Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026089.t1 | XP_024631492.1 | 96.4 | 530 | 16 | 2 | 1 | 530 | 1 | 527 | 4.10E-275 | 956.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026089.t1 | Q9LTS4 | 36.6 | 511 | 232 | 17 | 44 | 522 | 14 | 464 | 6.9e-53 | 209.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026089.t1 | G7IIK8 | 95.5 | 530 | 16 | 3 | 1 | 530 | 1 | 522 | 9.9e-271 | 941.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026089.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026089.t1 | MTR_2g039620 | 95.472 | 530 | 16 | 3 | 1 | 530 | 1 | 522 | 0.0 | 1020 |
MS.gene026089.t1 | MTR_2g039620 | 96.403 | 417 | 12 | 2 | 114 | 530 | 4 | 417 | 0.0 | 808 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026089.t1 | AT5G56960 | 39.963 | 543 | 262 | 18 | 12 | 522 | 13 | 523 | 3.50e-89 | 284 |
MS.gene026089.t1 | AT5G56960 | 36.149 | 509 | 237 | 17 | 44 | 522 | 14 | 464 | 3.16e-60 | 206 |
Find 95 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATGTATTGATTCGATTAT+TGG | 0.081677 | 2.2:-47853717 | MS.gene026089:CDS |
CTAAAATTTGACCCTATATT+AGG | 0.183433 | 2.2:+47854671 | None:intergenic |
GATCATTGAGTCATATATTT+TGG | 0.239604 | 2.2:+47851693 | None:intergenic |
GATGCTCTCACATTTGTCTT+TGG | 0.245611 | 2.2:-47856384 | MS.gene026089:CDS |
GAATAGTCGTTTGTCCTTCT+TGG | 0.247039 | 2.2:-47856215 | MS.gene026089:intron |
AAATATATACTTTGATAATA+TGG | 0.249981 | 2.2:+47856351 | None:intergenic |
CAATTACCAAGTTCTTCTTT+AGG | 0.263208 | 2.2:-47856166 | MS.gene026089:CDS |
AATTACCAAGTTCTTCTTTA+GGG | 0.266258 | 2.2:-47856165 | MS.gene026089:CDS |
CCACTCTTCTCACTGCTTCC+TGG | 0.304864 | 2.2:+47851744 | None:intergenic |
TCATTCTCAATTTGTGTTGT+AGG | 0.322222 | 2.2:+47854818 | None:intergenic |
CTTCCAAATGCACTAGCTTC+TGG | 0.330949 | 2.2:+47854713 | None:intergenic |
TACTTCATCAAATAACCTTC+AGG | 0.345353 | 2.2:-47853616 | MS.gene026089:CDS |
CATGATAAAAGTCCTAATAT+AGG | 0.347025 | 2.2:-47854683 | MS.gene026089:CDS |
CTCCTTAGCTGTTATCAGTA+TGG | 0.357487 | 2.2:+47853976 | None:intergenic |
AATATGAGAGATGAGTATTC+AGG | 0.359714 | 2.2:+47854995 | None:intergenic |
CATCCAGAAGCTAGTGCATT+TGG | 0.365951 | 2.2:-47854716 | MS.gene026089:CDS |
ATGGGACGAGGAAGCCTTCC+AGG | 0.369330 | 2.2:-47851762 | MS.gene026089:CDS |
GGTAGTAATGTGTTTGAAAC+AGG | 0.374921 | 2.2:+47854887 | None:intergenic |
ATGATAAAAGTCCTAATATA+GGG | 0.380695 | 2.2:-47854682 | MS.gene026089:CDS |
GGAGACATTGAGATCTTTGA+TGG | 0.383429 | 2.2:-47853957 | MS.gene026089:CDS |
AGAATTGATGTCACAACAAT+TGG | 0.385231 | 2.2:-47853903 | MS.gene026089:CDS |
CATTCTCAATTTGTGTTGTA+GGG | 0.390206 | 2.2:+47854819 | None:intergenic |
TTTACTCCTCCAAGTTGGTT+AGG | 0.398273 | 2.2:+47854926 | None:intergenic |
ACATGTCAACTTGGTTTCAA+TGG | 0.402871 | 2.2:-47853675 | MS.gene026089:CDS |
CTACTTAGAGCTGCAACAAT+TGG | 0.411814 | 2.2:-47855727 | MS.gene026089:CDS |
ATCAAATAACCTTCAGGCTA+AGG | 0.429025 | 2.2:-47853610 | MS.gene026089:CDS |
AATTCAGTTCTGACGGCTAC+AGG | 0.433952 | 2.2:+47856433 | None:intergenic |
CAATTGTTGCAGCTCTAAGT+AGG | 0.455858 | 2.2:+47855728 | None:intergenic |
GGGGTGTAGATAGAACATTT+TGG | 0.464905 | 2.2:+47854777 | None:intergenic |
CGTTCTCTAATGCAATCTCT+TGG | 0.486499 | 2.2:-47856406 | MS.gene026089:CDS |
CCTCCAAGTTGGTTAGGATC+AGG | 0.487097 | 2.2:+47854932 | None:intergenic |
AGTCGTTTGTCCTTCTTGGA+TGG | 0.492248 | 2.2:-47856211 | MS.gene026089:CDS |
AACAAAGGAGAAATTGAGCT+TGG | 0.495316 | 2.2:-47855451 | MS.gene026089:CDS |
GTGTTTGAAACAGGCCTCAT+TGG | 0.497033 | 2.2:+47854896 | None:intergenic |
AATTGAGGTGGAGAAGTTCC+AGG | 0.500124 | 2.2:+47854959 | None:intergenic |
AATTGTGTTGGTGTGATTTG+AGG | 0.500733 | 2.2:+47854845 | None:intergenic |
TCTTCTCACTGCTTCCTGGA+AGG | 0.503286 | 2.2:+47851748 | None:intergenic |
GTTGTAGGGAATAATTGTGT+TGG | 0.512655 | 2.2:+47854833 | None:intergenic |
TTTACAGGAAGCAAGGATCA+AGG | 0.513199 | 2.2:-47855576 | MS.gene026089:intron |
AGAGATGAGTATTCAGGAGT+AGG | 0.522961 | 2.2:+47855001 | None:intergenic |
AGAAGATGAATCAATGGTAG+TGG | 0.525040 | 2.2:-47853777 | MS.gene026089:CDS |
TGCGCAGGCGGATATTCAAA+CGG | 0.526338 | 2.2:-47855134 | MS.gene026089:intron |
TTCATCAGAAGATGAATCAA+TGG | 0.532346 | 2.2:-47853783 | MS.gene026089:CDS |
CTGAGTAATCCTTAGCCTGA+AGG | 0.534544 | 2.2:+47853601 | None:intergenic |
TCACCTGATCCTAACCAACT+TGG | 0.535317 | 2.2:-47854935 | MS.gene026089:CDS |
TCATGATCAACATGTCAACT+TGG | 0.538074 | 2.2:-47853684 | MS.gene026089:CDS |
GGCAATTGTTGAAGTTGAAG+AGG | 0.545458 | 2.2:+47854866 | None:intergenic |
TGATGAAGTAAATCATTCCC+TGG | 0.552419 | 2.2:+47853629 | None:intergenic |
AATTGTTGCAGCTCTAAGTA+GGG | 0.554645 | 2.2:+47855729 | None:intergenic |
GAATATTTACTCCTCCAAGT+TGG | 0.557510 | 2.2:+47854921 | None:intergenic |
CCTGATCCTAACCAACTTGG+AGG | 0.557669 | 2.2:-47854932 | MS.gene026089:CDS |
GTTTATGCAGATAAGTGAAT+GGG | 0.559981 | 2.2:-47851780 | MS.gene026089:intron |
TTTGAAACAGGCCTCATTGG+TGG | 0.560996 | 2.2:+47854899 | None:intergenic |
TTAGGATCAGGTGAAAATTG+AGG | 0.561439 | 2.2:+47854944 | None:intergenic |
TTCCATACTGATAACAGCTA+AGG | 0.563069 | 2.2:-47853978 | MS.gene026089:CDS |
GAGGTTGATGTTGATGAGAA+GGG | 0.565051 | 2.2:+47854756 | None:intergenic |
TGAGGTTGATGTTGATGAGA+AGG | 0.576774 | 2.2:+47854755 | None:intergenic |
ACACTCCCTAAAGAAGAACT+TGG | 0.577549 | 2.2:+47856160 | None:intergenic |
ACAAATACAAATCATGCACC+AGG | 0.579495 | 2.2:-47853647 | MS.gene026089:CDS |
ATGAGATCACTATCAACAGC+AGG | 0.579733 | 2.2:-47855028 | MS.gene026089:CDS |
CTTAGAGCATTACTTCCTCA+AGG | 0.580881 | 2.2:-47854488 | MS.gene026089:CDS |
GGTTTATGCAGATAAGTGAA+TGG | 0.584114 | 2.2:-47851781 | MS.gene026089:intron |
CAGTTCTGACGGCTACAGGA+AGG | 0.586512 | 2.2:+47856437 | None:intergenic |
CTTCAGGCTAAGGATTACTC+AGG | 0.589180 | 2.2:-47853600 | MS.gene026089:intron |
ATGATGAAGTTGATTACTCG+AGG | 0.589833 | 2.2:+47854562 | None:intergenic |
GGATCAGGTGAAAATTGAGG+TGG | 0.596720 | 2.2:+47854947 | None:intergenic |
CAAGAGATTGCATTAGAGAA+CGG | 0.600137 | 2.2:+47856407 | None:intergenic |
GTACGTACCTTTGTTCCTTG+AGG | 0.603059 | 2.2:+47854473 | None:intergenic |
AGTTCTGACGGCTACAGGAA+GGG | 0.603804 | 2.2:+47856438 | None:intergenic |
AGGTTGATGTTGATGAGAAG+GGG | 0.605846 | 2.2:+47854757 | None:intergenic |
ACGGATAAATTCAGTTCTGA+CGG | 0.607682 | 2.2:+47856426 | None:intergenic |
ATTGTAGAAACCATCCAAGA+AGG | 0.610273 | 2.2:+47856201 | None:intergenic |
ATTGAAGATGAAGATGATGA+AGG | 0.610501 | 2.2:+47855049 | None:intergenic |
TCAACCTCAGCAAAATTATG+TGG | 0.614391 | 2.2:-47854741 | MS.gene026089:CDS |
TGATTCCTAAAAGCTAGTCC+AGG | 0.617478 | 2.2:+47855756 | None:intergenic |
CCTATAACCACATATATGGA+AGG | 0.620515 | 2.2:-47856469 | None:intergenic |
GACTTGCAAGTGAACATGAT+GGG | 0.621908 | 2.2:-47853755 | MS.gene026089:CDS |
TGATGAAGTTGATTACTCGA+GGG | 0.623889 | 2.2:+47854563 | None:intergenic |
ATTACTTCCTCAAGGAACAA+AGG | 0.632442 | 2.2:-47854480 | MS.gene026089:intron |
CAGAAGCTAGTGCATTTGGA+AGG | 0.633413 | 2.2:-47854712 | MS.gene026089:CDS |
GCAGATAAGTGAATGGGACG+AGG | 0.636589 | 2.2:-47851774 | MS.gene026089:intron |
AATGAGAGATCGAAATCAAG+CGG | 0.637236 | 2.2:-47854591 | MS.gene026089:CDS |
TAAAAGCTAGTCCAGGAACA+CGG | 0.640221 | 2.2:+47855763 | None:intergenic |
ATATTCAACATAAATCCACC+TGG | 0.642233 | 2.2:-47854977 | MS.gene026089:CDS |
GATGAAGTTGATTACTCGAG+GGG | 0.643129 | 2.2:+47854564 | None:intergenic |
CCAGGAAGCAGTGAGAAGAG+TGG | 0.648622 | 2.2:-47851744 | MS.gene026089:CDS |
GGTTGATGTTGATGAGAAGG+GGG | 0.653653 | 2.2:+47854758 | None:intergenic |
GAAGATGAAGATGATGAAGG+TGG | 0.654902 | 2.2:+47855052 | None:intergenic |
CGTTACATGCAAAACTCGAA+CGG | 0.655300 | 2.2:+47853814 | None:intergenic |
AATACAGACACAATTCTACC+AGG | 0.662180 | 2.2:-47855679 | MS.gene026089:intron |
GGACTTGCAAGTGAACATGA+TGG | 0.683370 | 2.2:-47853756 | MS.gene026089:CDS |
GAGTAAATATTCCACCAATG+AGG | 0.688300 | 2.2:-47854910 | MS.gene026089:CDS |
TGACTTGATACAGTCCCAAG+TGG | 0.713861 | 2.2:-47851717 | MS.gene026089:CDS |
TGAGGTGGAGAAGTTCCAGG+TGG | 0.714377 | 2.2:+47854962 | None:intergenic |
CAAATACAAATCATGCACCA+GGG | 0.722090 | 2.2:-47853646 | MS.gene026089:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAAAAAAATAAAATACG+CGG | - | chr2.2:47853947-47853966 | MS.gene026089:CDS | 10.0% |
!!! | AAAATTTAATTTATACATGA+AGG | + | chr2.2:47854842-47854861 | None:intergenic | 10.0% |
!!! | AAATATATACTTTGATAATA+TGG | + | chr2.2:47851809-47851828 | None:intergenic | 10.0% |
!!! | AAGTTTTTTTGTAATTAAAT+TGG | - | chr2.2:47852094-47852113 | MS.gene026089:intron | 10.0% |
!!! | ACTTTTTATAATAGAATTTA+TGG | + | chr2.2:47855648-47855667 | None:intergenic | 10.0% |
!!! | ATTTTCAAATTTTTCAAAAA+TGG | - | chr2.2:47855275-47855294 | MS.gene026089:intron | 10.0% |
!!! | TAAAAAGTATTTTTTTTTGA+AGG | - | chr2.2:47854793-47854812 | MS.gene026089:CDS | 10.0% |
!!! | TATTTTTTTATTTACAACAT+TGG | + | chr2.2:47853940-47853959 | None:intergenic | 10.0% |
!! | AATATTGTTTCGTTAAAAAT+TGG | - | chr2.2:47852800-47852819 | MS.gene026089:intron | 15.0% |
!! | ATATTGTTTCGTTAAAAATT+GGG | - | chr2.2:47852801-47852820 | MS.gene026089:intron | 15.0% |
!! | ATTAATTCGTGAAATAATTA+AGG | - | chr2.2:47854613-47854632 | MS.gene026089:CDS | 15.0% |
!! | TTAATTCGTGAAATAATTAA+GGG | - | chr2.2:47854614-47854633 | MS.gene026089:CDS | 15.0% |
!! | TTAGAAAAAGACATTTATTA+AGG | + | chr2.2:47852263-47852282 | None:intergenic | 15.0% |
!!! | AGTTTAGAATATAATAATGT+AGG | + | chr2.2:47851852-47851871 | None:intergenic | 15.0% |
!!! | ATTCTTTTTTTTTTTTTTGC+CGG | - | chr2.2:47852142-47852161 | MS.gene026089:intron | 15.0% |
!!! | ATTGGTTTATGTATAAAAAT+TGG | + | chr2.2:47856164-47856183 | None:intergenic | 15.0% |
!! | ACACTTATAAGTATAACTAT+GGG | + | chr2.2:47854774-47854793 | None:intergenic | 20.0% |
!! | ACATATAATGTAAATGTTGT+CGG | - | chr2.2:47852775-47852794 | MS.gene026089:intron | 20.0% |
!! | ATGATAAAAGTCCTAATATA+GGG | - | chr2.2:47853475-47853494 | MS.gene026089:intron | 20.0% |
!! | GTATACAACTTCAAATATAT+TGG | - | chr2.2:47855452-47855471 | MS.gene026089:CDS | 20.0% |
!! | TAATCTATACTCTACAAAAT+AGG | + | chr2.2:47853989-47854008 | None:intergenic | 20.0% |
!! | TAATTCGTGAAATAATTAAG+GGG | - | chr2.2:47854615-47854634 | MS.gene026089:CDS | 20.0% |
!! | TACACTTATAAGTATAACTA+TGG | + | chr2.2:47854775-47854794 | None:intergenic | 20.0% |
!! | TAGAATATAATAATGTAGGT+AGG | + | chr2.2:47851848-47851867 | None:intergenic | 20.0% |
!! | TATTGTTTCGTTAAAAATTG+GGG | - | chr2.2:47852802-47852821 | MS.gene026089:intron | 20.0% |
!! | TGATTATAAAACAACATGAT+GGG | + | chr2.2:47853722-47853741 | None:intergenic | 20.0% |
!! | TGCTATACTTGTATATATTA+AGG | - | chr2.2:47852529-47852548 | MS.gene026089:intron | 20.0% |
!! | TTGATTATAAAACAACATGA+TGG | + | chr2.2:47853723-47853742 | None:intergenic | 20.0% |
!! | TTTCTCGAAAACAATATATA+TGG | + | chr2.2:47855871-47855890 | None:intergenic | 20.0% |
!!! | AAAGATGGAAACTAATTTTA+TGG | - | chr2.2:47856331-47856350 | MS.gene026089:intron | 20.0% |
!!! | AAATATATTGGTTAAAAGGA+AGG | - | chr2.2:47855464-47855483 | MS.gene026089:CDS | 20.0% |
!!! | AACAGTTGTTTAAATTTTGA+CGG | + | chr2.2:47855179-47855198 | None:intergenic | 20.0% |
!!! | AATTTTCATCGACATAATAA+TGG | + | chr2.2:47855422-47855441 | None:intergenic | 20.0% |
!!! | ACAACTTGGTTTTTTTTTTT+TGG | - | chr2.2:47851920-47851939 | MS.gene026089:intron | 20.0% |
!!! | AGCATATCTCATTTTTTTTA+AGG | - | chr2.2:47856023-47856042 | MS.gene026089:intron | 20.0% |
!!! | AGTATAGCAATAATTTTCTT+AGG | + | chr2.2:47852518-47852537 | None:intergenic | 20.0% |
!!! | ATTTTCATCGACATAATAAT+GGG | + | chr2.2:47855421-47855440 | None:intergenic | 20.0% |
!!! | ATTTTGTGGTATGTATTATA+GGG | + | chr2.2:47856293-47856312 | None:intergenic | 20.0% |
!!! | CTTCAAATATATTGGTTAAA+AGG | - | chr2.2:47855460-47855479 | MS.gene026089:CDS | 20.0% |
!!! | TGAAAAAGTGAATTCTATTT+TGG | - | chr2.2:47855585-47855604 | MS.gene026089:intron | 20.0% |
!!! | TGGATTATTTGTTATATAGT+AGG | + | chr2.2:47855851-47855870 | None:intergenic | 20.0% |
!!! | TTCAAATTTTTCAAAAATGG+TGG | - | chr2.2:47855278-47855297 | MS.gene026089:intron | 20.0% |
! | AATCGTTTGCAAGAAAAAAT+TGG | + | chr2.2:47853846-47853865 | None:intergenic | 25.0% |
! | AATTACCAAGTTCTTCTTTA+GGG | - | chr2.2:47851992-47852011 | MS.gene026089:intron | 25.0% |
! | AATTTGAACTTTATTCTCTG+AGG | - | chr2.2:47852936-47852955 | MS.gene026089:intron | 25.0% |
! | AGAGACATTAAAAATCTTGA+CGG | + | chr2.2:47853803-47853822 | None:intergenic | 25.0% |
! | ATATAATAATGTAGGTAGGT+AGG | + | chr2.2:47851844-47851863 | None:intergenic | 25.0% |
! | ATGCATAATTATGTACCATA+AGG | - | chr2.2:47853742-47853761 | MS.gene026089:CDS | 25.0% |
! | CATGATAAAAGTCCTAATAT+AGG | - | chr2.2:47853474-47853493 | MS.gene026089:intron | 25.0% |
! | CTAAAATTTGACCCTATATT+AGG | + | chr2.2:47853489-47853508 | None:intergenic | 25.0% |
! | TTCAAAAACATTGTTCCTTA+TGG | + | chr2.2:47853760-47853779 | None:intergenic | 25.0% |
!! | AAAGTATTTATGGTTTATCG+TGG | + | chr2.2:47855216-47855235 | None:intergenic | 25.0% |
!! | AACAGCTTTTTAATCAATAC+AGG | - | chr2.2:47852025-47852044 | MS.gene026089:intron | 25.0% |
!! | AATTGATAACTCAGACAATT+AGG | - | chr2.2:47855346-47855365 | MS.gene026089:intron | 25.0% |
!! | ATAGAGAATTTTCAGTTTCT+TGG | + | chr2.2:47852619-47852638 | None:intergenic | 25.0% |
!! | GATTTTGTGGTATGTATTAT+AGG | + | chr2.2:47856294-47856313 | None:intergenic | 25.0% |
!! | TATATGACTTGTGTAATCTT+TGG | + | chr2.2:47855559-47855578 | None:intergenic | 25.0% |
!! | TCTTATATCTAGAACTAGAA+TGG | + | chr2.2:47855106-47855125 | None:intergenic | 25.0% |
!! | TTGATTTAACCACATTTTTC+CGG | - | chr2.2:47852999-47853018 | MS.gene026089:intron | 25.0% |
!! | TTTTCATCGACATAATAATG+GGG | + | chr2.2:47855420-47855439 | None:intergenic | 25.0% |
!!! | ATTACCGACTTATGTAAATA+AGG | + | chr2.2:47855255-47855274 | None:intergenic | 25.0% |
!!! | ATTGCCTTATTTACATAAGT+CGG | - | chr2.2:47855248-47855267 | MS.gene026089:intron | 25.0% |
!!! | CAATTAGGTTTTGAAAATAG+TGG | - | chr2.2:47855361-47855380 | MS.gene026089:intron | 25.0% |
!!! | CATTTTTGAAAGAGTTCAAT+TGG | + | chr2.2:47856182-47856201 | None:intergenic | 25.0% |
!!! | CTAACATTCATGTTTTTTGT+CGG | + | chr2.2:47854079-47854098 | None:intergenic | 25.0% |
!!! | GACTCTAAACTTTTAGTTAA+AGG | - | chr2.2:47855134-47855153 | MS.gene026089:intron | 25.0% |
!!! | GGATGATTATACGTTTTTTT+TGG | - | chr2.2:47854953-47854972 | MS.gene026089:CDS | 25.0% |
!!! | TAGCATGTTTTTGTTTTTAC+AGG | - | chr2.2:47852566-47852585 | MS.gene026089:intron | 25.0% |
!!! | TGATGTATTGATTCGATTAT+TGG | - | chr2.2:47854440-47854459 | MS.gene026089:intron | 25.0% |
!!! | TTTTTTGTAAGCAAAATGCT+AGG | - | chr2.2:47854932-47854951 | MS.gene026089:CDS | 25.0% |
AATATGAGAGATGAGTATTC+AGG | + | chr2.2:47853165-47853184 | None:intergenic | 30.0% | |
AGAATTGATGTCACAACAAT+TGG | - | chr2.2:47854254-47854273 | MS.gene026089:intron | 30.0% | |
ATATTAAGGCTATGTTGCTA+AGG | - | chr2.2:47852543-47852562 | MS.gene026089:intron | 30.0% | |
ATATTCAACATAAATCCACC+TGG | - | chr2.2:47853180-47853199 | MS.gene026089:intron | 30.0% | |
ATGTAAATAAGGCAATTGCT+AGG | + | chr2.2:47855244-47855263 | None:intergenic | 30.0% | |
ATTGAAGATGAAGATGATGA+AGG | + | chr2.2:47853111-47853130 | None:intergenic | 30.0% | |
CAATTACCAAGTTCTTCTTT+AGG | - | chr2.2:47851991-47852010 | MS.gene026089:intron | 30.0% | |
CATACCACAAAATCTTCATT+AGG | - | chr2.2:47856300-47856319 | MS.gene026089:intron | 30.0% | |
CATTCTCAATTTGTGTTGTA+GGG | + | chr2.2:47853341-47853360 | None:intergenic | 30.0% | |
GAAAACAAAAGAGTTTCTGA+TGG | + | chr2.2:47852234-47852253 | None:intergenic | 30.0% | |
GAATAAAGTTCAAATTCCCT+TGG | + | chr2.2:47852932-47852951 | None:intergenic | 30.0% | |
GGAAGAATATTAACCAGTAT+TGG | - | chr2.2:47856352-47856371 | MS.gene026089:intron | 30.0% | |
GTTTATGCAGATAAGTGAAT+GGG | - | chr2.2:47856377-47856396 | MS.gene026089:CDS | 30.0% | |
TACCATTTGAACTGTACTTA+CGG | + | chr2.2:47852838-47852857 | None:intergenic | 30.0% | |
TACTTCATCAAATAACCTTC+AGG | - | chr2.2:47854541-47854560 | MS.gene026089:CDS | 30.0% | |
TAGAACTAGAATGGTATGAT+CGG | + | chr2.2:47855097-47855116 | None:intergenic | 30.0% | |
TAGTCTGTCAAATGTCAATT+TGG | - | chr2.2:47855792-47855811 | MS.gene026089:intron | 30.0% | |
TCATTCTCAATTTGTGTTGT+AGG | + | chr2.2:47853342-47853361 | None:intergenic | 30.0% | |
TCTATACTCTACAAAATAGG+TGG | + | chr2.2:47853986-47854005 | None:intergenic | 30.0% | |
TGTAAATAAGGCAATTGCTA+GGG | + | chr2.2:47855243-47855262 | None:intergenic | 30.0% | |
TTCATCAGAAGATGAATCAA+TGG | - | chr2.2:47854374-47854393 | MS.gene026089:intron | 30.0% | |
TTCGTTAAAAATTGGGGAAA+AGG | - | chr2.2:47852808-47852827 | MS.gene026089:intron | 30.0% | |
TTGATTGTGCTTATACAACT+TGG | - | chr2.2:47851906-47851925 | MS.gene026089:intron | 30.0% | |
TTGTTATATAGTAGGTCGTT+TGG | + | chr2.2:47855843-47855862 | None:intergenic | 30.0% | |
! | AGAATATTAACCAGTATTGG+TGG | - | chr2.2:47856355-47856374 | MS.gene026089:intron | 30.0% |
! | ATAGTCTTTTTACAACTCCA+AGG | - | chr2.2:47852912-47852931 | MS.gene026089:intron | 30.0% |
! | TAGTCTTTTTACAACTCCAA+GGG | - | chr2.2:47852913-47852932 | MS.gene026089:intron | 30.0% |
! | TTGATCAATGATGATGACAA+AGG | + | chr2.2:47856245-47856264 | None:intergenic | 30.0% |
!!! | TCATATATTTTGGTCCACTT+GGG | + | chr2.2:47856457-47856476 | None:intergenic | 30.0% |
!!! | TTAGGTTTTGAAAATAGTGG+CGG | - | chr2.2:47855364-47855383 | MS.gene026089:intron | 30.0% |
!!! | TTTCAGACTGTTGTTTTCAT+GGG | - | chr2.2:47852679-47852698 | MS.gene026089:intron | 30.0% |
!!! | TTTTCAGACTGTTGTTTTCA+TGG | - | chr2.2:47852678-47852697 | MS.gene026089:intron | 30.0% |
!!! | TTTTGTTTTTACAGGAAGCA+AGG | - | chr2.2:47852574-47852593 | MS.gene026089:intron | 30.0% |
AAAAGTTGCCTCAATCGTAA+AGG | - | chr2.2:47855662-47855681 | MS.gene026089:intron | 35.0% | |
AAACATTATGTTGATCCGAG+TGG | - | chr2.2:47853878-47853897 | MS.gene026089:CDS | 35.0% | |
AACAAAGGAGAAATTGAGCT+TGG | - | chr2.2:47852706-47852725 | MS.gene026089:intron | 35.0% | |
AATACAGACACAATTCTACC+AGG | - | chr2.2:47852478-47852497 | MS.gene026089:intron | 35.0% | |
AATGAGAGATCGAAATCAAG+CGG | - | chr2.2:47853566-47853585 | MS.gene026089:intron | 35.0% | |
ACAAATACAAATCATGCACC+AGG | - | chr2.2:47854510-47854529 | MS.gene026089:CDS | 35.0% | |
ACATGTCAACTTGGTTTCAA+TGG | - | chr2.2:47854482-47854501 | MS.gene026089:CDS | 35.0% | |
ACCATTTGAACTGTACTTAC+GGG | + | chr2.2:47852837-47852856 | None:intergenic | 35.0% | |
ACTATTAGAAGCGAGAATCA+TGG | + | chr2.2:47852897-47852916 | None:intergenic | 35.0% | |
AGAAGATGAATCAATGGTAG+TGG | - | chr2.2:47854380-47854399 | MS.gene026089:intron | 35.0% | |
AGCACAATCAACAACTACTA+TGG | + | chr2.2:47851897-47851916 | None:intergenic | 35.0% | |
ATCAAATAACCTTCAGGCTA+AGG | - | chr2.2:47854547-47854566 | MS.gene026089:CDS | 35.0% | |
ATTACTTCCTCAAGGAACAA+AGG | - | chr2.2:47853677-47853696 | MS.gene026089:CDS | 35.0% | |
ATTCTTTCTCACACTTGAGA+TGG | - | chr2.2:47854999-47855018 | MS.gene026089:CDS | 35.0% | |
ATTGTAGAAACCATCCAAGA+AGG | + | chr2.2:47851959-47851978 | None:intergenic | 35.0% | |
CAAATACAAATCATGCACCA+GGG | - | chr2.2:47854511-47854530 | MS.gene026089:CDS | 35.0% | |
CAAGAGATTGCATTAGAGAA+CGG | + | chr2.2:47851753-47851772 | None:intergenic | 35.0% | |
CACAAAATCTTCATTAGGTG+AGG | - | chr2.2:47856305-47856324 | MS.gene026089:intron | 35.0% | |
CAGTTCAAATGGTAAAAGAC+TGG | - | chr2.2:47852844-47852863 | MS.gene026089:intron | 35.0% | |
CATTAGGTGAGGAAAAAAGA+TGG | - | chr2.2:47856316-47856335 | MS.gene026089:intron | 35.0% | |
CTATTAGAAGCGAGAATCAT+GGG | + | chr2.2:47852896-47852915 | None:intergenic | 35.0% | |
GAATATTTACTCCTCCAAGT+TGG | + | chr2.2:47853239-47853258 | None:intergenic | 35.0% | |
GAGTAAATATTCCACCAATG+AGG | - | chr2.2:47853247-47853266 | MS.gene026089:intron | 35.0% | |
GGTTTATGCAGATAAGTGAA+TGG | - | chr2.2:47856376-47856395 | MS.gene026089:CDS | 35.0% | |
GTAAAGATCTCACGATCTAA+CGG | + | chr2.2:47852321-47852340 | None:intergenic | 35.0% | |
GTCTGTCTTGAAAAATCTTC+AGG | + | chr2.2:47853066-47853085 | None:intergenic | 35.0% | |
GTTGTAGGGAATAATTGTGT+TGG | + | chr2.2:47853327-47853346 | None:intergenic | 35.0% | |
TCAACCTCAGCAAAATTATG+TGG | - | chr2.2:47853416-47853435 | MS.gene026089:intron | 35.0% | |
TCATGATCAACATGTCAACT+TGG | - | chr2.2:47854473-47854492 | MS.gene026089:intron | 35.0% | |
TGATGAAGTAAATCATTCCC+TGG | + | chr2.2:47854531-47854550 | None:intergenic | 35.0% | |
TTAGGATCAGGTGAAAATTG+AGG | + | chr2.2:47853216-47853235 | None:intergenic | 35.0% | |
TTATATAGTAGGTCGTTTGG+TGG | + | chr2.2:47855840-47855859 | None:intergenic | 35.0% | |
TTCCATACTGATAACAGCTA+AGG | - | chr2.2:47854179-47854198 | MS.gene026089:intron | 35.0% | |
! | AATTGTGTTGGTGTGATTTG+AGG | + | chr2.2:47853315-47853334 | None:intergenic | 35.0% |
! | ACGGATAAATTCAGTTCTGA+CGG | + | chr2.2:47851734-47851753 | None:intergenic | 35.0% |
! | ATGATGAAGTTGATTACTCG+AGG | + | chr2.2:47853598-47853617 | None:intergenic | 35.0% |
! | CTCACCTAATGAAGATTTTG+TGG | + | chr2.2:47856307-47856326 | None:intergenic | 35.0% |
! | GGTAGTAATGTGTTTGAAAC+AGG | + | chr2.2:47853273-47853292 | None:intergenic | 35.0% |
! | TGATGAAGTTGATTACTCGA+GGG | + | chr2.2:47853597-47853616 | None:intergenic | 35.0% |
!! | AATTGTTGCAGCTCTAAGTA+GGG | + | chr2.2:47852431-47852450 | None:intergenic | 35.0% |
!! | GAGATACTCATTAGGTTGAT+TGG | - | chr2.2:47855513-47855532 | MS.gene026089:intron | 35.0% |
!!! | GAATTCTATTTTGGCAGCTA+CGG | - | chr2.2:47855594-47855613 | MS.gene026089:intron | 35.0% |
!!! | TTCAGACTGTTGTTTTCATG+GGG | - | chr2.2:47852680-47852699 | MS.gene026089:intron | 35.0% |
AAAGTGATCTCTCGTGAATC+CGG | + | chr2.2:47852164-47852183 | None:intergenic | 40.0% | |
AAATAAGGCAATTGCTAGGG+TGG | + | chr2.2:47855240-47855259 | None:intergenic | 40.0% | |
AATAAGGCAATTGCTAGGGT+GGG | + | chr2.2:47855239-47855258 | None:intergenic | 40.0% | |
ACACTCCCTAAAGAAGAACT+TGG | + | chr2.2:47852000-47852019 | None:intergenic | 40.0% | |
AGAGATGAGTATTCAGGAGT+AGG | + | chr2.2:47853159-47853178 | None:intergenic | 40.0% | |
AGCATGTCTCATTGCAATGT+CGG | - | chr2.2:47856052-47856071 | MS.gene026089:intron | 40.0% | |
ATGAGATCACTATCAACAGC+AGG | - | chr2.2:47853129-47853148 | MS.gene026089:intron | 40.0% | |
CGTTACATGCAAAACTCGAA+CGG | + | chr2.2:47854346-47854365 | None:intergenic | 40.0% | |
CGTTCTCTAATGCAATCTCT+TGG | - | chr2.2:47851751-47851770 | MS.gene026089:CDS | 40.0% | |
CTACTCTTCCTTTACGATTG+AGG | + | chr2.2:47855673-47855692 | None:intergenic | 40.0% | |
CTACTTAGAGCTGCAACAAT+TGG | - | chr2.2:47852430-47852449 | MS.gene026089:intron | 40.0% | |
CTCCTTAGCTGTTATCAGTA+TGG | + | chr2.2:47854184-47854203 | None:intergenic | 40.0% | |
GAAGATGAAGATGATGAAGG+TGG | + | chr2.2:47853108-47853127 | None:intergenic | 40.0% | |
GAATAGTCGTTTGTCCTTCT+TGG | - | chr2.2:47851942-47851961 | MS.gene026089:intron | 40.0% | |
GACTTGCAAGTGAACATGAT+GGG | - | chr2.2:47854402-47854421 | MS.gene026089:intron | 40.0% | |
GATCGCTTAAGTAAGATCTC+AGG | - | chr2.2:47853912-47853931 | MS.gene026089:CDS | 40.0% | |
GATGCTCTCACATTTGTCTT+TGG | - | chr2.2:47851773-47851792 | MS.gene026089:CDS | 40.0% | |
GGAGACATTGAGATCTTTGA+TGG | - | chr2.2:47854200-47854219 | MS.gene026089:intron | 40.0% | |
GGCAATTGTTGAAGTTGAAG+AGG | + | chr2.2:47853294-47853313 | None:intergenic | 40.0% | |
GGCTGCATAAACTTTATCAC+AGG | - | chr2.2:47855385-47855404 | MS.gene026089:intron | 40.0% | |
GTGTGCTTGAGATACTCATT+AGG | - | chr2.2:47855505-47855524 | MS.gene026089:intron | 40.0% | |
TAAAAGCTAGTCCAGGAACA+CGG | + | chr2.2:47852397-47852416 | None:intergenic | 40.0% | |
TAGGACAACAAGTACTAACC+TGG | + | chr2.2:47852499-47852518 | None:intergenic | 40.0% | |
TCCCGTAAGTACAGTTCAAA+TGG | - | chr2.2:47852833-47852852 | MS.gene026089:intron | 40.0% | |
TCTGCATAAACCACCAATAC+TGG | + | chr2.2:47856368-47856387 | None:intergenic | 40.0% | |
TGATTCCTAAAAGCTAGTCC+AGG | + | chr2.2:47852404-47852423 | None:intergenic | 40.0% | |
TTTACAGGAAGCAAGGATCA+AGG | - | chr2.2:47852581-47852600 | MS.gene026089:intron | 40.0% | |
! | CGACATAATAATGGGGTTCT+AGG | + | chr2.2:47855413-47855432 | None:intergenic | 40.0% |
! | CTTAGAGCATTACTTCCTCA+AGG | - | chr2.2:47853669-47853688 | MS.gene026089:CDS | 40.0% |
! | GATGAAGTTGATTACTCGAG+GGG | + | chr2.2:47853596-47853615 | None:intergenic | 40.0% |
! | GGGGTGTAGATAGAACATTT+TGG | + | chr2.2:47853383-47853402 | None:intergenic | 40.0% |
! | TGTGCCACATAATTTTGCTG+AGG | + | chr2.2:47853423-47853442 | None:intergenic | 40.0% |
!! | AGGTTGATGTTGATGAGAAG+GGG | + | chr2.2:47853403-47853422 | None:intergenic | 40.0% |
!! | CAATTGTTGCAGCTCTAAGT+AGG | + | chr2.2:47852432-47852451 | None:intergenic | 40.0% |
!! | CGTTCGAGTTTTGCATGTAA+CGG | - | chr2.2:47854344-47854363 | MS.gene026089:intron | 40.0% |
!! | CTAGGGTGGGAAAGTATTTA+TGG | + | chr2.2:47855226-47855245 | None:intergenic | 40.0% |
!! | GAGGTTGATGTTGATGAGAA+GGG | + | chr2.2:47853404-47853423 | None:intergenic | 40.0% |
!! | GTTCGAGTTTTGCATGTAAC+GGG | - | chr2.2:47854345-47854364 | MS.gene026089:intron | 40.0% |
!! | TGAGGTTGATGTTGATGAGA+AGG | + | chr2.2:47853405-47853424 | None:intergenic | 40.0% |
!! | TTCGAGTTTTGCATGTAACG+GGG | - | chr2.2:47854346-47854365 | MS.gene026089:intron | 40.0% |
!! | TTTACTCCTCCAAGTTGGTT+AGG | + | chr2.2:47853234-47853253 | None:intergenic | 40.0% |
AATTGAGGTGGAGAAGTTCC+AGG | + | chr2.2:47853201-47853220 | None:intergenic | 45.0% | |
AGATTCGCTCTTCAACCTTG+TGG | - | chr2.2:47852190-47852209 | MS.gene026089:intron | 45.0% | |
AGTCGTTTGTCCTTCTTGGA+TGG | - | chr2.2:47851946-47851965 | MS.gene026089:intron | 45.0% | |
CAGAAGCTAGTGCATTTGGA+AGG | - | chr2.2:47853445-47853464 | MS.gene026089:intron | 45.0% | |
CATCCAGAAGCTAGTGCATT+TGG | - | chr2.2:47853441-47853460 | MS.gene026089:intron | 45.0% | |
CTCTTCAACCTTGTGGTTCT+CGG | - | chr2.2:47852197-47852216 | MS.gene026089:intron | 45.0% | |
CTGAGTAATCCTTAGCCTGA+AGG | + | chr2.2:47854559-47854578 | None:intergenic | 45.0% | |
CTTCAGGCTAAGGATTACTC+AGG | - | chr2.2:47854557-47854576 | MS.gene026089:CDS | 45.0% | |
GGACTTGCAAGTGAACATGA+TGG | - | chr2.2:47854401-47854420 | MS.gene026089:intron | 45.0% | |
GGATCAGGTGAAAATTGAGG+TGG | + | chr2.2:47853213-47853232 | None:intergenic | 45.0% | |
GTACGTACCTTTGTTCCTTG+AGG | + | chr2.2:47853687-47853706 | None:intergenic | 45.0% | |
TCACCTGATCCTAACCAACT+TGG | - | chr2.2:47853222-47853241 | MS.gene026089:intron | 45.0% | |
TGACTTGATACAGTCCCAAG+TGG | - | chr2.2:47856440-47856459 | MS.gene026089:CDS | 45.0% | |
! | AATTCAGTTCTGACGGCTAC+AGG | + | chr2.2:47851727-47851746 | None:intergenic | 45.0% |
! | CTTCCAAATGCACTAGCTTC+TGG | + | chr2.2:47853447-47853466 | None:intergenic | 45.0% |
! | GATCTGAGTCTAGTTCCACT+CGG | + | chr2.2:47853896-47853915 | None:intergenic | 45.0% |
! | GGTTGATGTTGATGAGAAGG+GGG | + | chr2.2:47853402-47853421 | None:intergenic | 45.0% |
! | GTGTTTGAAACAGGCCTCAT+TGG | + | chr2.2:47853264-47853283 | None:intergenic | 45.0% |
! | GTTTTCATGGGGTGCAACAA+AGG | - | chr2.2:47852691-47852710 | MS.gene026089:intron | 45.0% |
! | TTTGAAACAGGCCTCATTGG+TGG | + | chr2.2:47853261-47853280 | None:intergenic | 45.0% |
!!! | GTGTTCCTGGACTAGCTTTT+AGG | - | chr2.2:47852396-47852415 | MS.gene026089:intron | 45.0% |
!!! | GTTTTGTTTAGCCGTGTTCC+TGG | - | chr2.2:47852383-47852402 | MS.gene026089:intron | 45.0% |
!!! | AAATTAAATTTTAATATTTG+TGG | - | chr2.2:47854850-47854869 | MS.gene026089:CDS | 5.0% |
!!! | ATTTATATTAATTTTTTTAG+AGG | - | chr2.2:47855931-47855950 | MS.gene026089:intron | 5.0% |
CCTGATCCTAACCAACTTGG+AGG | - | chr2.2:47853225-47853244 | MS.gene026089:intron | 50.0% | |
GCAGATAAGTGAATGGGACG+AGG | - | chr2.2:47856383-47856402 | MS.gene026089:CDS | 50.0% | |
TCTTCTCACTGCTTCCTGGA+AGG | + | chr2.2:47856412-47856431 | None:intergenic | 50.0% | |
TGCGCAGGCGGATATTCAAA+CGG | - | chr2.2:47853023-47853042 | MS.gene026089:intron | 50.0% | |
! | AGTTCTGACGGCTACAGGAA+GGG | + | chr2.2:47851722-47851741 | None:intergenic | 50.0% |
!! | CCTCCAAGTTGGTTAGGATC+AGG | + | chr2.2:47853228-47853247 | None:intergenic | 50.0% |
CCACTCTTCTCACTGCTTCC+TGG | + | chr2.2:47856416-47856435 | None:intergenic | 55.0% | |
CCAGGAAGCAGTGAGAAGAG+TGG | - | chr2.2:47856413-47856432 | MS.gene026089:CDS | 55.0% | |
GTCTCGAACCGAGAACCACA+AGG | + | chr2.2:47852208-47852227 | None:intergenic | 55.0% | |
TGAGGTGGAGAAGTTCCAGG+TGG | + | chr2.2:47853198-47853217 | None:intergenic | 55.0% | |
! | CAGTTCTGACGGCTACAGGA+AGG | + | chr2.2:47851723-47851742 | None:intergenic | 55.0% |
ATGGGACGAGGAAGCCTTCC+AGG | - | chr2.2:47856395-47856414 | MS.gene026089:CDS | 60.0% | |
CCTGCGCAGCCGGAAAAATG+TGG | + | chr2.2:47853011-47853030 | None:intergenic | 60.0% | |
TGAATATCCGCCTGCGCAGC+CGG | + | chr2.2:47853021-47853040 | None:intergenic | 60.0% | |
! | CATTTTTCCGGCTGCGCAGG+CGG | - | chr2.2:47853011-47853030 | MS.gene026089:intron | 60.0% |
! | CCACATTTTTCCGGCTGCGC+AGG | - | chr2.2:47853008-47853027 | MS.gene026089:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 47851703 | 47856476 | 47851703 | ID=MS.gene026089 |
chr2.2 | mRNA | 47851703 | 47856476 | 47851703 | ID=MS.gene026089.t1;Parent=MS.gene026089 |
chr2.2 | exon | 47856361 | 47856476 | 47856361 | ID=MS.gene026089.t1.exon1;Parent=MS.gene026089.t1 |
chr2.2 | CDS | 47856361 | 47856476 | 47856361 | ID=cds.MS.gene026089.t1;Parent=MS.gene026089.t1 |
chr2.2 | exon | 47856106 | 47856231 | 47856106 | ID=MS.gene026089.t1.exon2;Parent=MS.gene026089.t1 |
chr2.2 | CDS | 47856106 | 47856231 | 47856106 | ID=cds.MS.gene026089.t1;Parent=MS.gene026089.t1 |
chr2.2 | exon | 47855680 | 47855785 | 47855680 | ID=MS.gene026089.t1.exon3;Parent=MS.gene026089.t1 |
chr2.2 | CDS | 47855680 | 47855785 | 47855680 | ID=cds.MS.gene026089.t1;Parent=MS.gene026089.t1 |
chr2.2 | exon | 47855577 | 47855591 | 47855577 | ID=MS.gene026089.t1.exon4;Parent=MS.gene026089.t1 |
chr2.2 | CDS | 47855577 | 47855591 | 47855577 | ID=cds.MS.gene026089.t1;Parent=MS.gene026089.t1 |
chr2.2 | exon | 47855432 | 47855494 | 47855432 | ID=MS.gene026089.t1.exon5;Parent=MS.gene026089.t1 |
chr2.2 | CDS | 47855432 | 47855494 | 47855432 | ID=cds.MS.gene026089.t1;Parent=MS.gene026089.t1 |
chr2.2 | exon | 47854481 | 47855149 | 47854481 | ID=MS.gene026089.t1.exon6;Parent=MS.gene026089.t1 |
chr2.2 | CDS | 47854481 | 47855149 | 47854481 | ID=cds.MS.gene026089.t1;Parent=MS.gene026089.t1 |
chr2.2 | exon | 47853601 | 47854011 | 47853601 | ID=MS.gene026089.t1.exon7;Parent=MS.gene026089.t1 |
chr2.2 | CDS | 47853601 | 47854011 | 47853601 | ID=cds.MS.gene026089.t1;Parent=MS.gene026089.t1 |
chr2.2 | exon | 47851703 | 47851792 | 47851703 | ID=MS.gene026089.t1.exon8;Parent=MS.gene026089.t1 |
chr2.2 | CDS | 47851703 | 47851792 | 47851703 | ID=cds.MS.gene026089.t1;Parent=MS.gene026089.t1 |
Gene Sequence |
Protein sequence |