AlfalfaGEDB | MS.gene026125

M. sativa cultivar XinJiangDaYe / MS.gene026125

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01476.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026125.t1	XP_003613904.2	91.7	531	44	0	23	553	102	632	4.30E-267	930.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026125.t1	Q0GXS4	34.6	552	289	11	2	539	77	570	1.4e-77	292.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026125.t1	G7JWJ0	91.7	531	44	0	23	553	102	632	3.1e-267	930.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026125.t1	MTR_5g042440	96.203	553	21	0	1	553	80	632	0.0	1100
MS.gene026125.t1	MTR_5g019040	35.870	552	282	12	2	539	77	570	4.37e-103	323
MS.gene026125.t1	MTR_8g078300	36.464	543	279	14	2	531	69	558	1.13e-87	282
MS.gene026125.t1	MTR_1g021845	33.832	535	308	17	21	534	105	614	7.17e-84	273
MS.gene026125.t1	MTR_5g085790	30.450	578	355	16	1	544	81	645	5.83e-80	264
MS.gene026125.t1	MTR_5g019050	32.717	541	320	12	18	532	105	627	3.92e-75	251
MS.gene026125.t1	MTR_7g079350	31.383	564	323	20	2	530	98	632	1.26e-73	249
MS.gene026125.t1	MTR_3g080170	30.000	570	346	19	1	536	84	634	9.33e-69	234
MS.gene026125.t1	MTR_5g086540	32.522	575	271	21	1	530	54	556	3.02e-68	231
MS.gene026125.t1	MTR_5g086130	29.893	562	329	16	13	543	76	603	3.05e-66	226

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026125.t1	AT2G23770	34.307	548	302	16	7	532	88	599	1.09e-76	254
MS.gene026125.t1	AT3G21630	34.522	533	301	19	21	531	85	591	4.99e-74	247
MS.gene026125.t1	AT2G33580	36.422	313	183	6	251	550	353	662	3.10e-60	211
MS.gene026125.t1	AT5G38560	31.884	414	225	14	164	536	223	620	1.88e-55	198
MS.gene026125.t1	AT5G48740	35.829	374	176	16	189	536	545	880	1.59e-54	198
MS.gene026125.t1	AT1G10620	32.697	419	203	15	172	530	244	643	2.68e-54	196
MS.gene026125.t1	AT1G51940	38.889	306	159	8	252	532	323	625	5.73e-54	194
MS.gene026125.t1	AT2G25220	35.602	382	217	11	168	530	45	416	8.84e-54	188
MS.gene026125.t1	AT1G68690	30.896	424	233	14	147	530	246	649	1.13e-53	194
MS.gene026125.t1	AT1G68690	30.896	424	233	14	147	530	246	649	1.13e-53	194

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 106 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGTAATTTATTAAC+AGG	0.280922	1.2:+25062198	None:intergenic
AAAAGTTGAATTGGGTAACA+AGG	0.635260	1.2:-25059771	MS.gene026125:CDS
AAAATGAACAAGAAAAGGCT+AGG	0.578602	1.2:-25059399	MS.gene026125:CDS
AAAATGGATCTCTCTACTCA+TGG	0.560166	1.2:-25059813	MS.gene026125:CDS
AAAGGGTTGGCTATTGGATT+AGG	0.309714	1.2:-25062087	MS.gene026125:CDS
AAAGGTATCGTTTGGTTTGA+TGG	0.300230	1.2:+25062506	None:intergenic
AACAAGTTAAGGGAATGAGA+AGG	0.627554	1.2:+25062586	None:intergenic
AACTTCATCAACACCACTTT+TGG	0.299762	1.2:-25062558	MS.gene026125:CDS
AAGGAAGTTATTGATGAGGA+GGG	0.589104	1.2:-25059463	MS.gene026125:CDS
AAGGATAAGTAGTAAGGTTT+TGG	0.251840	1.2:+25062460	None:intergenic

Showing 1 to 10 of 106 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATCAGCAGTGGTTAA+TGG	-	chr1.2:25060941-25060960	MS.gene026125:intron	30.0%
AAAAGTTGAATTGGGTAACA+AGG	-	chr1.2:25062057-25062076	MS.gene026125:CDS	30.0%
AAAATGAACAAGAAAAGGCT+AGG	-	chr1.2:25062429-25062448	MS.gene026125:CDS	30.0%
AAACGGAAACACTAAGTTAT+TGG	+	chr1.2:25061022-25061041	None:intergenic	30.0%
AAGTTGCATGAACAAGTTAA+GGG	+	chr1.2:25059255-25059274	None:intergenic	30.0%
ACGAATAAAAAAATCAGCAG+TGG	-	chr1.2:25060934-25060953	MS.gene026125:intron	30.0%
AGATTAGTAGCAACAAGATT+AGG	+	chr1.2:25059411-25059430	None:intergenic	30.0%
ATAAGAGTGGAACTGTTAAA+GGG	-	chr1.2:25059724-25059743	MS.gene026125:CDS	30.0%
ATACAGAAACATACATGGAA+TGG	-	chr1.2:25060255-25060274	MS.gene026125:intron	30.0%
ATCCAACATTGAATGAGATA+AGG	+	chr1.2:25060558-25060577	None:intergenic	30.0%

Showing 1 to 10 of 209 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	25059183	25062667	25059183	ID=MS.gene026125
chr1.2	mRNA	25059183	25062667	25059183	ID=MS.gene026125.t1;Parent=MS.gene026125
chr1.2	exon	25061744	25062667	25061744	ID=MS.gene026125.t1.exon1;Parent=MS.gene026125.t1
chr1.2	CDS	25061744	25062667	25061744	ID=cds.MS.gene026125.t1;Parent=MS.gene026125.t1
chr1.2	exon	25059183	25059920	25059183	ID=MS.gene026125.t1.exon2;Parent=MS.gene026125.t1
chr1.2	CDS	25059183	25059920	25059183	ID=cds.MS.gene026125.t1;Parent=MS.gene026125.t1

Gene Sequence

>MS.gene026125

ATGATCGCAAAACCAAGCAATATCTCTTCACCTTCATCCCCTCTACTCCCTAACCAACCCCTTCTCATTCCCTTAACTTGTTCATGCAACTTCATCAACACCACTTTTGGTTCCATCTCTTACTCTAACATCACTTACACCATCAAACCAAACGATACCTTTTTCCTTGTTTCAACTATAAACTTCCAAAACCTTACTACTTATCCTTCTGTTGAAGTTGTTAATCCTAATCTTGTTGCTACTAATCTCTCTATTGGTGATAATGTTGTGTTTCCTATTTTTTGTAAGTGTCCTGATAAAACAAGAACAAATTCTAGTTTCATGATATCTTATGTTGTTCAACCTCATGATAATGTTTCTTCTATTGCTTCTATGTTTGGAACAAGTGAAAAGTCTATAACTGATGTTAATGGTGAAACTTTATATGCTTATGATACTGTTTTTGTTCCTGTTAATAAATTACCTGTTTTGAAACAACCTAGTACTATTGTTCCTTCTCCTGCTCCAAGAGGAAATTCTGATGATGGTGATGATGATGATGATAAGAGTGGAACTGTTAAAGGGTTGGCTATTGGATTAGGAATTTTAGGGTTTTTGTTGATTTTGGTTTTGGTGTTTTGGTTTTACAGAGAGGTTCTGTCTAAGAAGGAAAAGAAAGGGAAGGATTTGTATTATAGAGAGAAAGGGTATAAAGGGAATGATGAAAAGAAGAAGAAAATGGATGTGAATTTTATGGCTAATGTTTCTGATTGTTTAGATAAGTATAGAGTTTTTGGATTTGATGAATTGGTTGAAGCTACTGATGGGTTTGATGAAAGGTTTTTGATTCAAGGGTCTGTTTATAAAGGTGAAATTGATGGACAAGTTTATGCTATTAAGAAGATGAAGTGGAATGCTTATGAAGAGCTCAAAATTTTACAGAAGGTAATTTATTAACACTAGTATTTTGCATATTTTAGATGTTTATTTATTTGTTGATCATTATTTTCTAGTGTTTGCTATGTTGAAAATGGTGGTAGTGCCTTCATTATTTTCTTTAATTTTTTATGATTAAAAAATTAAAGAATGGAAGATACAGAAACATACATGGAATGGAAGATTGAATTTTGAGATACCTTATTTGTTAGAATTTAGGTTTTACCTGCAGAACTCTTGTAAAGTTTGTTTATAAGGTGAGGGTTGCCTCCACCTTTTTTATACTCAGAACTGGACATCTAAAATTTAATTTGATACCGCCAACTTAATAGTAGGTGGTCTACCAGATTTGGTATAAACATTGATATTGGTTCATAATTTAGATTCGGCTTAACTAAACCCTTTAAAACCGATTTGTAAGGTGACAACTTCTTTTACGTATAAAGATGTATTTGGACCTTATCTCATTCAATGTTGGATACTCAACAAAAAGGGAATAATGAGTGAGGAATAGATAGAAAACCTTCACTAAAATAAAATATGATGGAAGTTAATATCTTAATGTTGATGAGTAATCAGATGATTATAGGTGATGTGACTTGTCTAATGAGATGATACCATTCGACCAATGTTTTACATGTCAATGAAAGAATTAGAAATAAAATTTATGTAACACTATCAAAACAAGGGAATAAACCTCTAGATTCCTAGAAGATACACTATTTTTCTAACATTGGTCATTTTCAAGGATATAAGGAACTATCCTCAAACTATTTACTTTCTTAATCATTTATTTGTATTTATTTTTGTACTTGATGTTTTAGAAACGCATCAAGACGAATAAAAAAATCAGCAGTGGTTAATGGTTTTGTTGCTTGTGGTTTTTTTAATTTAAAGAAGTAGGTGGATTTATAATGATTTCCAATAACTTAGTGTTTCCGTTTGAAGACAAAAGAAAGTTACATAAACAATAATTCAAAGCTTATAATGATCATACAAAGAAGAAGATAAATTAAAATAAGTAAAAAAATAAATAAATATATGGTGCTCTATCTTTTTTTGTCCCCTATCTATCTTTAGAGTGGTTTATTTTGAGGTTGCGCCCTTGCCACTAAAAGATCACTCTTGTTTTTAGATTTTCTAGTCAAACCGCACGCATTGTTTGAAAGCATGTATTTAGAAAGTTTAGACTAATTTTAGAGGTGTGAAAAGTGGCGTTTTAGTATTGACTTATTTTTTCATTATTTCTTTTTTAAATTATGGTAGAGTAATGATATTTGTACAACTATTTGATGATAACTTTTGTGACAATCCTTTTTTCTCTATTCTTATTGATCAAAACAATAAAAAAAAAGGACAGAAAAAAAAAAAACATGATATGAGTATAAAAGAAGGTTGTCTAAATGTTGTCACAAAAGTTATTTAAAAGTTGTCCAACAAAAAAAATTGACAAATAAGTTGTCCACAACATATTTATTATATATTATTTTTTTAAGGAATATTTATTATATATTATGTAAATATGATTTTACTTTTTTTTATTTTGATTTTTTCTCTCTCCTCGAGTCAAATCAATAGTTATAAATATAATAATGTATTTTTGTATAGTGTCAAAAAAGTTGTCAATCTTTTGTTGTTCAAATAACAATTTTCATGCGTAAAAAAAAAAAAACATTTCTCGTATAAAAAACAACAACACTATTTCACCTTAATTTGACAAAAGACAAATGCAAAACCATAATAATGACTAGAAAGGAATTCGACAAAAAAGAAAGTACTTAGATATTTTTCAGGTACATTTGAATAACAATGTGCCATTTTATGTATTGAAGGTAAACCATGGGAATTTGGTGAAGTTGGAAGGATTTTGCATAGAACCAGAAGAATCAAATTGTTATCTAGTCTATGAATATGTTGAAAATGGATCTCTCTACTCATGGCTACATGAAGACAAAAACGAAAAGTTGAATTGGGTAACAAGGCTAAGAATAGCCGTTGACATTGCCAATGGTTTATTGTACATTCATGAACACACAAGACCAAAGGTTGTACACAAAGACATTAAAAGTAGCAACATTCTCTTGGACTCAAACATGAGAGCTAAAATTGCGAATTTTGGTCTTGCAAAGAGCGGAATTAATGCGATTACAATGCACATTGTAGGAACACAAGGGTACATTTCGCCCGAATATCTAGCCGATGGTATTGTGTCAACGAAGATGGATGTGTTTTCTTTTGGTGTTGTGTTGCTTGAATTGATCTCTGGGAAGGAAGTTATTGATGAGGAGGGAAATGTTTTGTGGGCTAGTGCAATAAAAACATTTGAAGTGAAAAATGAACAAGAAAAGGCTAGGAGACTTAAGGAATGGTTGGATAAGGCTATGTTAAAGGAGACATGTTCAATGGAAAGTTTGATGGGTGTACTTCATGTGGCAATTGCTTGTTTGAATAGAGATCCATCAAAGAGACCTAGCATTATAGATATTGTTTATTCACTTAGTAAATGTGAAGAAGCAGGATTTGAGAGCTCAGATGATGGGTTTGGTTCAGAAAGGTTGGTGGCTAGGTGA

Protein sequence

>MS.gene026125.t1

MIAKPSNISSPSSPLLPNQPLLIPLTCSCNFINTTFGSISYSNITYTIKPNDTFFLVSTINFQNLTTYPSVEVVNPNLVATNLSIGDNVVFPIFCKCPDKTRTNSSFMISYVVQPHDNVSSIASMFGTSEKSITDVNGETLYAYDTVFVPVNKLPVLKQPSTIVPSPAPRGNSDDGDDDDDKSGTVKGLAIGLGILGFLLILVLVFWFYREVLSKKEKKGKDLYYREKGYKGNDEKKKKMDVNFMANVSDCLDKYRVFGFDELVEATDGFDERFLIQGSVYKGEIDGQVYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIEPEESNCYLVYEYVENGSLYSWLHEDKNEKLNWVTRLRIAVDIANGLLYIHEHTRPKVVHKDIKSSNILLDSNMRAKIANFGLAKSGINAITMHIVGTQGYISPEYLADGIVSTKMDVFSFGVVLLELISGKEVIDEEGNVLWASAIKTFEVKNEQEKARRLKEWLDKAMLKETCSMESLMGVLHVAIACLNRDPSKRPSIIDIVYSLSKCEEAGFESSDDGFGSERLVAR