AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025929

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025929.t1 MTR_7g117705 68.051 313 75 4 1 291 1 310 3.18e-136 393
MS.gene025929.t1 MTR_1g013170 77.220 259 59 0 1 259 1 259 6.50e-129 376
MS.gene025929.t1 MTR_1g013180 64.000 325 83 3 1 291 152 476 3.83e-123 367
MS.gene025929.t1 MTR_3g106220 54.921 315 112 4 3 288 6 319 5.93e-100 306
MS.gene025929.t1 MTR_2g450070 52.174 276 117 5 3 266 16 288 4.32e-82 260
MS.gene025929.t1 MTR_2g450070 52.174 276 117 5 3 266 16 288 7.15e-82 260
MS.gene025929.t1 MTR_2g034960 47.222 288 142 4 1 286 25 304 5.67e-76 243
MS.gene025929.t1 MTR_4g131580 53.252 246 112 2 5 250 17 259 1.08e-75 242
MS.gene025929.t1 MTR_1g032570 48.699 269 121 4 4 262 10 271 1.89e-75 242
MS.gene025929.t1 MTR_4g121020 49.421 259 125 2 2 258 28 282 5.67e-75 242
MS.gene025929.t1 MTR_4g121020 49.421 259 125 2 2 258 28 282 5.90e-75 242
MS.gene025929.t1 MTR_4g131600 51.417 247 115 2 1 247 16 257 3.07e-73 235
MS.gene025929.t1 MTR_4g131570 50.988 253 114 3 3 250 15 262 4.08e-72 233
MS.gene025929.t1 MTR_3g086100 48.302 265 120 3 4 255 12 272 3.30e-71 229
MS.gene025929.t1 MTR_8g079940 49.049 263 121 3 3 255 23 282 3.81e-70 226
MS.gene025929.t1 MTR_1g013160 78.378 148 32 0 67 214 1 148 1.25e-69 213
MS.gene025929.t1 MTR_3g102590 46.992 266 85 3 2 263 5 218 1.07e-64 203
MS.gene025929.t1 MTR_3g102590 48.333 240 71 2 2 240 5 192 3.17e-60 190
MS.gene025929.t1 MTR_4g021760 39.431 246 121 5 5 250 11 228 4.96e-51 170
MS.gene025929.t1 MTR_1g032570 49.741 193 82 3 64 247 1 187 2.05e-50 174
MS.gene025929.t1 MTR_4g021790 39.357 249 123 5 2 250 7 227 8.29e-50 166
MS.gene025929.t1 MTR_3g102600 63.846 130 47 0 1 130 4 133 1.19e-47 158
MS.gene025929.t1 MTR_3g102600 63.846 130 47 0 1 130 4 133 2.08e-47 158
MS.gene025929.t1 MTR_4g021855 35.662 272 146 5 2 273 7 249 2.56e-47 160
MS.gene025929.t1 MTR_3g086100 46.829 205 92 3 64 255 1 201 4.19e-47 165
MS.gene025929.t1 MTR_4g021845 37.238 239 122 4 2 240 7 217 5.67e-47 157
MS.gene025929.t1 MTR_6g045327 35.510 245 128 5 4 247 13 228 3.85e-39 141
MS.gene025929.t1 MTR_0450s0040 35.000 240 135 3 9 248 8 226 1.01e-38 139
MS.gene025929.t1 MTR_7g026400 36.697 218 118 3 32 247 14 213 4.49e-35 133
MS.gene025929.t1 MTR_4g121020 41.243 177 98 2 84 258 6 178 9.02e-33 127
MS.gene025929.t1 MTR_3g102600 65.882 85 29 0 47 131 1 85 2.16e-32 117
MS.gene025929.t1 MTR_3g102600 65.882 85 29 0 47 131 1 85 3.62e-32 117
MS.gene025929.t1 MTR_5g055260 32.258 248 113 6 2 249 7 199 1.37e-31 118
MS.gene025929.t1 MTR_8g105600 33.871 248 144 4 5 246 9 242 6.58e-30 119
MS.gene025929.t1 MTR_8g032710 30.315 254 157 7 8 243 20 271 8.94e-28 112
MS.gene025929.t1 MTR_6g016850 36.434 129 79 2 1 127 5 132 1.41e-21 89.7
MS.gene025929.t1 MTR_4g023980 30.675 163 86 3 52 214 36 171 4.99e-21 88.2
MS.gene025929.t1 MTR_3g092780 27.749 191 115 3 9 177 56 245 4.06e-20 90.5
MS.gene025929.t1 MTR_3g092780 27.749 191 115 3 9 177 56 245 4.26e-20 90.5
MS.gene025929.t1 MTR_8g093040 35.484 124 80 0 4 127 13 136 1.24e-19 86.7
MS.gene025929.t1 MTR_8g024260 31.214 173 105 3 6 164 33 205 1.75e-19 89.0
MS.gene025929.t1 MTR_3g037390 29.891 184 118 2 6 178 21 204 2.10e-19 88.6
MS.gene025929.t1 MTR_3g092780 31.169 154 98 3 9 155 56 208 3.62e-19 87.8
MS.gene025929.t1 MTR_3g092780 31.169 154 98 3 9 155 56 208 3.87e-19 87.8
MS.gene025929.t1 MTR_1g067110 36.066 122 75 2 9 127 85 206 3.89e-18 84.7
MS.gene025929.t1 MTR_1g067110 36.066 122 75 2 9 127 85 206 4.04e-18 84.7
MS.gene025929.t1 MTR_4g108880 32.283 127 83 1 6 129 30 156 3.21e-17 82.0
MS.gene025929.t1 MTR_4g061360 35.246 122 76 1 9 127 89 210 3.50e-17 82.0
MS.gene025929.t1 MTR_7g118260 33.846 130 77 2 9 132 14 140 3.22e-16 79.0
MS.gene025929.t1 MTR_7g118260 33.594 128 76 2 9 130 14 138 1.00e-15 77.4
MS.gene025929.t1 MTR_4g064730 46.591 88 45 1 162 247 100 187 5.09e-15 74.3
MS.gene025929.t1 MTR_7g115530 64.815 54 18 1 191 243 218 271 1.12e-14 73.2
MS.gene025929.t1 MTR_7g115530 64.815 54 18 1 191 243 218 271 1.58e-14 73.2
MS.gene025929.t1 MTR_7g115530 64.815 54 18 1 191 243 218 271 1.62e-14 73.6
MS.gene025929.t1 MTR_7g115530 64.815 54 18 1 191 243 218 271 2.55e-14 72.8
MS.gene025929.t1 MTR_1g080330 58.621 58 23 1 187 243 171 228 3.79e-14 71.6
MS.gene025929.t1 MTR_1g080330 58.621 58 23 1 187 243 171 228 4.71e-14 72.0
MS.gene025929.t1 MTR_2g027800 47.436 78 39 2 187 262 35 112 8.33e-14 70.9
MS.gene025929.t1 MTR_7g089010 53.448 58 27 0 190 247 90 147 2.30e-13 69.3
MS.gene025929.t1 MTR_2g027800 51.562 64 30 1 187 249 35 98 2.89e-13 69.3
MS.gene025929.t1 MTR_4g106590 32.824 131 75 2 9 126 26 156 5.52e-13 67.0
MS.gene025929.t1 MTR_7g115530 63.462 52 18 1 191 241 218 269 8.75e-13 67.4
MS.gene025929.t1 MTR_7g098250 55.172 58 25 1 187 243 258 315 9.87e-13 68.6
MS.gene025929.t1 MTR_1g053835 51.613 62 29 1 184 244 251 312 1.48e-12 67.8
MS.gene025929.t1 MTR_1g090670 52.542 59 27 1 187 244 40 98 2.42e-12 66.2
MS.gene025929.t1 MTR_7g115530 62.745 51 18 1 191 240 218 268 4.54e-12 65.5
MS.gene025929.t1 MTR_5g027440 42.529 87 39 3 191 266 25 111 6.71e-12 65.1
MS.gene025929.t1 MTR_7g093030 57.407 54 22 1 191 243 212 265 1.05e-11 64.7
MS.gene025929.t1 MTR_7g093030 57.407 54 22 1 191 243 212 265 1.09e-11 65.1
MS.gene025929.t1 MTR_2g023580 54.545 55 24 1 190 243 54 108 1.61e-11 63.2
MS.gene025929.t1 MTR_6g032990 50.909 55 26 1 191 244 42 96 1.71e-11 64.7
MS.gene025929.t1 MTR_8g086410 54.386 57 25 1 190 245 110 166 1.80e-11 64.7
MS.gene025929.t1 MTR_8g086410 54.386 57 25 1 190 245 108 164 1.83e-11 64.7
MS.gene025929.t1 MTR_8g038620 29.286 140 79 3 9 128 9 148 1.88e-11 62.0
MS.gene025929.t1 MTR_7g069660 52.632 57 26 1 190 245 70 126 2.32e-11 63.9
MS.gene025929.t1 MTR_4g078810 36.145 83 47 1 186 262 153 235 2.68e-11 63.9
MS.gene025929.t1 MTR_4g081710 47.273 55 28 1 191 244 17 71 2.80e-11 63.5
MS.gene025929.t1 MTR_2g086450 50.909 55 26 1 191 244 45 99 3.03e-11 63.9
MS.gene025929.t1 MTR_5g014040 50.909 55 27 0 190 244 310 364 3.74e-11 63.9
MS.gene025929.t1 MTR_5g014040 32.331 133 84 3 4 134 13 141 4.62e-11 63.5
MS.gene025929.t1 MTR_4g098870 50.909 55 27 0 190 244 329 383 4.14e-11 63.5
MS.gene025929.t1 MTR_4g098870 50.909 55 27 0 190 244 348 402 4.16e-11 63.5
MS.gene025929.t1 MTR_4g098870 50.909 55 27 0 190 244 309 363 4.22e-11 63.5
MS.gene025929.t1 MTR_5g014040 32.331 133 84 3 4 134 13 141 4.56e-11 63.5
MS.gene025929.t1 MTR_4g098870 50.909 55 27 0 190 244 309 363 4.73e-11 63.5
MS.gene025929.t1 MTR_4g098870 50.909 55 27 0 190 244 329 383 4.77e-11 63.5
MS.gene025929.t1 MTR_8g086410 43.210 81 45 1 190 269 110 190 5.16e-11 63.2
MS.gene025929.t1 MTR_2g090675 34.884 86 46 1 186 271 156 231 6.48e-11 62.8
MS.gene025929.t1 MTR_5g041350 47.273 55 28 1 191 244 15 69 6.95e-11 62.4
MS.gene025929.t1 MTR_1g053800 50.820 61 29 1 187 246 173 233 8.57e-11 62.0
MS.gene025929.t1 MTR_7g088070 38.298 94 51 3 191 280 50 140 9.19e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025929.t1 AT4G31920 58.594 256 90 2 3 258 11 250 3.31e-90 278
MS.gene025929.t1 AT2G25180 57.088 261 106 3 3 262 11 266 2.85e-88 275
MS.gene025929.t1 AT3G16857 46.831 284 111 5 5 259 33 305 4.60e-74 239
MS.gene025929.t1 AT3G16857 46.831 284 111 5 5 259 33 305 9.01e-74 239
MS.gene025929.t1 AT5G58080 48.746 279 119 4 3 272 12 275 4.93e-70 228
MS.gene025929.t1 AT1G67710 48.327 269 126 4 7 268 9 271 4.16e-69 223
MS.gene025929.t1 AT2G01760 48.031 254 125 3 1 247 3 256 7.74e-69 218
MS.gene025929.t1 AT2G01760 42.662 293 132 5 1 258 3 294 8.80e-63 204
MS.gene025929.t1 AT3G16857 45.935 246 93 5 43 259 1 235 4.03e-59 199
MS.gene025929.t1 AT5G49240 37.815 238 143 4 5 240 38 272 3.28e-45 155
MS.gene025929.t1 AT1G67710 47.317 205 95 4 64 261 1 199 1.18e-44 157
MS.gene025929.t1 AT3G62670 37.984 258 129 9 24 267 54 294 1.30e-43 154
MS.gene025929.t1 AT2G01760 46.073 191 96 3 64 247 1 191 8.41e-43 149
MS.gene025929.t1 AT1G49190 29.487 312 171 6 4 286 29 320 1.14e-37 138
MS.gene025929.t1 AT1G67710 41.622 185 95 4 84 261 12 190 3.50e-30 118
MS.gene025929.t1 AT5G07210 28.625 269 156 6 9 247 16 278 1.27e-29 118
MS.gene025929.t1 AT2G27070 30.108 279 146 7 7 247 14 281 5.66e-29 116
MS.gene025929.t1 AT5G07210 27.798 277 156 7 9 247 16 286 3.49e-27 111
MS.gene025929.t1 AT1G49190 28.448 232 143 6 4 212 29 260 1.61e-22 97.8
MS.gene025929.t1 AT2G46790 37.398 123 72 2 9 127 37 158 1.08e-21 94.7
MS.gene025929.t1 AT2G46790 37.398 123 72 2 9 127 37 158 1.13e-21 94.7
MS.gene025929.t1 AT5G24470 34.109 129 80 2 6 130 47 174 2.36e-20 91.3
MS.gene025929.t1 AT5G61380 34.646 127 80 1 6 129 16 142 1.72e-19 89.0
MS.gene025929.t1 AT5G60100 37.705 122 73 1 9 127 64 185 9.18e-19 85.9
MS.gene025929.t1 AT5G60100 37.705 122 73 1 9 127 64 185 9.18e-19 85.9
MS.gene025929.t1 AT5G60100 37.705 122 73 1 9 127 64 185 9.18e-19 85.9
MS.gene025929.t1 AT5G60100 37.705 122 73 1 9 127 64 185 1.23e-18 86.3
MS.gene025929.t1 AT5G60100 37.705 122 73 1 9 127 64 185 1.23e-18 86.3
MS.gene025929.t1 AT5G60100 37.705 122 73 1 9 127 64 185 1.23e-18 86.3
MS.gene025929.t1 AT5G60100 37.705 122 73 1 9 127 64 185 2.04e-18 85.5
MS.gene025929.t1 AT5G02810 35.246 122 76 1 9 127 78 199 1.08e-17 83.6
MS.gene025929.t1 AT5G59570 47.436 78 41 0 170 247 120 197 1.67e-16 78.6
MS.gene025929.t1 AT5G59570 47.436 78 41 0 170 247 120 197 1.67e-16 78.6
MS.gene025929.t1 AT3G46640 33.918 171 88 4 101 247 31 200 7.95e-15 73.9
MS.gene025929.t1 AT3G46640 33.918 171 88 4 101 247 31 200 8.77e-15 73.9
MS.gene025929.t1 AT3G46640 33.918 171 88 4 101 247 31 200 8.77e-15 73.9
MS.gene025929.t1 AT2G40970 53.448 58 27 0 190 247 104 161 4.15e-14 70.9
MS.gene025929.t1 AT3G10760 53.448 58 27 0 190 247 104 161 1.15e-13 70.9
MS.gene025929.t1 AT5G44190 57.407 54 23 0 190 243 146 199 1.17e-13 70.9
MS.gene025929.t1 AT5G44190 57.407 54 23 0 190 243 146 199 1.48e-13 70.5
MS.gene025929.t1 AT5G05090 53.448 58 27 0 190 247 80 137 1.48e-13 69.7
MS.gene025929.t1 AT3G13040 53.846 65 29 1 181 244 231 295 9.27e-13 68.6
MS.gene025929.t1 AT3G13040 53.846 65 29 1 181 244 231 295 9.27e-13 68.6
MS.gene025929.t1 AT3G13040 53.846 65 29 1 181 244 231 295 9.27e-13 68.6
MS.gene025929.t1 AT3G24120 41.379 87 48 2 187 270 37 123 2.39e-12 66.6
MS.gene025929.t1 AT3G24120 41.379 87 48 2 187 270 37 123 2.69e-12 66.2
MS.gene025929.t1 AT5G45580 49.254 67 33 1 179 244 11 77 3.34e-12 65.9
MS.gene025929.t1 AT5G45580 54.545 55 24 1 191 244 7 61 5.00e-12 65.1
MS.gene025929.t1 AT1G69580 52.727 55 25 1 191 244 34 88 6.30e-12 65.5
MS.gene025929.t1 AT1G69580 52.727 55 25 1 191 244 34 88 6.39e-12 65.5
MS.gene025929.t1 AT3G57040 27.684 177 102 4 9 159 9 185 6.95e-12 64.3
MS.gene025929.t1 AT3G57040 27.684 177 102 4 9 159 9 185 6.95e-12 64.3
MS.gene025929.t1 AT2G01060 42.000 100 49 4 182 272 4 103 9.72e-12 64.7
MS.gene025929.t1 AT3G04030 50.909 55 26 1 191 244 45 99 1.46e-11 64.7
MS.gene025929.t1 AT3G04030 50.909 55 26 1 191 244 45 99 1.64e-11 64.7
MS.gene025929.t1 AT4G13640 40.230 87 49 2 187 270 33 119 2.07e-11 63.5
MS.gene025929.t1 AT4G13640 40.230 87 49 2 187 270 33 119 2.14e-11 63.5
MS.gene025929.t1 AT3G12730 45.070 71 37 2 187 255 19 89 2.16e-11 63.2
MS.gene025929.t1 AT3G04030 48.148 54 28 0 191 244 45 98 3.72e-11 63.5
MS.gene025929.t1 AT2G20570 40.426 94 47 2 150 243 121 205 3.77e-11 63.5
MS.gene025929.t1 AT5G18240 50.909 55 26 1 191 244 45 99 4.85e-11 63.2
MS.gene025929.t1 AT5G18240 50.909 55 26 1 191 244 45 99 4.85e-11 63.2
MS.gene025929.t1 AT5G18240 50.909 55 26 1 191 244 45 99 5.83e-11 63.2
MS.gene025929.t1 AT5G18240 50.909 55 26 1 191 244 45 99 5.86e-11 63.2
MS.gene025929.t1 AT5G18240 50.909 55 26 1 191 244 45 99 5.86e-11 63.2
MS.gene025929.t1 AT5G06800 49.180 61 30 1 185 244 186 246 9.88e-11 61.6

Find 47 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAACTTGTCTCAAGATTT+TGG 0.120883 7.1:+1089353 MS.gene025929:CDS
CTTGTCGCGGTTAACAAATT+TGG 0.304801 7.1:+1090531 MS.gene025929:CDS
CCATTTCCACTATCAGAATT+AGG 0.317534 7.1:-1090333 None:intergenic
TGAAAGAGGTGAAGATGATT+TGG 0.332494 7.1:+1090259 MS.gene025929:CDS
ATGAATGATGAGTTTCGAAT+TGG 0.346923 7.1:+1089303 MS.gene025929:CDS
TTCACCTCTTTCAATTGAAC+AGG 0.352913 7.1:-1090249 None:intergenic
TGAGCTTGTTGGACTTGAAA+TGG 0.372169 7.1:+1090051 MS.gene025929:CDS
TTTAAGCTTCTTGAGCTTGT+TGG 0.375182 7.1:+1090040 MS.gene025929:CDS
CAACGAAATCGAGGCTTCTT+CGG 0.398280 7.1:-1090483 None:intergenic
CCTAATTCTGATAGTGGAAA+TGG 0.401332 7.1:+1090333 MS.gene025929:CDS
CGAGGCTTCTTCGGCGCTGT+TGG 0.409792 7.1:-1090474 None:intergenic
CCTCCTAGTGTCAATATACA+TGG 0.410772 7.1:+1091288 MS.gene025929:CDS
ATTGCTTTCATAACCAGCTT+AGG 0.420417 7.1:-1090195 None:intergenic
AGTTGAAAAGTAGTAGTTAT+GGG 0.440897 7.1:+1091199 MS.gene025929:CDS
AAACTTGTGGTGTAAGTCAT+TGG 0.441523 7.1:-1090508 None:intergenic
TTCAGTGCTATTCGTGCACT+TGG 0.445352 7.1:-1089947 None:intergenic
TATGAACATTACTCATTACT+AGG 0.460796 7.1:-1090000 None:intergenic
AGCTTAAATCCATCCATGTC+TGG 0.471845 7.1:-1090025 None:intergenic
AAGTTGAAAAGTAGTAGTTA+TGG 0.482179 7.1:+1091198 MS.gene025929:CDS
TGAAAATGATGATCCTAAGC+TGG 0.496842 7.1:+1090182 MS.gene025929:CDS
ACATGTGGCCAGCCATCTCC+AGG 0.523004 7.1:+1090868 MS.gene025929:CDS
TTGCATAACTTACTTATGAC+AGG 0.526242 7.1:-1090079 None:intergenic
TAAGAATGAAGATGATGTTG+AGG 0.533063 7.1:+1090419 MS.gene025929:CDS
CTCCACGAAGAAAACTTACA+AGG 0.534436 7.1:-1091337 None:intergenic
GATGTGCCTAATTCTGATAG+TGG 0.537306 7.1:+1090327 MS.gene025929:CDS
CGAGCTAATATGGTGGGTAG+TGG 0.549185 7.1:+1091231 MS.gene025929:CDS
CGAAGAAGCCTCGATTTCGT+TGG 0.556982 7.1:+1090484 MS.gene025929:CDS
TATTCGTGCACTTGGAGCAG+TGG 0.566879 7.1:-1089939 None:intergenic
GTTCATATGCCAGACATGGA+TGG 0.584384 7.1:+1090016 MS.gene025929:CDS
AACCATCGAGCTAATATGGT+GGG 0.586842 7.1:+1091225 MS.gene025929:CDS
TAGTGTCAATATACATGGGT+TGG 0.589409 7.1:+1091293 MS.gene025929:CDS
GAAACCTGTTCAATTGAAAG+AGG 0.592307 7.1:+1090245 MS.gene025929:CDS
GTTATGAAAGCAATTGATCT+CGG 0.596446 7.1:+1090204 MS.gene025929:CDS
GAGTATGATCATGAAAATGA+TGG 0.597211 7.1:+1090450 MS.gene025929:CDS
TACCCACCATATTAGCTCGA+TGG 0.605158 7.1:-1091227 None:intergenic
AAATCTTACAAAGGAACATG+TGG 0.625593 7.1:+1090853 MS.gene025929:CDS
ATAACTTACTTATGACAGGT+AGG 0.629417 7.1:-1090075 None:intergenic
CTCCTAGTGTCAATATACAT+GGG 0.630450 7.1:+1091289 MS.gene025929:CDS
CCATGTATATTGACACTAGG+AGG 0.632916 7.1:-1091288 None:intergenic
GAATGTTGAAAATCTTACAA+AGG 0.637383 7.1:+1090844 MS.gene025929:CDS
ACACCACAAGTTTCTTGTCG+CGG 0.645407 7.1:+1090518 MS.gene025929:CDS
CTCGAAAGGTGTCAATACCA+TGG 0.650196 7.1:+1089384 MS.gene025929:CDS
TCATTGGACCAACGAAATCG+AGG 0.660616 7.1:-1090492 None:intergenic
AAACCATCGAGCTAATATGG+TGG 0.662624 7.1:+1091224 MS.gene025929:CDS
TAATGTTCATATGCCAGACA+TGG 0.666265 7.1:+1090012 MS.gene025929:CDS
TAACCGCGACAAGAAACTTG+TGG 0.669528 7.1:-1090521 None:intergenic
AACCCATGTATATTGACACT+AGG 0.674841 7.1:-1091291 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAATATCATTATGAA+AGG - chr7.1:1089895-1089914 None:intergenic 10.0%
!! ATAATATTAATATCATCATT+GGG - chr7.1:1090677-1090696 None:intergenic 10.0%
!! CATAATATTAATATCATCAT+TGG - chr7.1:1090678-1090697 None:intergenic 15.0%
!!! TTTACAAACACTTTAATTTA+GGG + chr7.1:1091130-1091149 MS.gene025929:intron 15.0%
!!! TTTTACAAACACTTTAATTT+AGG + chr7.1:1091129-1091148 MS.gene025929:intron 15.0%
!! ATCATTAAATTGTAATCACA+AGG + chr7.1:1089470-1089489 MS.gene025929:intron 20.0%
!! TCATTAAATTGTAATCACAA+GGG + chr7.1:1089471-1089490 MS.gene025929:intron 20.0%
!! TTAATTTAGGGAAATTTACT+TGG + chr7.1:1091142-1091161 MS.gene025929:intron 20.0%
!!! TAATATAATTGATTCGTACA+AGG - chr7.1:1089650-1089669 None:intergenic 20.0%
!!! TGTGAACTTATGTTATTTTT+TGG + chr7.1:1089798-1089817 MS.gene025929:intron 20.0%
! AAGAGATAAAGAAAAATACC+TGG - chr7.1:1090889-1090908 None:intergenic 25.0%
! AAGTTGAAAAGTAGTAGTTA+TGG + chr7.1:1091198-1091217 MS.gene025929:CDS 25.0%
! AATTAGAACGATAACGTTAA+CGG + chr7.1:1089583-1089602 MS.gene025929:intron 25.0%
! AGCAATAGATAAAAGATTTG+AGG - chr7.1:1090606-1090625 None:intergenic 25.0%
! AGTTGAAAAGTAGTAGTTAT+GGG + chr7.1:1091199-1091218 MS.gene025929:CDS 25.0%
! ATGTATCAGTAACAAAAGAT+TGG - chr7.1:1090109-1090128 None:intergenic 25.0%
! GAATGTTGAAAATCTTACAA+AGG + chr7.1:1090844-1090863 MS.gene025929:CDS 25.0%
! GTGTTTGTAAAATGTAAACT+AGG - chr7.1:1091121-1091140 None:intergenic 25.0%
! TATGAACATTACTCATTACT+AGG - chr7.1:1090003-1090022 None:intergenic 25.0%
! TTGTAAAATGTAAACTAGGT+AGG - chr7.1:1091117-1091136 None:intergenic 25.0%
! TTTATCAAAGATGTTTGAGT+AGG + chr7.1:1090641-1090660 MS.gene025929:intron 25.0%
!! AATCTTTGAGAGAATTTGAT+CGG - chr7.1:1089727-1089746 None:intergenic 25.0%
!! ATCAAGTTAAGAATCTTTTG+TGG - chr7.1:1090824-1090843 None:intergenic 25.0%
!! TTATCCTTTCTTTTTCTAGA+TGG - chr7.1:1090402-1090421 None:intergenic 25.0%
!! TTTGATTCTTTAGATCCTTT+TGG + chr7.1:1089548-1089567 MS.gene025929:intron 25.0%
AAAGCCATCTAGAAAAAGAA+AGG + chr7.1:1090395-1090414 MS.gene025929:CDS 30.0%
AAATCTTACAAAGGAACATG+TGG + chr7.1:1090853-1090872 MS.gene025929:CDS 30.0%
ATAACTTACTTATGACAGGT+AGG - chr7.1:1090078-1090097 None:intergenic 30.0%
ATCGAATGAATCCAACAATT+TGG - chr7.1:1089845-1089864 None:intergenic 30.0%
ATGAATGATGAGTTTCGAAT+TGG + chr7.1:1089303-1089322 MS.gene025929:CDS 30.0%
GAGTATGATCATGAAAATGA+TGG + chr7.1:1090450-1090469 MS.gene025929:CDS 30.0%
GATCAAATTCTCTCAAAGAT+TGG + chr7.1:1089726-1089745 MS.gene025929:intron 30.0%
GTTATGAAAGCAATTGATCT+CGG + chr7.1:1090204-1090223 MS.gene025929:CDS 30.0%
TAAAGAAAAATACCTGGAGA+TGG - chr7.1:1090883-1090902 None:intergenic 30.0%
TAAATTGTAATCACAAGGGA+CGG + chr7.1:1089475-1089494 MS.gene025929:intron 30.0%
TAAGAATGAAGATGATGTTG+AGG + chr7.1:1090419-1090438 MS.gene025929:CDS 30.0%
TTGCATAACTTACTTATGAC+AGG - chr7.1:1090082-1090101 None:intergenic 30.0%
TTTAACTGCATCCAAATTGT+TGG + chr7.1:1089831-1089850 MS.gene025929:intron 30.0%
! AAAGAAAAAGAAGCATACCA+TGG - chr7.1:1089404-1089423 None:intergenic 30.0%
! CACTTCTAATCTAAGGTTAT+CGG - chr7.1:1089506-1089525 None:intergenic 30.0%
! CATTTTCTTCGATACTGTTT+AGG + chr7.1:1089681-1089700 MS.gene025929:intron 30.0%
!!! AGTTGTTATTTTGTTTGCAG+AGG + chr7.1:1090793-1090812 MS.gene025929:intron 30.0%
AAACTTGTGGTGTAAGTCAT+TGG - chr7.1:1090511-1090530 None:intergenic 35.0%
AACCCATGTATATTGACACT+AGG - chr7.1:1091294-1091313 None:intergenic 35.0%
AGACAATCATGACAAAGACA+CGG + chr7.1:1090933-1090952 MS.gene025929:intron 35.0%
ATTACAATGCCTTAGCCAAA+AGG - chr7.1:1089566-1089585 None:intergenic 35.0%
ATTGCTTTCATAACCAGCTT+AGG - chr7.1:1090198-1090217 None:intergenic 35.0%
CCATTTCCACTATCAGAATT+AGG - chr7.1:1090336-1090355 None:intergenic 35.0%
CTCCTAGTGTCAATATACAT+GGG + chr7.1:1091289-1091308 MS.gene025929:CDS 35.0%
GAAAAACCATCGAGCTAATA+TGG + chr7.1:1091221-1091240 MS.gene025929:CDS 35.0%
GAAACCTGTTCAATTGAAAG+AGG + chr7.1:1090245-1090264 MS.gene025929:CDS 35.0%
TAATGTTCATATGCCAGACA+TGG + chr7.1:1090012-1090031 MS.gene025929:CDS 35.0%
TAGTGTCAATATACATGGGT+TGG + chr7.1:1091293-1091312 MS.gene025929:CDS 35.0%
TGAAAATGATGATCCTAAGC+TGG + chr7.1:1090182-1090201 MS.gene025929:CDS 35.0%
TGAAAGAGGTGAAGATGATT+TGG + chr7.1:1090259-1090278 MS.gene025929:CDS 35.0%
TTCACCTCTTTCAATTGAAC+AGG - chr7.1:1090252-1090271 None:intergenic 35.0%
TTTAAGCTTCTTGAGCTTGT+TGG + chr7.1:1090040-1090059 MS.gene025929:CDS 35.0%
! CAGAACTTGTCTCAAGATTT+TGG + chr7.1:1089353-1089372 MS.gene025929:CDS 35.0%
! TTTTGCACATTGAAAGCAGA+GGG - chr7.1:1090575-1090594 None:intergenic 35.0%
! TTTTTGCACATTGAAAGCAG+AGG - chr7.1:1090576-1090595 None:intergenic 35.0%
!! CCTAATTCTGATAGTGGAAA+TGG + chr7.1:1090333-1090352 MS.gene025929:CDS 35.0%
!! TCTTTAGATCCTTTTGGCTA+AGG + chr7.1:1089554-1089573 MS.gene025929:intron 35.0%
!! TTATTTTGTTTGCAGAGGCT+AGG + chr7.1:1090798-1090817 MS.gene025929:intron 35.0%
AAACCATCGAGCTAATATGG+TGG + chr7.1:1091224-1091243 MS.gene025929:CDS 40.0%
AACCATCGAGCTAATATGGT+GGG + chr7.1:1091225-1091244 MS.gene025929:CDS 40.0%
AGCTTAAATCCATCCATGTC+TGG - chr7.1:1090028-1090047 None:intergenic 40.0%
CCATGTATATTGACACTAGG+AGG - chr7.1:1091291-1091310 None:intergenic 40.0%
CCTCCTAGTGTCAATATACA+TGG + chr7.1:1091288-1091307 MS.gene025929:CDS 40.0%
CTTGTCGCGGTTAACAAATT+TGG + chr7.1:1090531-1090550 MS.gene025929:CDS 40.0%
GATGTGCCTAATTCTGATAG+TGG + chr7.1:1090327-1090346 MS.gene025929:CDS 40.0%
TTGTTGGATTCATTCGATGC+AGG + chr7.1:1089847-1089866 MS.gene025929:intron 40.0%
!! CGTCATAGCAAGAGTATTTG+AGG - chr7.1:1090742-1090761 None:intergenic 40.0%
!! TGAGCTTGTTGGACTTGAAA+TGG + chr7.1:1090051-1090070 MS.gene025929:CDS 40.0%
!! TTTTGGAGAGACTTCTCGAA+AGG + chr7.1:1089370-1089389 MS.gene025929:CDS 40.0%
AACGCCTTATCCCACTAAGT+GGG - chr7.1:1091056-1091075 None:intergenic 45.0%
ACACCACAAGTTTCTTGTCG+CGG + chr7.1:1090518-1090537 MS.gene025929:CDS 45.0%
CAACGAAATCGAGGCTTCTT+CGG - chr7.1:1090486-1090505 None:intergenic 45.0%
GAAAAATACCTGGAGATGGC+TGG - chr7.1:1090879-1090898 None:intergenic 45.0%
GCAGCGACACTTCTAATCTA+AGG - chr7.1:1089513-1089532 None:intergenic 45.0%
GTTCATATGCCAGACATGGA+TGG + chr7.1:1090016-1090035 MS.gene025929:CDS 45.0%
TAACCGCGACAAGAAACTTG+TGG - chr7.1:1090524-1090543 None:intergenic 45.0%
TACCCACCATATTAGCTCGA+TGG - chr7.1:1091230-1091249 None:intergenic 45.0%
TCATTGGACCAACGAAATCG+AGG - chr7.1:1090495-1090514 None:intergenic 45.0%
! TTCAGTGCTATTCGTGCACT+TGG - chr7.1:1089950-1089969 None:intergenic 45.0%
!! CTCGAAAGGTGTCAATACCA+TGG + chr7.1:1089384-1089403 MS.gene025929:CDS 45.0%
ACGCCTTATCCCACTAAGTG+GGG - chr7.1:1091055-1091074 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG - chr7.1:1091057-1091076 None:intergenic 50.0%
CGAAGAAGCCTCGATTTCGT+TGG + chr7.1:1090484-1090503 MS.gene025929:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr7.1:1091051-1091070 None:intergenic 50.0%
TATTCGTGCACTTGGAGCAG+TGG - chr7.1:1089942-1089961 None:intergenic 50.0%
!! CGAGCTAATATGGTGGGTAG+TGG + chr7.1:1091231-1091250 MS.gene025929:CDS 50.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr7.1:1091043-1091062 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr7.1:1091042-1091061 MS.gene025929:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr7.1:1091049-1091068 MS.gene025929:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr7.1:1091043-1091062 MS.gene025929:intron 55.0%
ACATGTGGCCAGCCATCTCC+AGG + chr7.1:1090868-1090887 MS.gene025929:CDS 60.0%
CGAGGCTTCTTCGGCGCTGT+TGG - chr7.1:1090477-1090496 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 1089303 1091344 1089303 ID=MS.gene025929
chr7.1 mRNA 1089303 1091344 1089303 ID=MS.gene025929.t1;Parent=MS.gene025929
chr7.1 exon 1089303 1089405 1089303 ID=MS.gene025929.t1.exon1;Parent=MS.gene025929.t1
chr7.1 CDS 1089303 1089405 1089303 ID=cds.MS.gene025929.t1;Parent=MS.gene025929.t1
chr7.1 exon 1089936 1090088 1089936 ID=MS.gene025929.t1.exon2;Parent=MS.gene025929.t1
chr7.1 CDS 1089936 1090088 1089936 ID=cds.MS.gene025929.t1;Parent=MS.gene025929.t1
chr7.1 exon 1090175 1090561 1090175 ID=MS.gene025929.t1.exon3;Parent=MS.gene025929.t1
chr7.1 CDS 1090175 1090561 1090175 ID=cds.MS.gene025929.t1;Parent=MS.gene025929.t1
chr7.1 exon 1090813 1090889 1090813 ID=MS.gene025929.t1.exon4;Parent=MS.gene025929.t1
chr7.1 CDS 1090813 1090889 1090813 ID=cds.MS.gene025929.t1;Parent=MS.gene025929.t1
chr7.1 exon 1091186 1091344 1091186 ID=MS.gene025929.t1.exon5;Parent=MS.gene025929.t1
chr7.1 CDS 1091186 1091344 1091186 ID=cds.MS.gene025929.t1;Parent=MS.gene025929.t1
Gene Sequence

>MS.gene025929

ATGAATGATGAGTTTCGAATTGGAATGAATATTCTTGCTGTTGATGATGACAGAACTTGTCTCAAGATTTTGGAGAGACTTCTCGAAAGGTGTCAATACCATGGTATGCTTCTTTTTCTTTTTTAAATATTAAAAAATTGTTTTTGACTATGAAGCAGTGACACGACATCATTAAATTGTAATCACAAGGGACGGTGCGTCCGATAACCTTAGATTAGAAGTGTCGCTGCTACAAAAGTTTTAGATTTGATTCTTTAGATCCTTTTGGCTAAGGCATTGTAATTAGAACGATAACGTTAACGGTTTCTTTTTCTTCTATTTTTTCTACATTAGTCTAGCTAATGCCTTGTACGAATCAATTATATTAGTTTAGTCTTACATTTTCTTCGATACTGTTTAGGTTCTACTAAATTATATTTGACCGATCAAATTCTCTCAAAGATTGGACGTTTTTAAAGTTCATAGTTTTAAAAAAAAATCTTGTGTCTAATCTTTTGTGAACTTATGTTATTTTTTGGATTTCAAATATTTAACTGCATCCAAATTGTTGGATTCATTCGATGCAGGACATAATGTATCAATTATTTTTCCTTTCATAATGATATTAATTTTAGTTATAATTATTTGTTGCAGTAACCACTGCTCCAAGTGCACGAATAGCACTGAATTTGTTAAGAGAAAACAAAAACAATTTTGACCTAGTAATGAGTAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAAATGGACCTACCTGTCATAAGTAAGTTATGCAATTCTCCAATCTTTTGTTACTGATACATTTATAACAAATTATCAAGTGTTTTAATTACAAAGTTTTGTTTTCAGTGTTTTCTGAAAATGATGATCCTAAGCTGGTTATGAAAGCAATTGATCTCGGTGCTTGTGATTATCTGCTGAAACCTGTTCAATTGAAAGAGGTGAAGATGATTTGGCAACATGTAATCAGAAAGAAGAAAACTAGCAAAAGAAGCAATCACGATGTGCCTAATTCTGATAGTGGAAATGGAATAGATTCAACTGTGACAAAAAATTCTGATAAAATTGAAAAGCCATCTAGAAAAAGAAAGGATAAGAATGAAGATGATGTTGAGGAAGAGAATGAGTATGATCATGAAAATGATGGTCCAACAGCGCCGAAGAAGCCTCGATTTCGTTGGTCCAATGACTTACACCACAAGTTTCTTGTCGCGGTTAACAAATTTGGCGTTGAAAGTATGTTTTTCCCTCTGCTTTCAATGTGCAAAAACAACTATCCTCAAATCTTTTATCTATTGCTATATTCGTCTTTATTTTTATCAAAGATGTTTGAGTAGGTTATAGCAATCCCAATGATGATATTAATATTATGATATGAAAACGAAAATTATACTTTGTTTTATTTGAAGATTTCCTCAAATACTCTTGCTATGACGTTTTTCAACATTGAACTGTGTTTCTCATTATAGTTGTTATTTTGTTTGCAGAGGCTAGGCCACAAAAGATTCTTAACTTGATGAATGTTGAAAATCTTACAAAGGAACATGTGGCCAGCCATCTCCAGGTATTTTTCTTTATCTCTTATGCTTTAGCTTTTTAAGCTATGAAGACAATCATGACAAAGACACGGATGCAAGACATGACATTGACACAATGACACTGCTATAAATTTATAAATTTTTAGTAATTAAATTAAATGTTAAATTAATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCGTTGTTGTTGTTGTTGTTGTTGTTGTCAAACACTAGACACACCTACCTAGTTTACATTTTACAAACACTTTAATTTAGGGAAATTTACTTGGTTTTTGTTTTTAAATCTGCAGAAATATAGACTAAAGTTGAAAAGTAGTAGTTATGGGAAAAACCATCGAGCTAATATGGTGGGTAGTGGTTCTGATACATCATCTCACTCAAGAATTGACACTCCTCCTAGTGTCAATATACATGGGTTGGCTACTCTTGATTTAAACAACTCCTTGTAA
Protein sequence

>MS.gene025929.t1

MNDEFRIGMNILAVDDDRTCLKILERLLERCQYHVTTAPSARIALNLLRENKNNFDLVMSNVHMPDMDGFKLLELVGLEMDLPVIMFSENDDPKLVMKAIDLGACDYLLKPVQLKEVKMIWQHVIRKKKTSKRSNHDVPNSDSGNGIDSTVTKNSDKIEKPSRKRKDKNEDDVEEENEYDHENDGPTAPKKPRFRWSNDLHHKFLVAVNKFGVEKARPQKILNLMNVENLTKEHVASHLQKYRLKLKSSSYGKNHRANMVGSGSDTSSHSRIDTPPSVNIHGLATLDLNNSL