Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026067.t1 | XP_003595135.2 | 83.2 | 297 | 50 | 0 | 1 | 297 | 6 | 302 | 2.70E-122 | 448.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026067.t1 | Q9SZI6 | 35.6 | 267 | 128 | 9 | 66 | 291 | 89 | 352 | 1.5e-20 | 101.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026067.t1 | G7IIE3 | 83.2 | 297 | 50 | 0 | 1 | 297 | 1 | 297 | 1.9e-122 | 448.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026067.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026067.t1 | MTR_2g038720 | 91.582 | 297 | 25 | 0 | 1 | 297 | 1 | 297 | 2.06e-179 | 496 |
MS.gene026067.t1 | MTR_4g126350 | 43.807 | 331 | 137 | 16 | 3 | 291 | 4 | 327 | 1.11e-47 | 162 |
MS.gene026067.t1 | MTR_1g016170 | 62.195 | 82 | 25 | 2 | 147 | 228 | 170 | 245 | 1.26e-25 | 103 |
MS.gene026067.t1 | MTR_4g121110 | 62.000 | 50 | 19 | 0 | 159 | 208 | 25 | 74 | 3.19e-17 | 77.0 |
MS.gene026067.t1 | MTR_7g112330 | 75.000 | 36 | 9 | 0 | 164 | 199 | 22 | 57 | 5.18e-14 | 68.2 |
MS.gene026067.t1 | MTR_5g020230 | 44.706 | 85 | 41 | 1 | 122 | 200 | 74 | 158 | 3.01e-13 | 68.2 |
MS.gene026067.t1 | MTR_1g116010 | 64.865 | 37 | 13 | 0 | 163 | 199 | 163 | 199 | 1.04e-11 | 63.9 |
MS.gene026067.t1 | MTR_8g077510 | 65.789 | 38 | 13 | 0 | 163 | 200 | 124 | 161 | 7.22e-11 | 61.6 |
MS.gene026067.t1 | MTR_1g006650 | 42.647 | 68 | 38 | 1 | 164 | 230 | 234 | 301 | 8.37e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026067.t1 | AT4G26150 | 35.714 | 294 | 141 | 10 | 44 | 291 | 61 | 352 | 8.26e-27 | 107 |
MS.gene026067.t1 | AT5G56860 | 34.826 | 201 | 82 | 9 | 46 | 197 | 63 | 263 | 3.54e-19 | 87.4 |
MS.gene026067.t1 | AT5G49300 | 62.500 | 56 | 20 | 1 | 147 | 201 | 18 | 73 | 6.23e-18 | 79.0 |
MS.gene026067.t1 | AT5G26930 | 73.171 | 41 | 11 | 0 | 161 | 201 | 23 | 63 | 1.99e-17 | 77.0 |
MS.gene026067.t1 | AT3G06740 | 63.830 | 47 | 17 | 0 | 156 | 202 | 33 | 79 | 5.42e-15 | 71.2 |
MS.gene026067.t1 | AT3G16870 | 68.293 | 41 | 13 | 0 | 161 | 201 | 39 | 79 | 2.27e-14 | 70.5 |
MS.gene026067.t1 | AT4G16141 | 65.854 | 41 | 14 | 0 | 161 | 201 | 34 | 74 | 4.15e-14 | 70.1 |
MS.gene026067.t1 | AT1G08010 | 42.857 | 84 | 47 | 1 | 147 | 229 | 203 | 286 | 1.74e-13 | 70.1 |
MS.gene026067.t1 | AT1G08010 | 42.857 | 84 | 47 | 1 | 147 | 229 | 203 | 286 | 1.74e-13 | 70.1 |
MS.gene026067.t1 | AT1G08010 | 42.857 | 84 | 47 | 1 | 147 | 229 | 203 | 286 | 1.74e-13 | 70.1 |
MS.gene026067.t1 | AT3G50870 | 61.538 | 52 | 19 | 1 | 163 | 214 | 151 | 201 | 1.39e-12 | 67.4 |
MS.gene026067.t1 | AT1G08000 | 40.698 | 86 | 47 | 2 | 115 | 199 | 171 | 253 | 1.40e-12 | 67.4 |
MS.gene026067.t1 | AT1G08000 | 40.698 | 86 | 47 | 2 | 115 | 199 | 171 | 253 | 1.40e-12 | 67.4 |
MS.gene026067.t1 | AT4G36620 | 59.184 | 49 | 20 | 0 | 159 | 207 | 70 | 118 | 3.95e-12 | 64.7 |
MS.gene026067.t1 | AT2G18380 | 70.732 | 41 | 11 | 1 | 164 | 203 | 92 | 132 | 4.82e-12 | 64.3 |
MS.gene026067.t1 | AT2G45050 | 37.500 | 80 | 49 | 1 | 152 | 230 | 167 | 246 | 1.26e-11 | 64.3 |
MS.gene026067.t1 | AT3G60530 | 32.407 | 108 | 67 | 2 | 131 | 237 | 130 | 232 | 1.62e-11 | 63.5 |
MS.gene026067.t1 | AT4G32890 | 36.458 | 96 | 59 | 2 | 164 | 257 | 197 | 292 | 1.96e-11 | 63.9 |
Find 58 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATCTTCTGGCTTGCTTAA+TGG | 0.177324 | 2.2:+48812542 | MS.gene026067:CDS |
ATCTTGTTTGATCTTGATTT+TGG | 0.229038 | 2.2:-48810928 | None:intergenic |
CTACTCATGGCTTTATCTTC+TGG | 0.251698 | 2.2:+48812530 | MS.gene026067:CDS |
TTTCAAACAACAACACTGTT+AGG | 0.256322 | 2.2:+48811479 | MS.gene026067:CDS |
TTAATCATTCTCTTCTTTGA+TGG | 0.270861 | 2.2:-48811352 | None:intergenic |
TCCTCAGTTCTTACTAGATT+TGG | 0.275505 | 2.2:-48811439 | None:intergenic |
ATCAAACAAGATCTTATTCT+TGG | 0.275784 | 2.2:+48810939 | MS.gene026067:CDS |
GGATCATCAAGAAGTGAAAA+AGG | 0.339108 | 2.2:+48811255 | MS.gene026067:CDS |
AACTTCTTTCCCTTCACATA+TGG | 0.359398 | 2.2:-48812341 | None:intergenic |
CACCATTTGCAGCGGCTGCA+AGG | 0.367222 | 2.2:-48812295 | None:intergenic |
CATCTTGAGGGAAAACTTGA+TGG | 0.376163 | 2.2:-48812490 | None:intergenic |
GCCCTTGCAGCCGCTGCAAA+TGG | 0.402224 | 2.2:+48812293 | MS.gene026067:CDS |
CTCTGGAGAAGTGGACCAAC+TGG | 0.407869 | 2.2:+48811535 | MS.gene026067:CDS |
ACCATTTGCAGCGGCTGCAA+GGG | 0.414991 | 2.2:-48812294 | None:intergenic |
TTGTAACTTCTGGTGAATCA+TGG | 0.418749 | 2.2:+48811233 | MS.gene026067:CDS |
CAAAGAAGAGAATGATTAAG+AGG | 0.444414 | 2.2:+48811356 | MS.gene026067:CDS |
TCAAACAAGATCTTATTCTT+GGG | 0.457205 | 2.2:+48810940 | MS.gene026067:CDS |
TTCAAACAACAACACTGTTA+GGG | 0.464863 | 2.2:+48811480 | MS.gene026067:CDS |
GAGAATGATTAAGAGGATGA+TGG | 0.470043 | 2.2:+48811363 | MS.gene026067:CDS |
TAGAGAAGAAGATGAAGAAG+TGG | 0.474019 | 2.2:-48810885 | None:intergenic |
TTGAAGATTTGATAACAAGT+TGG | 0.482551 | 2.2:+48812450 | MS.gene026067:CDS |
AGTTGCAAGTCAGAAGGAAA+AGG | 0.484061 | 2.2:+48812360 | MS.gene026067:CDS |
CTACACCATCACTTAATATG+TGG | 0.485834 | 2.2:-48810970 | None:intergenic |
GAGGATGATGGAAGATCAAA+GGG | 0.487515 | 2.2:+48811375 | MS.gene026067:CDS |
TGTAACTTCTGGTGAATCAT+GGG | 0.493931 | 2.2:+48811234 | MS.gene026067:CDS |
GATGCAGAATAACGATAAGT+TGG | 0.493962 | 2.2:-48810788 | None:intergenic |
TTGGTCCACTTCTCCAGAGA+GGG | 0.496789 | 2.2:-48811531 | None:intergenic |
ATAACGATAAGTTGGTATCA+TGG | 0.500444 | 2.2:-48810780 | None:intergenic |
AACAAGTTGGAGCAACAACT+TGG | 0.506773 | 2.2:+48812463 | MS.gene026067:CDS |
ACACAACTAAGACCCCTCTC+TGG | 0.508622 | 2.2:+48811518 | MS.gene026067:CDS |
AATGTGCACCACAATTGAAA+AGG | 0.511689 | 2.2:+48812396 | MS.gene026067:CDS |
AAAATTTAGCATTCATCAGA+AGG | 0.513032 | 2.2:-48812569 | None:intergenic |
CAGCCTCCTTCACATCTTGA+GGG | 0.514868 | 2.2:-48812502 | None:intergenic |
GTTGATTAGTATTGAAGAGA+TGG | 0.528693 | 2.2:-48810859 | None:intergenic |
AGAGGATGATGGAAGATCAA+AGG | 0.536944 | 2.2:+48811374 | MS.gene026067:CDS |
GCAGCCTCCTTCACATCTTG+AGG | 0.537105 | 2.2:-48812503 | None:intergenic |
AGTCACTTTGCAATGCCTGC+GGG | 0.545864 | 2.2:+48812246 | MS.gene026067:intron |
AAGACCCCTCTCTGGAGAAG+TGG | 0.553472 | 2.2:+48811526 | MS.gene026067:CDS |
GAAAGAAGTTGCAAGTCAGA+AGG | 0.562695 | 2.2:+48812354 | MS.gene026067:CDS |
CATATTAAGTGATGGTGTAG+AGG | 0.563231 | 2.2:+48810973 | MS.gene026067:CDS |
GGCAGAGAAACCATATGTGA+AGG | 0.565007 | 2.2:+48812331 | MS.gene026067:CDS |
TGCACCACAATTGAAAAGGA+AGG | 0.566431 | 2.2:+48812400 | MS.gene026067:CDS |
GGAGGCTGCTATTCTACTCA+TGG | 0.567161 | 2.2:+48812517 | MS.gene026067:CDS |
AAGTGGACCAACTGGTCCCA+AGG | 0.591915 | 2.2:+48811543 | MS.gene026067:CDS |
TGCAAATGGTGAAACTCTTG+TGG | 0.595671 | 2.2:+48812307 | MS.gene026067:CDS |
AGAGAGGGGTCTTAGTTGTG+TGG | 0.598153 | 2.2:-48811516 | None:intergenic |
ATCTTGAGGGAAAACTTGAT+GGG | 0.607027 | 2.2:-48812489 | None:intergenic |
ATATGTACCTTGGGACCAGT+TGG | 0.609719 | 2.2:-48811550 | None:intergenic |
CAGTCACTTTGCAATGCCTG+CGG | 0.611660 | 2.2:+48812245 | MS.gene026067:intron |
TCAAACCACATATTAAGTGA+TGG | 0.619574 | 2.2:+48810965 | MS.gene026067:CDS |
TGGTCCACTTCTCCAGAGAG+GGG | 0.626088 | 2.2:-48811530 | None:intergenic |
GCAGAGAAACCATATGTGAA+GGG | 0.631828 | 2.2:+48812332 | MS.gene026067:CDS |
GCACCACAATTGAAAAGGAA+GGG | 0.634758 | 2.2:+48812401 | MS.gene026067:CDS |
TTTCCCTCAAGATGTGAAGG+AGG | 0.643884 | 2.2:+48812499 | MS.gene026067:CDS |
AAGAGTTTCACCATTTGCAG+CGG | 0.647090 | 2.2:-48812303 | None:intergenic |
AAATGGTGAAACTCTTGTGG+TGG | 0.679475 | 2.2:+48812310 | MS.gene026067:CDS |
GTTGGTCCACTTCTCCAGAG+AGG | 0.682429 | 2.2:-48811532 | None:intergenic |
ACCAAATCTAGTAAGAACTG+AGG | 0.700207 | 2.2:+48811438 | MS.gene026067:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATAATTTTTTTTTAATTA+TGG | + | chr2.2:48811952-48811971 | MS.gene026067:intron | 0.0% |
!!! | ATATATATATAAAATTTTAA+AGG | - | chr2.2:48811047-48811066 | None:intergenic | 0.0% |
!!! | TATATATATAAAATTTTAAA+GGG | - | chr2.2:48811046-48811065 | None:intergenic | 0.0% |
!! | AGTAGTAATAAAAAAAAAAT+TGG | - | chr2.2:48811719-48811738 | None:intergenic | 10.0% |
!! | TCATTATTTAGATCAAAAAA+AGG | - | chr2.2:48810827-48810846 | None:intergenic | 15.0% |
!! | TACAAAATTCTTAACCTAAA+AGG | - | chr2.2:48811218-48811237 | None:intergenic | 20.0% |
!!! | TTAGAGAAATGTTTTAAAGA+TGG | + | chr2.2:48811657-48811676 | MS.gene026067:intron | 20.0% |
! | ATCAAACAAGATCTTATTCT+TGG | + | chr2.2:48810939-48810958 | MS.gene026067:CDS | 25.0% |
! | GAGTTCGAGATTAATTAATT+TGG | + | chr2.2:48811679-48811698 | MS.gene026067:intron | 25.0% |
! | TCAAACAAGATCTTATTCTT+GGG | + | chr2.2:48810940-48810959 | MS.gene026067:CDS | 25.0% |
! | TGAAAAAGGATGAAAAAGAT+TGG | + | chr2.2:48811269-48811288 | MS.gene026067:CDS | 25.0% |
! | TTAATCATTCTCTTCTTTGA+TGG | - | chr2.2:48811355-48811374 | None:intergenic | 25.0% |
!! | GTTAAGAATTTTGTAACTTC+TGG | + | chr2.2:48811223-48811242 | MS.gene026067:CDS | 25.0% |
!! | TTCATGATTAAGCTCTTTTA+TGG | + | chr2.2:48812099-48812118 | MS.gene026067:intron | 25.0% |
!! | TTGAAGATTTGATAACAAGT+TGG | + | chr2.2:48812450-48812469 | MS.gene026067:CDS | 25.0% |
!! | TTTAGATCAAAAAAAGGCAT+AGG | - | chr2.2:48810821-48810840 | None:intergenic | 25.0% |
!!! | ATCTTGTTTGATCTTGATTT+TGG | - | chr2.2:48810931-48810950 | None:intergenic | 25.0% |
ATATTAGATGTCAGTCTATG+AGG | + | chr2.2:48811793-48811812 | MS.gene026067:intron | 30.0% | |
CAAAGAAGAGAATGATTAAG+AGG | + | chr2.2:48811356-48811375 | MS.gene026067:CDS | 30.0% | |
GAAAACTAAAGCCTCTATTA+TGG | - | chr2.2:48811837-48811856 | None:intergenic | 30.0% | |
GAACAAATCTTATACAAGCA+AGG | - | chr2.2:48812082-48812101 | None:intergenic | 30.0% | |
TCAAACCACATATTAAGTGA+TGG | + | chr2.2:48810965-48810984 | MS.gene026067:CDS | 30.0% | |
TTCAAACAACAACACTGTTA+GGG | + | chr2.2:48811480-48811499 | MS.gene026067:CDS | 30.0% | |
TTGTTTCAGAACCATAATAG+AGG | + | chr2.2:48811823-48811842 | MS.gene026067:intron | 30.0% | |
TTTCAAACAACAACACTGTT+AGG | + | chr2.2:48811479-48811498 | MS.gene026067:CDS | 30.0% | |
! | AGACGAGTATGAAAGTTTTA+TGG | + | chr2.2:48811300-48811319 | MS.gene026067:CDS | 30.0% |
! | ATTAAGCTCTTTTATGGCTT+AGG | + | chr2.2:48812105-48812124 | MS.gene026067:intron | 30.0% |
! | GTTGATTAGTATTGAAGAGA+TGG | - | chr2.2:48810862-48810881 | None:intergenic | 30.0% |
!! | CTATTATGGTTCTGAAACAA+TGG | - | chr2.2:48811823-48811842 | None:intergenic | 30.0% |
AACTTCTTTCCCTTCACATA+TGG | - | chr2.2:48812344-48812363 | None:intergenic | 35.0% | |
AATGTGCACCACAATTGAAA+AGG | + | chr2.2:48812396-48812415 | MS.gene026067:CDS | 35.0% | |
ACCAAATCTAGTAAGAACTG+AGG | + | chr2.2:48811438-48811457 | MS.gene026067:CDS | 35.0% | |
ATCTTGAGGGAAAACTTGAT+GGG | - | chr2.2:48812492-48812511 | None:intergenic | 35.0% | |
CTACACCATCACTTAATATG+TGG | - | chr2.2:48810973-48810992 | None:intergenic | 35.0% | |
GAGAATGATTAAGAGGATGA+TGG | + | chr2.2:48811363-48811382 | MS.gene026067:CDS | 35.0% | |
GATGCAGAATAACGATAAGT+TGG | - | chr2.2:48810791-48810810 | None:intergenic | 35.0% | |
GGATCATCAAGAAGTGAAAA+AGG | + | chr2.2:48811255-48811274 | MS.gene026067:CDS | 35.0% | |
TAGAGAAGAAGATGAAGAAG+TGG | - | chr2.2:48810888-48810907 | None:intergenic | 35.0% | |
TCCTCAGTTCTTACTAGATT+TGG | - | chr2.2:48811442-48811461 | None:intergenic | 35.0% | |
TGTAACTTCTGGTGAATCAT+GGG | + | chr2.2:48811234-48811253 | MS.gene026067:CDS | 35.0% | |
TTGTAACTTCTGGTGAATCA+TGG | + | chr2.2:48811233-48811252 | MS.gene026067:CDS | 35.0% | |
! | AGATCAAAAAAAGGCATAGG+AGG | - | chr2.2:48810818-48810837 | None:intergenic | 35.0% |
! | CATATTAAGTGATGGTGTAG+AGG | + | chr2.2:48810973-48810992 | MS.gene026067:CDS | 35.0% |
! | CATGTGATTGTCATCCTTTT+AGG | + | chr2.2:48811201-48811220 | MS.gene026067:intron | 35.0% |
! | TTACCCTTCCTTTTCAATTG+TGG | - | chr2.2:48812407-48812426 | None:intergenic | 35.0% |
!! | GTATGAAAGTTTTATGGCTG+AGG | + | chr2.2:48811306-48811325 | MS.gene026067:CDS | 35.0% |
!! | TTATCTTCTGGCTTGCTTAA+TGG | + | chr2.2:48812542-48812561 | MS.gene026067:CDS | 35.0% |
AAATGGTGAAACTCTTGTGG+TGG | + | chr2.2:48812310-48812329 | MS.gene026067:CDS | 40.0% | |
AAGAGTTTCACCATTTGCAG+CGG | - | chr2.2:48812306-48812325 | None:intergenic | 40.0% | |
AGTTGCAAGTCAGAAGGAAA+AGG | + | chr2.2:48812360-48812379 | MS.gene026067:CDS | 40.0% | |
CATCTTGAGGGAAAACTTGA+TGG | - | chr2.2:48812493-48812512 | None:intergenic | 40.0% | |
GAAAGAAGTTGCAAGTCAGA+AGG | + | chr2.2:48812354-48812373 | MS.gene026067:CDS | 40.0% | |
GCACCACAATTGAAAAGGAA+GGG | + | chr2.2:48812401-48812420 | MS.gene026067:CDS | 40.0% | |
GCAGAGAAACCATATGTGAA+GGG | + | chr2.2:48812332-48812351 | MS.gene026067:CDS | 40.0% | |
TGCAAATGGTGAAACTCTTG+TGG | + | chr2.2:48812307-48812326 | MS.gene026067:CDS | 40.0% | |
TGCACCACAATTGAAAAGGA+AGG | + | chr2.2:48812400-48812419 | MS.gene026067:CDS | 40.0% | |
! | AACAAGTTGGAGCAACAACT+TGG | + | chr2.2:48812463-48812482 | MS.gene026067:CDS | 40.0% |
! | AGTTTTCCCTCAAGATGTGA+AGG | + | chr2.2:48812496-48812515 | MS.gene026067:CDS | 40.0% |
!! | AGAGGATGATGGAAGATCAA+AGG | + | chr2.2:48811374-48811393 | MS.gene026067:CDS | 40.0% |
!! | CTACTCATGGCTTTATCTTC+TGG | + | chr2.2:48812530-48812549 | MS.gene026067:CDS | 40.0% |
!! | GAGGATGATGGAAGATCAAA+GGG | + | chr2.2:48811375-48811394 | MS.gene026067:CDS | 40.0% |
ATATGTACCTTGGGACCAGT+TGG | - | chr2.2:48811553-48811572 | None:intergenic | 45.0% | |
CCCAAGGTACATATTGCTCA+CGG | + | chr2.2:48811559-48811578 | MS.gene026067:intron | 45.0% | |
CCGTGAGCAATATGTACCTT+GGG | - | chr2.2:48811562-48811581 | None:intergenic | 45.0% | |
GGCAGAGAAACCATATGTGA+AGG | + | chr2.2:48812331-48812350 | MS.gene026067:CDS | 45.0% | |
TCCGTGAGCAATATGTACCT+TGG | - | chr2.2:48811563-48811582 | None:intergenic | 45.0% | |
TTTCCCTCAAGATGTGAAGG+AGG | + | chr2.2:48812499-48812518 | MS.gene026067:CDS | 45.0% | |
! | TTTTCTTTGTCGAATCCCGC+AGG | - | chr2.2:48812264-48812283 | None:intergenic | 45.0% |
!!! | ATATATATAAAATTTTAAAG+GGG | - | chr2.2:48811045-48811064 | None:intergenic | 5.0% |
!!! | GAAAAAAATATTATTTTAAA+AGG | - | chr2.2:48811591-48811610 | None:intergenic | 5.0% |
ACACAACTAAGACCCCTCTC+TGG | + | chr2.2:48811518-48811537 | MS.gene026067:CDS | 50.0% | |
AGAGAGGGGTCTTAGTTGTG+TGG | - | chr2.2:48811519-48811538 | None:intergenic | 50.0% | |
CAGCCTCCTTCACATCTTGA+GGG | - | chr2.2:48812505-48812524 | None:intergenic | 50.0% | |
GGAGGCTGCTATTCTACTCA+TGG | + | chr2.2:48812517-48812536 | MS.gene026067:CDS | 50.0% | |
TTGGTCCACTTCTCCAGAGA+GGG | - | chr2.2:48811534-48811553 | None:intergenic | 50.0% | |
! | AGTCACTTTGCAATGCCTGC+GGG | + | chr2.2:48812246-48812265 | MS.gene026067:intron | 50.0% |
! | CAGTCACTTTGCAATGCCTG+CGG | + | chr2.2:48812245-48812264 | MS.gene026067:intron | 50.0% |
AAGTGGACCAACTGGTCCCA+AGG | + | chr2.2:48811543-48811562 | MS.gene026067:CDS | 55.0% | |
ACCATTTGCAGCGGCTGCAA+GGG | - | chr2.2:48812297-48812316 | None:intergenic | 55.0% | |
GCAGCCTCCTTCACATCTTG+AGG | - | chr2.2:48812506-48812525 | None:intergenic | 55.0% | |
GTTGGTCCACTTCTCCAGAG+AGG | - | chr2.2:48811535-48811554 | None:intergenic | 55.0% | |
TGGTCCACTTCTCCAGAGAG+GGG | - | chr2.2:48811533-48811552 | None:intergenic | 55.0% | |
! | AAGACCCCTCTCTGGAGAAG+TGG | + | chr2.2:48811526-48811545 | MS.gene026067:CDS | 55.0% |
! | CTCTGGAGAAGTGGACCAAC+TGG | + | chr2.2:48811535-48811554 | MS.gene026067:CDS | 55.0% |
CACCATTTGCAGCGGCTGCA+AGG | - | chr2.2:48812298-48812317 | None:intergenic | 60.0% | |
GCCCTTGCAGCCGCTGCAAA+TGG | + | chr2.2:48812293-48812312 | MS.gene026067:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 48810782 | 48812586 | 48810782 | ID=MS.gene026067 |
chr2.2 | mRNA | 48810782 | 48812586 | 48810782 | ID=MS.gene026067.t1;Parent=MS.gene026067 |
chr2.2 | exon | 48810782 | 48810994 | 48810782 | ID=MS.gene026067.t1.exon1;Parent=MS.gene026067.t1 |
chr2.2 | CDS | 48810782 | 48810994 | 48810782 | ID=cds.MS.gene026067.t1;Parent=MS.gene026067.t1 |
chr2.2 | exon | 48811223 | 48811564 | 48811223 | ID=MS.gene026067.t1.exon2;Parent=MS.gene026067.t1 |
chr2.2 | CDS | 48811223 | 48811564 | 48811223 | ID=cds.MS.gene026067.t1;Parent=MS.gene026067.t1 |
chr2.2 | exon | 48812248 | 48812586 | 48812248 | ID=MS.gene026067.t1.exon3;Parent=MS.gene026067.t1 |
chr2.2 | CDS | 48812248 | 48812586 | 48812248 | ID=cds.MS.gene026067.t1;Parent=MS.gene026067.t1 |
Gene Sequence |
Protein sequence |