AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026194

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026194.t1 MTR_1g038370 88.793 580 45 1 1 580 1 560 0.0 1070
MS.gene026194.t1 MTR_1g038400 77.273 572 102 3 2 571 22 567 0.0 890
MS.gene026194.t1 MTR_5g029370 52.209 498 231 3 2 493 83 579 0.0 541
MS.gene026194.t1 MTR_5g029370 52.209 498 231 3 2 493 83 579 0.0 541
MS.gene026194.t1 MTR_7g407000 80.556 144 10 2 181 323 28 154 5.37e-75 235
MS.gene026194.t1 MTR_3g075210 37.326 359 189 8 9 346 19 362 2.84e-66 235
MS.gene026194.t1 MTR_8g089260 31.397 551 289 15 4 476 29 568 7.15e-59 212
MS.gene026194.t1 MTR_2g047130 29.503 583 315 18 4 502 48 618 3.96e-54 198
MS.gene026194.t1 MTR_2g047130 29.503 583 315 18 4 502 45 615 4.23e-54 198
MS.gene026194.t1 MTR_1g078070 30.550 527 276 14 6 454 148 662 7.96e-54 197
MS.gene026194.t1 MTR_1g078070 30.550 527 276 14 6 454 148 662 1.35e-53 197
MS.gene026194.t1 MTR_5g010300 41.281 281 133 8 107 365 321 591 3.86e-53 196
MS.gene026194.t1 MTR_5g010300 41.281 281 133 8 107 365 321 591 4.01e-53 196
MS.gene026194.t1 MTR_5g010300 41.281 281 133 8 107 365 321 591 4.08e-53 196
MS.gene026194.t1 MTR_5g010300 41.281 281 133 8 107 365 321 591 4.31e-53 196
MS.gene026194.t1 MTR_1g094740 44.149 188 101 1 152 339 291 474 1.93e-52 194
MS.gene026194.t1 MTR_7g097070 31.447 318 188 11 156 455 338 643 2.39e-30 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026194.t1 AT5G46910 54.412 476 212 5 7 479 102 575 0.0 536
MS.gene026194.t1 AT5G46910 53.684 475 217 3 7 479 102 575 0.0 535
MS.gene026194.t1 AT2G34880 31.041 538 279 15 7 470 60 579 1.34e-58 209
MS.gene026194.t1 AT3G48430 33.424 368 203 6 9 339 21 383 5.13e-58 211
MS.gene026194.t1 AT1G63490 43.019 265 125 6 93 340 52 307 1.42e-57 209
MS.gene026194.t1 AT1G63490 43.182 264 124 6 94 340 306 560 1.74e-57 209
MS.gene026194.t1 AT1G63490 43.182 264 124 6 94 340 306 560 1.86e-57 209
MS.gene026194.t1 AT1G30810 30.241 539 287 13 4 466 55 580 8.53e-57 204
MS.gene026194.t1 AT1G30810 30.241 539 287 13 4 466 55 580 8.53e-57 204
MS.gene026194.t1 AT1G30810 30.241 539 287 13 4 466 55 580 8.53e-57 204
MS.gene026194.t1 AT4G20400 27.243 602 344 15 4 528 52 636 1.25e-56 205
MS.gene026194.t1 AT1G08620 31.478 521 256 16 6 439 144 650 4.53e-54 199
MS.gene026194.t1 AT1G08620 31.478 521 256 16 6 439 144 650 4.53e-54 199
MS.gene026194.t1 AT1G08620 31.478 521 256 16 6 439 144 650 4.53e-54 199
MS.gene026194.t1 AT1G08620 31.478 521 256 16 6 439 158 664 4.58e-54 199
MS.gene026194.t1 AT4G20400 27.458 590 334 15 16 528 7 579 1.01e-53 197
MS.gene026194.t1 AT5G04240 45.745 188 98 1 152 339 259 442 7.27e-52 192
MS.gene026194.t1 AT2G38950 25.357 631 364 20 2 550 102 707 1.28e-34 139
MS.gene026194.t1 AT1G63490 55.172 87 39 0 254 340 15 101 1.22e-24 109

Find 76 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACAATTGTACAGCCTCTT+AGG 0.195974 1.2:+23610679 MS.gene026194:CDS
TGACATGCAGCCTCTGCTTT+AGG 0.237204 1.2:+23612619 MS.gene026194:CDS
TTCTTTACCGTAAAATCTAT+TGG 0.244390 1.2:-23610890 None:intergenic
GCTCCTGAGGCTTCTAAATA+TGG 0.264118 1.2:+23610192 MS.gene026194:CDS
GATGTATTCATTTATGTTAT+AGG 0.277368 1.2:-23612943 None:intergenic
TCCTGCAGTATCTTCCCTTT+TGG 0.292966 1.2:+23613378 MS.gene026194:CDS
GACATGCAGCCTCTGCTTTA+GGG 0.297262 1.2:+23612620 MS.gene026194:CDS
AATCCAGCATGATATGAATT+AGG 0.298533 1.2:-23611779 None:intergenic
TGTCTTAACGGAGGAGAAAA+AGG 0.302309 1.2:+23610644 MS.gene026194:CDS
GCTCGATCCGACGTGTCTTC+AGG 0.311406 1.2:-23612489 None:intergenic
AGTTCCTCATATGGAATTAT+AGG 0.316333 1.2:-23612405 None:intergenic
GAGAAAGGAACAGTTGAGTA+TGG 0.324983 1.2:+23610967 MS.gene026194:CDS
AGCTATTCAAATACATCATT+AGG 0.343820 1.2:+23612591 MS.gene026194:CDS
ATAAAGGACTCGTTGTCTTT+TGG 0.343992 1.2:-23613317 None:intergenic
TTACAAAGAAGTTCCTCATA+TGG 0.344918 1.2:-23612414 None:intergenic
TTACCATGGAAAAGGCAAAT+TGG 0.359872 1.2:-23612687 None:intergenic
AACAAGCAATTTCAATTTGA+AGG 0.380018 1.2:+23611041 MS.gene026194:CDS
TAAACTTTGCTATTGATGAT+TGG 0.380245 1.2:+23612331 MS.gene026194:CDS
GACAAAAGAAGCAGGATTAG+AGG 0.392437 1.2:-23610625 None:intergenic
ACTGAAAGCAGAATAATAAC+TGG 0.419321 1.2:+23613137 MS.gene026194:intron
TTTGATTTGAAAACCCTAAG+AGG 0.423006 1.2:-23610693 None:intergenic
CTGATCCTATGCTTTACATT+GGG 0.424948 1.2:+23611372 MS.gene026194:CDS
TGTTCTGATGGATAATAAGT+TGG 0.426588 1.2:-23610132 None:intergenic
CACAATTGTACAGCCTCTTA+GGG 0.435355 1.2:+23610680 MS.gene026194:CDS
CTTGTTCCAAGCTTATCATC+AGG 0.440827 1.2:-23611024 None:intergenic
GCTACCTATAATTCCATATG+AGG 0.458631 1.2:+23612401 MS.gene026194:CDS
TTGATGATTGGTTTCCACTC+GGG 0.459678 1.2:+23612343 MS.gene026194:CDS
TTTCTGTCAAGTAAACGTAA+TGG 0.468536 1.2:-23611250 None:intergenic
TGCTCAAACTCTTGTTCTGA+TGG 0.476367 1.2:-23610144 None:intergenic
TTACCATATTTAGAAGCCTC+AGG 0.481047 1.2:-23610195 None:intergenic
TTTCCTAATTCATATCATGC+TGG 0.481919 1.2:+23611776 MS.gene026194:CDS
ATGAGGTCTTACCATGGAAA+AGG 0.484485 1.2:-23612695 None:intergenic
ACATAATGTGCCGGTTTACA+AGG 0.487938 1.2:+23611721 MS.gene026194:CDS
TTGAAGATCACTATTTGTAC+AGG 0.488775 1.2:+23611423 MS.gene026194:CDS
GTGCCACAAAATTGTTTATG+TGG 0.488853 1.2:+23612807 MS.gene026194:CDS
ATTTGAAGCTCTTGCAAACA+AGG 0.496702 1.2:+23610861 MS.gene026194:CDS
GACAACATACTGTATTTAAG+AGG 0.498182 1.2:+23612832 MS.gene026194:CDS
ATCATCAGGATCACTTGAAA+AGG 0.501772 1.2:-23611010 None:intergenic
GAAATAATACATGGAGAGAA+AGG 0.501914 1.2:+23610952 MS.gene026194:CDS
AATTGAGAGGCTGCAGAGCT+AGG 0.502653 1.2:-23611578 None:intergenic
TACAACTCCTCAAAAGATAG+AGG 0.507371 1.2:+23612453 MS.gene026194:CDS
ACTGATCCTATGCTTTACAT+TGG 0.515442 1.2:+23611371 MS.gene026194:CDS
AGTGATCCTGATGATAAGCT+TGG 0.516084 1.2:+23611018 MS.gene026194:CDS
TGCTATTCAGTATGTTTGCA+TGG 0.518171 1.2:+23611396 MS.gene026194:CDS
TGATGATTGGTTTCCACTCG+GGG 0.519820 1.2:+23612344 MS.gene026194:CDS
TTACAAGGCGATGCAAAAGC+CGG 0.522105 1.2:+23611736 MS.gene026194:CDS
ATTGATGATTGGTTTCCACT+CGG 0.533262 1.2:+23612342 MS.gene026194:CDS
ACTCAGGTGGAAATGAAACT+TGG 0.534895 1.2:+23611546 MS.gene026194:CDS
TTAGCAGAACATGGAGAGAA+TGG 0.538483 1.2:+23611641 MS.gene026194:CDS
TTATGTTCTAACAAGACATC+AGG 0.538881 1.2:-23611704 None:intergenic
AGAAGAACTGTTAACTCGCT+AGG 0.543521 1.2:+23613178 MS.gene026194:CDS
TATGCAGAAAATTGCTCCTG+AGG 0.544690 1.2:+23610179 MS.gene026194:CDS
CTTGTTAGAACATAATGTGC+CGG 0.547471 1.2:+23611712 MS.gene026194:CDS
TCCGTTAAGACAAAAGAAGC+AGG 0.558324 1.2:-23610633 None:intergenic
GCAGGATTAGAGGCAGCGAT+TGG 0.560174 1.2:-23610615 None:intergenic
TTTATAAGACATCATTATCA+CGG 0.560917 1.2:+23612544 MS.gene026194:CDS
CAAGACATCAGGAGAGAACA+TGG 0.563327 1.2:-23611693 None:intergenic
TACAAGGCGATGCAAAAGCC+GGG 0.563332 1.2:+23611737 MS.gene026194:CDS
ATAAATTATCATCACTCAGG+TGG 0.565750 1.2:+23611533 MS.gene026194:CDS
AAAGTGATGACAAACTCTCC+CGG 0.576056 1.2:-23611755 None:intergenic
AATGGAGACTGTGGCAGCCG+CGG 0.576119 1.2:-23611232 None:intergenic
TGCCACAAAATTGTTTATGT+GGG 0.576308 1.2:+23612808 MS.gene026194:CDS
TTCTGGCACGAAATAATACA+TGG 0.588933 1.2:+23610943 MS.gene026194:CDS
GGTGGAAATGAAACTTGGTA+TGG 0.589065 1.2:+23611551 MS.gene026194:CDS
GCCAAAAGGGAAGATACTGC+AGG 0.591239 1.2:-23613379 None:intergenic
AACAAAATCTTAGCAGAACA+TGG 0.596081 1.2:+23611632 MS.gene026194:CDS
AGTATAAATTATCATCACTC+AGG 0.598943 1.2:+23611530 MS.gene026194:intron
AGCATCCCAATGTAAAGCAT+AGG 0.618659 1.2:-23611377 None:intergenic
TCGCTAGCTGCAGCCCCGAG+TGG 0.621053 1.2:-23612357 None:intergenic
TATCATGCTGGATTTAGTCA+CGG 0.625895 1.2:+23611788 MS.gene026194:CDS
GCAGAATAATAACTGGCATG+AGG 0.639560 1.2:+23613144 MS.gene026194:intron
CATAACAATCCCTAAAGCAG+AGG 0.654524 1.2:-23612629 None:intergenic
TGAATACATCAAAGAACACA+AGG 0.678690 1.2:+23612956 MS.gene026194:CDS
AGTAAACGTAATGGAGACTG+TGG 0.682153 1.2:-23611241 None:intergenic
TGAGTATGGAGTCAATGTTG+AGG 0.703101 1.2:+23610981 MS.gene026194:CDS
AATCAAACCTGAAGACACGT+CGG 0.715406 1.2:+23612482 MS.gene026194:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATACTGCAAAAAATA+CGG - chr1.2:23611520-23611539 None:intergenic 15.0%
!!! TTTTAGTAAAACCTATATTT+TGG - chr1.2:23610435-23610454 None:intergenic 15.0%
!! AATAGTCAAATAGAATAATG+AGG - chr1.2:23612715-23612734 None:intergenic 20.0%
!! AGTCTATTAATCTTTACTTA+TGG + chr1.2:23611146-23611165 MS.gene026194:intron 20.0%
!! ATATTTGATCTTAATCTTTC+AGG + chr1.2:23610573-23610592 MS.gene026194:intron 20.0%
!! GATGTATTCATTTATGTTAT+AGG - chr1.2:23612946-23612965 None:intergenic 20.0%
!! TGATGAAAAATTAACTAACT+TGG + chr1.2:23610798-23610817 MS.gene026194:intron 20.0%
!! TTTATAAGACATCATTATCA+CGG + chr1.2:23612544-23612563 MS.gene026194:CDS 20.0%
!!! AACAACTTTTAATTCAGATT+AGG - chr1.2:23611304-23611323 None:intergenic 20.0%
!!! ACATAAGTATTTAAAATAGC+AGG - chr1.2:23612201-23612220 None:intergenic 20.0%
!!! ACTATTTTAATGAAGTTTAG+AGG - chr1.2:23613025-23613044 None:intergenic 20.0%
!!! ATCATTTTCATGTTGATTTT+AGG + chr1.2:23612288-23612307 MS.gene026194:intron 20.0%
!!! ATTTTCTGCATATAAACTAA+AGG - chr1.2:23610171-23610190 None:intergenic 20.0%
!!! TGGATATTGCTTATATTTTA+CGG + chr1.2:23611879-23611898 MS.gene026194:intron 20.0%
! AAAGTGAAACTCCAAAATAT+AGG + chr1.2:23610421-23610440 MS.gene026194:intron 25.0%
! AACAAGCAATTTCAATTTGA+AGG + chr1.2:23611041-23611060 MS.gene026194:CDS 25.0%
! AATATAAGCATACAAACAGA+AGG - chr1.2:23610558-23610577 None:intergenic 25.0%
! AGAACGATGTAATCTAATAT+AGG + chr1.2:23610480-23610499 MS.gene026194:intron 25.0%
! AGCTATTCAAATACATCATT+AGG + chr1.2:23612591-23612610 MS.gene026194:CDS 25.0%
! AGTATAAATTATCATCACTC+AGG + chr1.2:23611530-23611549 MS.gene026194:intron 25.0%
! CGATATTTAATTATGGAGTT+CGG - chr1.2:23612062-23612081 None:intergenic 25.0%
! GATTACTTGTGTAAATACTA+CGG - chr1.2:23611972-23611991 None:intergenic 25.0%
! TAAAAAAAACCCTAGAAACA+CGG - chr1.2:23610253-23610272 None:intergenic 25.0%
! TTCTTTACCGTAAAATCTAT+TGG - chr1.2:23610893-23610912 None:intergenic 25.0%
!! ATGGATAAACTTGCTTATTA+TGG + chr1.2:23612769-23612788 MS.gene026194:intron 25.0%
!! CATGTTTTCTCAAGTTATAA+AGG - chr1.2:23613336-23613355 None:intergenic 25.0%
!! CTTATATTTTACGGATAAGT+AGG + chr1.2:23611888-23611907 MS.gene026194:intron 25.0%
!! GCATTTTCCAATAGATTTTA+CGG + chr1.2:23610883-23610902 MS.gene026194:CDS 25.0%
!! TACAAAAATTGATTCCTTAC+TGG - chr1.2:23611280-23611299 None:intergenic 25.0%
!!! TAAACTTTGCTATTGATGAT+TGG + chr1.2:23612331-23612350 MS.gene026194:CDS 25.0%
!!! TAACTTTTTCTAAGAGAAGA+AGG + chr1.2:23610730-23610749 MS.gene026194:CDS 25.0%
!!! TAATTTGCTTGTGTTATTGA+TGG + chr1.2:23612750-23612769 MS.gene026194:intron 25.0%
!!! TTGATTTTAGGTTTTAACTG+TGG + chr1.2:23612300-23612319 MS.gene026194:intron 25.0%
!!! TTGTTTTTTGTGCAAGAAAT+TGG - chr1.2:23611673-23611692 None:intergenic 25.0%
AACAAAATCTTAGCAGAACA+TGG + chr1.2:23611632-23611651 MS.gene026194:CDS 30.0%
AATCCAGCATGATATGAATT+AGG - chr1.2:23611782-23611801 None:intergenic 30.0%
ACTGAAAGCAGAATAATAAC+TGG + chr1.2:23613137-23613156 MS.gene026194:intron 30.0%
AGGTCGATTGAATAATAGAA+AGG + chr1.2:23611912-23611931 MS.gene026194:intron 30.0%
AGTAGCATTCTTACTATAGT+TGG - chr1.2:23610318-23610337 None:intergenic 30.0%
AGTTCCTCATATGGAATTAT+AGG - chr1.2:23612408-23612427 None:intergenic 30.0%
ATAAATTATCATCACTCAGG+TGG + chr1.2:23611533-23611552 MS.gene026194:CDS 30.0%
CTTTCTATTATGCAAGCTTA+GGG - chr1.2:23612001-23612020 None:intergenic 30.0%
GAAATAATACATGGAGAGAA+AGG + chr1.2:23610952-23610971 MS.gene026194:CDS 30.0%
GAACACGCGATATTTAATTA+TGG - chr1.2:23612069-23612088 None:intergenic 30.0%
GACAACATACTGTATTTAAG+AGG + chr1.2:23612832-23612851 MS.gene026194:CDS 30.0%
GTAGCATTCTTACTATAGTT+GGG - chr1.2:23610317-23610336 None:intergenic 30.0%
TGAATACATCAAAGAACACA+AGG + chr1.2:23612956-23612975 MS.gene026194:CDS 30.0%
TGCCACAAAATTGTTTATGT+GGG + chr1.2:23612808-23612827 MS.gene026194:CDS 30.0%
TTACAAAGAAGTTCCTCATA+TGG - chr1.2:23612417-23612436 None:intergenic 30.0%
TTATGTTCTAACAAGACATC+AGG - chr1.2:23611707-23611726 None:intergenic 30.0%
TTCTCTCTCTATAAATGTGT+TGG + chr1.2:23611839-23611858 MS.gene026194:intron 30.0%
TTGAAGATCACTATTTGTAC+AGG + chr1.2:23611423-23611442 MS.gene026194:CDS 30.0%
TTGACAGAAAAATTCCAGTA+AGG + chr1.2:23611263-23611282 MS.gene026194:intron 30.0%
TTTCCTAATTCATATCATGC+TGG + chr1.2:23611776-23611795 MS.gene026194:CDS 30.0%
TTTCTGTCAAGTAAACGTAA+TGG - chr1.2:23611253-23611272 None:intergenic 30.0%
! AGGTTTTACTAAAATCAGAG+TGG + chr1.2:23610441-23610460 MS.gene026194:intron 30.0%
! CAAAAGTTTTCAACTGGAAA+AGG + chr1.2:23612884-23612903 MS.gene026194:CDS 30.0%
! CTTTTCCAGTTGAAAACTTT+TGG - chr1.2:23612886-23612905 None:intergenic 30.0%
! GACAATCTTTTCAAATTGAG+AGG - chr1.2:23611594-23611613 None:intergenic 30.0%
! GGTTTTCAAATCAAATGAGA+TGG + chr1.2:23610701-23610720 MS.gene026194:CDS 30.0%
! TGAATAATAGAAAGGTACGT+AGG + chr1.2:23611920-23611939 MS.gene026194:intron 30.0%
! TGTTCTGATGGATAATAAGT+TGG - chr1.2:23610135-23610154 None:intergenic 30.0%
! TTTGTAACCTCTATCTTTTG+AGG - chr1.2:23612463-23612482 None:intergenic 30.0%
!! GAATGCTACTTACTTTCTTT+TGG + chr1.2:23610328-23610347 MS.gene026194:intron 30.0%
!! TAGATATCGAAAAAGTGTTC+TGG + chr1.2:23610926-23610945 MS.gene026194:CDS 30.0%
!! TGGTGTTATTATGTTTCTGA+TGG + chr1.2:23611859-23611878 MS.gene026194:intron 30.0%
!! TTTGATTTGAAAACCCTAAG+AGG - chr1.2:23610696-23610715 None:intergenic 30.0%
!!! TTTGATTTTAGAATTTGCCG+CGG + chr1.2:23611215-23611234 MS.gene026194:intron 30.0%
AACTATTAGAACTTCAGGCA+TGG - chr1.2:23612115-23612134 None:intergenic 35.0%
ACAACAGATTCTGCATTTGT+AGG + chr1.2:23610515-23610534 MS.gene026194:intron 35.0%
ACATAAGCAACCTGAAGATA+AGG - chr1.2:23613081-23613100 None:intergenic 35.0%
ACTGATCCTATGCTTTACAT+TGG + chr1.2:23611371-23611390 MS.gene026194:CDS 35.0%
AGAATAATGAGGTCTTACCA+TGG - chr1.2:23612704-23612723 None:intergenic 35.0%
ATCATCAGGATCACTTGAAA+AGG - chr1.2:23611013-23611032 None:intergenic 35.0%
CCTAAGCTTGCATAATAGAA+AGG + chr1.2:23611999-23612018 MS.gene026194:intron 35.0%
CCTTTCTATTATGCAAGCTT+AGG - chr1.2:23612002-23612021 None:intergenic 35.0%
CTGATCCTATGCTTTACATT+GGG + chr1.2:23611372-23611391 MS.gene026194:CDS 35.0%
CTTGTTAGAACATAATGTGC+CGG + chr1.2:23611712-23611731 MS.gene026194:CDS 35.0%
GCAGTAACTATTAGAACTTC+AGG - chr1.2:23612120-23612139 None:intergenic 35.0%
GCTACCTATAATTCCATATG+AGG + chr1.2:23612401-23612420 MS.gene026194:CDS 35.0%
GTGCCACAAAATTGTTTATG+TGG + chr1.2:23612807-23612826 MS.gene026194:CDS 35.0%
TACAACTCCTCAAAAGATAG+AGG + chr1.2:23612453-23612472 MS.gene026194:CDS 35.0%
TATCATGCTGGATTTAGTCA+CGG + chr1.2:23611788-23611807 MS.gene026194:CDS 35.0%
TGCTATTCAGTATGTTTGCA+TGG + chr1.2:23611396-23611415 MS.gene026194:CDS 35.0%
TTACCATATTTAGAAGCCTC+AGG - chr1.2:23610198-23610217 None:intergenic 35.0%
TTACCATGGAAAAGGCAAAT+TGG - chr1.2:23612690-23612709 None:intergenic 35.0%
TTCTGGCACGAAATAATACA+TGG + chr1.2:23610943-23610962 MS.gene026194:CDS 35.0%
! ATAAAGGACTCGTTGTCTTT+TGG - chr1.2:23613320-23613339 None:intergenic 35.0%
! ATTTGAAGCTCTTGCAAACA+AGG + chr1.2:23610861-23610880 MS.gene026194:CDS 35.0%
! CTCCCACATAAACAATTTTG+TGG - chr1.2:23612813-23612832 None:intergenic 35.0%
! TATTTTACGGATAAGTAGGC+AGG + chr1.2:23611892-23611911 MS.gene026194:intron 35.0%
! TCCTGCTTCTTTTGTCTTAA+CGG + chr1.2:23610632-23610651 MS.gene026194:CDS 35.0%
!! ATTGATGATTGGTTTCCACT+CGG + chr1.2:23612342-23612361 MS.gene026194:CDS 35.0%
!! ATTTTTCAGATGTCGCCAAA+AGG - chr1.2:23613396-23613415 None:intergenic 35.0%
!! TTTTTCAGATGTCGCCAAAA+GGG - chr1.2:23613395-23613414 None:intergenic 35.0%
AAAGTGATGACAAACTCTCC+CGG - chr1.2:23611758-23611777 None:intergenic 40.0%
AATCAAACCTGAAGACACGT+CGG + chr1.2:23612482-23612501 MS.gene026194:CDS 40.0%
ACACAATTGTACAGCCTCTT+AGG + chr1.2:23610679-23610698 MS.gene026194:CDS 40.0%
ACTCAGGTGGAAATGAAACT+TGG + chr1.2:23611546-23611565 MS.gene026194:CDS 40.0%
AGAAGAACTGTTAACTCGCT+AGG + chr1.2:23613178-23613197 MS.gene026194:CDS 40.0%
AGCATCCCAATGTAAAGCAT+AGG - chr1.2:23611380-23611399 None:intergenic 40.0%
AGTGATCCTGATGATAAGCT+TGG + chr1.2:23611018-23611037 MS.gene026194:CDS 40.0%
ATGAGGTCTTACCATGGAAA+AGG - chr1.2:23612698-23612717 None:intergenic 40.0%
CACAATTGTACAGCCTCTTA+GGG + chr1.2:23610680-23610699 MS.gene026194:CDS 40.0%
CAGGAACTGAAATTCTGCAT+GGG - chr1.2:23612182-23612201 None:intergenic 40.0%
CATAACAATCCCTAAAGCAG+AGG - chr1.2:23612632-23612651 None:intergenic 40.0%
CGCGTGCATGTTTAGATTAA+CGG + chr1.2:23610375-23610394 MS.gene026194:intron 40.0%
CTTGTTCCAAGCTTATCATC+AGG - chr1.2:23611027-23611046 None:intergenic 40.0%
GACAAAAGAAGCAGGATTAG+AGG - chr1.2:23610628-23610647 None:intergenic 40.0%
GAGAAAGGAACAGTTGAGTA+TGG + chr1.2:23610967-23610986 MS.gene026194:CDS 40.0%
GCAGAATAATAACTGGCATG+AGG + chr1.2:23613144-23613163 MS.gene026194:intron 40.0%
GGTGGAAATGAAACTTGGTA+TGG + chr1.2:23611551-23611570 MS.gene026194:CDS 40.0%
GTATGCATTGCCTTATCTTC+AGG + chr1.2:23613068-23613087 MS.gene026194:intron 40.0%
TATGCAGAAAATTGCTCCTG+AGG + chr1.2:23610179-23610198 MS.gene026194:CDS 40.0%
TCCGTTAAGACAAAAGAAGC+AGG - chr1.2:23610636-23610655 None:intergenic 40.0%
TGAGTATGGAGTCAATGTTG+AGG + chr1.2:23610981-23611000 MS.gene026194:CDS 40.0%
TGCTCAAACTCTTGTTCTGA+TGG - chr1.2:23610147-23610166 None:intergenic 40.0%
TGTCTTAACGGAGGAGAAAA+AGG + chr1.2:23610644-23610663 MS.gene026194:CDS 40.0%
TTAGCAGAACATGGAGAGAA+TGG + chr1.2:23611641-23611660 MS.gene026194:CDS 40.0%
! AGAAAGGTACGTAGGTTTCA+AGG + chr1.2:23611928-23611947 MS.gene026194:intron 40.0%
! AGTAAACGTAATGGAGACTG+TGG - chr1.2:23611244-23611263 None:intergenic 40.0%
! CTTTTGGTACTCATCACTGA+TGG - chr1.2:23613304-23613323 None:intergenic 40.0%
! GATCCAATTTGCCTTTTCCA+TGG + chr1.2:23612684-23612703 MS.gene026194:CDS 40.0%
! TGCTGCCAAAAGTTTTCAAC+TGG + chr1.2:23612878-23612897 MS.gene026194:CDS 40.0%
! TGCTTCTTTTGTCTTAACGG+AGG + chr1.2:23610635-23610654 MS.gene026194:CDS 40.0%
! TTTCCATCACCGTGTTTCTA+GGG + chr1.2:23610241-23610260 MS.gene026194:intron 40.0%
! TTTTCCATCACCGTGTTTCT+AGG + chr1.2:23610240-23610259 MS.gene026194:intron 40.0%
! TTTTGCATCGCCTTGTAAAC+CGG - chr1.2:23611734-23611753 None:intergenic 40.0%
!! ACATAATGTGCCGGTTTACA+AGG + chr1.2:23611721-23611740 MS.gene026194:CDS 40.0%
!! TTGATGATTGGTTTCCACTC+GGG + chr1.2:23612343-23612362 MS.gene026194:CDS 40.0%
AAACCCTAGAAACACGGTGA+TGG - chr1.2:23610247-23610266 None:intergenic 45.0%
CAAGACATCAGGAGAGAACA+TGG - chr1.2:23611696-23611715 None:intergenic 45.0%
GAACTTGAGTACTTCAGCGA+TGG - chr1.2:23610356-23610375 None:intergenic 45.0%
GCAGGAACTGAAATTCTGCA+TGG - chr1.2:23612183-23612202 None:intergenic 45.0%
GCTCCTGAGGCTTCTAAATA+TGG + chr1.2:23610192-23610211 MS.gene026194:CDS 45.0%
TTACAAGGCGATGCAAAAGC+CGG + chr1.2:23611736-23611755 MS.gene026194:CDS 45.0%
! TCCTGCAGTATCTTCCCTTT+TGG + chr1.2:23613378-23613397 MS.gene026194:CDS 45.0%
!! TGATGATTGGTTTCCACTCG+GGG + chr1.2:23612344-23612363 MS.gene026194:CDS 45.0%
!!! TAATTTTATTCAAAATTTTA+GGG + chr1.2:23611344-23611363 MS.gene026194:intron 5.0%
!!! TTAATTTTATTCAAAATTTT+AGG + chr1.2:23611343-23611362 MS.gene026194:intron 5.0%
AATTGAGAGGCTGCAGAGCT+AGG - chr1.2:23611581-23611600 None:intergenic 50.0%
GACATGCAGCCTCTGCTTTA+GGG + chr1.2:23612620-23612639 MS.gene026194:CDS 50.0%
GCCAAAAGGGAAGATACTGC+AGG - chr1.2:23613382-23613401 None:intergenic 50.0%
GTAATTCCGCCACTATGCAG+CGG + chr1.2:23612021-23612040 MS.gene026194:intron 50.0%
TACAAGGCGATGCAAAAGCC+GGG + chr1.2:23611737-23611756 MS.gene026194:CDS 50.0%
TGACATGCAGCCTCTGCTTT+AGG + chr1.2:23612619-23612638 MS.gene026194:CDS 50.0%
GCAGGATTAGAGGCAGCGAT+TGG - chr1.2:23610618-23610637 None:intergenic 55.0%
TGCAGCGGCGTAGGAACAAT+AGG + chr1.2:23612036-23612055 MS.gene026194:intron 55.0%
AATGGAGACTGTGGCAGCCG+CGG - chr1.2:23611235-23611254 None:intergenic 60.0%
GCTCGATCCGACGTGTCTTC+AGG - chr1.2:23612492-23612511 None:intergenic 60.0%
GTTCCTACGCCGCTGCATAG+TGG - chr1.2:23612033-23612052 None:intergenic 60.0%
CCTACGCCGCTGCATAGTGG+CGG - chr1.2:23612030-23612049 None:intergenic 65.0%
CCGCCACTATGCAGCGGCGT+AGG + chr1.2:23612027-23612046 MS.gene026194:intron 70.0%
TCGCTAGCTGCAGCCCCGAG+TGG - chr1.2:23612360-23612379 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 23610108 23613423 23610108 ID=MS.gene026194
chr1.2 mRNA 23610108 23613423 23610108 ID=MS.gene026194.t1;Parent=MS.gene026194
chr1.2 exon 23610108 23610213 23610108 ID=MS.gene026194.t1.exon1;Parent=MS.gene026194.t1
chr1.2 CDS 23610108 23610213 23610108 ID=cds.MS.gene026194.t1;Parent=MS.gene026194.t1
chr1.2 exon 23610595 23610751 23610595 ID=MS.gene026194.t1.exon2;Parent=MS.gene026194.t1
chr1.2 CDS 23610595 23610751 23610595 ID=cds.MS.gene026194.t1;Parent=MS.gene026194.t1
chr1.2 exon 23610843 23611062 23610843 ID=MS.gene026194.t1.exon3;Parent=MS.gene026194.t1
chr1.2 CDS 23610843 23611062 23610843 ID=cds.MS.gene026194.t1;Parent=MS.gene026194.t1
chr1.2 exon 23611226 23611279 23611226 ID=MS.gene026194.t1.exon4;Parent=MS.gene026194.t1
chr1.2 CDS 23611226 23611279 23611226 ID=cds.MS.gene026194.t1;Parent=MS.gene026194.t1
chr1.2 exon 23611365 23611444 23611365 ID=MS.gene026194.t1.exon5;Parent=MS.gene026194.t1
chr1.2 CDS 23611365 23611444 23611365 ID=cds.MS.gene026194.t1;Parent=MS.gene026194.t1
chr1.2 exon 23611532 23611809 23611532 ID=MS.gene026194.t1.exon6;Parent=MS.gene026194.t1
chr1.2 CDS 23611532 23611809 23611532 ID=cds.MS.gene026194.t1;Parent=MS.gene026194.t1
chr1.2 exon 23612310 23612705 23612310 ID=MS.gene026194.t1.exon7;Parent=MS.gene026194.t1
chr1.2 CDS 23612310 23612705 23612310 ID=cds.MS.gene026194.t1;Parent=MS.gene026194.t1
chr1.2 exon 23612802 23612977 23612802 ID=MS.gene026194.t1.exon8;Parent=MS.gene026194.t1
chr1.2 CDS 23612802 23612977 23612802 ID=cds.MS.gene026194.t1;Parent=MS.gene026194.t1
chr1.2 exon 23613148 23613423 23613148 ID=MS.gene026194.t1.exon9;Parent=MS.gene026194.t1
chr1.2 CDS 23613148 23613423 23613148 ID=cds.MS.gene026194.t1;Parent=MS.gene026194.t1
Gene Sequence

>MS.gene026194

ATGACTAACATTACTCAAGAATGTCCAACTTATTATCCATCAGAACAAGAGTTTGAGCATCCTTTAGTTTATATGCAGAAAATTGCTCCTGAGGCTTCTAAATATGGTAATAACTGATTATGTATTATTTTATTTTCCATCACCGTGTTTCTAGGGTTTTTTTTATCTGTCATCAAACAAAGTTATGCAACATTATTGTTTGTCTTCCCAACTATAGTAAGAATGCTACTTACTTTCTTTTGGATCCATCGCTGAAGTACTCAAGTTCGCGTGCATGTTTAGATTAACGGTGAATTTGTAAAATCAATGTGACAAAGTGAAACTCCAAAATATAGGTTTTACTAAAATCAGAGTGGCACGCTATGATTTGTCAGAACGATGTAATCTAATATAGGACAAACTTGTCTACAACAGATTCTGCATTTGTAGGTCTTGTTTTTTTTTTTTCCTTCTGTTTGTATGCTTATATTTGATCTTAATCTTTCAGGTATATGCAAAATTGTTTCACCAATCGCTGCCTCTAATCCTGCTTCTTTTGTCTTAACGGAGGAGAAAAAGGATTTTAAGTTTAACACAATTGTACAGCCTCTTAGGGTTTTCAAATCAAATGAGATGGATAAAATAACTTTTTCTAAGAGAAGAAGGTAAGAAAGAACATAAAGTTTTCTTCAGTGTTTTAAACAACTTGAATGATGAAAAATTAACTAACTTGGTTTTTGATATTGTTTGTACTAGAAAATATACATATCATGAATTTGAAGCTCTTGCAAACAAGGCATTTTCCAATAGATTTTACGGTAAAGAAGATCTCTCTTGTTTAGATATCGAAAAAGTGTTCTGGCACGAAATAATACATGGAGAGAAAGGAACAGTTGAGTATGGAGTCAATGTTGAGGAAAGCGCCTTTTCAAGTGATCCTGATGATAAGCTTGGAACAAGCAATTTCAATTTGAAGGTTTCTTTTCAAAATTTTTGTTTGCTAAATTCATTGTTAGTTTTGTCTTAACATCTTTAACTATTGAGTTTATATTTGAATTCAGTCTATTAATCTTTACTTATGGCACTATTCTTCTGTAAGTGTAATTATTGTTTGATTAACACTTTTCATTTGATTTTAGAATTTGCCGCGGCTGCCACAGTCTCCATTACGTTTACTTGACAGAAAAATTCCAGTAAGGAATCAATTTTTGTAACCTAATCTGAATTAAAAGTTGTTAATTATTACTATTATTATTTTAATTTTATTCAAAATTTTAGGGATTAACTGATCCTATGCTTTACATTGGGATGCTATTCAGTATGTTTGCATGGCATGTTGAAGATCACTATTTGTACAGGTATATTATCTTAACATTGCTTCAAATATTGTTTAAGATTGAAAATGTATAATCATATCTTAATATATAGTACCGTATTTTTTGCAGTATAAATTATCATCACTCAGGTGGAAATGAAACTTGGTATGGCGTGCCTAGCTCTGCAGCCTCTCAATTTGAAAAGATTGTCTTGAATCATGTGTATTGCAACAAAATCTTAGCAGAACATGGAGAGAATGGTGCATTCCAATTTCTTGCACAAAAAACAACCATGTTCTCTCCTGATGTCTTGTTAGAACATAATGTGCCGGTTTACAAGGCGATGCAAAAGCCGGGAGAGTTTGTCATCACTTTTCCTAATTCATATCATGCTGGATTTAGTCACGGTACTCTCTCTCTCTCTCTCTCTCTTTCTTTCTCTCTCTATAAATGTGTTGGTGTTATTATGTTTCTGATGGATATTGCTTATATTTTACGGATAAGTAGGCAGGTCGATTGAATAATAGAAAGGTACGTAGGTTTCAAGGTTAATCTTGTAAACTAGACCGTAGTATTTACACAAGTAATCAGTAAACCCTAAGCTTGCATAATAGAAAGGTAATTCCGCCACTATGCAGCGGCGTAGGAACAATAGGCCGAACTCCATAATTAAATATCGCGTGTTCTCTGTAATCTGTTTATTTTTGTACCATGCCTGAAGTTCTAATAGTTACTGCATATAGAGACATCAATTTATTGTTCTTATTAAAGTCTTTCCCATGCAGAATTTCAGTTCCTGCTATTTTAAATACTTATGTATCTTACTTGATGTGCAAGATAGCAACTAATCTAGTACAAAATCTAAAGATAGTAACTAATTATTTAATCATTTTCATGTTGATTTTAGGTTTTAACTGTGGAGAAGCTGTAAACTTTGCTATTGATGATTGGTTTCCACTCGGGGCTGCAGCTAGCGAACGTTATTCGCATCTCAAAATGCTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGAAGCATTGCTTATCTACAACTCCTCAAAAGATAGAGGTTACAAAATCAAACCTGAAGACACGTCGGATCGAGCTATTGTACTGTCTTTCTTGCATCTTATTCAATTTTATAAGACATCATTATCACGGTTCGACAGTTCGATAAAGCTTTCAAGCTATTCAAATACATCATTAGGTTCTGTGACATGCAGCCTCTGCTTTAGGGATTGTTATGTAGCTTTCTTGTTGTGCAAGAAATGCTATTCAGATCCAATTTGCCTTTTCCATGGTAAGACCTCATTATTCTATTTGACTATTTCAGAAATTGTTATTTAATTTGCTTGTGTTATTGATGGATAAACTTGCTTATTATGGTTATATTCAGACATTGTGCCACAAAATTGTTTATGTGGGAGACAACATACTGTATTTAAGAGGAATGACATGTTAGAACTCGAAGATGCTGCCAAAAGTTTTCAACTGGAAAAGGAATGCATCGACGCATTATCTTTAACAAATTTATTCTCCTATAACATAAATGAATACATCAAAGAACACAAGGTATGTGAAAGTCTAAACTATGATATTGATTTACAATTTAGAATCCTCTAAACTTCATTAAAATAGTTGCATTTGTTTATTGCAATACAAGTATGCATTGCCTTATCTTCAGGTTGCTTATGTCATTGCATCTAATTGTTTGTAACTTTTGAAATTGAAACTGAAAGCAGAATAATAACTGGCATGAGGAAAAAAGTGCTAGAAGAACTGTTAACTCGCTAGGCGCAACATCTAAAATGAAAACAAGAGTTGCGAACAACATCAAGCACACTGTTGAAAATAATCAAAAGAAGACAAAGAATCGACGTAGAAACAATGCGTCTCCATCAGTGATGAGTACCAAAAGACAACGAGTCCTTTATAACTTGAGAAAACATGAATCAGAACTGATTATCGAAGTTCCTGCAGTATCTTCCCTTTTGGCGACATCTGAAAAATCAAAGTAA
Protein sequence

>MS.gene026194.t1

MTNITQECPTYYPSEQEFEHPLVYMQKIAPEASKYGICKIVSPIAASNPASFVLTEEKKDFKFNTIVQPLRVFKSNEMDKITFSKRRRKYTYHEFEALANKAFSNRFYGKEDLSCLDIEKVFWHEIIHGEKGTVEYGVNVEESAFSSDPDDKLGTSNFNLKNLPRLPQSPLRLLDRKIPGLTDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGGNETWYGVPSSAASQFEKIVLNHVYCNKILAEHGENGAFQFLAQKTTMFSPDVLLEHNVPVYKAMQKPGEFVITFPNSYHAGFSHGFNCGEAVNFAIDDWFPLGAAASERYSHLKMLPIIPYEELLCKEALLIYNSSKDRGYKIKPEDTSDRAIVLSFLHLIQFYKTSLSRFDSSIKLSSYSNTSLGSVTCSLCFRDCYVAFLLCKKCYSDPICLFHDIVPQNCLCGRQHTVFKRNDMLELEDAAKSFQLEKECIDALSLTNLFSYNINEYIKEHKNNNWHEEKSARRTVNSLGATSKMKTRVANNIKHTVENNQKKTKNRRRNNASPSVMSTKRQRVLYNLRKHESELIIEVPAVSSLLATSEKSK