AlfalfaGEDB | MS.gene02590

M. sativa cultivar XinJiangDaYe / MS.gene02590

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02590.t1	XP_003602038.1	96.9	288	7	1	1	286	1	288	2.60E-167	597.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02590.t1	Q39013	61.9	299	91	5	1	286	1	289	1.5e-99	364.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02590.t1	G7J4X6	96.9	288	7	1	1	286	1	288	1.9e-167	597.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene02590.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02590.t1	MTR_3g088110	96.875	288	7	1	1	286	1	288	0.0	585
MS.gene02590.t1	MTR_8g094580	61.000	300	86	5	1	284	1	285	9.58e-119	342
MS.gene02590.t1	MTR_3g096920	59.283	307	89	6	1	286	1	292	4.16e-113	328
MS.gene02590.t1	MTR_3g096920	52.907	344	89	7	1	286	1	329	2.86e-105	309
MS.gene02590.t1	MTR_8g094580	57.317	246	74	5	55	284	1	231	4.80e-84	252
MS.gene02590.t1	MTR_2g080010	62.189	201	52	5	6	195	14	201	8.19e-81	248
MS.gene02590.t1	MTR_2g079990	66.279	172	54	2	3	173	12	180	1.95e-78	242
MS.gene02590.t1	MTR_7g085220	62.032	187	59	3	4	178	5	191	2.96e-78	241
MS.gene02590.t1	MTR_8g059170	70.552	163	46	2	3	164	10	171	3.07e-78	241
MS.gene02590.t1	MTR_2157s0010	66.871	163	44	2	7	159	8	170	5.07e-76	233

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02590.t1	AT1G01720	70.333	300	64	8	1	286	1	289	2.41e-145	409
MS.gene02590.t1	AT1G77450	61.798	267	54	5	2	265	5	226	2.67e-109	317
MS.gene02590.t1	AT5G08790	64.751	261	55	7	1	253	1	232	2.01e-107	313
MS.gene02590.t1	AT5G63790	55.290	293	78	6	1	286	44	290	1.96e-101	299
MS.gene02590.t1	AT5G63790	55.290	293	78	6	1	286	54	300	2.81e-101	299
MS.gene02590.t1	AT3G04070	61.307	199	63	5	7	194	10	205	7.48e-78	240
MS.gene02590.t1	AT3G15500	64.571	175	58	2	3	176	10	181	8.86e-78	239
MS.gene02590.t1	AT4G27410	54.077	233	89	4	3	220	10	239	1.14e-77	238
MS.gene02590.t1	AT3G04070	57.477	214	63	5	7	194	10	221	1.56e-77	240
MS.gene02590.t1	AT1G52890	64.205	176	59	2	3	177	10	182	6.31e-77	237

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Find 96 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGTTCAAGGCCGAACC+GGG	0.545704	3.1:-71023959	MS.gene02590:CDS
AAAGCTTTCTTGATTCCAAC+CGG	0.462419	3.1:+71023877	None:intergenic
AACATTCTGAAATCGAAGAC+AGG	0.566257	3.1:-71023149	MS.gene02590:CDS
AAGCCGGAGATCGTGACACG+TGG	0.637296	3.1:-71023126	MS.gene02590:CDS
AATATCCAGACCCAGCCGCC+CGG	0.582754	3.1:+71023941	None:intergenic
AATTTCAGCGATGATCGGAA+CGG	0.679262	3.1:+71024238	None:intergenic
ACATCCTCCGCCGCAAACTA+CGG	0.532859	3.1:-71023088	MS.gene02590:CDS
ACCAATAGGTCACCCTAAAC+CGG	0.472837	3.1:-71023896	MS.gene02590:CDS
ACCGGGGCGGATAAACCAAT+AGG	0.550145	3.1:-71023910	MS.gene02590:CDS
ACCGGTTTAGGGTGACCTAT+TGG	0.422320	3.1:+71023895	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGGTCCAAATTAAAAGAC+AGG	+	chr3.1:71023530-71023549	None:intergenic	30.0%
ATTTGGACCAATCAATGATT+TGG	-	chr3.1:71023538-71023557	MS.gene02590:intron	30.0%
CTAAAGGTGATAAAACCAAT+TGG	-	chr3.1:71023344-71023363	MS.gene02590:intron	30.0%
CTCTTGATTGATATACTTTG+TGG	-	chr3.1:71023632-71023651	MS.gene02590:intron	30.0%
GTGATGTGATGTTAATACTT+AGG	+	chr3.1:71023671-71023690	None:intergenic	30.0%
TACATGAACATATCTTGCAA+TGG	+	chr3.1:71024325-71024344	None:intergenic	30.0%
TTGGTCCAAATTAAAAGACA+GGG	+	chr3.1:71023529-71023548	None:intergenic	30.0%
TTTATAGGTATGGCTTCTTA+TGG	-	chr3.1:71023148-71023167	MS.gene02590:CDS	30.0%
AAAGCTTTCTTGATTCCAAC+CGG	+	chr3.1:71023301-71023320	None:intergenic	35.0%
AATGATCCATGTGATTTACC+TGG	+	chr3.1:71022993-71023012	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	71022834	71024363	71022834	ID=MS.gene02590
chr3.1	mRNA	71022834	71024363	71022834	ID=MS.gene02590.t1;Parent=MS.gene02590
chr3.1	exon	71024204	71024363	71024204	ID=MS.gene02590.t1.exon1;Parent=MS.gene02590.t1
chr3.1	CDS	71024204	71024363	71024204	ID=cds.MS.gene02590.t1;Parent=MS.gene02590.t1
chr3.1	exon	71023768	71024042	71023768	ID=MS.gene02590.t1.exon2;Parent=MS.gene02590.t1
chr3.1	CDS	71023768	71024042	71023768	ID=cds.MS.gene02590.t1;Parent=MS.gene02590.t1
chr3.1	exon	71022834	71023259	71022834	ID=MS.gene02590.t1.exon3;Parent=MS.gene02590.t1
chr3.1	CDS	71022834	71023259	71022834	ID=cds.MS.gene02590.t1;Parent=MS.gene02590.t1

Gene Sequence

>MS.gene02590

ATGGCATCCGAGCTTCAATTACCACCGGGCTTCAGATTCCATCCAACGGATGAGGAGCTCGTGATGCACTATCTCTGCCGCAAATGCACGTCGCAGCCTATCGCCGTTCCGATCATCGCTGAAATTGATCTATATAAATATGATCCTTGGGACCTCCCAGGTAAATCACATGGATCATTGTAATTACTTTTTTGTAGCTTGTAAATTTTATTTTGACATATGTACAGTGATATCAAACAAAAGCTTGATCTTTTTGTATAACTATTGTATTTTCAATTAAATATAAAATTTTAATTTTATTGATATTATGTTATTTTATAGGTATGGCTTCTTATGGAGAAAAGGAATGGTACTTTTTCTCGCCACGAGACAGAAAGTACCCAAACGGTTCAAGGCCGAACCGGGCGGCTGGGTCTGGATATTGGAAGGCAACCGGGGCGGATAAACCAATAGGTCACCCTAAACCGGTTGGAATCAAGAAAGCTTTGGTGTTTTACGCGGGTAAAGCACCTAAAGGTGATAAAACCAATTGGATCATGCACGAGTATCGTTTGGCTGATGTAGATCGCACCATTCGCAAAAAGAACAGCTTAAGGGTATAAATAAATATTCGCATTTACCCTTCTAATTTTTAGAATTAAGATCAAAGTTTTGTGATATTTGTTGAAAACTACCATTTTGGCCCTTGGGTCCCCTGTCTTTTAATTTGGACCAATCAATGATTTGGTTGACGCAAATGTGGTTACACTTTTTTATTATGTGTGATAACTACACCAAGGAACCTTCACTAGTTGATAACTCTTGATTGATATACTTTGTGGCTGATTTTCGGATCCTAAGTATTAACATCACATCACATTATTTCCAAAATGAAGAATAGTAACATCACATTAAATCAGACAATTAATGAGATAATATTGAAAGTCATCTGCCAACCACTTATTATTATTTTCCATTTATAGAATTTATTTATTTCTACTTATCTGTTTGAAGTTTGACTTGAATTTTATTAGGAAATAGTATTTAGTCTTTTATTATGTTAAATATTTGGATTTATTTTCCTTAGAAAAACATGAAATTGATTAAATGGTTCTGATTTTACAGTTGGATGATTGGGTGCTTTGCCGTATTTACAACAAGAAGGGCACAATTGAGAAACAACCAAGCAACGGTGTTGTTAGCCGAAAAACAGAACATTCTGAAATCGAAGACAGGAAGCCGGAGATCGTGACACGTGGAGGTGGTCTTCCGCCACATCCTCCGCCGCAAACTACGGCTGGAATTAGGGATTACATGTACTTTGACACATCAGATTCGATTCCTAAGCTGCACACCGATTCGAGCTGTTCGGAGCACGTGGTATCACCGGAGTTTGCAAGTGAGGTGCAGAGTGAGCCTAAGTGGAATGAATGGGAGAAGAACCTTGAATTTCCTTATAATTACGTGGATGCCACCCTGAACACTGGTTTTGGCTTCCAAAATACTAATCCATTGCAAGATATGTTCATGTACTTGCCCAAAACCTTTTGA

Protein sequence

>MS.gene02590.t1

MASELQLPPGFRFHPTDEELVMHYLCRKCTSQPIAVPIIAEIDLYKYDPWDLPGMASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRTIRKKNSLRLDDWVLCRIYNKKGTIEKQPSNGVVSRKTEHSEIEDRKPEIVTRGGGLPPHPPPQTTAGIRDYMYFDTSDSIPKLHTDSSCSEHVVSPEFASEVQSEPKWNEWEKNLEFPYNYVDATLNTGFGFQNTNPLQDMFMYLPKTF