Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025933.t1 | KEH39871.1 | 39.8 | 369 | 96 | 9 | 6 | 248 | 277 | 645 | 1.30E-44 | 190.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025933.t1 | A2X1N2 | 69.8 | 53 | 16 | 0 | 46 | 98 | 210 | 262 | 1.6e-14 | 81.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025933.t1 | A0A072VE88 | 39.8 | 369 | 96 | 9 | 6 | 248 | 277 | 645 | 9.7e-45 | 190.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene025933.t1 | TF | GARP-G2-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025933.t1 | MTR_7g117705 | 40.922 | 347 | 92 | 11 | 5 | 249 | 126 | 461 | 2.17e-56 | 189 |
| MS.gene025933.t1 | MTR_1g013180 | 53.333 | 165 | 53 | 5 | 108 | 248 | 481 | 645 | 1.43e-40 | 150 |
| MS.gene025933.t1 | MTR_1g013180 | 45.098 | 153 | 62 | 3 | 6 | 136 | 277 | 429 | 1.17e-22 | 98.6 |
| MS.gene025933.t1 | MTR_1g013170 | 62.069 | 116 | 22 | 3 | 5 | 98 | 125 | 240 | 2.57e-30 | 119 |
| MS.gene025933.t1 | MTR_1g013170 | 40.523 | 153 | 51 | 5 | 106 | 220 | 340 | 490 | 1.33e-22 | 97.8 |
| MS.gene025933.t1 | MTR_3g106220 | 47.826 | 115 | 42 | 2 | 2 | 98 | 133 | 247 | 1.23e-22 | 98.6 |
| MS.gene025933.t1 | MTR_3g102590 | 59.091 | 66 | 26 | 1 | 35 | 100 | 130 | 194 | 8.32e-19 | 83.2 |
| MS.gene025933.t1 | MTR_3g102590 | 46.000 | 100 | 35 | 2 | 35 | 134 | 130 | 210 | 2.30e-18 | 82.8 |
| MS.gene025933.t1 | MTR_1g032570 | 39.130 | 115 | 64 | 2 | 1 | 110 | 78 | 191 | 4.04e-17 | 82.0 |
| MS.gene025933.t1 | MTR_1g032570 | 39.130 | 115 | 64 | 2 | 1 | 110 | 147 | 260 | 4.45e-17 | 82.0 |
| MS.gene025933.t1 | MTR_1g013160 | 55.556 | 90 | 18 | 3 | 5 | 72 | 59 | 148 | 4.61e-17 | 77.4 |
| MS.gene025933.t1 | MTR_4g131600 | 41.818 | 110 | 47 | 2 | 6 | 98 | 141 | 250 | 1.33e-16 | 80.5 |
| MS.gene025933.t1 | MTR_2g450070 | 63.636 | 55 | 20 | 0 | 44 | 98 | 208 | 262 | 1.77e-16 | 80.1 |
| MS.gene025933.t1 | MTR_2g450070 | 63.636 | 55 | 20 | 0 | 44 | 98 | 208 | 262 | 1.93e-16 | 80.1 |
| MS.gene025933.t1 | MTR_4g021760 | 55.224 | 67 | 29 | 1 | 33 | 98 | 152 | 218 | 2.12e-16 | 78.6 |
| MS.gene025933.t1 | MTR_4g131570 | 48.750 | 80 | 40 | 1 | 45 | 124 | 199 | 277 | 6.63e-16 | 78.6 |
| MS.gene025933.t1 | MTR_2g034960 | 40.367 | 109 | 62 | 2 | 1 | 109 | 165 | 270 | 1.78e-15 | 77.0 |
| MS.gene025933.t1 | MTR_4g021790 | 46.053 | 76 | 41 | 0 | 23 | 98 | 142 | 217 | 4.36e-15 | 74.3 |
| MS.gene025933.t1 | MTR_8g079940 | 50.538 | 93 | 36 | 3 | 14 | 98 | 168 | 258 | 4.78e-15 | 75.9 |
| MS.gene025933.t1 | MTR_4g021845 | 46.154 | 78 | 40 | 2 | 23 | 99 | 142 | 218 | 5.08e-15 | 73.2 |
| MS.gene025933.t1 | MTR_4g121020 | 62.963 | 54 | 20 | 0 | 45 | 98 | 211 | 264 | 5.12e-15 | 75.9 |
| MS.gene025933.t1 | MTR_4g121020 | 62.963 | 54 | 20 | 0 | 45 | 98 | 211 | 264 | 5.35e-15 | 75.9 |
| MS.gene025933.t1 | MTR_4g121020 | 56.923 | 65 | 27 | 1 | 45 | 109 | 107 | 170 | 5.47e-15 | 75.5 |
| MS.gene025933.t1 | MTR_4g131580 | 40.179 | 112 | 48 | 2 | 6 | 98 | 138 | 249 | 2.03e-14 | 73.9 |
| MS.gene025933.t1 | MTR_3g102600 | 60.784 | 51 | 20 | 0 | 48 | 98 | 82 | 132 | 7.25e-14 | 68.2 |
| MS.gene025933.t1 | MTR_6g045327 | 33.005 | 203 | 91 | 9 | 16 | 184 | 148 | 339 | 9.49e-14 | 71.2 |
| MS.gene025933.t1 | MTR_3g102600 | 60.784 | 51 | 20 | 0 | 48 | 98 | 131 | 181 | 1.12e-13 | 68.6 |
| MS.gene025933.t1 | MTR_7g026400 | 36.667 | 120 | 70 | 3 | 48 | 166 | 156 | 270 | 1.42e-13 | 71.2 |
| MS.gene025933.t1 | MTR_3g102600 | 60.784 | 51 | 20 | 0 | 48 | 98 | 82 | 132 | 2.11e-13 | 67.8 |
| MS.gene025933.t1 | MTR_3g102600 | 60.784 | 51 | 20 | 0 | 48 | 98 | 131 | 181 | 2.97e-13 | 68.2 |
| MS.gene025933.t1 | MTR_4g021855 | 50.746 | 67 | 32 | 1 | 33 | 98 | 151 | 217 | 3.33e-13 | 69.3 |
| MS.gene025933.t1 | MTR_3g086100 | 54.688 | 64 | 28 | 1 | 45 | 108 | 124 | 186 | 6.97e-13 | 69.3 |
| MS.gene025933.t1 | MTR_3g086100 | 54.688 | 64 | 28 | 1 | 45 | 108 | 195 | 257 | 7.69e-13 | 69.3 |
| MS.gene025933.t1 | MTR_0450s0040 | 31.429 | 140 | 88 | 2 | 48 | 185 | 168 | 301 | 7.81e-13 | 68.6 |
| MS.gene025933.t1 | MTR_7g115530 | 53.448 | 58 | 26 | 1 | 47 | 103 | 216 | 273 | 2.03e-11 | 63.9 |
| MS.gene025933.t1 | MTR_5g014040 | 41.026 | 78 | 46 | 0 | 24 | 101 | 246 | 323 | 2.27e-11 | 64.7 |
| MS.gene025933.t1 | MTR_5g014040 | 41.026 | 78 | 46 | 0 | 24 | 101 | 286 | 363 | 2.37e-11 | 64.7 |
| MS.gene025933.t1 | MTR_4g098870 | 45.070 | 71 | 39 | 0 | 28 | 98 | 289 | 359 | 2.65e-11 | 64.3 |
| MS.gene025933.t1 | MTR_7g115530 | 58.491 | 53 | 21 | 1 | 47 | 98 | 216 | 268 | 2.85e-11 | 63.5 |
| MS.gene025933.t1 | MTR_4g098870 | 45.070 | 71 | 39 | 0 | 28 | 98 | 309 | 379 | 3.09e-11 | 64.3 |
| MS.gene025933.t1 | MTR_7g115530 | 58.491 | 53 | 21 | 1 | 47 | 98 | 216 | 268 | 3.10e-11 | 63.2 |
| MS.gene025933.t1 | MTR_7g115530 | 58.491 | 53 | 21 | 1 | 47 | 98 | 216 | 268 | 3.60e-11 | 63.5 |
| MS.gene025933.t1 | MTR_7g115530 | 58.491 | 53 | 21 | 1 | 47 | 98 | 216 | 268 | 3.86e-11 | 63.5 |
| MS.gene025933.t1 | MTR_4g098870 | 45.070 | 71 | 39 | 0 | 28 | 98 | 289 | 359 | 4.60e-11 | 63.9 |
| MS.gene025933.t1 | MTR_4g098870 | 45.070 | 71 | 39 | 0 | 28 | 98 | 328 | 398 | 4.84e-11 | 63.5 |
| MS.gene025933.t1 | MTR_4g098870 | 45.070 | 71 | 39 | 0 | 28 | 98 | 309 | 379 | 5.18e-11 | 63.5 |
| MS.gene025933.t1 | MTR_7g115530 | 58.491 | 53 | 21 | 1 | 47 | 98 | 216 | 268 | 5.67e-11 | 63.2 |
| MS.gene025933.t1 | MTR_2g090675 | 37.662 | 77 | 47 | 1 | 23 | 98 | 134 | 210 | 7.43e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025933.t1 | AT4G31920 | 40.496 | 121 | 49 | 3 | 30 | 137 | 151 | 261 | 2.25e-18 | 85.9 |
| MS.gene025933.t1 | AT5G58080 | 50.000 | 88 | 21 | 1 | 34 | 98 | 156 | 243 | 3.39e-17 | 82.4 |
| MS.gene025933.t1 | AT3G16857 | 55.405 | 74 | 24 | 1 | 34 | 98 | 213 | 286 | 1.05e-16 | 80.9 |
| MS.gene025933.t1 | AT3G16857 | 55.405 | 74 | 24 | 1 | 34 | 98 | 213 | 286 | 1.06e-16 | 80.9 |
| MS.gene025933.t1 | AT3G16857 | 55.405 | 74 | 24 | 1 | 34 | 98 | 143 | 216 | 1.15e-16 | 80.9 |
| MS.gene025933.t1 | AT2G25180 | 50.000 | 92 | 34 | 2 | 19 | 98 | 153 | 244 | 1.30e-15 | 77.4 |
| MS.gene025933.t1 | AT2G01760 | 48.571 | 70 | 35 | 1 | 44 | 113 | 130 | 198 | 1.90e-13 | 70.1 |
| MS.gene025933.t1 | AT2G01760 | 56.364 | 55 | 24 | 0 | 44 | 98 | 195 | 249 | 2.69e-13 | 70.1 |
| MS.gene025933.t1 | AT2G01760 | 56.364 | 55 | 24 | 0 | 44 | 98 | 223 | 277 | 3.28e-13 | 70.1 |
| MS.gene025933.t1 | AT5G44190 | 55.000 | 60 | 24 | 1 | 39 | 98 | 140 | 196 | 4.49e-13 | 69.3 |
| MS.gene025933.t1 | AT5G44190 | 55.000 | 60 | 24 | 1 | 39 | 98 | 140 | 196 | 4.60e-13 | 69.3 |
| MS.gene025933.t1 | AT5G07210 | 46.835 | 79 | 33 | 2 | 28 | 98 | 202 | 279 | 4.92e-12 | 67.0 |
| MS.gene025933.t1 | AT5G07210 | 46.835 | 79 | 33 | 2 | 28 | 98 | 194 | 271 | 5.03e-12 | 66.6 |
| MS.gene025933.t1 | AT1G67710 | 61.017 | 59 | 21 | 2 | 51 | 108 | 121 | 178 | 9.20e-12 | 65.9 |
| MS.gene025933.t1 | AT1G67710 | 61.017 | 59 | 21 | 2 | 51 | 108 | 130 | 187 | 1.02e-11 | 65.5 |
| MS.gene025933.t1 | AT1G67710 | 67.347 | 49 | 15 | 1 | 51 | 98 | 195 | 243 | 1.12e-11 | 65.5 |
| MS.gene025933.t1 | AT5G49240 | 33.333 | 108 | 58 | 2 | 18 | 111 | 178 | 285 | 1.77e-11 | 63.9 |
| MS.gene025933.t1 | AT5G59570 | 49.057 | 53 | 27 | 0 | 46 | 98 | 138 | 190 | 2.61e-11 | 63.5 |
| MS.gene025933.t1 | AT5G59570 | 49.057 | 53 | 27 | 0 | 46 | 98 | 138 | 190 | 2.61e-11 | 63.5 |
| MS.gene025933.t1 | AT2G20570 | 42.857 | 84 | 33 | 2 | 27 | 98 | 122 | 202 | 6.79e-11 | 63.2 |
Find 53 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATGTAAGAATTTGTTTC+GGG | 0.256319 | 7.1:-1135461 | None:intergenic |
| TATCTTGTTTAGCTACAATT+TGG | 0.259491 | 7.1:+1136754 | MS.gene025933:intron |
| TCAAATGAGAGTTGATTTCT+TGG | 0.262914 | 7.1:+1136868 | MS.gene025933:CDS |
| TTGTGGTTCAAGTTTCCTTC+TGG | 0.295699 | 7.1:-1135632 | None:intergenic |
| CGAGGCTTCTTCTGCGTTGT+TGG | 0.319233 | 7.1:-1134531 | None:intergenic |
| TTGGTTTCTTACCACCTTCA+TGG | 0.325239 | 7.1:+1136773 | MS.gene025933:CDS |
| CTTGTCGCAGTTAATCAATT+TGG | 0.331705 | 7.1:+1134588 | MS.gene025933:CDS |
| TGGAATGTAAGAATTTGTTT+CGG | 0.379560 | 7.1:-1135462 | None:intergenic |
| GGCATTCTTTGAACATGGTT+CGG | 0.389834 | 7.1:-1135347 | None:intergenic |
| TACAATTCTTCTCATCTGAT+TGG | 0.391165 | 7.1:+1135563 | MS.gene025933:CDS |
| TGAGATGCTACAGAAGAAAT+TGG | 0.393613 | 7.1:-1135368 | None:intergenic |
| AGAAGGGCTGCCATCGAAAC+AGG | 0.408048 | 7.1:+1135679 | MS.gene025933:CDS |
| AATCACTATGATAGTGGAAA+TGG | 0.412435 | 7.1:+1134444 | MS.gene025933:CDS |
| AAACTTGTGGTGTAAGTTAT+CGG | 0.420834 | 7.1:-1134565 | None:intergenic |
| ACTAGCAATGTGACATTTCA+AGG | 0.427221 | 7.1:+1135506 | MS.gene025933:CDS |
| TGGTTCTGTTACATTTCAAC+CGG | 0.443329 | 7.1:+1135291 | MS.gene025933:CDS |
| TCTTTGAACATGGTTCGGTT+TGG | 0.444140 | 7.1:-1135342 | None:intergenic |
| CAACCGGCTTACGTTTCAAC+CGG | 0.445810 | 7.1:+1135307 | MS.gene025933:CDS |
| GTTCGGTTTGGCGCGAGCTA+TGG | 0.448022 | 7.1:-1135330 | None:intergenic |
| CATCTGATTGGTAGTTCCAT+AGG | 0.448837 | 7.1:+1135575 | MS.gene025933:CDS |
| AATTTCGATCATGATTATCA+TGG | 0.470717 | 7.1:-1135541 | None:intergenic |
| AGAAGCAATCACTATGATAG+TGG | 0.474525 | 7.1:+1134438 | MS.gene025933:CDS |
| GGGAATCATAGAAGAGCCTA+TGG | 0.488830 | 7.1:-1135591 | None:intergenic |
| GGTTTGGCGCGAGCTATGGC+CGG | 0.518966 | 7.1:-1135326 | None:intergenic |
| GGTTCAACATCATTCACAAA+GGG | 0.519106 | 7.1:-1135611 | None:intergenic |
| CAATTATATGCTATTAACTC+TGG | 0.520025 | 7.1:+1136596 | MS.gene025933:CDS |
| ATTCTGATAAATCTAGAAAG+AGG | 0.520246 | 7.1:+1134490 | MS.gene025933:CDS |
| ACATGTGGCCAGCCATCTCC+AGG | 0.523004 | 7.1:+1134937 | MS.gene025933:CDS |
| ATAAAAGTACTTCTTCAACT+TGG | 0.532938 | 7.1:-1136654 | None:intergenic |
| AGAAGAAGCCTCGAGTTGCT+TGG | 0.543514 | 7.1:+1134541 | MS.gene025933:CDS |
| AAGAGGAAGGATAAGAATGA+TGG | 0.547203 | 7.1:+1134507 | MS.gene025933:CDS |
| TTATATGCTATTAACTCTGG+TGG | 0.571764 | 7.1:+1136599 | MS.gene025933:CDS |
| GCAATGTGACATTTCAAGGA+TGG | 0.580249 | 7.1:+1135510 | MS.gene025933:CDS |
| TGATAAATCTAGAAAGAGGA+AGG | 0.586660 | 7.1:+1134494 | MS.gene025933:CDS |
| AAATTGGCATTCTTTGAACA+TGG | 0.589855 | 7.1:-1135352 | None:intergenic |
| TATATGCTATTAACTCTGGT+GGG | 0.592408 | 7.1:+1136600 | MS.gene025933:CDS |
| CGTATCGAGGAGTTAACAGA+AGG | 0.595647 | 7.1:+1135662 | MS.gene025933:CDS |
| GTGAATGATGTTGAACCAGA+AGG | 0.596806 | 7.1:+1135617 | MS.gene025933:CDS |
| TGGCCGGTTGAAACGTAAGC+CGG | 0.611007 | 7.1:-1135310 | None:intergenic |
| GAATGCTGAAAATCTTACAA+AGG | 0.625912 | 7.1:+1134913 | MS.gene025933:CDS |
| TGGTTCAACATCATTCACAA+AGG | 0.625972 | 7.1:-1135612 | None:intergenic |
| AAATCTTACAAAGGAACATG+TGG | 0.626847 | 7.1:+1134922 | MS.gene025933:CDS |
| CGTAGAAGTATCCATGAAGG+TGG | 0.629672 | 7.1:-1136784 | None:intergenic |
| GTTCGTAGAAGTATCCATGA+AGG | 0.635882 | 7.1:-1136787 | None:intergenic |
| ATCAAGTTAAGAATCTTCTG+TGG | 0.644023 | 7.1:-1134890 | None:intergenic |
| AGAATATATACAATGAACAC+AGG | 0.658058 | 7.1:-1136828 | None:intergenic |
| TTATCGGACCAAGCAACTCG+AGG | 0.664697 | 7.1:-1134549 | None:intergenic |
| CCTCGATACGATCATCCTTG+TGG | 0.674046 | 7.1:-1135649 | None:intergenic |
| AGAAGGAAACTTGAACCACA+AGG | 0.688843 | 7.1:+1135634 | MS.gene025933:CDS |
| ACAAATTCTTACATTCCACA+AGG | 0.691467 | 7.1:+1135467 | MS.gene025933:CDS |
| CCACAAGGATGATCGTATCG+AGG | 0.702880 | 7.1:+1135649 | MS.gene025933:CDS |
| GTATCGAGGAGTTAACAGAA+GGG | 0.721792 | 7.1:+1135663 | MS.gene025933:CDS |
| TAACTGCGACAAGAAACTTG+TGG | 0.789334 | 7.1:-1134578 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATAAAAAAATAAAACT+CGG | - | chr7.1:1135739-1135758 | None:intergenic | 10.0% |
| !!! | ATAATACAAAGTATAATTTT+CGG | - | chr7.1:1134778-1134797 | None:intergenic | 10.0% |
| !!! | TGAATTATTATTTTTTGAAA+GGG | + | chr7.1:1136121-1136140 | MS.gene025933:intron | 10.0% |
| !!! | TTGAATTATTATTTTTTGAA+AGG | + | chr7.1:1136120-1136139 | MS.gene025933:intron | 10.0% |
| !! | ATAAAAGTTATTTAAGCATA+AGG | + | chr7.1:1136219-1136238 | MS.gene025933:intron | 15.0% |
| !! | CTTCTGTTTATATAAATTTA+GGG | + | chr7.1:1135870-1135889 | MS.gene025933:intron | 15.0% |
| !! | TAATTATGATTAAAAATCAC+AGG | + | chr7.1:1135780-1135799 | MS.gene025933:intron | 15.0% |
| !!! | GGAATTATTATTTTTTGAAA+AGG | + | chr7.1:1136180-1136199 | MS.gene025933:intron | 15.0% |
| !!! | TTTTACAAACACTTTAATTT+AGG | + | chr7.1:1135152-1135171 | MS.gene025933:intron | 15.0% |
| !! | AATAAAAGTTATTCAAGCTT+TGG | + | chr7.1:1136159-1136178 | MS.gene025933:intron | 20.0% |
| !! | ATATATGCATGCTTTAATTA+TGG | - | chr7.1:1136510-1136529 | None:intergenic | 20.0% |
| !! | CATAATATTAATCTCAACAT+TGG | - | chr7.1:1134747-1134766 | None:intergenic | 20.0% |
| !! | GCTTCTGTTTATATAAATTT+AGG | + | chr7.1:1135869-1135888 | MS.gene025933:intron | 20.0% |
| !!! | AAAAAATCTTTGACTCTTTT+GGG | - | chr7.1:1136088-1136107 | None:intergenic | 20.0% |
| !!! | TAAAAAATCTTTGACTCTTT+TGG | - | chr7.1:1136089-1136108 | None:intergenic | 20.0% |
| !!! | TTGAAATGAGTTGAAAAAAT+AGG | - | chr7.1:1135988-1136007 | None:intergenic | 20.0% |
| ! | AAAAAATGTGCAATGACATT+TGG | + | chr7.1:1135420-1135439 | MS.gene025933:CDS | 25.0% |
| ! | AAGAGATAAAGAAAAATACC+TGG | - | chr7.1:1134958-1134977 | None:intergenic | 25.0% |
| ! | AATAAAGACGAATATAGCAA+TGG | - | chr7.1:1134677-1134696 | None:intergenic | 25.0% |
| ! | AATTTCGATCATGATTATCA+TGG | - | chr7.1:1135544-1135563 | None:intergenic | 25.0% |
| ! | AGAATATATACAATGAACAC+AGG | - | chr7.1:1136831-1136850 | None:intergenic | 25.0% |
| ! | ATTCTGATAAATCTAGAAAG+AGG | + | chr7.1:1134490-1134509 | MS.gene025933:CDS | 25.0% |
| ! | ATTTAAGCATAAGGTTTCAA+AGG | + | chr7.1:1136228-1136247 | MS.gene025933:intron | 25.0% |
| ! | CAATTATATGCTATTAACTC+TGG | + | chr7.1:1136596-1136615 | MS.gene025933:CDS | 25.0% |
| ! | GCTTGAATCATATAATTCAA+AGG | + | chr7.1:1136049-1136068 | MS.gene025933:intron | 25.0% |
| ! | TAGCTAAAATTCATCTCATT+TGG | + | chr7.1:1136380-1136399 | MS.gene025933:intron | 25.0% |
| ! | TATGATTAAAAATCACAGGA+TGG | + | chr7.1:1135784-1135803 | MS.gene025933:intron | 25.0% |
| ! | TCTATTATTAGCTAATCACT+AGG | + | chr7.1:1136679-1136698 | MS.gene025933:intron | 25.0% |
| ! | TTTATCAAAGATGTTTGAGT+AGG | + | chr7.1:1134707-1134726 | MS.gene025933:intron | 25.0% |
| !! | AATTTTATTACCTGTTTCGA+TGG | - | chr7.1:1135692-1135711 | None:intergenic | 25.0% |
| !! | TAAATATTTTCTTCTGATGC+AGG | + | chr7.1:1136571-1136590 | MS.gene025933:intron | 25.0% |
| !! | TATCTTGTTTAGCTACAATT+TGG | + | chr7.1:1136754-1136773 | MS.gene025933:intron | 25.0% |
| !! | TGGAATGTAAGAATTTGTTT+CGG | - | chr7.1:1135465-1135484 | None:intergenic | 25.0% |
| !! | TGTTTATATAAATTTAGGGC+TGG | + | chr7.1:1135874-1135893 | MS.gene025933:intron | 25.0% |
| !! | TTATTGATAGCTATATGTGA+TGG | + | chr7.1:1136469-1136488 | MS.gene025933:intron | 25.0% |
| !!! | AAGCTGAAAAGTATTAGTTT+TGG | + | chr7.1:1135229-1135248 | MS.gene025933:intron | 25.0% |
| !!! | AGCTGAAAAGTATTAGTTTT+GGG | + | chr7.1:1135230-1135249 | MS.gene025933:intron | 25.0% |
| !!! | ATAAAAGTACTTCTTCAACT+TGG | - | chr7.1:1136657-1136676 | None:intergenic | 25.0% |
| !!! | CTCTTTTGGGTATAAAAAAT+TGG | - | chr7.1:1136075-1136094 | None:intergenic | 25.0% |
| !!! | GTTTGCTTTTGAAGTATTTT+AGG | + | chr7.1:1136710-1136729 | MS.gene025933:intron | 25.0% |
| AAACCAAAAAGCTAATATGG+TGG | + | chr7.1:1135255-1135274 | MS.gene025933:intron | 30.0% | |
| AAACTTGTGGTGTAAGTTAT+CGG | - | chr7.1:1134568-1134587 | None:intergenic | 30.0% | |
| AAATCTTACAAAGGAACATG+TGG | + | chr7.1:1134922-1134941 | MS.gene025933:CDS | 30.0% | |
| AAATTGGCATTCTTTGAACA+TGG | - | chr7.1:1135355-1135374 | None:intergenic | 30.0% | |
| AATATGGTGGCAAATTTAGT+TGG | + | chr7.1:1135268-1135287 | MS.gene025933:intron | 30.0% | |
| ACAAATTCTTACATTCCACA+AGG | + | chr7.1:1135467-1135486 | MS.gene025933:CDS | 30.0% | |
| ATATCTTGCATCATCTATGT+CGG | - | chr7.1:1135013-1135032 | None:intergenic | 30.0% | |
| ATCAAGTTAAGAATCTTCTG+TGG | - | chr7.1:1134893-1134912 | None:intergenic | 30.0% | |
| ATGCTTTAATTATGGACCAA+AGG | - | chr7.1:1136502-1136521 | None:intergenic | 30.0% | |
| CAAAGTGTATATCAGCATAA+TGG | + | chr7.1:1136264-1136283 | MS.gene025933:intron | 30.0% | |
| GAATGCTGAAAATCTTACAA+AGG | + | chr7.1:1134913-1134932 | MS.gene025933:CDS | 30.0% | |
| GCTAAACAAGATAATGACAA+TGG | - | chr7.1:1136747-1136766 | None:intergenic | 30.0% | |
| GGAAAACCAAAAAGCTAATA+TGG | + | chr7.1:1135252-1135271 | MS.gene025933:intron | 30.0% | |
| TAAAGAAAAATACCTGGAGA+TGG | - | chr7.1:1134952-1134971 | None:intergenic | 30.0% | |
| TACAATTCTTCTCATCTGAT+TGG | + | chr7.1:1135563-1135582 | MS.gene025933:CDS | 30.0% | |
| TATATGCTATTAACTCTGGT+GGG | + | chr7.1:1136600-1136619 | MS.gene025933:CDS | 30.0% | |
| TGATAAATCTAGAAAGAGGA+AGG | + | chr7.1:1134494-1134513 | MS.gene025933:CDS | 30.0% | |
| TTATATGCTATTAACTCTGG+TGG | + | chr7.1:1136599-1136618 | MS.gene025933:CDS | 30.0% | |
| TTTCTCAAGTTCTTCTCATT+TGG | + | chr7.1:1136340-1136359 | MS.gene025933:intron | 30.0% | |
| ! | GGAATGTAAGAATTTGTTTC+GGG | - | chr7.1:1135464-1135483 | None:intergenic | 30.0% |
| ! | GTTTTCCCAATTTGATTCAT+GGG | - | chr7.1:1136314-1136333 | None:intergenic | 30.0% |
| ! | TCAAATGAGAGTTGATTTCT+TGG | + | chr7.1:1136868-1136887 | MS.gene025933:CDS | 30.0% |
| ! | TGTTTTCCCAATTTGATTCA+TGG | - | chr7.1:1136315-1136334 | None:intergenic | 30.0% |
| !! | AATCACTATGATAGTGGAAA+TGG | + | chr7.1:1134444-1134463 | MS.gene025933:CDS | 30.0% |
| !!! | AGTTGTTATTTTGTTTGCAG+AGG | + | chr7.1:1134862-1134881 | MS.gene025933:intron | 30.0% |
| !!! | GCTGAAAAGTATTAGTTTTG+GGG | + | chr7.1:1135231-1135250 | MS.gene025933:intron | 30.0% |
| AAGAGGAAGGATAAGAATGA+TGG | + | chr7.1:1134507-1134526 | MS.gene025933:CDS | 35.0% | |
| ACTAGCAATGTGACATTTCA+AGG | + | chr7.1:1135506-1135525 | MS.gene025933:CDS | 35.0% | |
| AGAAGCAATCACTATGATAG+TGG | + | chr7.1:1134438-1134457 | MS.gene025933:CDS | 35.0% | |
| AGCAGTACAAGTACACAAAT+AGG | - | chr7.1:1135849-1135868 | None:intergenic | 35.0% | |
| AGTCAACCCATGAATCAAAT+TGG | + | chr7.1:1136305-1136324 | MS.gene025933:intron | 35.0% | |
| CTGTTAAAAACATCACCTTG+TGG | - | chr7.1:1135485-1135504 | None:intergenic | 35.0% | |
| CTTGTCGCAGTTAATCAATT+TGG | + | chr7.1:1134588-1134607 | MS.gene025933:CDS | 35.0% | |
| GAACAACTGAGTTCAACATT+AGG | + | chr7.1:1136014-1136033 | MS.gene025933:intron | 35.0% | |
| GGTTCAACATCATTCACAAA+GGG | - | chr7.1:1135614-1135633 | None:intergenic | 35.0% | |
| GTCAACCCATGAATCAAATT+GGG | + | chr7.1:1136306-1136325 | MS.gene025933:intron | 35.0% | |
| TGAGATGCTACAGAAGAAAT+TGG | - | chr7.1:1135371-1135390 | None:intergenic | 35.0% | |
| TGGTTCAACATCATTCACAA+AGG | - | chr7.1:1135615-1135634 | None:intergenic | 35.0% | |
| ! | TGGTTCTGTTACATTTCAAC+CGG | + | chr7.1:1135291-1135310 | MS.gene025933:CDS | 35.0% |
| ! | TTTTTGCACATTGAAAACCG+AGG | - | chr7.1:1134632-1134651 | None:intergenic | 35.0% |
| !! | TTATTTTGTTTGCAGAGGCT+AGG | + | chr7.1:1134867-1134886 | MS.gene025933:intron | 35.0% |
| !!! | TTGCCACCATATTAGCTTTT+TGG | - | chr7.1:1135261-1135280 | None:intergenic | 35.0% |
| AATCACAGGATGGCTTAAAC+TGG | + | chr7.1:1135794-1135813 | MS.gene025933:intron | 40.0% | |
| AGAAGGAAACTTGAACCACA+AGG | + | chr7.1:1135634-1135653 | MS.gene025933:CDS | 40.0% | |
| ATGGTGGCAAATTTAGTTGG+TGG | + | chr7.1:1135271-1135290 | MS.gene025933:intron | 40.0% | |
| ATGTGATGGCAACATTCCTT+TGG | + | chr7.1:1136483-1136502 | MS.gene025933:intron | 40.0% | |
| GAGCCAACTCGAATTTACAT+CGG | - | chr7.1:1136446-1136465 | None:intergenic | 40.0% | |
| GATGATGCAAGATATGACAC+TGG | + | chr7.1:1135018-1135037 | MS.gene025933:intron | 40.0% | |
| GCAATGTGACATTTCAAGGA+TGG | + | chr7.1:1135510-1135529 | MS.gene025933:CDS | 40.0% | |
| GGCATTCTTTGAACATGGTT+CGG | - | chr7.1:1135350-1135369 | None:intergenic | 40.0% | |
| GTATCGAGGAGTTAACAGAA+GGG | + | chr7.1:1135663-1135682 | MS.gene025933:CDS | 40.0% | |
| GTGAATGATGTTGAACCAGA+AGG | + | chr7.1:1135617-1135636 | MS.gene025933:CDS | 40.0% | |
| GTTCCGATGTAAATTCGAGT+TGG | + | chr7.1:1136440-1136459 | MS.gene025933:intron | 40.0% | |
| TAACTGCGACAAGAAACTTG+TGG | - | chr7.1:1134581-1134600 | None:intergenic | 40.0% | |
| TTGGTTTCTTACCACCTTCA+TGG | + | chr7.1:1136773-1136792 | MS.gene025933:CDS | 40.0% | |
| ! | CATCTGATTGGTAGTTCCAT+AGG | + | chr7.1:1135575-1135594 | MS.gene025933:CDS | 40.0% |
| ! | TTGTGGTTCAAGTTTCCTTC+TGG | - | chr7.1:1135635-1135654 | None:intergenic | 40.0% |
| !! | CGTCATAGCAAGAGTATTTG+AGG | - | chr7.1:1134811-1134830 | None:intergenic | 40.0% |
| !! | GATGTAAATTCGAGTTGGCT+CGG | + | chr7.1:1136445-1136464 | MS.gene025933:intron | 40.0% |
| !! | GTTCGTAGAAGTATCCATGA+AGG | - | chr7.1:1136790-1136809 | None:intergenic | 40.0% |
| !! | TCTTTGAACATGGTTCGGTT+TGG | - | chr7.1:1135345-1135364 | None:intergenic | 40.0% |
| CGTATCGAGGAGTTAACAGA+AGG | + | chr7.1:1135662-1135681 | MS.gene025933:CDS | 45.0% | |
| GAAAAATACCTGGAGATGGC+TGG | - | chr7.1:1134948-1134967 | None:intergenic | 45.0% | |
| GGGAATCATAGAAGAGCCTA+TGG | - | chr7.1:1135594-1135613 | None:intergenic | 45.0% | |
| GTCAGACACTAGACACATCT+TGG | + | chr7.1:1135113-1135132 | MS.gene025933:intron | 45.0% | |
| GTTGACAGTACGTTCTTCCT+CGG | + | chr7.1:1134612-1134631 | MS.gene025933:intron | 45.0% | |
| !! | CGTAGAAGTATCCATGAAGG+TGG | - | chr7.1:1136787-1136806 | None:intergenic | 45.0% |
| CCACAAGGATGATCGTATCG+AGG | + | chr7.1:1135649-1135668 | MS.gene025933:CDS | 50.0% | |
| CCTCGATACGATCATCCTTG+TGG | - | chr7.1:1135652-1135671 | None:intergenic | 50.0% | |
| TTATCGGACCAAGCAACTCG+AGG | - | chr7.1:1134552-1134571 | None:intergenic | 50.0% | |
| ! | AGAAGAAGCCTCGAGTTGCT+TGG | + | chr7.1:1134541-1134560 | MS.gene025933:CDS | 50.0% |
| ! | CAACCGGCTTACGTTTCAAC+CGG | + | chr7.1:1135307-1135326 | MS.gene025933:CDS | 50.0% |
| AGAAGGGCTGCCATCGAAAC+AGG | + | chr7.1:1135679-1135698 | MS.gene025933:CDS | 55.0% | |
| CGAGGCTTCTTCTGCGTTGT+TGG | - | chr7.1:1134534-1134553 | None:intergenic | 55.0% | |
| TGGCCGGTTGAAACGTAAGC+CGG | - | chr7.1:1135313-1135332 | None:intergenic | 55.0% | |
| ACATGTGGCCAGCCATCTCC+AGG | + | chr7.1:1134937-1134956 | MS.gene025933:CDS | 60.0% | |
| !! | GTTCGGTTTGGCGCGAGCTA+TGG | - | chr7.1:1135333-1135352 | None:intergenic | 60.0% |
| GGTTTGGCGCGAGCTATGGC+CGG | - | chr7.1:1135329-1135348 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 1134402 | 1136901 | 1134402 | ID=MS.gene025933 |
| chr7.1 | mRNA | 1134402 | 1136901 | 1134402 | ID=MS.gene025933.t1;Parent=MS.gene025933 |
| chr7.1 | exon | 1134402 | 1134618 | 1134402 | ID=MS.gene025933.t1.exon1;Parent=MS.gene025933.t1 |
| chr7.1 | CDS | 1134402 | 1134618 | 1134402 | ID=cds.MS.gene025933.t1;Parent=MS.gene025933.t1 |
| chr7.1 | exon | 1134882 | 1134958 | 1134882 | ID=MS.gene025933.t1.exon2;Parent=MS.gene025933.t1 |
| chr7.1 | CDS | 1134882 | 1134958 | 1134882 | ID=cds.MS.gene025933.t1;Parent=MS.gene025933.t1 |
| chr7.1 | exon | 1135287 | 1135700 | 1135287 | ID=MS.gene025933.t1.exon3;Parent=MS.gene025933.t1 |
| chr7.1 | CDS | 1135287 | 1135700 | 1135287 | ID=cds.MS.gene025933.t1;Parent=MS.gene025933.t1 |
| chr7.1 | exon | 1136593 | 1136666 | 1136593 | ID=MS.gene025933.t1.exon4;Parent=MS.gene025933.t1 |
| chr7.1 | CDS | 1136593 | 1136666 | 1136593 | ID=cds.MS.gene025933.t1;Parent=MS.gene025933.t1 |
| chr7.1 | exon | 1136766 | 1136901 | 1136766 | ID=MS.gene025933.t1.exon5;Parent=MS.gene025933.t1 |
| chr7.1 | CDS | 1136766 | 1136901 | 1136766 | ID=cds.MS.gene025933.t1;Parent=MS.gene025933.t1 |
| Gene Sequence |
| Protein sequence |
