Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026023.t1 | XP_003626454.1 | 95.9 | 392 | 11 | 4 | 1 | 390 | 1 | 389 | 2.00E-178 | 635.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026023.t1 | Q99090 | 50.6 | 403 | 167 | 11 | 1 | 385 | 1 | 389 | 1.9e-84 | 314.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026023.t1 | G7L1X5 | 95.9 | 392 | 11 | 4 | 1 | 390 | 1 | 389 | 1.5e-178 | 635.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene026023.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026023.t1 | MTR_7g115120 | 96.429 | 392 | 9 | 4 | 1 | 390 | 1 | 389 | 0.0 | 756 |
| MS.gene026023.t1 | MTR_1g080920 | 56.188 | 404 | 155 | 9 | 1 | 386 | 1 | 400 | 2.76e-129 | 378 |
| MS.gene026023.t1 | MTR_7g115140 | 58.382 | 173 | 51 | 4 | 97 | 267 | 53 | 206 | 1.12e-53 | 177 |
| MS.gene026023.t1 | MTR_3g109310 | 52.518 | 139 | 58 | 4 | 149 | 280 | 76 | 213 | 3.30e-29 | 115 |
| MS.gene026023.t1 | MTR_1g008990 | 57.851 | 121 | 45 | 3 | 168 | 285 | 142 | 259 | 1.61e-23 | 100 |
| MS.gene026023.t1 | MTR_1g008990 | 54.167 | 120 | 46 | 3 | 168 | 284 | 142 | 255 | 5.17e-20 | 89.4 |
| MS.gene026023.t1 | MTR_4g070860 | 39.655 | 116 | 59 | 1 | 171 | 286 | 17 | 121 | 4.24e-16 | 75.5 |
| MS.gene026023.t1 | MTR_3g110010 | 56.410 | 78 | 34 | 0 | 199 | 276 | 633 | 710 | 3.24e-15 | 77.8 |
| MS.gene026023.t1 | MTR_3g109982 | 56.579 | 76 | 33 | 0 | 201 | 276 | 651 | 726 | 6.15e-15 | 77.0 |
| MS.gene026023.t1 | MTR_3g117120 | 39.785 | 93 | 56 | 0 | 192 | 284 | 27 | 119 | 1.31e-14 | 71.2 |
| MS.gene026023.t1 | MTR_8g015250 | 40.404 | 99 | 53 | 1 | 169 | 267 | 54 | 146 | 1.13e-13 | 69.3 |
| MS.gene026023.t1 | MTR_7g029400 | 40.404 | 99 | 53 | 1 | 169 | 267 | 64 | 156 | 1.51e-13 | 69.3 |
| MS.gene026023.t1 | MTR_6g016375 | 47.297 | 74 | 39 | 0 | 195 | 268 | 90 | 163 | 8.29e-13 | 67.4 |
| MS.gene026023.t1 | MTR_8g086020 | 35.484 | 93 | 60 | 0 | 192 | 284 | 32 | 124 | 2.68e-12 | 64.7 |
| MS.gene026023.t1 | MTR_1g022495 | 29.560 | 159 | 88 | 3 | 163 | 308 | 9 | 156 | 3.10e-12 | 64.7 |
| MS.gene026023.t1 | MTR_5g015090 | 37.500 | 112 | 64 | 2 | 156 | 267 | 28 | 133 | 2.14e-11 | 62.0 |
| MS.gene026023.t1 | MTR_7g017880 | 42.391 | 92 | 44 | 1 | 176 | 267 | 77 | 159 | 6.50e-11 | 61.6 |
| MS.gene026023.t1 | MTR_4g097440 | 32.895 | 152 | 88 | 5 | 119 | 267 | 7 | 147 | 6.61e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026023.t1 | AT5G28770 | 45.103 | 388 | 129 | 14 | 1 | 383 | 1 | 309 | 6.77e-70 | 223 |
| MS.gene026023.t1 | AT5G28770 | 44.792 | 384 | 129 | 14 | 1 | 383 | 1 | 302 | 5.68e-66 | 212 |
| MS.gene026023.t1 | AT5G28770 | 47.253 | 273 | 92 | 9 | 1 | 268 | 1 | 226 | 1.33e-51 | 173 |
| MS.gene026023.t1 | AT4G02640 | 37.920 | 327 | 145 | 8 | 1 | 284 | 1 | 312 | 8.46e-39 | 144 |
| MS.gene026023.t1 | AT4G02640 | 37.920 | 327 | 145 | 8 | 1 | 284 | 1 | 312 | 1.22e-38 | 143 |
| MS.gene026023.t1 | AT4G02640 | 37.383 | 321 | 149 | 7 | 1 | 284 | 1 | 306 | 2.42e-38 | 142 |
| MS.gene026023.t1 | AT4G02640 | 37.383 | 321 | 149 | 7 | 1 | 284 | 1 | 306 | 4.19e-38 | 142 |
| MS.gene026023.t1 | AT3G54620 | 33.947 | 380 | 165 | 12 | 1 | 324 | 1 | 350 | 4.50e-37 | 139 |
| MS.gene026023.t1 | AT5G24800 | 54.615 | 130 | 48 | 4 | 156 | 276 | 76 | 203 | 2.98e-33 | 125 |
| MS.gene026023.t1 | AT5G28770 | 42.735 | 234 | 82 | 9 | 1 | 229 | 1 | 187 | 3.65e-29 | 113 |
| MS.gene026023.t1 | AT3G54620 | 32.368 | 380 | 154 | 14 | 1 | 324 | 1 | 333 | 8.23e-25 | 105 |
| MS.gene026023.t1 | AT2G18160 | 40.476 | 84 | 50 | 0 | 191 | 274 | 27 | 110 | 4.31e-13 | 67.4 |
| MS.gene026023.t1 | AT2G04038 | 49.351 | 77 | 39 | 0 | 191 | 267 | 70 | 146 | 8.45e-13 | 66.6 |
| MS.gene026023.t1 | AT3G30530 | 39.394 | 99 | 56 | 1 | 169 | 267 | 59 | 153 | 9.36e-13 | 66.6 |
| MS.gene026023.t1 | AT1G75390 | 37.963 | 108 | 62 | 1 | 193 | 300 | 39 | 141 | 9.45e-13 | 66.6 |
| MS.gene026023.t1 | AT1G13600 | 38.384 | 99 | 54 | 1 | 169 | 267 | 67 | 158 | 1.53e-11 | 63.5 |
Find 78 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCTTCCCGATCTATTAT+TGG | 0.211521 | 7.1:+2234467 | None:intergenic |
| TATGTAGAATGCGGCCCTTC+TGG | 0.245369 | 7.1:-2235917 | MS.gene026023:intron |
| CTGAAATAACGGAGCAATAT+TGG | 0.250912 | 7.1:-2237101 | MS.gene026023:CDS |
| TATTGATTCTGAGGATTATC+AGG | 0.285549 | 7.1:-2236887 | MS.gene026023:CDS |
| ATTGTAACAGCAGGTTTCTT+TGG | 0.288769 | 7.1:+2235833 | None:intergenic |
| GAGACAGTTAAAAGATTTAC+TGG | 0.291659 | 7.1:-2234666 | MS.gene026023:CDS |
| CTCATGGCAATAGGGATCTT+TGG | 0.341962 | 7.1:-2236149 | MS.gene026023:intron |
| TTTCAGGATGCTCTCTAATA+GGG | 0.349365 | 7.1:-2235357 | MS.gene026023:intron |
| CCATCTTATCCTTCTGAACT+TGG | 0.355060 | 7.1:-2236094 | MS.gene026023:CDS |
| CCTGCCACGGGTGGCTAGCT+TGG | 0.382757 | 7.1:-2234376 | MS.gene026023:CDS |
| AAGATATCAAAGTTGCTGTT+GGG | 0.385646 | 7.1:-2235868 | MS.gene026023:CDS |
| GACATTAGATTATTAGATAA+GGG | 0.396715 | 7.1:+2234510 | None:intergenic |
| TCCTTCTGAACTTGGACCTC+TGG | 0.404582 | 7.1:-2236086 | MS.gene026023:CDS |
| ATTCTATCACTTGTCTTCTT+CGG | 0.406886 | 7.1:+2234323 | None:intergenic |
| TATTAGGTCTCTGAATTAAG+AGG | 0.422615 | 7.1:-2235167 | MS.gene026023:intron |
| GTTGAAGTTGAAGATGAAGA+AGG | 0.422904 | 7.1:+2236952 | None:intergenic |
| CCAAGCTAGCCACCCGTGGC+AGG | 0.428000 | 7.1:+2234376 | None:intergenic |
| GCAGCAGGTGGGAACAAGAT+AGG | 0.452428 | 7.1:-2234411 | MS.gene026023:CDS |
| ATGGGAATGTCATTATTTGA+TGG | 0.455802 | 7.1:-2234603 | MS.gene026023:CDS |
| GATGGCTGTGATCCATTGTC+AGG | 0.464580 | 7.1:+2236112 | None:intergenic |
| GAGATACAACAAAGATGAAT+CGG | 0.465070 | 7.1:-2237053 | MS.gene026023:CDS |
| GGGATCTTTGGTCAAATCTC+AGG | 0.465850 | 7.1:-2236137 | MS.gene026023:CDS |
| GGACATTAGATTATTAGATA+AGG | 0.466925 | 7.1:+2234509 | None:intergenic |
| AAAGATATCAAAGTTGCTGT+TGG | 0.482051 | 7.1:-2235869 | MS.gene026023:CDS |
| GAGGGAGAGATTAATATGAA+TGG | 0.483459 | 7.1:-2235770 | MS.gene026023:CDS |
| GGACCTCTGGCTACTTTGAA+AGG | 0.489971 | 7.1:-2236073 | MS.gene026023:intron |
| AATGTCTGAGGTATCATCAA+TGG | 0.491343 | 7.1:-2234622 | MS.gene026023:CDS |
| GGCGCAAGCAAGATCAAGCT+TGG | 0.492090 | 7.1:+2236852 | None:intergenic |
| GAATCGGAGTGATTCAGAAT+GGG | 0.499568 | 7.1:-2237037 | MS.gene026023:CDS |
| GTTATCAATTGCTGAAATAA+CGG | 0.504761 | 7.1:-2237112 | MS.gene026023:CDS |
| GCAGGTTTCTTTGGCATGCA+AGG | 0.507308 | 7.1:+2235842 | None:intergenic |
| ATGTCTGAGGTATCATCAAT+GGG | 0.509553 | 7.1:-2234621 | MS.gene026023:CDS |
| TTATTTGGATCTTCTTGCAC+AGG | 0.510884 | 7.1:+2234546 | None:intergenic |
| AGAGGAGCCAATAATAGATC+GGG | 0.512572 | 7.1:-2234474 | MS.gene026023:CDS |
| CAGAAGAACACCGCAGCAGG+TGG | 0.514294 | 7.1:-2234423 | MS.gene026023:CDS |
| GCGCCGCCGTCGCTAAGTCG+AGG | 0.516197 | 7.1:-2236834 | MS.gene026023:CDS |
| CGCCGCCGTCGCTAAGTCGA+GGG | 0.517985 | 7.1:-2236833 | MS.gene026023:intron |
| GAGAGGAGCCAATAATAGAT+CGG | 0.524926 | 7.1:-2234475 | MS.gene026023:CDS |
| GTTGACTTCGAAAGCGTGCA+AGG | 0.526678 | 7.1:-2237079 | MS.gene026023:CDS |
| GGCTCCTCTCATATCATGAC+TGG | 0.535600 | 7.1:+2234488 | None:intergenic |
| GTGCAGAAGAACACCGCAGC+AGG | 0.536590 | 7.1:-2234426 | MS.gene026023:CDS |
| CCAAGTTCAGAAGGATAAGA+TGG | 0.536978 | 7.1:+2236094 | None:intergenic |
| CAATAATAGTATTGATTCTG+AGG | 0.537078 | 7.1:-2236896 | MS.gene026023:CDS |
| TGAATCGGAGTGATTCAGAA+TGG | 0.537101 | 7.1:-2237038 | MS.gene026023:CDS |
| AGATATCAAAGTTGCTGTTG+GGG | 0.538293 | 7.1:-2235867 | MS.gene026023:CDS |
| ACAATCAAGTCAACAACAAG+TGG | 0.544242 | 7.1:-2235815 | MS.gene026023:CDS |
| GCCAGAGGTCCAAGTTCAGA+AGG | 0.550767 | 7.1:+2236085 | None:intergenic |
| CATCTTCAGAGTCGAATTCG+TGG | 0.551475 | 7.1:-2234351 | MS.gene026023:CDS |
| AACAAATTCCCTGCCACGGG+TGG | 0.555330 | 7.1:-2234385 | MS.gene026023:CDS |
| AAGATTTACTGGATCGAACC+CGG | 0.558877 | 7.1:-2234655 | MS.gene026023:CDS |
| CAAGCTAGCCACCCGTGGCA+GGG | 0.562427 | 7.1:+2234377 | None:intergenic |
| CAGACATTGCATTAAACACC+GGG | 0.574406 | 7.1:+2234637 | None:intergenic |
| TAGATGGATCGTTTCCAGAA+GGG | 0.575636 | 7.1:+2235903 | None:intergenic |
| ATCAGACGATGAGGAAGCTG+AGG | 0.576946 | 7.1:-2235789 | MS.gene026023:CDS |
| TTTAACTGAGCTTGAAACAC+AGG | 0.587276 | 7.1:-2235297 | MS.gene026023:intron |
| GTTGACTTGATTGTAACAGC+AGG | 0.587759 | 7.1:+2235824 | None:intergenic |
| ACGAACAAATTCCCTGCCAC+GGG | 0.590000 | 7.1:-2234388 | MS.gene026023:CDS |
| TTAGATGGATCGTTTCCAGA+AGG | 0.592645 | 7.1:+2235902 | None:intergenic |
| ACTTCGAAAGCGTGCAAGGG+AGG | 0.597046 | 7.1:-2237075 | MS.gene026023:CDS |
| TCAGACATTGCATTAAACAC+CGG | 0.598502 | 7.1:+2234636 | None:intergenic |
| AAATCTCAGGATCCTGACAA+TGG | 0.601386 | 7.1:-2236124 | MS.gene026023:CDS |
| GACGAACAAATTCCCTGCCA+CGG | 0.607260 | 7.1:-2234389 | MS.gene026023:CDS |
| TGTTGAAACATTAAGAGCAA+AGG | 0.611502 | 7.1:-2235057 | MS.gene026023:intron |
| TATCTTGTTCCCACCTGCTG+CGG | 0.616019 | 7.1:+2234413 | None:intergenic |
| GCATCAGCTGATGACTCAGA+AGG | 0.620005 | 7.1:+2234576 | None:intergenic |
| TTGACTTCGAAAGCGTGCAA+GGG | 0.621528 | 7.1:-2237078 | MS.gene026023:CDS |
| CTGATGCAAAACGAGTAAGA+AGG | 0.637263 | 7.1:-2235733 | MS.gene026023:intron |
| TTTGAGATTGACATCAACGG+TGG | 0.645017 | 7.1:+2236921 | None:intergenic |
| TCAGACGATGAGGAAGCTGA+GGG | 0.659901 | 7.1:-2235788 | MS.gene026023:CDS |
| ATGTCCAGTCATGATATGAG+AGG | 0.664118 | 7.1:-2234492 | MS.gene026023:CDS |
| GGTGTTTAATGCAATGTCTG+AGG | 0.664829 | 7.1:-2234634 | MS.gene026023:CDS |
| AGAAGAACACCGCAGCAGGT+GGG | 0.666761 | 7.1:-2234422 | MS.gene026023:CDS |
| AAGTGGATCATCAGACGATG+AGG | 0.668470 | 7.1:-2235798 | MS.gene026023:CDS |
| TGTTCCAAGCTAGCCACCCG+TGG | 0.670248 | 7.1:+2234372 | None:intergenic |
| TACCCTCGACTTAGCGACGG+CGG | 0.681240 | 7.1:+2236831 | None:intergenic |
| AAACCTTTCAAAGTAGCCAG+AGG | 0.696494 | 7.1:+2236070 | None:intergenic |
| ATATACCCTCGACTTAGCGA+CGG | 0.708838 | 7.1:+2236828 | None:intergenic |
| CTTCAGAGTCGAATTCGTGG+TGG | 0.718456 | 7.1:-2234348 | MS.gene026023:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATATTCTATCTTATT+AGG | - | chr7.1:2236269-2236288 | MS.gene026023:intron | 10.0% |
| !! | TGTATAAAATACTTAATTCA+GGG | + | chr7.1:2236046-2236065 | None:intergenic | 15.0% |
| !! | TTGTATAAAATACTTAATTC+AGG | + | chr7.1:2236047-2236066 | None:intergenic | 15.0% |
| !!! | AATATAGCTTTTGAATATTA+CGG | + | chr7.1:2234773-2234792 | None:intergenic | 15.0% |
| !!! | ATAAGTTATTTCTATAATCA+AGG | + | chr7.1:2235986-2236005 | None:intergenic | 15.0% |
| !!! | TCTTTATTTTGTAATTTAGA+TGG | + | chr7.1:2235568-2235587 | None:intergenic | 15.0% |
| !! | AAAAACGAGAACAATATAAA+GGG | + | chr7.1:2236748-2236767 | None:intergenic | 20.0% |
| !! | GACATTAGATTATTAGATAA+GGG | + | chr7.1:2236945-2236964 | None:intergenic | 20.0% |
| !! | TAAAAACGAGAACAATATAA+AGG | + | chr7.1:2236749-2236768 | None:intergenic | 20.0% |
| !! | TTAATTCTGTCAACATATAT+GGG | + | chr7.1:2234933-2234952 | None:intergenic | 20.0% |
| !! | TTTAATTCTGTCAACATATA+TGG | + | chr7.1:2234934-2234953 | None:intergenic | 20.0% |
| !!! | AGTAGATCACAATTTTTTAA+GGG | - | chr7.1:2235485-2235504 | MS.gene026023:intron | 20.0% |
| !!! | TAGTAGATCACAATTTTTTA+AGG | - | chr7.1:2235484-2235503 | MS.gene026023:intron | 20.0% |
| !!! | TTATATTGTTCTCGTTTTTA+AGG | - | chr7.1:2236749-2236768 | MS.gene026023:intron | 20.0% |
| !!! | TTTTATTCATATGTAGAATG+CGG | - | chr7.1:2235526-2235545 | MS.gene026023:intron | 20.0% |
| ! | AAACATGGTAAATACATTGA+AGG | - | chr7.1:2235455-2235474 | MS.gene026023:intron | 25.0% |
| ! | AAACTATCATAGAGATTTCA+CGG | + | chr7.1:2235915-2235934 | None:intergenic | 25.0% |
| ! | AACACTTGAGAAATTATTTG+AGG | - | chr7.1:2235842-2235861 | MS.gene026023:CDS | 25.0% |
| ! | AACATGGTAAATACATTGAA+GGG | - | chr7.1:2235456-2235475 | MS.gene026023:intron | 25.0% |
| ! | AACTACTTTACTAGTAAAAC+TGG | - | chr7.1:2236432-2236451 | MS.gene026023:intron | 25.0% |
| ! | ACACATAAATCAATTGGAAA+TGG | + | chr7.1:2236695-2236714 | None:intergenic | 25.0% |
| ! | ACACTTGAGAAATTATTTGA+GGG | - | chr7.1:2235843-2235862 | MS.gene026023:CDS | 25.0% |
| ! | ATTTGAACGACTAATTAAGA+TGG | + | chr7.1:2236239-2236258 | None:intergenic | 25.0% |
| ! | GGACATTAGATTATTAGATA+AGG | + | chr7.1:2236946-2236965 | None:intergenic | 25.0% |
| ! | GGTTGAAAAAAGTGATTATT+TGG | + | chr7.1:2236924-2236943 | None:intergenic | 25.0% |
| ! | GTTATCAATTGCTGAAATAA+CGG | - | chr7.1:2234340-2234359 | MS.gene026023:CDS | 25.0% |
| ! | TCAAATTAGTCAATCTAAAC+AGG | + | chr7.1:2235805-2235824 | None:intergenic | 25.0% |
| !! | AGCAGAATTGTTGAATTTTT+GGG | + | chr7.1:2236349-2236368 | None:intergenic | 25.0% |
| !! | ATGTTTTCTTTTACTACTCA+TGG | - | chr7.1:2235287-2235306 | MS.gene026023:intron | 25.0% |
| !! | ATTTTGCAAAAGAAATCTTC+TGG | - | chr7.1:2235752-2235771 | MS.gene026023:CDS | 25.0% |
| !! | TCCAATTGATTTATGTGTAT+TGG | - | chr7.1:2236697-2236716 | MS.gene026023:intron | 25.0% |
| !!! | CAATAATAGTATTGATTCTG+AGG | - | chr7.1:2234556-2234575 | MS.gene026023:CDS | 25.0% |
| !!! | CTTTTGGAAAAAAAAATGCA+TGG | + | chr7.1:2234687-2234706 | None:intergenic | 25.0% |
| !!! | TAGTTTTGATTCTTCAAAGT+TGG | - | chr7.1:2235209-2235228 | MS.gene026023:intron | 25.0% |
| AAAGATATCAAAGTTGCTGT+TGG | - | chr7.1:2235583-2235602 | MS.gene026023:intron | 30.0% | |
| AACTATCATAGAGATTTCAC+GGG | + | chr7.1:2235914-2235933 | None:intergenic | 30.0% | |
| ATGGGAATGTCATTATTTGA+TGG | - | chr7.1:2236849-2236868 | MS.gene026023:CDS | 30.0% | |
| ATGTGACTTTGGTAAAATCA+CGG | + | chr7.1:2234883-2234902 | None:intergenic | 30.0% | |
| GAGACAGTTAAAAGATTTAC+TGG | - | chr7.1:2236786-2236805 | MS.gene026023:intron | 30.0% | |
| GAGATACAACAAAGATGAAT+CGG | - | chr7.1:2234399-2234418 | MS.gene026023:CDS | 30.0% | |
| GCCAATACACATAAATCAAT+TGG | + | chr7.1:2236701-2236720 | None:intergenic | 30.0% | |
| GTTTATTATCGATGTGACTT+TGG | + | chr7.1:2234894-2234913 | None:intergenic | 30.0% | |
| TACGTGTATGTTTGGATATT+CGG | - | chr7.1:2234728-2234747 | MS.gene026023:intron | 30.0% | |
| TATTAGGTCTCTGAATTAAG+AGG | - | chr7.1:2236285-2236304 | MS.gene026023:intron | 30.0% | |
| TGTTGAAACATTAAGAGCAA+AGG | - | chr7.1:2236395-2236414 | MS.gene026023:intron | 30.0% | |
| ! | AAGATATCAAAGTTGCTGTT+GGG | - | chr7.1:2235584-2235603 | MS.gene026023:intron | 30.0% |
| ! | ATAGCTTTTGAATATTACGG+TGG | + | chr7.1:2234770-2234789 | None:intergenic | 30.0% |
| ! | CACAATTTTACGTGTATGTT+TGG | - | chr7.1:2234720-2234739 | MS.gene026023:intron | 30.0% |
| ! | CAGCAGAATTGTTGAATTTT+TGG | + | chr7.1:2236350-2236369 | None:intergenic | 30.0% |
| ! | GTGTGCATATGTTAATCTTT+TGG | + | chr7.1:2234703-2234722 | None:intergenic | 30.0% |
| ! | GTTGTTCACGTAAAAACTTT+TGG | + | chr7.1:2234445-2234464 | None:intergenic | 30.0% |
| ! | TTTTACTACTCATGGCAATA+GGG | - | chr7.1:2235295-2235314 | MS.gene026023:intron | 30.0% |
| !! | ATTAATTTGCGAAATTGGGA+TGG | - | chr7.1:2234853-2234872 | MS.gene026023:intron | 30.0% |
| !! | TATTGATTCTGAGGATTATC+AGG | - | chr7.1:2234565-2234584 | MS.gene026023:CDS | 30.0% |
| !!! | GATTTTGAGATTGACATCAA+CGG | + | chr7.1:2234537-2234556 | None:intergenic | 30.0% |
| AAACATGCACAAAATCACGA+TGG | + | chr7.1:2234820-2234839 | None:intergenic | 35.0% | |
| AAATTATTTGAGGGAGATCG+TGG | - | chr7.1:2235852-2235871 | MS.gene026023:CDS | 35.0% | |
| AAGCTTAGATGAAAACCTAG+TGG | + | chr7.1:2235080-2235099 | None:intergenic | 35.0% | |
| AATGCTTCCCGATCTATTAT+TGG | + | chr7.1:2236988-2237007 | None:intergenic | 35.0% | |
| ACAATCAAGTCAACAACAAG+TGG | - | chr7.1:2235637-2235656 | MS.gene026023:intron | 35.0% | |
| ACTAATTAACAAGCACTCCT+TGG | + | chr7.1:2235139-2235158 | None:intergenic | 35.0% | |
| AGAAGAGAATGCAGAAGAAA+TGG | + | chr7.1:2236203-2236222 | None:intergenic | 35.0% | |
| AGTTTACACAGTCAGTACAT+TGG | - | chr7.1:2236506-2236525 | MS.gene026023:intron | 35.0% | |
| ATTGTAACAGCAGGTTTCTT+TGG | + | chr7.1:2235622-2235641 | None:intergenic | 35.0% | |
| CTAATTAACAAGCACTCCTT+GGG | + | chr7.1:2235138-2235157 | None:intergenic | 35.0% | |
| GAATGCATGAATCATGCAAT+TGG | + | chr7.1:2235058-2235077 | None:intergenic | 35.0% | |
| GAGGGAGAGATTAATATGAA+TGG | - | chr7.1:2235682-2235701 | MS.gene026023:intron | 35.0% | |
| GGTAAATACATTGAAGGGAA+AGG | - | chr7.1:2235461-2235480 | MS.gene026023:intron | 35.0% | |
| GTGACTGCTTAGATTAAGAT+CGG | - | chr7.1:2236528-2236547 | MS.gene026023:intron | 35.0% | |
| GTGCATGTTTGATATTACAG+CGG | - | chr7.1:2234830-2234849 | MS.gene026023:intron | 35.0% | |
| GTTATAGAAGCCTACTACTT+GGG | - | chr7.1:2236454-2236473 | MS.gene026023:intron | 35.0% | |
| GTTGAAGTTGAAGATGAAGA+AGG | + | chr7.1:2234503-2234522 | None:intergenic | 35.0% | |
| TCAGACATTGCATTAAACAC+CGG | + | chr7.1:2236819-2236838 | None:intergenic | 35.0% | |
| TCCAAACAATTATCAACCCA+AGG | - | chr7.1:2235119-2235138 | MS.gene026023:CDS | 35.0% | |
| TCCTGAAAAGCAATGTCATA+AGG | + | chr7.1:2236083-2236102 | None:intergenic | 35.0% | |
| TGGATATTCGGTCAAAATCA+CGG | - | chr7.1:2234740-2234759 | MS.gene026023:intron | 35.0% | |
| TGTCTGCATATGTGAAAACA+TGG | - | chr7.1:2235440-2235459 | MS.gene026023:intron | 35.0% | |
| TTATTTGGATCTTCTTGCAC+AGG | + | chr7.1:2236909-2236928 | None:intergenic | 35.0% | |
| TTTAACTGAGCTTGAAACAC+AGG | - | chr7.1:2236155-2236174 | MS.gene026023:intron | 35.0% | |
| TTTCAGGATGCTCTCTAATA+GGG | - | chr7.1:2236095-2236114 | MS.gene026023:CDS | 35.0% | |
| ! | AAGCAATGTCATAAGGCATT+AGG | + | chr7.1:2236076-2236095 | None:intergenic | 35.0% |
| ! | AATGTCTGAGGTATCATCAA+TGG | - | chr7.1:2236830-2236849 | MS.gene026023:intron | 35.0% |
| ! | AATTGGAAATGGATTCCTTC+TGG | + | chr7.1:2236684-2236703 | None:intergenic | 35.0% |
| ! | AGATATCAAAGTTGCTGTTG+GGG | - | chr7.1:2235585-2235604 | MS.gene026023:intron | 35.0% |
| ! | ATGTCTGAGGTATCATCAAT+GGG | - | chr7.1:2236831-2236850 | MS.gene026023:intron | 35.0% |
| ! | CTGAAATAACGGAGCAATAT+TGG | - | chr7.1:2234351-2234370 | MS.gene026023:CDS | 35.0% |
| ! | CTTTTACTACTCATGGCAAT+AGG | - | chr7.1:2235294-2235313 | MS.gene026023:intron | 35.0% |
| !! | AGCGGATTAATTTGCGAAAT+TGG | - | chr7.1:2234848-2234867 | MS.gene026023:intron | 35.0% |
| !! | GCGGATTAATTTGCGAAATT+GGG | - | chr7.1:2234849-2234868 | MS.gene026023:intron | 35.0% |
| !! | TCCTTGGGTTGATAATTGTT+TGG | + | chr7.1:2235123-2235142 | None:intergenic | 35.0% |
| !! | TTTTCAGGATGCTCTCTAAT+AGG | - | chr7.1:2236094-2236113 | MS.gene026023:CDS | 35.0% |
| !!! | TCTCGTTTTTAAGGTGAAGA+TGG | - | chr7.1:2236758-2236777 | MS.gene026023:intron | 35.0% |
| AAACCTTTCAAAGTAGCCAG+AGG | + | chr7.1:2235385-2235404 | None:intergenic | 40.0% | |
| AAATCTCAGGATCCTGACAA+TGG | - | chr7.1:2235328-2235347 | MS.gene026023:CDS | 40.0% | |
| AAGATTTACTGGATCGAACC+CGG | - | chr7.1:2236797-2236816 | MS.gene026023:intron | 40.0% | |
| ACTAGCTAGCACTTGTTCTA+AGG | + | chr7.1:2234980-2234999 | None:intergenic | 40.0% | |
| AGAATCTTGACCCAAGTAGT+AGG | + | chr7.1:2236467-2236486 | None:intergenic | 40.0% | |
| AGAGGAGCCAATAATAGATC+GGG | - | chr7.1:2236978-2236997 | MS.gene026023:CDS | 40.0% | |
| ATGTCCAGTCATGATATGAG+AGG | - | chr7.1:2236960-2236979 | MS.gene026023:CDS | 40.0% | |
| CAGACATTGCATTAAACACC+GGG | + | chr7.1:2236818-2236837 | None:intergenic | 40.0% | |
| CATGATTCATGCATTCCACT+AGG | - | chr7.1:2235062-2235081 | MS.gene026023:CDS | 40.0% | |
| CCAAGTTCAGAAGGATAAGA+TGG | + | chr7.1:2235361-2235380 | None:intergenic | 40.0% | |
| CCATCTTATCCTTCTGAACT+TGG | - | chr7.1:2235358-2235377 | MS.gene026023:intron | 40.0% | |
| CTGATGCAAAACGAGTAAGA+AGG | - | chr7.1:2235719-2235738 | MS.gene026023:intron | 40.0% | |
| GAATCGGAGTGATTCAGAAT+GGG | - | chr7.1:2234415-2234434 | MS.gene026023:CDS | 40.0% | |
| GAGAGGAGCCAATAATAGAT+CGG | - | chr7.1:2236977-2236996 | MS.gene026023:CDS | 40.0% | |
| GGTGTTTAATGCAATGTCTG+AGG | - | chr7.1:2236818-2236837 | MS.gene026023:intron | 40.0% | |
| GGTTACTACTGGATTCAGAT+CGG | + | chr7.1:2236627-2236646 | None:intergenic | 40.0% | |
| GGTTATAGAAGCCTACTACT+TGG | - | chr7.1:2236453-2236472 | MS.gene026023:intron | 40.0% | |
| TAGATGGATCGTTTCCAGAA+GGG | + | chr7.1:2235552-2235571 | None:intergenic | 40.0% | |
| TGAATCGGAGTGATTCAGAA+TGG | - | chr7.1:2234414-2234433 | MS.gene026023:CDS | 40.0% | |
| TTAGATGGATCGTTTCCAGA+AGG | + | chr7.1:2235553-2235572 | None:intergenic | 40.0% | |
| ! | ACTCGTTTTGCATCAGTAGT+AGG | + | chr7.1:2235715-2235734 | None:intergenic | 40.0% |
| ! | CTCGTTTTGCATCAGTAGTA+GGG | + | chr7.1:2235714-2235733 | None:intergenic | 40.0% |
| ! | GATTCCTTCTGGTTGGAATA+TGG | + | chr7.1:2236673-2236692 | None:intergenic | 40.0% |
| ! | TTTGAGATTGACATCAACGG+TGG | + | chr7.1:2234534-2234553 | None:intergenic | 40.0% |
| !! | ACTTGTTCTAAGGTAGGAGA+AGG | + | chr7.1:2234970-2234989 | None:intergenic | 40.0% |
| !! | GCCTTATGACATTGCTTTTC+AGG | - | chr7.1:2236079-2236098 | MS.gene026023:CDS | 40.0% |
| !! | GTACTGACTGTGTAAACTCA+AGG | + | chr7.1:2236504-2236523 | None:intergenic | 40.0% |
| !! | GTTGACTTGATTGTAACAGC+AGG | + | chr7.1:2235631-2235650 | None:intergenic | 40.0% |
| AAGTGGATCATCAGACGATG+AGG | - | chr7.1:2235654-2235673 | MS.gene026023:intron | 45.0% | |
| ATATACCCTCGACTTAGCGA+CGG | + | chr7.1:2234627-2234646 | None:intergenic | 45.0% | |
| CATCTTCAGAGTCGAATTCG+TGG | - | chr7.1:2237101-2237120 | MS.gene026023:CDS | 45.0% | |
| CTCATGGCAATAGGGATCTT+TGG | - | chr7.1:2235303-2235322 | MS.gene026023:CDS | 45.0% | |
| GGATGCTTGAGATTCAACCT+CGG | - | chr7.1:2236549-2236568 | MS.gene026023:intron | 45.0% | |
| GGGATCTTTGGTCAAATCTC+AGG | - | chr7.1:2235315-2235334 | MS.gene026023:CDS | 45.0% | |
| ! | GGAAATGGATTCCTTCTGGT+TGG | + | chr7.1:2236680-2236699 | None:intergenic | 45.0% |
| ! | TTGACTTCGAAAGCGTGCAA+GGG | - | chr7.1:2234374-2234393 | MS.gene026023:CDS | 45.0% |
| !! | GCTAGCACTTGTTCTAAGGT+AGG | + | chr7.1:2234976-2234995 | None:intergenic | 45.0% |
| ACGAACAAATTCCCTGCCAC+GGG | - | chr7.1:2237064-2237083 | MS.gene026023:CDS | 50.0% | |
| AGTCAGGCAAGGGTTACTAC+TGG | + | chr7.1:2236638-2236657 | None:intergenic | 50.0% | |
| ATCAGACGATGAGGAAGCTG+AGG | - | chr7.1:2235663-2235682 | MS.gene026023:intron | 50.0% | |
| ATTCAACCTCGGTGGTGCTT+TGG | - | chr7.1:2236560-2236579 | MS.gene026023:intron | 50.0% | |
| CCAGCCATATTCCAACCAGA+AGG | - | chr7.1:2236666-2236685 | MS.gene026023:intron | 50.0% | |
| CTTCAGAGTCGAATTCGTGG+TGG | - | chr7.1:2237104-2237123 | MS.gene026023:CDS | 50.0% | |
| GACGAACAAATTCCCTGCCA+CGG | - | chr7.1:2237063-2237082 | MS.gene026023:CDS | 50.0% | |
| GATGGCTGTGATCCATTGTC+AGG | + | chr7.1:2235343-2235362 | None:intergenic | 50.0% | |
| GCAGGTTTCTTTGGCATGCA+AGG | + | chr7.1:2235613-2235632 | None:intergenic | 50.0% | |
| GCATCAGCTGATGACTCAGA+AGG | + | chr7.1:2236879-2236898 | None:intergenic | 50.0% | |
| GGCTCCTCTCATATCATGAC+TGG | + | chr7.1:2236967-2236986 | None:intergenic | 50.0% | |
| TATCTTGTTCCCACCTGCTG+CGG | + | chr7.1:2237042-2237061 | None:intergenic | 50.0% | |
| TATGTAGAATGCGGCCCTTC+TGG | - | chr7.1:2235535-2235554 | MS.gene026023:intron | 50.0% | |
| TCAGACGATGAGGAAGCTGA+GGG | - | chr7.1:2235664-2235683 | MS.gene026023:intron | 50.0% | |
| TCCTTCTGAACTTGGACCTC+TGG | - | chr7.1:2235366-2235385 | MS.gene026023:intron | 50.0% | |
| TGCTTGAGATTCAACCTCGG+TGG | - | chr7.1:2236552-2236571 | MS.gene026023:intron | 50.0% | |
| ! | CCTTCTGGTTGGAATATGGC+TGG | + | chr7.1:2236669-2236688 | None:intergenic | 50.0% |
| ! | GAAAATCCAAAGCACCACCG+AGG | + | chr7.1:2236569-2236588 | None:intergenic | 50.0% |
| ! | GGACCTCTGGCTACTTTGAA+AGG | - | chr7.1:2235379-2235398 | MS.gene026023:intron | 50.0% |
| ! | GTTGACTTCGAAAGCGTGCA+AGG | - | chr7.1:2234373-2234392 | MS.gene026023:CDS | 50.0% |
| AACAAATTCCCTGCCACGGG+TGG | - | chr7.1:2237067-2237086 | MS.gene026023:CDS | 55.0% | |
| AGAAGAACACCGCAGCAGGT+GGG | - | chr7.1:2237030-2237049 | MS.gene026023:CDS | 55.0% | |
| ATGGCTGGATTCACGCAGTC+AGG | + | chr7.1:2236654-2236673 | None:intergenic | 55.0% | |
| GCAGCAGGTGGGAACAAGAT+AGG | - | chr7.1:2237041-2237060 | MS.gene026023:CDS | 55.0% | |
| GCCAGAGGTCCAAGTTCAGA+AGG | + | chr7.1:2235370-2235389 | None:intergenic | 55.0% | |
| GGATTCACGCAGTCAGGCAA+GGG | + | chr7.1:2236648-2236667 | None:intergenic | 55.0% | |
| GGCGCAAGCAAGATCAAGCT+TGG | + | chr7.1:2234603-2234622 | None:intergenic | 55.0% | |
| TGGATTCACGCAGTCAGGCA+AGG | + | chr7.1:2236649-2236668 | None:intergenic | 55.0% | |
| ! | ACTTCGAAAGCGTGCAAGGG+AGG | - | chr7.1:2234377-2234396 | MS.gene026023:CDS | 55.0% |
| CAGAAGAACACCGCAGCAGG+TGG | - | chr7.1:2237029-2237048 | MS.gene026023:CDS | 60.0% | |
| GTGCAGAAGAACACCGCAGC+AGG | - | chr7.1:2237026-2237045 | MS.gene026023:CDS | 60.0% | |
| TACCCTCGACTTAGCGACGG+CGG | + | chr7.1:2234624-2234643 | None:intergenic | 60.0% | |
| TGTTCCAAGCTAGCCACCCG+TGG | + | chr7.1:2237083-2237102 | None:intergenic | 60.0% | |
| CAAGCTAGCCACCCGTGGCA+GGG | + | chr7.1:2237078-2237097 | None:intergenic | 65.0% | |
| CCAAGCTAGCCACCCGTGGC+AGG | + | chr7.1:2237079-2237098 | None:intergenic | 70.0% | |
| CGCCGCCGTCGCTAAGTCGA+GGG | - | chr7.1:2234619-2234638 | MS.gene026023:CDS | 70.0% | |
| ! | CCTGCCACGGGTGGCTAGCT+TGG | - | chr7.1:2237076-2237095 | MS.gene026023:CDS | 70.0% |
| GCGCCGCCGTCGCTAAGTCG+AGG | - | chr7.1:2234618-2234637 | MS.gene026023:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 2234329 | 2237145 | 2234329 | ID=MS.gene026023 |
| chr7.1 | mRNA | 2234329 | 2237145 | 2234329 | ID=MS.gene026023.t1;Parent=MS.gene026023 |
| chr7.1 | exon | 2236834 | 2237145 | 2236834 | ID=MS.gene026023.t1.exon1;Parent=MS.gene026023.t1 |
| chr7.1 | CDS | 2236834 | 2237145 | 2236834 | ID=cds.MS.gene026023.t1;Parent=MS.gene026023.t1 |
| chr7.1 | exon | 2236074 | 2236158 | 2236074 | ID=MS.gene026023.t1.exon2;Parent=MS.gene026023.t1 |
| chr7.1 | CDS | 2236074 | 2236158 | 2236074 | ID=cds.MS.gene026023.t1;Parent=MS.gene026023.t1 |
| chr7.1 | exon | 2235734 | 2235932 | 2235734 | ID=MS.gene026023.t1.exon3;Parent=MS.gene026023.t1 |
| chr7.1 | CDS | 2235734 | 2235932 | 2235734 | ID=cds.MS.gene026023.t1;Parent=MS.gene026023.t1 |
| chr7.1 | exon | 2235298 | 2235373 | 2235298 | ID=MS.gene026023.t1.exon4;Parent=MS.gene026023.t1 |
| chr7.1 | CDS | 2235298 | 2235373 | 2235298 | ID=cds.MS.gene026023.t1;Parent=MS.gene026023.t1 |
| chr7.1 | exon | 2235058 | 2235183 | 2235058 | ID=MS.gene026023.t1.exon5;Parent=MS.gene026023.t1 |
| chr7.1 | CDS | 2235058 | 2235183 | 2235058 | ID=cds.MS.gene026023.t1;Parent=MS.gene026023.t1 |
| chr7.1 | exon | 2234329 | 2234703 | 2234329 | ID=MS.gene026023.t1.exon6;Parent=MS.gene026023.t1 |
| chr7.1 | CDS | 2234329 | 2234703 | 2234329 | ID=cds.MS.gene026023.t1;Parent=MS.gene026023.t1 |
| Gene Sequence |
| Protein sequence |
