82 | 273 |
| MS.gene025849.t1 | AT1G01060 | 40.113 | 708 | 271 | 24 | 64 | 743 | 60 | 642 | 1.28e-77 | 262 |
| MS.gene025849.t1 | AT1G01060 | 40.113 | 708 | 271 | 24 | 64 | 743 | 60 | 642 | 1.28e-77 | 262 |
| MS.gene025849.t1 | AT2G46830 | 39.225 | 413 | 183 | 18 | 346 | 739 | 158 | 521 | 2.12e-44 | 168 |
| MS.gene025849.t1 | AT2G46830 | 39.225 | 413 | 183 | 18 | 346 | 739 | 158 | 521 | 2.12e-44 | 168 |
| MS.gene025849.t1 | AT5G17300 | 68.932 | 103 | 29 | 2 | 8 | 109 | 36 | 136 | 4.01e-32 | 129 |
| MS.gene025849.t1 | AT5G37260 | 68.041 | 97 | 25 | 1 | 13 | 109 | 23 | 113 | 7.12e-32 | 126 |
| MS.gene025849.t1 | AT1G18330 | 56.489 | 131 | 50 | 2 | 12 | 137 | 36 | 164 | 1.79e-31 | 126 |
| MS.gene025849.t1 | AT3G10113 | 56.489 | 131 | 50 | 2 | 12 | 137 | 51 | 179 | 2.62e-31 | 125 |
| MS.gene025849.t1 | AT1G18330 | 56.489 | 131 | 50 | 2 | 12 | 137 | 62 | 190 | 4.73e-31 | 125 |
| MS.gene025849.t1 | AT3G09600 | 53.191 | 94 | 34 | 1 | 16 | 109 | 33 | 116 | 6.24e-29 | 117 |
| MS.gene025849.t1 | AT3G09600 | 53.191 | 94 | 34 | 1 | 16 | 109 | 33 | 116 | 6.24e-29 | 117 |
| MS.gene025849.t1 | AT3G09600 | 53.191 | 94 | 34 | 1 | 16 | 109 | 33 | 116 | 6.26e-29 | 117 |
| MS.gene025849.t1 | AT3G09600 | 53.191 | 94 | 34 | 1 | 16 | 109 | 33 | 116 | 7.18e-29 | 117 |
| MS.gene025849.t1 | AT3G09600 | 53.191 | 94 | 34 | 1 | 16 | 109 | 33 | 116 | 7.18e-29 | 117 |
| MS.gene025849.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 16 | 109 | 38 | 121 | 1.21e-27 | 113 |
| MS.gene025849.t1 | AT5G52660 | 55.789 | 95 | 32 | 2 | 17 | 111 | 63 | 147 | 1.37e-27 | 114 |
| MS.gene025849.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 16 | 109 | 38 | 121 | 1.40e-27 | 114 |
| MS.gene025849.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 16 | 109 | 38 | 121 | 1.40e-27 | 114 |
| MS.gene025849.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 16 | 109 | 38 | 121 | 1.42e-27 | 113 |
| MS.gene025849.t1 | AT5G52660 | 55.789 | 95 | 32 | 2 | 17 | 111 | 63 | 147 | 1.47e-27 | 114 |
| MS.gene025849.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 16 | 109 | 38 | 121 | 1.79e-27 | 113 |
| MS.gene025849.t1 | AT4G01280 | 54.206 | 107 | 37 | 3 | 17 | 121 | 50 | 146 | 2.18e-27 | 113 |
| MS.gene025849.t1 | AT4G01280 | 54.206 | 107 | 37 | 3 | 17 | 121 | 50 | 146 | 2.20e-27 | 113 |
| MS.gene025849.t1 | AT1G01520 | 38.202 | 178 | 75 | 6 | 16 | 169 | 51 | 217 | 1.20e-26 | 110 |
| MS.gene025849.t1 | AT1G01520 | 38.202 | 178 | 75 | 6 | 16 | 169 | 51 | 217 | 1.20e-26 | 110 |
| MS.gene025849.t1 | AT1G01520 | 38.202 | 178 | 75 | 6 | 16 | 169 | 51 | 217 | 1.52e-26 | 110 |
| MS.gene025849.t1 | AT1G01520 | 38.202 | 178 | 75 | 6 | 16 | 169 | 51 | 217 | 1.52e-26 | 110 |
| MS.gene025849.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 44 | 109 | 5 | 60 | 1.19e-13 | 71.6 |
| MS.gene025849.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 44 | 109 | 5 | 60 | 1.19e-13 | 71.6 |
| MS.gene025849.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 44 | 109 | 5 | 60 | 1.21e-13 | 72.0 |
| MS.gene025849.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 44 | 109 | 5 | 60 | 1.21e-13 | 72.0 |
Find 175 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGGACGACTTGCCTTTC+GGG | 0.205941 | 7.1:-292328 | MS.gene025849:intron |
| TTCTCGGATTGAACCGATTT+CGG | 0.267063 | 7.1:+293515 | None:intergenic |
| TCCTCATGATTTGATAAATA+AGG | 0.270829 | 7.1:-292265 | MS.gene025849:CDS |
| GCTTTGCAAGCTCAACATTC+AGG | 0.271530 | 7.1:-292768 | MS.gene025849:CDS |
| TTAGCAACCTTCTTGATTCT+TGG | 0.278037 | 7.1:-292449 | MS.gene025849:CDS |
| CATTCCGCCCCTGCTTTCCT+TGG | 0.281657 | 7.1:+292053 | None:intergenic |
| TACAGGGACGACTTGCCTTT+CGG | 0.283902 | 7.1:-292329 | MS.gene025849:intron |
| GGTTTCCCATCTAGACAAAT+TGG | 0.286499 | 7.1:-293035 | MS.gene025849:CDS |
| CCCTTCCAGGCGTATCCTCT+TGG | 0.318732 | 7.1:+292002 | None:intergenic |
| CAAAGACTGCTGTGCAAATC+AGG | 0.320713 | 7.1:-300954 | MS.gene025849:CDS |
| ATATCTCCTTGATCTGTCTT+AGG | 0.340962 | 7.1:+292846 | None:intergenic |
| GGTGAACCAATTTGTCTAGA+TGG | 0.346189 | 7.1:+293029 | None:intergenic |
| CATCATCTATCTTCAACATC+TGG | 0.356720 | 7.1:+293597 | None:intergenic |
| ATGAGGAGGTGAAAAGCTTT+GGG | 0.361595 | 7.1:+292281 | None:intergenic |
| CTTGCTGCAGCATGGGCTGC+AGG | 0.364555 | 7.1:+293128 | None:intergenic |
| GAACCCTGATTCCAACAAAA+TGG | 0.366904 | 7.1:-292634 | MS.gene025849:CDS |
| CTAGAAGCCCTCAAGCTATA+TGG | 0.366925 | 7.1:-301088 | MS.gene025849:CDS |
| TTGCTCCACTATGTAATGTT+GGG | 0.369916 | 7.1:+294030 | None:intergenic |
| TTACATAGTGGAGCAAAGTA+TGG | 0.371275 | 7.1:-294023 | MS.gene025849:CDS |
| GAATCAGGGTTCTCAGAAAC+TGG | 0.380151 | 7.1:+292645 | None:intergenic |
| GACAAATTCCTGCACCATAA+GGG | 0.382064 | 7.1:-293696 | MS.gene025849:CDS |
| CATGAGGAGGTGAAAAGCTT+TGG | 0.391387 | 7.1:+292280 | None:intergenic |
| CTTGTAAAAGGTGCTGCATT+AGG | 0.396536 | 7.1:-294137 | MS.gene025849:CDS |
| CTTCTATATCGACGACTACT+AGG | 0.397927 | 7.1:+292474 | None:intergenic |
| GGATTTCTAACCATGGGTCT+TGG | 0.398079 | 7.1:-292138 | MS.gene025849:CDS |
| AAACTTAAGACTCGTCGAAC+AGG | 0.401478 | 7.1:-292108 | MS.gene025849:CDS |
| TGGTGCTGTGGACTTCGTTT+TGG | 0.406608 | 7.1:-301645 | MS.gene025849:intron |
| CACGTTGTTGATGGGAACTT+TGG | 0.409244 | 7.1:-293416 | MS.gene025849:CDS |
| ACATTGGTCTTGCGAGGATA+AGG | 0.411349 | 7.1:+294059 | None:intergenic |
| GATTCTCCTGCTTGCTCTCA+AGG | 0.412243 | 7.1:-293059 | MS.gene025849:CDS |
| AGAACAATTCTCCAACTTAG+AGG | 0.412800 | 7.1:+293538 | None:intergenic |
| TCCCATGGCCTCTGAGTTTG+TGG | 0.413076 | 7.1:-302171 | None:intergenic |
| GCTGGATTTGCGAAGAGATT+AGG | 0.415370 | 7.1:+293314 | None:intergenic |
| CCTTCCAGGCGTATCCTCTT+GGG | 0.419975 | 7.1:+292003 | None:intergenic |
| GAGAAGGAAGCACTTGTAAA+AGG | 0.422043 | 7.1:-294149 | MS.gene025849:CDS |
| CGAGCATGGCAGCGTATAGA+AGG | 0.422755 | 7.1:-301064 | MS.gene025849:intron |
| GGAGAATTGTTCTCCGAAAT+CGG | 0.424106 | 7.1:-293528 | MS.gene025849:CDS |
| AGACAAATTCCTGCACCATA+AGG | 0.431378 | 7.1:-293697 | MS.gene025849:CDS |
| TCACTTGTGTTTGATGCAGC+TGG | 0.433165 | 7.1:+293296 | None:intergenic |
| AGCAAAACTTGCTGCAGCAT+GGG | 0.435145 | 7.1:+293121 | None:intergenic |
| GCTTTGGGGCAACACCTCTC+TGG | 0.439351 | 7.1:+292296 | None:intergenic |
| ACCTTGTTCATCTGTATCTT+CGG | 0.439780 | 7.1:-293753 | MS.gene025849:CDS |
| AAATGCATTTCTTGCTCTCA+AGG | 0.445522 | 7.1:+292217 | None:intergenic |
| TAGTAGAGGCCAAGGAAAGC+AGG | 0.446953 | 7.1:-292062 | MS.gene025849:CDS |
| ACTGCATGGTGGGCAGCTCA+TGG | 0.449940 | 7.1:-292963 | MS.gene025849:CDS |
| ATCACTGTGCACGTTGTTGA+TGG | 0.454210 | 7.1:-293425 | MS.gene025849:CDS |
| TGTTTACTAATATTTGTTGA+TGG | 0.455780 | 7.1:+292873 | None:intergenic |
| GAGGACAGGCAAAAGCTGTC+TGG | 0.462645 | 7.1:+292916 | None:intergenic |
| ACAAATTCCTGCACCATAAG+GGG | 0.465629 | 7.1:-293695 | MS.gene025849:CDS |
| GTTTATATCAAGATTAATAG+TGG | 0.465812 | 7.1:+292671 | None:intergenic |
| CTTGCTCATGCAGAACATAT+AGG | 0.466013 | 7.1:-300979 | MS.gene025849:intron |
| CAAGGAAAGCAGGGGCGGAA+TGG | 0.468012 | 7.1:-292052 | MS.gene025849:CDS |
| TGCTCGGCCATATAGCTTGA+GGG | 0.477143 | 7.1:+301081 | None:intergenic |
| AGCTGCCGCAACTGCATGGT+GGG | 0.477985 | 7.1:-292973 | MS.gene025849:CDS |
| TTGCGAGGATAAGGATTGCT+TGG | 0.483780 | 7.1:+294068 | None:intergenic |
| GACTCTACATTTCAGCCAAT+AGG | 0.484471 | 7.1:-293353 | MS.gene025849:CDS |
| TTTGCTCCACTATGTAATGT+TGG | 0.491563 | 7.1:+294029 | None:intergenic |
| CAACCACCTAAGACAGATCA+AGG | 0.494885 | 7.1:-292852 | MS.gene025849:CDS |
| CAAGAGGATACGCCTGGAAG+GGG | 0.496539 | 7.1:-292001 | MS.gene025849:CDS |
| GTAGCTAAATGATCCGCATC+AGG | 0.496824 | 7.1:+292501 | None:intergenic |
| TCAGCATGGTTATGTGCAAA+TGG | 0.496955 | 7.1:+293218 | None:intergenic |
| TGGGACCCGTCTCTTCAACT+TGG | 0.503574 | 7.1:+292022 | None:intergenic |
| CCAAGAGGATACGCCTGGAA+GGG | 0.504041 | 7.1:-292002 | MS.gene025849:CDS |
| AGTTGTTGATGCAGGAGGAC+AGG | 0.504260 | 7.1:+292902 | None:intergenic |
| GTTATTACCTCTTTCACTGA+AGG | 0.506309 | 7.1:+293665 | None:intergenic |
| CTTCTATACGCTGCCATGCT+CGG | 0.509729 | 7.1:+301065 | None:intergenic |
| AGCTGCCCACCATGCAGTTG+CGG | 0.510071 | 7.1:+292968 | None:intergenic |
| GGGTCCCAAGAGGATACGCC+TGG | 0.511211 | 7.1:-292007 | MS.gene025849:CDS |
| CAGGGTTCTCAGAAACTGGT+TGG | 0.511462 | 7.1:+292649 | None:intergenic |
| GTTTACACCTTCAGTGAAAG+AGG | 0.512851 | 7.1:-293672 | MS.gene025849:CDS |
| CCTTCTTGATTCTTGGAAGG+AGG | 0.514276 | 7.1:-292442 | MS.gene025849:CDS |
| CATTTGTCGAACCTCTAAGT+TGG | 0.515112 | 7.1:-293549 | MS.gene025849:CDS |
| CAGTAGCTGCCGCAACTGCA+TGG | 0.517060 | 7.1:-292977 | MS.gene025849:CDS |
| CAACCTTCTTGATTCTTGGA+AGG | 0.517741 | 7.1:-292445 | MS.gene025849:CDS |
| TGTAGAAGACATGTTGAGAA+AGG | 0.517978 | 7.1:+293187 | None:intergenic |
| TTGCTGCAGCATGGGCTGCA+GGG | 0.518760 | 7.1:+293129 | None:intergenic |
| ACCCACAAACTCAGAGGCCA+TGG | 0.520747 | 7.1:+302169 | None:intergenic |
| ATGCTCGGCCATATAGCTTG+AGG | 0.521384 | 7.1:+301080 | None:intergenic |
| CCCAAGAGGATACGCCTGGA+AGG | 0.522353 | 7.1:-292003 | MS.gene025849:CDS |
| ACGTGCACAGTGATATGTCT+TGG | 0.523923 | 7.1:+293434 | None:intergenic |
| GTGAACCAATTTGTCTAGAT+GGG | 0.530035 | 7.1:+293030 | None:intergenic |
| CAGCAAAACTTGCTGCAGCA+TGG | 0.533463 | 7.1:+293120 | None:intergenic |
| CGTGCACAGTGATATGTCTT+GGG | 0.533974 | 7.1:+293435 | None:intergenic |
| AAAAGTATTAACAGTCCTCA+AGG | 0.540476 | 7.1:-293780 | MS.gene025849:CDS |
| TCTCCTTGATCTGTCTTAGG+TGG | 0.542096 | 7.1:+292849 | None:intergenic |
| GATTCAGATGAAGAAACAGC+TGG | 0.543112 | 7.1:+292735 | None:intergenic |
| CTGATAGACCGGTCTTCTTG+TGG | 0.544065 | 7.1:-292600 | MS.gene025849:CDS |
| TGAGAAAGAATCACTTCTAG+AGG | 0.549009 | 7.1:-293949 | MS.gene025849:intron |
| GAAGATTCTACATTTGCATA+CGG | 0.549998 | 7.1:+293086 | None:intergenic |
| TTCACAGCTAGAGGTTGTGT+TGG | 0.551194 | 7.1:+292575 | None:intergenic |
| AGAGGATACGCCTGGAAGGG+GGG | 0.551215 | 7.1:-291999 | MS.gene025849:CDS |
| AGAGAAGGATGAGAAAGAAA+AGG | 0.551265 | 7.1:-292538 | MS.gene025849:CDS |
| CTAACCATGGGTCTTGGACA+AGG | 0.551976 | 7.1:-292132 | MS.gene025849:CDS |
| AAGAGGATACGCCTGGAAGG+GGG | 0.554626 | 7.1:-292000 | MS.gene025849:CDS |
| TTCACACGGTAAACAAGCAA+TGG | 0.555075 | 7.1:-293976 | MS.gene025849:CDS |
| CAGATGTTGAAGATAGATGA+TGG | 0.559885 | 7.1:-293596 | MS.gene025849:CDS |
| AGTAGAGGCCAAGGAAAGCA+GGG | 0.563052 | 7.1:-292061 | MS.gene025849:CDS |
| TATCCTCGCAAGACCAATGT+TGG | 0.566159 | 7.1:-294056 | MS.gene025849:CDS |
| TGTTTCTTCATCTGAATCAG+AGG | 0.567469 | 7.1:-292730 | MS.gene025849:CDS |
| AAGATGTTTAGTAGAGGCCA+AGG | 0.570129 | 7.1:-292070 | MS.gene025849:CDS |
| TAATGTTGGGGTACCAACAT+TGG | 0.570681 | 7.1:+294043 | None:intergenic |
| TCTACATTTCAGCCAATAGG+AGG | 0.570815 | 7.1:-293350 | MS.gene025849:CDS |
| TGCAACCAAGTTGAAGAGAC+GGG | 0.572457 | 7.1:-292027 | MS.gene025849:CDS |
| TTTACCTTGTCCAAGACCCA+TGG | 0.574964 | 7.1:+292128 | None:intergenic |
| TCCTTATTTATCAAATCATG+AGG | 0.575227 | 7.1:+292264 | None:intergenic |
| AGTAACTGATCTTGCAGAGG+AGG | 0.576051 | 7.1:+292810 | None:intergenic |
| TGTTGGAACCACAAGAAGAC+CGG | 0.580340 | 7.1:+292592 | None:intergenic |
| TAAGTTAAATACTTCATCAA+AGG | 0.580402 | 7.1:-292694 | MS.gene025849:CDS |
| GATAAATAAGGATAATCAGA+TGG | 0.582791 | 7.1:-292253 | MS.gene025849:CDS |
| AGGAGCATAAAGATGAGGAA+AGG | 0.584458 | 7.1:-293841 | MS.gene025849:CDS |
| ATCAGTCTCTTCACAGCTAG+AGG | 0.585395 | 7.1:+292566 | None:intergenic |
| AAGACATGTTGAGAAAGGAT+TGG | 0.586137 | 7.1:+293192 | None:intergenic |
| TCAAGCTATATGGCCGAGCA+TGG | 0.586429 | 7.1:-301078 | MS.gene025849:CDS |
| CAGGCAAAAGCTGTCTGGAG+TGG | 0.586706 | 7.1:+292921 | None:intergenic |
| TACATTTCAGCCAATAGGAG+GGG | 0.587380 | 7.1:-293348 | MS.gene025849:CDS |
| GTACAAAATAACAATGAGGA+GGG | 0.588065 | 7.1:-292159 | MS.gene025849:CDS |
| GAAAGGATTGGTAATCAGCA+TGG | 0.589647 | 7.1:+293204 | None:intergenic |
| TTGCAACCAAGTTGAAGAGA+CGG | 0.591475 | 7.1:-292028 | MS.gene025849:CDS |
| GGCTGCAGGGTGTTGCAGCA+AGG | 0.592386 | 7.1:+293142 | None:intergenic |
| AAACCTCCTTGAGAGCAAGC+AGG | 0.592869 | 7.1:+293053 | None:intergenic |
| TCACTGTGCACGTTGTTGAT+GGG | 0.593058 | 7.1:-293424 | MS.gene025849:CDS |
| TGCTCCACTATGTAATGTTG+GGG | 0.594962 | 7.1:+294031 | None:intergenic |
| CCCATGGCCTCTGAGTTTGT+GGG | 0.596858 | 7.1:-302170 | MS.gene025849:intron |
| AGGGCAGAAAACTGATAGAC+CGG | 0.597583 | 7.1:-292611 | MS.gene025849:CDS |
| AGGAAATGATTGATGACTAG+AGG | 0.599729 | 7.1:+293250 | None:intergenic |
| GGAGCTACAGTTGTTGATGC+AGG | 0.599804 | 7.1:+292894 | None:intergenic |
| AGAGACTGATGCGCTAGAGA+AGG | 0.599937 | 7.1:-292553 | MS.gene025849:CDS |
| GAAGATGCAATTGCAATAAG+TGG | 0.600078 | 7.1:+293996 | None:intergenic |
| TAGCTGCCGCAACTGCATGG+TGG | 0.604817 | 7.1:-292974 | MS.gene025849:CDS |
| CCTCCTTCCAAGAATCAAGA+AGG | 0.605249 | 7.1:+292442 | None:intergenic |
| GTCTGGAGTGGAGCGCACAC+AGG | 0.605716 | 7.1:+292933 | None:intergenic |
| ATGAACAAGGTGCCTCCTTG+AGG | 0.606893 | 7.1:+293765 | None:intergenic |
| AGAATGTAAAATACCTGATG+CGG | 0.606991 | 7.1:-292514 | MS.gene025849:CDS |
| TGTACAAAATAACAATGAGG+AGG | 0.608346 | 7.1:-292160 | MS.gene025849:CDS |
| GAGGCCAAGGAAAGCAGGGG+CGG | 0.609140 | 7.1:-292057 | MS.gene025849:CDS |
| GAGGAGGGATTTCTAACCAT+GGG | 0.609248 | 7.1:-292144 | MS.gene025849:CDS |
| CCCTGATTCCAACAAAATGG+AGG | 0.609942 | 7.1:-292631 | MS.gene025849:CDS |
| TTGGAAGGAGGTGTCTGAAG+AGG | 0.610275 | 7.1:-292430 | MS.gene025849:intron |
| GCTGCAATAGCTGTTACACT+AGG | 0.611198 | 7.1:+293005 | None:intergenic |
| ATGCATTTGTAATTGTGACC+AGG | 0.611387 | 7.1:-292202 | MS.gene025849:CDS |
| ATTGCAATTGCATCTTCACA+CGG | 0.615445 | 7.1:-293990 | MS.gene025849:CDS |
| CTACATTTCAGCCAATAGGA+GGG | 0.615585 | 7.1:-293349 | MS.gene025849:CDS |
| CCCACAAACTCAGAGGCCAT+GGG | 0.615882 | 7.1:+302170 | None:intergenic |
| TTATGTGCAAATGGAGGACA+AGG | 0.617284 | 7.1:+293227 | None:intergenic |
| TCTCCTGCTTGCTCTCAAGG+AGG | 0.617634 | 7.1:-293056 | MS.gene025849:CDS |
| TCATCTGAATCAGAGGAGAG+TGG | 0.620785 | 7.1:-292723 | MS.gene025849:CDS |
| GCAATAGCTGTTACACTAGG+AGG | 0.623513 | 7.1:+293008 | None:intergenic |
| TTACAAAAGATGTTTAGTAG+AGG | 0.626106 | 7.1:-292076 | MS.gene025849:CDS |
| ACATTTCAGCCAATAGGAGG+GGG | 0.626802 | 7.1:-293347 | MS.gene025849:CDS |
| AACTTAAGACTCGTCGAACA+GGG | 0.627230 | 7.1:-292107 | MS.gene025849:CDS |
| TCTGGAGAATAGAGCCCGAA+AGG | 0.627276 | 7.1:+292314 | None:intergenic |
| GGTACCCCAACATTACATAG+TGG | 0.634415 | 7.1:-294035 | MS.gene025849:CDS |
| CCTGATTCCAACAAAATGGA+GGG | 0.636366 | 7.1:-292630 | MS.gene025849:CDS |
| CAAATTCCTGCACCATAAGG+GGG | 0.636736 | 7.1:-293694 | MS.gene025849:CDS |
| GTTCAATCCGAGAAAACAGA+TGG | 0.637949 | 7.1:-293506 | MS.gene025849:CDS |
| TCACAAAACAAAGAGAACGT+TGG | 0.639437 | 7.1:-301135 | MS.gene025849:CDS |
| GTACCAACATTGGTCTTGCG+AGG | 0.646677 | 7.1:+294053 | None:intergenic |
| TGAGGAGGTGAAAAGCTTTG+GGG | 0.648977 | 7.1:+292282 | None:intergenic |
| TTATTTATCAAATCATGAGG+AGG | 0.652992 | 7.1:+292267 | None:intergenic |
| AAGTGAAAATCAAAATAACA+TGG | 0.654350 | 7.1:-293279 | MS.gene025849:CDS |
| GCATGGTTATGTGCAAATGG+AGG | 0.655038 | 7.1:+293221 | None:intergenic |
| TGAGGAGGGATTTCTAACCA+TGG | 0.655042 | 7.1:-292145 | MS.gene025849:CDS |
| ATGGTGCAGGAATTTGTCTG+TGG | 0.659918 | 7.1:+293701 | None:intergenic |
| GTAGAGGCCAAGGAAAGCAG+GGG | 0.661260 | 7.1:-292060 | MS.gene025849:CDS |
| TCTAGTAACTGATCTTGCAG+AGG | 0.667647 | 7.1:+292807 | None:intergenic |
| TTGAAGAGACGGGTCCCAAG+AGG | 0.668417 | 7.1:-292017 | MS.gene025849:CDS |
| GCTACAGTTGTTGATGCAGG+AGG | 0.672632 | 7.1:+292897 | None:intergenic |
| TGTGCAAATGGAGGACAAGG+AGG | 0.682903 | 7.1:+293230 | None:intergenic |
| AGATGAGGAAAGGCCAACGA+CGG | 0.690777 | 7.1:-293831 | MS.gene025849:CDS |
| AAACACACACAAAAGAACGA+TGG | 0.697228 | 7.1:-293572 | MS.gene025849:CDS |
| GTTTGTACAAAATAACAATG+AGG | 0.699011 | 7.1:-292163 | MS.gene025849:CDS |
| TCGGGCTCTATTCTCCAGAG+AGG | 0.699278 | 7.1:-292310 | MS.gene025849:CDS |
| AATCTCACCCACAAACTCAG+AGG | 0.700699 | 7.1:+302163 | None:intergenic |
| GCCGAAGATACAGATGAACA+AGG | 0.703230 | 7.1:+293752 | None:intergenic |
| AGTATTAACAGTCCTCAAGG+AGG | 0.725209 | 7.1:-293777 | MS.gene025849:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 291987 | 302189 | 291987 | ID=MS.gene025849 |
| chr7.1 | mRNA | 291987 | 302189 | 291987 | ID=MS.gene025849.t1;Parent=MS.gene025849 |
| chr7.1 | exon | 302171 | 302189 | 302171 | ID=MS.gene025849.t1.exon1;Parent=MS.gene025849.t1 |
| chr7.1 | CDS | 302171 | 302189 | 302171 | ID=cds.MS.gene025849.t1;Parent=MS.gene025849.t1 |
| chr7.1 | exon | 301646 | 301671 | 301646 | ID=MS.gene025849.t1.exon2;Parent=MS.gene025849.t1 |
| chr7.1 | CDS | 301646 | 301671 | 301646 | ID=cds.MS.gene025849.t1;Parent=MS.gene025849.t1 |
| chr7.1 | exon | 301065 | 301176 | 301065 | ID=MS.gene025849.t1.exon3;Parent=MS.gene025849.t1 |
| chr7.1 | CDS | 301065 | 301176 | 301065 | ID=cds.MS.gene025849.t1;Parent=MS.gene025849.t1 |
| chr7.1 | exon | 300927 | 300988 | 300927 | ID=MS.gene025849.t1.exon4;Parent=MS.gene025849.t1 |
| chr7.1 | CDS | 300927 | 300988 | 300927 | ID=cds.MS.gene025849.t1;Parent=MS.gene025849.t1 |
| chr7.1 | exon | 293950 | 294174 | 293950 | ID=MS.gene025849.t1.exon5;Parent=MS.gene025849.t1 |
| chr7.1 | CDS | 293950 | 294174 | 293950 | ID=cds.MS.gene025849.t1;Parent=MS.gene025849.t1 |
| chr7.1 | exon | 292431 | 293861 | 292431 | ID=MS.gene025849.t1.exon6;Parent=MS.gene025849.t1 |
| chr7.1 | CDS | 292431 | 293861 | 292431 | ID=cds.MS.gene025849.t1;Parent=MS.gene025849.t1 |
| chr7.1 | exon | 291987 | 292346 | 291987 | ID=MS.gene025849.t1.exon7;Parent=MS.gene025849.t1 |
| chr7.1 | CDS | 291987 | 292346 | 291987 | ID=cds.MS.gene025849.t1;Parent=MS.gene025849.t1 |
| Gene Sequence |
| Protein sequence |