AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026099

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026099.t1 MTR_2g039880 95.719 584 25 0 1 584 1 584 0.0 1100
MS.gene026099.t1 MTR_2g028950 45.369 529 262 9 46 556 45 564 5.79e-146 434
MS.gene026099.t1 MTR_5g090770 39.576 566 310 11 13 561 21 571 2.03e-126 384
MS.gene026099.t1 MTR_2g028950 44.946 465 230 8 46 492 45 501 2.59e-123 373
MS.gene026099.t1 MTR_5g090770 42.439 410 213 7 46 440 48 449 2.87e-98 306
MS.gene026099.t1 MTR_1g051025 31.267 371 213 8 65 400 24 387 2.45e-38 148
MS.gene026099.t1 MTR_7g090020 30.914 372 214 7 65 400 24 388 3.54e-37 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026099.t1 AT1G64280 53.992 526 219 6 46 556 46 563 0.0 551
MS.gene026099.t1 AT4G26120 49.913 573 255 10 12 567 16 573 2.79e-176 512
MS.gene026099.t1 AT4G26120 49.913 573 255 10 12 567 15 572 4.26e-176 511
MS.gene026099.t1 AT5G45110 42.830 530 271 11 46 554 41 559 2.29e-124 379
MS.gene026099.t1 AT4G19660 41.636 550 276 14 29 553 22 551 5.30e-124 377
MS.gene026099.t1 AT4G19660 39.861 577 275 15 29 553 22 578 9.17e-119 365
MS.gene026099.t1 AT5G45110 42.062 485 249 11 46 512 41 511 5.71e-110 339
MS.gene026099.t1 AT3G57130 31.806 371 208 9 65 400 26 386 5.62e-41 155
MS.gene026099.t1 AT2G41370 30.851 376 213 9 65 400 25 393 2.58e-36 142

Find 97 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGAATTTACTCCGAATT+TGG 0.080716 2.2:+47717646 MS.gene026099:CDS
TGCGAGGAGTAGTTTCTTTA+AGG 0.142531 2.2:+47716117 MS.gene026099:CDS
ACTAAACATTCTTGATAAAA+TGG 0.238573 2.2:+47716687 MS.gene026099:CDS
GCGCTTCACTTGTCGATCTT+CGG 0.290085 2.2:-47718135 None:intergenic
AGAATTGCTTGCTCTTTATC+AGG 0.305066 2.2:+47716384 MS.gene026099:CDS
TATATTACTTGTTTCACTAT+AGG 0.308533 2.2:-47716847 None:intergenic
ATGTTTGTCTAGAAGATTTA+CGG 0.318420 2.2:-47716905 None:intergenic
ATCTAAAGCTCTATGTATTC+TGG 0.325893 2.2:-47716932 None:intergenic
CGCTTCACTTGTCGATCTTC+GGG 0.329375 2.2:-47718134 None:intergenic
GCTACAAGAAGTTCTTAATA+AGG 0.338445 2.2:+47718172 MS.gene026099:CDS
ACTACTGAGCTTCTTGATCT+TGG 0.343475 2.2:+47717060 MS.gene026099:CDS
TCGATTGTGTATCGAGATAT+TGG 0.362910 2.2:+47717302 MS.gene026099:CDS
TCTGAATTTACTCCGAATTT+GGG 0.369283 2.2:+47717647 MS.gene026099:CDS
TCATCTTGAGCAGTGGAGTT+GGG 0.376033 2.2:+47718020 MS.gene026099:intron
AATTCAGATGTGCCATCAAT+TGG 0.381830 2.2:-47717632 None:intergenic
AAAGAGGAGTTTGATAAATC+TGG 0.386748 2.2:+47718209 MS.gene026099:CDS
GTGACTAAGGATTATGATGT+TGG 0.390092 2.2:+47716184 MS.gene026099:CDS
GCTTCAATACTAGATGATAC+AGG 0.395717 2.2:+47716019 MS.gene026099:CDS
TCATCCTCATCCACGTCAAT+AGG 0.401640 2.2:+47718242 MS.gene026099:CDS
ATTGTTTACACTTTGGTTGT+TGG 0.402392 2.2:+47716305 MS.gene026099:CDS
CTCTGGTAACCACCCAAATT+CGG 0.409123 2.2:-47717659 None:intergenic
ATATACAAACGCAAACAATT+AGG 0.413643 2.2:+47716865 MS.gene026099:CDS
CAAACTCCTCTTTGTCCTCA+TGG 0.421934 2.2:-47718199 None:intergenic
TAAAAGAGGAGCATCTAATT+CGG 0.429046 2.2:+47717717 MS.gene026099:CDS
TCTCTTTCTCTTGCTAAGGC+AGG 0.429539 2.2:+47717363 MS.gene026099:CDS
CTCTTTCTCTTGCTAAGGCA+GGG 0.442710 2.2:+47717364 MS.gene026099:CDS
GTCATCTTGAGCAGTGGAGT+TGG 0.451507 2.2:+47718019 MS.gene026099:intron
GGCATCTCTTTCTCTTGCTA+AGG 0.467473 2.2:+47717359 MS.gene026099:CDS
CCTATCGCAGCTTGCATGCA+TGG 0.468067 2.2:+47718100 MS.gene026099:CDS
GAAGTAGTAGTAATTGAATT+CGG 0.468391 2.2:-47715944 None:intergenic
TGGTTACCAGAGGACAACTA+TGG 0.474344 2.2:+47717670 MS.gene026099:CDS
ATGGATATCAATCCAATTGA+TGG 0.475189 2.2:+47717620 MS.gene026099:CDS
TGACTAAGGATTATGATGTT+GGG 0.476464 2.2:+47716185 MS.gene026099:CDS
CTTTCTATAGCAAACGTTTG+TGG 0.477691 2.2:+47716733 MS.gene026099:CDS
TGAAGCATGAAATCAACAAC+GGG 0.507862 2.2:-47716328 None:intergenic
ATCACAACCTTTGCTTCCAT+CGG 0.509584 2.2:-47717599 None:intergenic
GCAACTGAAGGAAGTGACTA+AGG 0.511330 2.2:+47716171 MS.gene026099:CDS
GAGCAGTGGAGTTGGGGAAA+CGG 0.514130 2.2:+47718027 MS.gene026099:intron
CTTTCCTATTGACGTGGATG+AGG 0.515811 2.2:-47718246 None:intergenic
AGAAGTGTTGAACAAGATCA+TGG 0.517746 2.2:+47718067 MS.gene026099:CDS
TCTTTCTCTTGCTAAGGCAG+GGG 0.519191 2.2:+47717365 MS.gene026099:CDS
ATTGGAGCAAGCTGAGAGAA+GGG 0.524671 2.2:+47717320 MS.gene026099:CDS
GATGATGATTGTTTACACTT+TGG 0.524715 2.2:+47716298 MS.gene026099:CDS
GCAAAGATCATTGTCAAAGA+TGG 0.524720 2.2:+47716061 MS.gene026099:CDS
TTTGACAATGATCTTTGCAT+CGG 0.525100 2.2:-47716056 None:intergenic
ATTGTATCTTTGTTAACGAA+GGG 0.525145 2.2:+47717162 MS.gene026099:CDS
GTCGAGAAGTTTCTGTGCAC+CGG 0.525175 2.2:+47716083 MS.gene026099:CDS
TCAAGTCCATAGTTGTCCTC+TGG 0.525929 2.2:-47717676 None:intergenic
GTAATGATGTACTTGAGAAG+TGG 0.540852 2.2:+47715857 None:intergenic
TATTGGAGCAAGCTGAGAGA+AGG 0.543360 2.2:+47717319 MS.gene026099:CDS
TATTATAAATCTACTGAGGA+AGG 0.543578 2.2:+47717261 MS.gene026099:CDS
AAGCAATTCTGAAATTTGAA+AGG 0.544332 2.2:-47716371 None:intergenic
CTTCAATACTAGATGATACA+GGG 0.545159 2.2:+47716020 MS.gene026099:CDS
CATCTTGAGCAGTGGAGTTG+GGG 0.545384 2.2:+47718021 MS.gene026099:intron
ACTTGTTTCACTATAGGTTG+AGG 0.548262 2.2:-47716841 None:intergenic
TAAATCTACTGAGGAAGGAA+AGG 0.549862 2.2:+47717266 MS.gene026099:CDS
GGCACCATTTAAAATAAAAG+AGG 0.551112 2.2:+47717703 MS.gene026099:CDS
TATTGTATCTTTGTTAACGA+AGG 0.551812 2.2:+47717161 MS.gene026099:CDS
CCTTCTGAACTCACTTTCGA+TGG 0.555532 2.2:+47717192 MS.gene026099:CDS
ATGAAGGCATTATCTAGAGC+AGG 0.556683 2.2:+47717740 MS.gene026099:CDS
CCTTGACTTTCCTATTGACG+TGG 0.557026 2.2:-47718252 None:intergenic
GGAGCATCTAATTCGGATGA+AGG 0.559476 2.2:+47717724 MS.gene026099:CDS
TGCAAGCTGCGATAGGTCAT+CGG 0.560452 2.2:-47718093 None:intergenic
CTATCGCAGCTTGCATGCAT+GGG 0.560772 2.2:+47718101 MS.gene026099:CDS
AGAAACGATGCTGCAACTGA+AGG 0.567744 2.2:+47716159 MS.gene026099:CDS
CCATGCATGCAAGCTGCGAT+AGG 0.568643 2.2:-47718100 None:intergenic
AGAGATGCCTCACCATGTAA+AGG 0.569360 2.2:-47717345 None:intergenic
GAGAGAAGGGAGCCTTTACA+TGG 0.569857 2.2:+47717333 MS.gene026099:CDS
CCATCGAAAGTGAGTTCAGA+AGG 0.573318 2.2:-47717192 None:intergenic
CAGATGATGTAGAGTTAGCA+AGG 0.573635 2.2:+47716956 MS.gene026099:CDS
TAAAGATGTTTGTGTTTGTG+TGG 0.576566 2.2:+47716276 MS.gene026099:CDS
TTTGTTTCCGATGGAAGCAA+AGG 0.576921 2.2:+47717592 MS.gene026099:CDS
GACAACTATGGACTTGAATG+AGG 0.586182 2.2:+47717682 MS.gene026099:CDS
GAATTTACTCCGAATTTGGG+TGG 0.590924 2.2:+47717650 MS.gene026099:CDS
GATGGAAGCAAAGGTTGTGA+TGG 0.592814 2.2:+47717601 MS.gene026099:CDS
CCACGTCAATAGGAAAGTCA+AGG 0.595019 2.2:+47718252 MS.gene026099:CDS
AACGAAATCAGCAACAACAC+TGG 0.604355 2.2:+47715896 MS.gene026099:CDS
AAGCAAGATTGTCTGAGAGA+CGG 0.608260 2.2:-47716000 None:intergenic
TCCTCGCAGACAAAATGCAC+CGG 0.610061 2.2:-47716102 None:intergenic
AAAGCGTAGTACGAAAGCTG+TGG 0.616351 2.2:+47717236 MS.gene026099:CDS
AAGGGAGCCTTTACATGGTG+AGG 0.619314 2.2:+47717338 MS.gene026099:CDS
GGCAATAGATGACATGTTGG+TGG 0.623200 2.2:+47716708 MS.gene026099:CDS
CACGTCAATAGGAAAGTCAA+GGG 0.630823 2.2:+47718253 MS.gene026099:CDS
CGAATTTGGGTGGTTACCAG+AGG 0.630852 2.2:+47717660 MS.gene026099:CDS
AATGGCAATAGATGACATGT+TGG 0.633106 2.2:+47716705 MS.gene026099:CDS
AAGATCAAGAAGCTCAGTAG+TGG 0.633228 2.2:-47717058 None:intergenic
CATGTGATAAACTACTAACA+AGG 0.637446 2.2:+47716761 MS.gene026099:CDS
GGTCTTCCATGAGGACAAAG+AGG 0.638424 2.2:+47718193 MS.gene026099:CDS
AGTGAAGCGCAGACGATACG+CGG 0.639553 2.2:+47718148 MS.gene026099:CDS
TTGTCTGAGAGACGGTTCAG+TGG 0.643852 2.2:-47715992 None:intergenic
GTTCTGCGTTATTTGTATAG+CGG 0.654687 2.2:+47716226 MS.gene026099:CDS
TTGAAGCATGAAATCAACAA+CGG 0.654728 2.2:-47716329 None:intergenic
AGGACACACTACTCTAGATG+AGG 0.655016 2.2:+47716993 MS.gene026099:CDS
TCTTAATAAGGTCTTCCATG+AGG 0.672788 2.2:+47718184 MS.gene026099:CDS
GGATTATTATAAATCTACTG+AGG 0.714422 2.2:+47717257 MS.gene026099:CDS
TTCAACACTTCTGAGCAACG+AGG 0.719258 2.2:-47718056 None:intergenic
TTGTTGTACCTAGAAAACCG+AGG 0.809311 2.2:+47717405 MS.gene026099:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTATAGTAATTTCATA+GGG + chr2.2:47716455-47716474 MS.gene026099:intron 15.0%
!! AGCAAAATTTAACAAATAAA+TGG - chr2.2:47717969-47717988 None:intergenic 15.0%
!! ATGTAAATCATAAAAATCTT+AGG + chr2.2:47717091-47717110 MS.gene026099:CDS 15.0%
!! TAATTTAACTAAAAGATCAT+AGG - chr2.2:47716594-47716613 None:intergenic 15.0%
!! TGTAAATCATAAAAATCTTA+GGG + chr2.2:47717092-47717111 MS.gene026099:CDS 15.0%
!!! AACAAAGATACAATAATTTT+CGG - chr2.2:47717156-47717175 None:intergenic 15.0%
!!! AAGATTTTTATGATTTACAT+CGG - chr2.2:47717091-47717110 None:intergenic 15.0%
!!! CATTTTAGATTTAAATACAA+TGG - chr2.2:47717847-47717866 None:intergenic 15.0%
!! AAGTTATAGTAATTTCATAG+GGG + chr2.2:47716456-47716475 MS.gene026099:intron 20.0%
!! ACTAAACATTCTTGATAAAA+TGG + chr2.2:47716687-47716706 MS.gene026099:CDS 20.0%
!! GAAAGTTATAGTAATTTCAT+AGG + chr2.2:47716454-47716473 MS.gene026099:intron 20.0%
!! GTAAAGAAAGAAAAATAGAA+TGG - chr2.2:47717873-47717892 None:intergenic 20.0%
!! GTAAATCATAAAAATCTTAG+GGG + chr2.2:47717093-47717112 MS.gene026099:CDS 20.0%
!! TATATTACTTGTTTCACTAT+AGG - chr2.2:47716850-47716869 None:intergenic 20.0%
!! TCAAAAATAAAACGAAAGAT+GGG - chr2.2:47717782-47717801 None:intergenic 20.0%
!! TCAACATTTATTGTGAAATT+CGG - chr2.2:47717530-47717549 None:intergenic 20.0%
!! TTTCATTATACGTTAGATAT+CGG + chr2.2:47717940-47717959 MS.gene026099:intron 20.0%
!!! TTCTTTAAGGATGTTTTTAA+GGG + chr2.2:47716130-47716149 MS.gene026099:CDS 20.0%
!!! TTCTTTTTTTTCGATAAATG+TGG + chr2.2:47717469-47717488 MS.gene026099:intron 20.0%
!!! TTTCTTTAAGGATGTTTTTA+AGG + chr2.2:47716129-47716148 MS.gene026099:CDS 20.0%
! ATATACAAACGCAAACAATT+AGG + chr2.2:47716865-47716884 MS.gene026099:CDS 25.0%
! ATCTAACGTATAATGAAAAC+TGG - chr2.2:47717938-47717957 None:intergenic 25.0%
! ATGTTTGTCTAGAAGATTTA+CGG - chr2.2:47716908-47716927 None:intergenic 25.0%
! ATTGTATCTTTGTTAACGAA+GGG + chr2.2:47717162-47717181 MS.gene026099:CDS 25.0%
! CAACATTTATTGTGAAATTC+GGG - chr2.2:47717529-47717548 None:intergenic 25.0%
! CTCAAAAATAAAACGAAAGA+TGG - chr2.2:47717783-47717802 None:intergenic 25.0%
! GAAGTAGTAGTAATTGAATT+CGG - chr2.2:47715947-47715966 None:intergenic 25.0%
! GGATTATTATAAATCTACTG+AGG + chr2.2:47717257-47717276 MS.gene026099:CDS 25.0%
! GTTCGAAAACAATTGATATA+GGG + chr2.2:47717911-47717930 MS.gene026099:intron 25.0%
! TATTATAAATCTACTGAGGA+AGG + chr2.2:47717261-47717280 MS.gene026099:CDS 25.0%
! TATTGTATCTTTGTTAACGA+AGG + chr2.2:47717161-47717180 MS.gene026099:CDS 25.0%
! TTTCTTTACTTGTATCTATC+TGG + chr2.2:47717884-47717903 MS.gene026099:intron 25.0%
!!! AAGCAATTCTGAAATTTGAA+AGG - chr2.2:47716374-47716393 None:intergenic 25.0%
!!! TGCTCCTCTTTTATTTTAAA+TGG - chr2.2:47717710-47717729 None:intergenic 25.0%
AAAGAGGAGTTTGATAAATC+TGG + chr2.2:47718209-47718228 MS.gene026099:CDS 30.0%
AGTACTTTCTTAAAAGTCGA+AGG + chr2.2:47717801-47717820 MS.gene026099:intron 30.0%
ATCTGAATTTACTCCGAATT+TGG + chr2.2:47717646-47717665 MS.gene026099:CDS 30.0%
ATGGATATCAATCCAATTGA+TGG + chr2.2:47717620-47717639 MS.gene026099:CDS 30.0%
ATTGTTTACACTTTGGTTGT+TGG + chr2.2:47716305-47716324 MS.gene026099:CDS 30.0%
CATGTGATAAACTACTAACA+AGG + chr2.2:47716761-47716780 MS.gene026099:CDS 30.0%
CTTCAATACTAGATGATACA+GGG + chr2.2:47716020-47716039 MS.gene026099:CDS 30.0%
GAACATGTAAGAAAATACCT+CGG - chr2.2:47717425-47717444 None:intergenic 30.0%
GATGATGATTGTTTACACTT+TGG + chr2.2:47716298-47716317 MS.gene026099:CDS 30.0%
GCTACAAGAAGTTCTTAATA+AGG + chr2.2:47718172-47718191 MS.gene026099:CDS 30.0%
GGTTCGAAAACAATTGATAT+AGG + chr2.2:47717910-47717929 MS.gene026099:intron 30.0%
TAAAGATGTTTGTGTTTGTG+TGG + chr2.2:47716276-47716295 MS.gene026099:CDS 30.0%
TCTGAATTTACTCCGAATTT+GGG + chr2.2:47717647-47717666 MS.gene026099:CDS 30.0%
TGACTAAGGATTATGATGTT+GGG + chr2.2:47716185-47716204 MS.gene026099:CDS 30.0%
TTACTTGTATCTATCTGGTT+CGG + chr2.2:47717889-47717908 MS.gene026099:intron 30.0%
TTGAAGCATGAAATCAACAA+CGG - chr2.2:47716332-47716351 None:intergenic 30.0%
TTTGACAATGATCTTTGCAT+CGG - chr2.2:47716059-47716078 None:intergenic 30.0%
! ATCTAAAGCTCTATGTATTC+TGG - chr2.2:47716935-47716954 None:intergenic 30.0%
! GGCACCATTTAAAATAAAAG+AGG + chr2.2:47717703-47717722 MS.gene026099:CDS 30.0%
!! ACGATTCATTGTTTTTCAGT+TGG + chr2.2:47717557-47717576 MS.gene026099:intron 30.0%
!! TAAAAGAGGAGCATCTAATT+CGG + chr2.2:47717717-47717736 MS.gene026099:CDS 30.0%
!! TAGTTGATTTGATTACTTGC+AGG + chr2.2:47716657-47716676 MS.gene026099:intron 30.0%
AAGATCATAGGTTCAAGTCT+CGG - chr2.2:47716582-47716601 None:intergenic 35.0%
AATGGCAATAGATGACATGT+TGG + chr2.2:47716705-47716724 MS.gene026099:CDS 35.0%
AATTCAGATGTGCCATCAAT+TGG - chr2.2:47717635-47717654 None:intergenic 35.0%
ACTTGTTTCACTATAGGTTG+AGG - chr2.2:47716844-47716863 None:intergenic 35.0%
AGAATTGCTTGCTCTTTATC+AGG + chr2.2:47716384-47716403 MS.gene026099:CDS 35.0%
AGCCTCTTGTGTAAAAAACA+GGG - chr2.2:47716555-47716574 None:intergenic 35.0%
CTTTCTATAGCAAACGTTTG+TGG + chr2.2:47716733-47716752 MS.gene026099:CDS 35.0%
GCAAAGATCATTGTCAAAGA+TGG + chr2.2:47716061-47716080 MS.gene026099:CDS 35.0%
GCTTCAATACTAGATGATAC+AGG + chr2.2:47716019-47716038 MS.gene026099:CDS 35.0%
GTGACTAAGGATTATGATGT+TGG + chr2.2:47716184-47716203 MS.gene026099:CDS 35.0%
GTTCTGCGTTATTTGTATAG+CGG + chr2.2:47716226-47716245 MS.gene026099:CDS 35.0%
TAAATCTACTGAGGAAGGAA+AGG + chr2.2:47717266-47717285 MS.gene026099:CDS 35.0%
TCGATTGTGTATCGAGATAT+TGG + chr2.2:47717302-47717321 MS.gene026099:CDS 35.0%
TCTTAATAAGGTCTTCCATG+AGG + chr2.2:47718184-47718203 MS.gene026099:CDS 35.0%
TGAAGCATGAAATCAACAAC+GGG - chr2.2:47716331-47716350 None:intergenic 35.0%
! AGAAAATACCTCGGTTTTCT+AGG - chr2.2:47717416-47717435 None:intergenic 35.0%
! ATTTTTGTCATCTTGAGCAG+TGG + chr2.2:47718013-47718032 MS.gene026099:intron 35.0%
!! AGAAGTGTTGAACAAGATCA+TGG + chr2.2:47718067-47718086 MS.gene026099:CDS 35.0%
!! AGCAAAACTTTTGTTTCCGA+TGG + chr2.2:47717583-47717602 MS.gene026099:CDS 35.0%
!! CCATTTTGCTTTATTGTACG+CGG + chr2.2:47716524-47716543 MS.gene026099:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + chr2.2:47716550-47716569 MS.gene026099:intron 35.0%
AACGAAATCAGCAACAACAC+TGG + chr2.2:47715896-47715915 MS.gene026099:CDS 40.0%
AAGATCAAGAAGCTCAGTAG+TGG - chr2.2:47717061-47717080 None:intergenic 40.0%
AAGCAAGATTGTCTGAGAGA+CGG - chr2.2:47716003-47716022 None:intergenic 40.0%
ACTACTGAGCTTCTTGATCT+TGG + chr2.2:47717060-47717079 MS.gene026099:CDS 40.0%
ATCACAACCTTTGCTTCCAT+CGG - chr2.2:47717602-47717621 None:intergenic 40.0%
CACGTCAATAGGAAAGTCAA+GGG + chr2.2:47718253-47718272 MS.gene026099:CDS 40.0%
CAGATGATGTAGAGTTAGCA+AGG + chr2.2:47716956-47716975 MS.gene026099:CDS 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG - chr2.2:47716556-47716575 None:intergenic 40.0%
CCGCGTACAATAAAGCAAAA+TGG - chr2.2:47716527-47716546 None:intergenic 40.0%
GAATTTACTCCGAATTTGGG+TGG + chr2.2:47717650-47717669 MS.gene026099:CDS 40.0%
GACAACTATGGACTTGAATG+AGG + chr2.2:47717682-47717701 MS.gene026099:CDS 40.0%
TGCGAGGAGTAGTTTCTTTA+AGG + chr2.2:47716117-47716136 MS.gene026099:CDS 40.0%
TTCGGGAGTAACATATGTCA+AGG - chr2.2:47717512-47717531 None:intergenic 40.0%
TTGTTGTACCTAGAAAACCG+AGG + chr2.2:47717405-47717424 MS.gene026099:CDS 40.0%
TTTGTTTCCGATGGAAGCAA+AGG + chr2.2:47717592-47717611 MS.gene026099:CDS 40.0%
!! ATGAAGGCATTATCTAGAGC+AGG + chr2.2:47717740-47717759 MS.gene026099:CDS 40.0%
!!! AGGCAGTGATTTTTCAAGAG+TGG - chr2.2:47716824-47716843 None:intergenic 40.0%
!!! GCAAGGTTGCTTTTGAAAGA+AGG + chr2.2:47716973-47716992 MS.gene026099:CDS 40.0%
AAAGCGTAGTACGAAAGCTG+TGG + chr2.2:47717236-47717255 MS.gene026099:CDS 45.0%
AGAAACGATGCTGCAACTGA+AGG + chr2.2:47716159-47716178 MS.gene026099:CDS 45.0%
AGAGATGCCTCACCATGTAA+AGG - chr2.2:47717348-47717367 None:intergenic 45.0%
AGGACACACTACTCTAGATG+AGG + chr2.2:47716993-47717012 MS.gene026099:CDS 45.0%
ATTGGAGCAAGCTGAGAGAA+GGG + chr2.2:47717320-47717339 MS.gene026099:CDS 45.0%
CAAACTCCTCTTTGTCCTCA+TGG - chr2.2:47718202-47718221 None:intergenic 45.0%
CCACGTCAATAGGAAAGTCA+AGG + chr2.2:47718252-47718271 MS.gene026099:CDS 45.0%
CCATCGAAAGTGAGTTCAGA+AGG - chr2.2:47717195-47717214 None:intergenic 45.0%
CCTTCTGAACTCACTTTCGA+TGG + chr2.2:47717192-47717211 MS.gene026099:CDS 45.0%
CCTTGACTTTCCTATTGACG+TGG - chr2.2:47718255-47718274 None:intergenic 45.0%
CTCTGGTAACCACCCAAATT+CGG - chr2.2:47717662-47717681 None:intergenic 45.0%
CTCTTTCTCTTGCTAAGGCA+GGG + chr2.2:47717364-47717383 MS.gene026099:CDS 45.0%
CTTTCCTATTGACGTGGATG+AGG - chr2.2:47718249-47718268 None:intergenic 45.0%
GATGGAAGCAAAGGTTGTGA+TGG + chr2.2:47717601-47717620 MS.gene026099:CDS 45.0%
GCAACTGAAGGAAGTGACTA+AGG + chr2.2:47716171-47716190 MS.gene026099:CDS 45.0%
GGCAATAGATGACATGTTGG+TGG + chr2.2:47716708-47716727 MS.gene026099:CDS 45.0%
GGCATCTCTTTCTCTTGCTA+AGG + chr2.2:47717359-47717378 MS.gene026099:CDS 45.0%
TATTGGAGCAAGCTGAGAGA+AGG + chr2.2:47717319-47717338 MS.gene026099:CDS 45.0%
TCAAGTCCATAGTTGTCCTC+TGG - chr2.2:47717679-47717698 None:intergenic 45.0%
TCATCCTCATCCACGTCAAT+AGG + chr2.2:47718242-47718261 MS.gene026099:CDS 45.0%
TCATCTTGAGCAGTGGAGTT+GGG + chr2.2:47718020-47718039 MS.gene026099:intron 45.0%
TCTCTTTCTCTTGCTAAGGC+AGG + chr2.2:47717363-47717382 MS.gene026099:CDS 45.0%
TCTTTCTCTTGCTAAGGCAG+GGG + chr2.2:47717365-47717384 MS.gene026099:CDS 45.0%
TGGTTACCAGAGGACAACTA+TGG + chr2.2:47717670-47717689 MS.gene026099:CDS 45.0%
TTCAACACTTCTGAGCAACG+AGG - chr2.2:47718059-47718078 None:intergenic 45.0%
! GGAGCATCTAATTCGGATGA+AGG + chr2.2:47717724-47717743 MS.gene026099:CDS 45.0%
AAAATGGTGAGACCCCTTGC+AGG - chr2.2:47716511-47716530 None:intergenic 50.0%
AAGGGAGCCTTTACATGGTG+AGG + chr2.2:47717338-47717357 MS.gene026099:CDS 50.0%
CATCTTGAGCAGTGGAGTTG+GGG + chr2.2:47718021-47718040 MS.gene026099:intron 50.0%
CCGTGCACTAAAACTAGGCA+GGG + chr2.2:47716484-47716503 MS.gene026099:intron 50.0%
CGAATTTGGGTGGTTACCAG+AGG + chr2.2:47717660-47717679 MS.gene026099:CDS 50.0%
CGCTTCACTTGTCGATCTTC+GGG - chr2.2:47718137-47718156 None:intergenic 50.0%
CTATCGCAGCTTGCATGCAT+GGG + chr2.2:47718101-47718120 MS.gene026099:CDS 50.0%
GAGAGAAGGGAGCCTTTACA+TGG + chr2.2:47717333-47717352 MS.gene026099:CDS 50.0%
GCGCTTCACTTGTCGATCTT+CGG - chr2.2:47718138-47718157 None:intergenic 50.0%
GGTCTTCCATGAGGACAAAG+AGG + chr2.2:47718193-47718212 MS.gene026099:CDS 50.0%
GTCATCTTGAGCAGTGGAGT+TGG + chr2.2:47718019-47718038 MS.gene026099:intron 50.0%
GTCGAGAAGTTTCTGTGCAC+CGG + chr2.2:47716083-47716102 MS.gene026099:CDS 50.0%
TCCTCGCAGACAAAATGCAC+CGG - chr2.2:47716105-47716124 None:intergenic 50.0%
TGCAAGCTGCGATAGGTCAT+CGG - chr2.2:47718096-47718115 None:intergenic 50.0%
TTGTCTGAGAGACGGTTCAG+TGG - chr2.2:47715995-47716014 None:intergenic 50.0%
!!! CCCTGCCTAGTTTTAGTGCA+CGG - chr2.2:47716487-47716506 None:intergenic 50.0%
!!! CCTGCCTAGTTTTAGTGCAC+GGG - chr2.2:47716486-47716505 None:intergenic 50.0%
!!! CTGCCTAGTTTTAGTGCACG+GGG - chr2.2:47716485-47716504 None:intergenic 50.0%
AAACTAGGCAGGGTCCTGCA+AGG + chr2.2:47716494-47716513 MS.gene026099:intron 55.0%
AACTAGGCAGGGTCCTGCAA+GGG + chr2.2:47716495-47716514 MS.gene026099:intron 55.0%
AGTGAAGCGCAGACGATACG+CGG + chr2.2:47718148-47718167 MS.gene026099:CDS 55.0%
CAGCCCCGTGCACTAAAACT+AGG + chr2.2:47716479-47716498 MS.gene026099:intron 55.0%
CCATGCATGCAAGCTGCGAT+AGG - chr2.2:47718103-47718122 None:intergenic 55.0%
CCCGTGCACTAAAACTAGGC+AGG + chr2.2:47716483-47716502 MS.gene026099:intron 55.0%
CCTATCGCAGCTTGCATGCA+TGG + chr2.2:47718100-47718119 MS.gene026099:CDS 55.0%
GAGCAGTGGAGTTGGGGAAA+CGG + chr2.2:47718027-47718046 MS.gene026099:intron 55.0%
! ACCGGTGCATTTTGTCTGCG+AGG + chr2.2:47716101-47716120 MS.gene026099:CDS 55.0%
ACTAGGCAGGGTCCTGCAAG+GGG + chr2.2:47716496-47716515 MS.gene026099:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 47715860 47718307 47715860 ID=MS.gene026099
chr2.2 mRNA 47715860 47718307 47715860 ID=MS.gene026099.t1;Parent=MS.gene026099
chr2.2 exon 47715860 47716405 47715860 ID=MS.gene026099.t1.exon1;Parent=MS.gene026099.t1
chr2.2 CDS 47715860 47716405 47715860 ID=cds.MS.gene026099.t1;Parent=MS.gene026099.t1
chr2.2 exon 47716679 47717426 47716679 ID=MS.gene026099.t1.exon2;Parent=MS.gene026099.t1
chr2.2 CDS 47716679 47717426 47716679 ID=cds.MS.gene026099.t1;Parent=MS.gene026099.t1
chr2.2 exon 47717576 47717761 47717576 ID=MS.gene026099.t1.exon3;Parent=MS.gene026099.t1
chr2.2 CDS 47717576 47717761 47717576 ID=cds.MS.gene026099.t1;Parent=MS.gene026099.t1
chr2.2 exon 47718033 47718307 47718033 ID=MS.gene026099.t1.exon4;Parent=MS.gene026099.t1
chr2.2 CDS 47718033 47718307 47718033 ID=cds.MS.gene026099.t1;Parent=MS.gene026099.t1
Gene Sequence

>MS.gene026099

ATGATGTACTTGAGAAGTGGATTCTCTGAATATTCAAACGAAATCAGCAACAACACTGGCAGTGAGTTATGCTGCACAACAGCACCGAATTCAATTACTACTACTTCACAAGATATCATCACAATCACACAACCACTGAACCGTCTCTCAGACAATCTTGCTTCAATACTAGATGATACAGGGTTTGACTTCTTTTCCGATGCAAAGATCATTGTCAAAGATGGTCGAGAAGTTTCTGTGCACCGGTGCATTTTGTCTGCGAGGAGTAGTTTCTTTAAGGATGTTTTTAAGGGAAAGAAAGAAACGATGCTGCAACTGAAGGAAGTGACTAAGGATTATGATGTTGGGTTTGACGCGCTTAACGTTGTTCTGCGTTATTTGTATAGCGGCAGAGTTGATCATCATCATTTGTCTGCTAAAGATGTTTGTGTTTGTGTGGATGATGATTGTTTACACTTTGGTTGTTGGCCCGTTGTTGATTTCATGCTTCAACTTCTCTATGCTTCATTCACCTTTCAAATTTCAGAATTGCTTGCTCTTTATCAGGTAAGAATTAAGCACTTATAGATGCTATTTTAATAATAAAAGATGAAAGAAAGTTATAGTAATTTCATAGGGGCAGCCCCGTGCACTAAAACTAGGCAGGGTCCTGCAAGGGGTCTCACCATTTTGCTTTATTGTACGCGGTCTTACCCTGTTTTTTACACAAGAGGCTGTATCCGAGACTTGAACCTATGATCTTTTAGTTAAATTAATTTCATATAGTTTATTAAAATAATCTTAAAACAATTTCTTGATAGTTGATTTGATTACTTGCAGGATCATCTACTAAACATTCTTGATAAAATGGCAATAGATGACATGTTGGTGGTTCTTTCTATAGCAAACGTTTGTGGTAAAACATGTGATAAACTACTAACAAGGTGTACAGAGATAATAGTTGAATCTAATGTTGATATAACCACTCTTGAAAAATCACTGCCTCAACCTATAGTGAAACAAGTAATATACAAACGCAAACAATTAGGCTTAGACATGTATGAAACCGTAAATCTTCTAGACAAACATGTCACCAGAATACATAGAGCTTTAGATTCAGATGATGTAGAGTTAGCAAGGTTGCTTTTGAAAGAAGGACACACTACTCTAGATGAGGCTCATGCACTTCACTATGCTGTTGCTTATTGTGATGTCAAAACCACTACTGAGCTTCTTGATCTTGGACTTGCCGATGTAAATCATAAAAATCTTAGGGGCTATAGCGTGCTACATGTTGCTGCGAAGAGAAAAGAGCCGAAAATTATTGTATCTTTGTTAACGAAGGGAGCTCAACCTTCTGAACTCACTTTCGATGGCAGAAAAGCTCTTCAAATTTCAAAGCGTAGTACGAAAGCTGTGGATTATTATAAATCTACTGAGGAAGGAAAGGTTTCTTCGAATGATCGATTGTGTATCGAGATATTGGAGCAAGCTGAGAGAAGGGAGCCTTTACATGGTGAGGCATCTCTTTCTCTTGCTAAGGCAGGGGATGATTTACGTATGAAATTGTTGTACCTAGAAAACCGAGGTATTTTCTTACATGTTCATATTTTTCGATTTATTTTTTTTTTTCTTTTTTTTCGATAAATGTGGAATCAAATTTTGTGTCGCCTTGACATATGTTACTCCCGAATTTCACAATAAATGTTGATCAACTGACGATTCATTGTTTTTCAGTTGGACTAGCAAAACTTTTGTTTCCGATGGAAGCAAAGGTTGTGATGGATATCAATCCAATTGATGGCACATCTGAATTTACTCCGAATTTGGGTGGTTACCAGAGGACAACTATGGACTTGAATGAGGCACCATTTAAAATAAAAGAGGAGCATCTAATTCGGATGAAGGCATTATCTAGAGCAGGTAATATATACATGTTTCCCATCTTTCGTTTTATTTTTGAGTACTTTCTTAAAAGTCGAAGGCTCAAAGTAATTCTTATCAACCATTGTATTTAAATCTAAAATGTTTCCATTCTATTTTTCTTTCTTTACTTGTATCTATCTGGTTCGGTTCGAAAACAATTGATATAGGGACCAGTTTTCATTATACGTTAGATATCGGTTACCATTTATTTGTTAAATTTTGCTAATTGATGCTTATATTTTATTTTGATTTTTGTCATCTTGAGCAGTGGAGTTGGGGAAACGGTTCTTTCCTCGTTGCTCAGAAGTGTTGAACAAGATCATGGATGCCGATGACCTATCGCAGCTTGCATGCATGGGTCATGACAGTCCCGAAGATCGACAAGTGAAGCGCAGACGATACGCGGAGCTACAAGAAGTTCTTAATAAGGTCTTCCATGAGGACAAAGAGGAGTTTGATAAATCTGGCATGTCTTCATCATCCTCATCCACGTCAATAGGAAAGTCAAGGGCTAATAATAGTATGATAGCAATGAATCATTGA
Protein sequence

>MS.gene026099.t1

MMYLRSGFSEYSNEISNNTGSELCCTTAPNSITTTSQDIITITQPLNRLSDNLASILDDTGFDFFSDAKIIVKDGREVSVHRCILSARSSFFKDVFKGKKETMLQLKEVTKDYDVGFDALNVVLRYLYSGRVDHHHLSAKDVCVCVDDDCLHFGCWPVVDFMLQLLYASFTFQISELLALYQDHLLNILDKMAIDDMLVVLSIANVCGKTCDKLLTRCTEIIVESNVDITTLEKSLPQPIVKQVIYKRKQLGLDMYETVNLLDKHVTRIHRALDSDDVELARLLLKEGHTTLDEAHALHYAVAYCDVKTTTELLDLGLADVNHKNLRGYSVLHVAAKRKEPKIIVSLLTKGAQPSELTFDGRKALQISKRSTKAVDYYKSTEEGKVSSNDRLCIEILEQAERREPLHGEASLSLAKAGDDLRMKLLYLENRVGLAKLLFPMEAKVVMDINPIDGTSEFTPNLGGYQRTTMDLNEAPFKIKEEHLIRMKALSRAVELGKRFFPRCSEVLNKIMDADDLSQLACMGHDSPEDRQVKRRRYAELQEVLNKVFHEDKEEFDKSGMSSSSSSTSIGKSRANNSMIAMNH