Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026061.t1 | XP_003626394.1 | 85 | 441 | 60 | 3 | 1 | 435 | 1 | 441 | 1.40E-135 | 493 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026061.t1 | F4K5T4 | 37.8 | 400 | 185 | 9 | 45 | 429 | 73 | 423 | 3.9e-54 | 213.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026061.t1 | G7L0U1 | 85.0 | 441 | 60 | 3 | 1 | 435 | 1 | 441 | 1.0e-135 | 493.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene026061.t1 | TF | GeBP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026061.t1 | MTR_7g114600 | 95.023 | 442 | 14 | 4 | 1 | 435 | 1 | 441 | 0.0 | 850 |
| MS.gene026061.t1 | MTR_1g081580 | 43.377 | 385 | 140 | 13 | 54 | 427 | 53 | 370 | 4.85e-76 | 242 |
| MS.gene026061.t1 | MTR_1g081560 | 50.000 | 106 | 45 | 3 | 101 | 201 | 127 | 229 | 9.37e-25 | 105 |
| MS.gene026061.t1 | MTR_1g081560 | 39.815 | 108 | 46 | 4 | 323 | 428 | 282 | 372 | 5.36e-13 | 70.5 |
| MS.gene026061.t1 | MTR_1g081570 | 52.874 | 87 | 26 | 1 | 112 | 198 | 28 | 99 | 9.99e-21 | 87.0 |
| MS.gene026061.t1 | MTR_3g070120 | 33.929 | 112 | 66 | 2 | 106 | 217 | 153 | 256 | 2.84e-14 | 74.3 |
| MS.gene026061.t1 | MTR_2g010790 | 34.615 | 104 | 58 | 2 | 100 | 203 | 198 | 291 | 8.88e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026061.t1 | AT5G28040 | 39.323 | 473 | 193 | 15 | 1 | 429 | 1 | 423 | 6.40e-87 | 271 |
| MS.gene026061.t1 | AT5G28040 | 39.323 | 473 | 193 | 15 | 1 | 429 | 1 | 423 | 6.40e-87 | 271 |
| MS.gene026061.t1 | AT3G04930 | 63.030 | 165 | 50 | 5 | 45 | 207 | 86 | 241 | 6.24e-60 | 201 |
| MS.gene026061.t1 | AT3G04930 | 63.030 | 165 | 50 | 5 | 45 | 207 | 86 | 241 | 4.38e-59 | 200 |
| MS.gene026061.t1 | AT3G04930 | 37.584 | 149 | 60 | 6 | 305 | 429 | 313 | 452 | 1.09e-15 | 79.3 |
| MS.gene026061.t1 | AT4G00390 | 36.420 | 162 | 80 | 5 | 40 | 200 | 108 | 247 | 1.37e-19 | 90.1 |
| MS.gene026061.t1 | AT1G61730 | 36.486 | 148 | 78 | 4 | 53 | 200 | 114 | 245 | 1.47e-19 | 90.1 |
| MS.gene026061.t1 | AT4G01260 | 36.181 | 199 | 102 | 8 | 39 | 215 | 36 | 231 | 4.25e-19 | 88.2 |
| MS.gene026061.t1 | AT1G11510 | 39.535 | 129 | 71 | 3 | 78 | 202 | 106 | 231 | 9.18e-19 | 87.8 |
| MS.gene026061.t1 | AT1G11510 | 40.777 | 103 | 58 | 1 | 100 | 202 | 103 | 202 | 1.19e-18 | 87.0 |
| MS.gene026061.t1 | AT4G25210 | 36.641 | 131 | 69 | 4 | 84 | 201 | 110 | 239 | 2.88e-17 | 83.6 |
| MS.gene026061.t1 | AT1G44810 | 36.066 | 122 | 68 | 2 | 91 | 208 | 107 | 222 | 1.04e-15 | 77.8 |
| MS.gene026061.t1 | AT2G01370 | 38.614 | 101 | 57 | 3 | 101 | 199 | 74 | 171 | 1.41e-14 | 73.9 |
| MS.gene026061.t1 | AT4G00610 | 32.520 | 123 | 71 | 3 | 80 | 199 | 120 | 233 | 5.29e-13 | 70.1 |
| MS.gene026061.t1 | AT2G25650 | 33.684 | 95 | 63 | 0 | 105 | 199 | 64 | 158 | 2.18e-11 | 65.9 |
| MS.gene026061.t1 | AT5G14280 | 30.526 | 95 | 66 | 0 | 108 | 202 | 63 | 157 | 7.55e-11 | 63.5 |
Find 91 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGGAAGCAACAGATTT+TGG | 0.165742 | 7.1:+2367933 | MS.gene026061:CDS |
| CCGTTTCAGACGATGAATTT+AGG | 0.215452 | 7.1:+2367880 | MS.gene026061:CDS |
| GAGTTGTTTATCGCCGTTTA+AGG | 0.229902 | 7.1:+2367789 | MS.gene026061:CDS |
| TCCGTCACCGTCGCCGTTCC+CGG | 0.291496 | 7.1:+2366902 | MS.gene026061:CDS |
| CAGACGATGAATTTAGGTTT+TGG | 0.306437 | 7.1:+2367886 | MS.gene026061:CDS |
| GTAGCATAAGCATTAGGATT+AGG | 0.338681 | 7.1:-2367619 | None:intergenic |
| TTGATCCAAACGTTGACGTT+TGG | 0.362708 | 7.1:-2366993 | None:intergenic |
| GCAGTTGTAGCATAAGCATT+AGG | 0.365701 | 7.1:-2367625 | None:intergenic |
| ACGGGAGTGAAATTGAGGTT+AGG | 0.366561 | 7.1:-2367415 | None:intergenic |
| CATCTTCTTCTTCGTATTCG+TGG | 0.373161 | 7.1:-2366811 | None:intergenic |
| GCAGCATTAGTATTAACATT+AGG | 0.376257 | 7.1:-2367685 | None:intergenic |
| CGATTCCAAACGTCAACGTT+TGG | 0.378466 | 7.1:+2366988 | MS.gene026061:CDS |
| TGTATTTCTTCTTCAACCTT+CGG | 0.381493 | 7.1:-2367228 | None:intergenic |
| AGTAATAATTGTAGTACTGC+TGG | 0.385802 | 7.1:+2367730 | MS.gene026061:CDS |
| TTGTGATTAGGATAGGGATT+AGG | 0.391090 | 7.1:-2367583 | None:intergenic |
| CAAACGTTGACGTTTGGAAT+CGG | 0.393384 | 7.1:-2366987 | None:intergenic |
| GGAAGTGTATTCAAAGAGAT+TGG | 0.394682 | 7.1:+2367960 | MS.gene026061:CDS |
| ACATTAGGAGTAGTAATTGT+AGG | 0.395915 | 7.1:-2367670 | None:intergenic |
| CGGGAGTGAAATTGAGGTTA+GGG | 0.396355 | 7.1:-2367414 | None:intergenic |
| TTGAAATCTCTCGCAAGATC+TGG | 0.402112 | 7.1:+2367320 | MS.gene026061:CDS |
| TGGAGGTCTGAGAGCTCCTC+CGG | 0.404026 | 7.1:-2366921 | None:intergenic |
| GCAATGGGAGGAGGACTGTT+TGG | 0.407072 | 7.1:+2367826 | MS.gene026061:CDS |
| ATCGCCGTTTAAGGAATTGA+TGG | 0.410493 | 7.1:+2367798 | MS.gene026061:CDS |
| TTGTGATTGTGATTGTGATT+AGG | 0.420049 | 7.1:-2367595 | None:intergenic |
| GTAATTGTAGGTGTTATTGC+AGG | 0.422477 | 7.1:-2367658 | None:intergenic |
| GTTGCGGTTGGTGTTAGAAT+TGG | 0.424821 | 7.1:-2366941 | None:intergenic |
| CCAGCCATCAATTCCTTAAA+CGG | 0.436526 | 7.1:-2367802 | None:intergenic |
| GAGAATTGGTGGATGAGAAA+TGG | 0.440436 | 7.1:+2367914 | MS.gene026061:CDS |
| TTGAGGTTAGGGTTAGGACT+TGG | 0.440851 | 7.1:-2367403 | None:intergenic |
| GATGTCTTCTTCAGCGAAAA+CGG | 0.442070 | 7.1:-2366768 | None:intergenic |
| GTCGTGTTGCTGTGAAGCCA+TGG | 0.449941 | 7.1:-2366744 | None:intergenic |
| GTGAAATTGAGGTTAGGGTT+AGG | 0.470406 | 7.1:-2367409 | None:intergenic |
| GATGAATTGCGTTCAGTTGG+TGG | 0.477018 | 7.1:+2368015 | MS.gene026061:CDS |
| GAATTGATGGCTGGTGCAAT+GGG | 0.477602 | 7.1:+2367811 | MS.gene026061:CDS |
| GATAGGGATTAGGATTATTG+AGG | 0.478564 | 7.1:-2367573 | None:intergenic |
| CAACCACGCGGAAGCGTTCA+CGG | 0.479940 | 7.1:+2367461 | MS.gene026061:CDS |
| GCGGTTGGTGTTAGAATTGG+AGG | 0.483246 | 7.1:-2366938 | None:intergenic |
| GTTGAAATCGAGTTGAAGCT+TGG | 0.492100 | 7.1:-2367182 | None:intergenic |
| CCTAAATTCATCGTCTGAAA+CGG | 0.495889 | 7.1:-2367880 | None:intergenic |
| TTCGGATCTTCTCAACGAGC+TGG | 0.497082 | 7.1:-2367210 | None:intergenic |
| GGCGAAGATGATCGTGGTTG+CGG | 0.497664 | 7.1:-2366957 | None:intergenic |
| CTCAAAGCTTCTGATAGAAA+CGG | 0.498357 | 7.1:-2367491 | None:intergenic |
| TCCGGGAACGGCGACGGTGA+CGG | 0.500148 | 7.1:-2366903 | None:intergenic |
| GAATTACGGGAGTGAAATTG+AGG | 0.501359 | 7.1:-2367420 | None:intergenic |
| TCGTGTTGCTGTGAAGCCAT+GGG | 0.503258 | 7.1:-2366743 | None:intergenic |
| AGCTCCTCCGGGAACGGCGA+CGG | 0.517162 | 7.1:-2366909 | None:intergenic |
| TCAACGTTTGGATCAAATTG+AGG | 0.517701 | 7.1:+2367000 | MS.gene026061:CDS |
| GGCGACGGTGACGGAGGGAA+CGG | 0.527528 | 7.1:-2366894 | None:intergenic |
| ATAGTAACATCACCGGCGAT+TGG | 0.530842 | 7.1:-2367355 | None:intergenic |
| ACTGCTGGGAATGGTGTAGC+TGG | 0.532760 | 7.1:+2367745 | MS.gene026061:CDS |
| CCGTTTAAGGAATTGATGGC+TGG | 0.533833 | 7.1:+2367802 | MS.gene026061:CDS |
| ATGGCTGGTGCAATGGGAGG+AGG | 0.535572 | 7.1:+2367817 | MS.gene026061:CDS |
| GAGCAAAATGAGCTCTGGTA+AGG | 0.538676 | 7.1:+2367261 | MS.gene026061:CDS |
| CGTGAATCTTCAACCATAGG+TGG | 0.540544 | 7.1:-2367031 | None:intergenic |
| CTTGATGAATTGCGTTCAGT+TGG | 0.542946 | 7.1:+2368012 | MS.gene026061:CDS |
| ACGTTTGGAATCGGTTGAGT+CGG | 0.547440 | 7.1:-2366978 | None:intergenic |
| GTTGTGAGCAAAATGAGCTC+TGG | 0.549041 | 7.1:+2367256 | MS.gene026061:CDS |
| ATGGACCGACGAAGACGAGA+TGG | 0.549218 | 7.1:+2367072 | MS.gene026061:CDS |
| GGAATTGATGGCTGGTGCAA+TGG | 0.550630 | 7.1:+2367810 | MS.gene026061:CDS |
| GTAATAATTGTAGTACTGCT+GGG | 0.552619 | 7.1:+2367731 | MS.gene026061:CDS |
| ATTGTGATTGTGATTAGGAT+AGG | 0.560354 | 7.1:-2367590 | None:intergenic |
| TTGCGTGAATCTTCAACCAT+AGG | 0.563271 | 7.1:-2367034 | None:intergenic |
| CTTGCGAGAGATTTCAAACG+TGG | 0.563273 | 7.1:-2367314 | None:intergenic |
| GACGAGATGGAACTGTTACA+AGG | 0.568392 | 7.1:+2367085 | MS.gene026061:CDS |
| TTGTGATTGTGATTAGGATA+GGG | 0.568508 | 7.1:-2367589 | None:intergenic |
| TCTGAGAGCTCCTCCGGGAA+CGG | 0.571875 | 7.1:-2366915 | None:intergenic |
| GGAACGGCGACGGTGACGGA+GGG | 0.575721 | 7.1:-2366899 | None:intergenic |
| CGAATACGAAGAAGAAGATG+AGG | 0.576730 | 7.1:+2366814 | MS.gene026061:CDS |
| AACAACGTAGCGCCAATCGC+CGG | 0.577047 | 7.1:+2367343 | MS.gene026061:CDS |
| GGAGGTCTGAGAGCTCCTCC+GGG | 0.580886 | 7.1:-2366920 | None:intergenic |
| GGAGGACTGTTTGGATCGCG+TGG | 0.584367 | 7.1:+2367835 | MS.gene026061:CDS |
| AATTGGTGGATGAGAAATGG+AGG | 0.596698 | 7.1:+2367917 | MS.gene026061:CDS |
| AAGATGATCGTGGTTGCGGT+TGG | 0.598224 | 7.1:-2366953 | None:intergenic |
| GGGAACGGCGACGGTGACGG+AGG | 0.599600 | 7.1:-2366900 | None:intergenic |
| CAGTTCCATCTCGTCTTCGT+CGG | 0.601304 | 7.1:-2367077 | None:intergenic |
| AATTGTAGTACTGCTGGGAA+TGG | 0.606803 | 7.1:+2367736 | MS.gene026061:CDS |
| TTCATCGTCTGAAACGGTAG+CGG | 0.613739 | 7.1:-2367874 | None:intergenic |
| GGAACGGAGATAGAAGCAGA+TGG | 0.620359 | 7.1:-2366878 | None:intergenic |
| GTCGTCTATAGTAACATCAC+CGG | 0.620625 | 7.1:-2367362 | None:intergenic |
| TTGATGGCTGGTGCAATGGG+AGG | 0.622136 | 7.1:+2367814 | MS.gene026061:CDS |
| CTCGATTACACAACACAGAG+AGG | 0.638279 | 7.1:+2367112 | MS.gene026061:CDS |
| TCCCGTAATTCTCAAAAGCG+AGG | 0.641190 | 7.1:+2367432 | MS.gene026061:CDS |
| AGCTCGTTGAGAAGATCCGA+AGG | 0.641486 | 7.1:+2367212 | MS.gene026061:CDS |
| GATTTGATCGTAGAATTGAG+CGG | 0.644134 | 7.1:-2367155 | None:intergenic |
| CTTCTGATAGAAACGGATCG+AGG | 0.677211 | 7.1:-2367484 | None:intergenic |
| TGAGTCGGCGAAGATGATCG+TGG | 0.687674 | 7.1:-2366963 | None:intergenic |
| GAAGCGTGAATCAAATGATG+CGG | 0.695426 | 7.1:+2367513 | MS.gene026061:CDS |
| GTCACCGTCGCCGTTCCCGG+AGG | 0.698715 | 7.1:+2366905 | MS.gene026061:CDS |
| AGGCCGTGAACGCTTCCGCG+TGG | 0.708545 | 7.1:-2367464 | None:intergenic |
| GTGTGATTGAAGAGACAGTG+AGG | 0.762218 | 7.1:+2367767 | MS.gene026061:CDS |
| GCGAGGTAAATTCAACCACG+CGG | 0.795949 | 7.1:+2367449 | MS.gene026061:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ACATTAGGAGTAGTAATTGT+AGG | - | chr7.1:2367673-2367692 | None:intergenic | 30.0% | |
| AGTAATAATTGTAGTACTGC+TGG | + | chr7.1:2367730-2367749 | MS.gene026061:CDS | 30.0% | |
| ATTGTGATTGTGATTAGGAT+AGG | - | chr7.1:2367593-2367612 | None:intergenic | 30.0% | |
| GCAGCATTAGTATTAACATT+AGG | - | chr7.1:2367688-2367707 | None:intergenic | 30.0% | |
| GTAATAATTGTAGTACTGCT+GGG | + | chr7.1:2367731-2367750 | MS.gene026061:CDS | 30.0% | |
| TGTATTTCTTCTTCAACCTT+CGG | - | chr7.1:2367231-2367250 | None:intergenic | 30.0% | |
| TTGTGATTGTGATTAGGATA+GGG | - | chr7.1:2367592-2367611 | None:intergenic | 30.0% | |
| TTGTGATTGTGATTGTGATT+AGG | - | chr7.1:2367598-2367617 | None:intergenic | 30.0% | |
| CCTAAATTCATCGTCTGAAA+CGG | - | chr7.1:2367883-2367902 | None:intergenic | 35.0% | |
| CTCAAAGCTTCTGATAGAAA+CGG | - | chr7.1:2367494-2367513 | None:intergenic | 35.0% | |
| GATAGGGATTAGGATTATTG+AGG | - | chr7.1:2367576-2367595 | None:intergenic | 35.0% | |
| GATTTGATCGTAGAATTGAG+CGG | - | chr7.1:2367158-2367177 | None:intergenic | 35.0% | |
| GTAGCATAAGCATTAGGATT+AGG | - | chr7.1:2367622-2367641 | None:intergenic | 35.0% | |
| TCAACGTTTGGATCAAATTG+AGG | + | chr7.1:2367000-2367019 | MS.gene026061:CDS | 35.0% | |
| TTGTGATTAGGATAGGGATT+AGG | - | chr7.1:2367586-2367605 | None:intergenic | 35.0% | |
| ! | GGAAGTGTATTCAAAGAGAT+TGG | + | chr7.1:2367960-2367979 | MS.gene026061:CDS | 35.0% |
| !! | ACGATGAATTTAGGTTTTGG+AGG | + | chr7.1:2367889-2367908 | MS.gene026061:CDS | 35.0% |
| !! | CAGACGATGAATTTAGGTTT+TGG | + | chr7.1:2367886-2367905 | MS.gene026061:CDS | 35.0% |
| !! | GTAATTGTAGGTGTTATTGC+AGG | - | chr7.1:2367661-2367680 | None:intergenic | 35.0% |
| !! | TACCTCGCTTTTGAGAATTA+CGG | - | chr7.1:2367437-2367456 | None:intergenic | 35.0% |
| !!! | ATGAATTTAGGTTTTGGAGG+TGG | + | chr7.1:2367892-2367911 | MS.gene026061:CDS | 35.0% |
| !!! | GAAGCAACAGATTTTGGAAT+TGG | + | chr7.1:2367939-2367958 | MS.gene026061:CDS | 35.0% |
| AATTGTAGTACTGCTGGGAA+TGG | + | chr7.1:2367736-2367755 | MS.gene026061:CDS | 40.0% | |
| ATCGCCGTTTAAGGAATTGA+TGG | + | chr7.1:2367798-2367817 | MS.gene026061:CDS | 40.0% | |
| CATCTTCTTCTTCGTATTCG+TGG | - | chr7.1:2366814-2366833 | None:intergenic | 40.0% | |
| CCAGCCATCAATTCCTTAAA+CGG | - | chr7.1:2367805-2367824 | None:intergenic | 40.0% | |
| CCGTTTCAGACGATGAATTT+AGG | + | chr7.1:2367880-2367899 | MS.gene026061:CDS | 40.0% | |
| CGAATACGAAGAAGAAGATG+AGG | + | chr7.1:2366814-2366833 | MS.gene026061:CDS | 40.0% | |
| CTTGATGAATTGCGTTCAGT+TGG | + | chr7.1:2368012-2368031 | MS.gene026061:CDS | 40.0% | |
| GAAGCGTGAATCAAATGATG+CGG | + | chr7.1:2367513-2367532 | MS.gene026061:CDS | 40.0% | |
| GAATTACGGGAGTGAAATTG+AGG | - | chr7.1:2367423-2367442 | None:intergenic | 40.0% | |
| GAGTTGTTTATCGCCGTTTA+AGG | + | chr7.1:2367789-2367808 | MS.gene026061:CDS | 40.0% | |
| GATGTCTTCTTCAGCGAAAA+CGG | - | chr7.1:2366771-2366790 | None:intergenic | 40.0% | |
| GCAGTTGTAGCATAAGCATT+AGG | - | chr7.1:2367628-2367647 | None:intergenic | 40.0% | |
| GTCGTCTATAGTAACATCAC+CGG | - | chr7.1:2367365-2367384 | None:intergenic | 40.0% | |
| GTGAAATTGAGGTTAGGGTT+AGG | - | chr7.1:2367412-2367431 | None:intergenic | 40.0% | |
| TGAGGAGAAAAAACCACCTA+TGG | + | chr7.1:2367018-2367037 | MS.gene026061:CDS | 40.0% | |
| TTGAAATCTCTCGCAAGATC+TGG | + | chr7.1:2367320-2367339 | MS.gene026061:CDS | 40.0% | |
| TTGATCCAAACGTTGACGTT+TGG | - | chr7.1:2366996-2367015 | None:intergenic | 40.0% | |
| TTGCGTGAATCTTCAACCAT+AGG | - | chr7.1:2367037-2367056 | None:intergenic | 40.0% | |
| ! | AATTGGTGGATGAGAAATGG+AGG | + | chr7.1:2367917-2367936 | MS.gene026061:CDS | 40.0% |
| ! | ATGGAGGAAGCAACAGATTT+TGG | + | chr7.1:2367933-2367952 | MS.gene026061:CDS | 40.0% |
| ! | CAAACGTTGACGTTTGGAAT+CGG | - | chr7.1:2366990-2367009 | None:intergenic | 40.0% |
| ! | GAGAATTGGTGGATGAGAAA+TGG | + | chr7.1:2367914-2367933 | MS.gene026061:CDS | 40.0% |
| !! | ACCTCGCTTTTGAGAATTAC+GGG | - | chr7.1:2367436-2367455 | None:intergenic | 40.0% |
| !! | GTTGAAATCGAGTTGAAGCT+TGG | - | chr7.1:2367185-2367204 | None:intergenic | 40.0% |
| !!! | GCAAGCTTTTTCAACGTCTA+TGG | + | chr7.1:2367053-2367072 | MS.gene026061:CDS | 40.0% |
| ACGGGAGTGAAATTGAGGTT+AGG | - | chr7.1:2367418-2367437 | None:intergenic | 45.0% | |
| ATAGTAACATCACCGGCGAT+TGG | - | chr7.1:2367358-2367377 | None:intergenic | 45.0% | |
| CGATTCCAAACGTCAACGTT+TGG | + | chr7.1:2366988-2367007 | MS.gene026061:CDS | 45.0% | |
| CGGGAGTGAAATTGAGGTTA+GGG | - | chr7.1:2367417-2367436 | None:intergenic | 45.0% | |
| CGTGAATCTTCAACCATAGG+TGG | - | chr7.1:2367034-2367053 | None:intergenic | 45.0% | |
| CTCGATTACACAACACAGAG+AGG | + | chr7.1:2367112-2367131 | MS.gene026061:CDS | 45.0% | |
| CTTCTGATAGAAACGGATCG+AGG | - | chr7.1:2367487-2367506 | None:intergenic | 45.0% | |
| CTTGCGAGAGATTTCAAACG+TGG | - | chr7.1:2367317-2367336 | None:intergenic | 45.0% | |
| GACGAGATGGAACTGTTACA+AGG | + | chr7.1:2367085-2367104 | MS.gene026061:CDS | 45.0% | |
| GATGAATTGCGTTCAGTTGG+TGG | + | chr7.1:2368015-2368034 | MS.gene026061:CDS | 45.0% | |
| GTGTGATTGAAGAGACAGTG+AGG | + | chr7.1:2367767-2367786 | MS.gene026061:CDS | 45.0% | |
| GTTGTGAGCAAAATGAGCTC+TGG | + | chr7.1:2367256-2367275 | MS.gene026061:CDS | 45.0% | |
| TCCCGTAATTCTCAAAAGCG+AGG | + | chr7.1:2367432-2367451 | MS.gene026061:CDS | 45.0% | |
| TTGAGGTTAGGGTTAGGACT+TGG | - | chr7.1:2367406-2367425 | None:intergenic | 45.0% | |
| ! | ACGTTTGGAATCGGTTGAGT+CGG | - | chr7.1:2366981-2367000 | None:intergenic | 45.0% |
| ! | CCGTTTAAGGAATTGATGGC+TGG | + | chr7.1:2367802-2367821 | MS.gene026061:CDS | 45.0% |
| ! | GAATTGATGGCTGGTGCAAT+GGG | + | chr7.1:2367811-2367830 | MS.gene026061:CDS | 45.0% |
| ! | GAGCAAAATGAGCTCTGGTA+AGG | + | chr7.1:2367261-2367280 | MS.gene026061:CDS | 45.0% |
| ! | TTCATCGTCTGAAACGGTAG+CGG | - | chr7.1:2367877-2367896 | None:intergenic | 45.0% |
| !! | GTTGCGGTTGGTGTTAGAAT+TGG | - | chr7.1:2366944-2366963 | None:intergenic | 45.0% |
| !! | TTTTGGAGGTGGAGAATTGG+TGG | + | chr7.1:2367903-2367922 | MS.gene026061:CDS | 45.0% |
| !!! | AGGTTTTGGAGGTGGAGAAT+TGG | + | chr7.1:2367900-2367919 | MS.gene026061:CDS | 45.0% |
| AAGATGATCGTGGTTGCGGT+TGG | - | chr7.1:2366956-2366975 | None:intergenic | 50.0% | |
| AGCTCGTTGAGAAGATCCGA+AGG | + | chr7.1:2367212-2367231 | MS.gene026061:CDS | 50.0% | |
| CAGTTCCATCTCGTCTTCGT+CGG | - | chr7.1:2367080-2367099 | None:intergenic | 50.0% | |
| GCGAGGTAAATTCAACCACG+CGG | + | chr7.1:2367449-2367468 | MS.gene026061:CDS | 50.0% | |
| GGAACGGAGATAGAAGCAGA+TGG | - | chr7.1:2366881-2366900 | None:intergenic | 50.0% | |
| TTCGGATCTTCTCAACGAGC+TGG | - | chr7.1:2367213-2367232 | None:intergenic | 50.0% | |
| ! | GGAATTGATGGCTGGTGCAA+TGG | + | chr7.1:2367810-2367829 | MS.gene026061:CDS | 50.0% |
| !! | GCGGTTGGTGTTAGAATTGG+AGG | - | chr7.1:2366941-2366960 | None:intergenic | 50.0% |
| AACAACGTAGCGCCAATCGC+CGG | + | chr7.1:2367343-2367362 | MS.gene026061:CDS | 55.0% | |
| ACTGCTGGGAATGGTGTAGC+TGG | + | chr7.1:2367745-2367764 | MS.gene026061:CDS | 55.0% | |
| ATGGACCGACGAAGACGAGA+TGG | + | chr7.1:2367072-2367091 | MS.gene026061:CDS | 55.0% | |
| GCAATGGGAGGAGGACTGTT+TGG | + | chr7.1:2367826-2367845 | MS.gene026061:CDS | 55.0% | |
| GGCGAAGATGATCGTGGTTG+CGG | - | chr7.1:2366960-2366979 | None:intergenic | 55.0% | |
| TGAGTCGGCGAAGATGATCG+TGG | - | chr7.1:2366966-2366985 | None:intergenic | 55.0% | |
| ! | TTGATGGCTGGTGCAATGGG+AGG | + | chr7.1:2367814-2367833 | MS.gene026061:CDS | 55.0% |
| ATGGCTGGTGCAATGGGAGG+AGG | + | chr7.1:2367817-2367836 | MS.gene026061:CDS | 60.0% | |
| GGAGGACTGTTTGGATCGCG+TGG | + | chr7.1:2367835-2367854 | MS.gene026061:CDS | 60.0% | |
| TCTGAGAGCTCCTCCGGGAA+CGG | - | chr7.1:2366918-2366937 | None:intergenic | 60.0% | |
| TGGAGGTCTGAGAGCTCCTC+CGG | - | chr7.1:2366924-2366943 | None:intergenic | 60.0% | |
| !! | CAACCACGCGGAAGCGTTCA+CGG | + | chr7.1:2367461-2367480 | MS.gene026061:CDS | 60.0% |
| GGAGGTCTGAGAGCTCCTCC+GGG | - | chr7.1:2366923-2366942 | None:intergenic | 65.0% | |
| AGCTCCTCCGGGAACGGCGA+CGG | - | chr7.1:2366912-2366931 | None:intergenic | 70.0% | |
| AGGCCGTGAACGCTTCCGCG+TGG | - | chr7.1:2367467-2367486 | None:intergenic | 70.0% | |
| TCCGGGAACGGCGACGGTGA+CGG | - | chr7.1:2366906-2366925 | None:intergenic | 70.0% | |
| TCCGTCACCGTCGCCGTTCC+CGG | + | chr7.1:2366902-2366921 | MS.gene026061:CDS | 70.0% | |
| !! | GGAACGGCGACGGTGACGGA+GGG | - | chr7.1:2366902-2366921 | None:intergenic | 70.0% |
| !! | GGCGACGGTGACGGAGGGAA+CGG | - | chr7.1:2366897-2366916 | None:intergenic | 70.0% |
| GTCACCGTCGCCGTTCCCGG+AGG | + | chr7.1:2366905-2366924 | MS.gene026061:CDS | 75.0% | |
| ! | GGGAACGGCGACGGTGACGG+AGG | - | chr7.1:2366903-2366922 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 2366746 | 2368053 | 2366746 | ID=MS.gene026061 |
| chr7.1 | mRNA | 2366746 | 2368053 | 2366746 | ID=MS.gene026061.t1;Parent=MS.gene026061 |
| chr7.1 | exon | 2366746 | 2368053 | 2366746 | ID=MS.gene026061.t1.exon1;Parent=MS.gene026061.t1 |
| chr7.1 | CDS | 2366746 | 2368053 | 2366746 | ID=cds.MS.gene026061.t1;Parent=MS.gene026061.t1 |
| Gene Sequence |
| Protein sequence |
