Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026197.t1 | RHN78369.1 | 84 | 567 | 91 | 0 | 1 | 567 | 18 | 584 | 3.00E-271 | 944.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026197.t1 | Q336N8 | 50.9 | 475 | 230 | 2 | 13 | 485 | 88 | 561 | 6.0e-135 | 482.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026197.t1 | G7IBD2 | 84.0 | 567 | 91 | 0 | 1 | 567 | 1 | 567 | 2.2e-271 | 944.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene026197.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026197.t1 | MTR_1g038400 | 94.356 | 567 | 32 | 0 | 1 | 567 | 1 | 567 | 0.0 | 1094 |
| MS.gene026197.t1 | MTR_1g038370 | 72.461 | 581 | 112 | 4 | 22 | 576 | 2 | 560 | 0.0 | 854 |
| MS.gene026197.t1 | MTR_5g029370 | 56.996 | 486 | 208 | 1 | 10 | 495 | 71 | 555 | 0.0 | 591 |
| MS.gene026197.t1 | MTR_5g029370 | 56.996 | 486 | 208 | 1 | 10 | 495 | 71 | 555 | 0.0 | 591 |
| MS.gene026197.t1 | MTR_7g407000 | 79.167 | 144 | 12 | 2 | 201 | 343 | 28 | 154 | 2.85e-74 | 233 |
| MS.gene026197.t1 | MTR_3g075210 | 37.466 | 371 | 196 | 8 | 17 | 366 | 7 | 362 | 6.88e-68 | 239 |
| MS.gene026197.t1 | MTR_8g089260 | 36.010 | 386 | 174 | 8 | 25 | 345 | 30 | 407 | 2.90e-56 | 204 |
| MS.gene026197.t1 | MTR_1g078070 | 30.394 | 533 | 274 | 16 | 24 | 475 | 146 | 662 | 7.48e-55 | 201 |
| MS.gene026197.t1 | MTR_1g078070 | 30.394 | 533 | 274 | 16 | 24 | 475 | 146 | 662 | 1.22e-54 | 200 |
| MS.gene026197.t1 | MTR_5g010300 | 33.566 | 429 | 243 | 15 | 107 | 512 | 302 | 711 | 5.75e-54 | 199 |
| MS.gene026197.t1 | MTR_5g010300 | 33.566 | 429 | 243 | 15 | 107 | 512 | 302 | 711 | 7.76e-54 | 198 |
| MS.gene026197.t1 | MTR_5g010300 | 33.566 | 429 | 243 | 15 | 107 | 512 | 302 | 711 | 8.77e-54 | 198 |
| MS.gene026197.t1 | MTR_5g010300 | 39.322 | 295 | 150 | 8 | 107 | 382 | 302 | 586 | 2.27e-51 | 191 |
| MS.gene026197.t1 | MTR_2g047130 | 33.416 | 404 | 188 | 11 | 25 | 359 | 46 | 437 | 2.33e-51 | 190 |
| MS.gene026197.t1 | MTR_2g047130 | 33.416 | 404 | 188 | 11 | 25 | 359 | 49 | 440 | 2.35e-51 | 190 |
| MS.gene026197.t1 | MTR_1g094740 | 44.681 | 188 | 100 | 1 | 172 | 359 | 291 | 474 | 6.20e-51 | 189 |
| MS.gene026197.t1 | MTR_7g097070 | 27.500 | 400 | 261 | 13 | 176 | 553 | 338 | 730 | 1.28e-29 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026197.t1 | AT5G46910 | 53.909 | 486 | 223 | 1 | 2 | 487 | 77 | 561 | 0.0 | 571 |
| MS.gene026197.t1 | AT5G46910 | 53.909 | 486 | 223 | 1 | 2 | 487 | 77 | 561 | 0.0 | 569 |
| MS.gene026197.t1 | AT2G34880 | 31.629 | 528 | 278 | 18 | 25 | 483 | 58 | 571 | 4.55e-60 | 214 |
| MS.gene026197.t1 | AT3G48430 | 33.506 | 385 | 214 | 7 | 12 | 359 | 4 | 383 | 4.26e-59 | 214 |
| MS.gene026197.t1 | AT1G63490 | 41.328 | 271 | 133 | 6 | 107 | 360 | 46 | 307 | 1.13e-57 | 209 |
| MS.gene026197.t1 | AT1G63490 | 41.697 | 271 | 132 | 7 | 107 | 360 | 299 | 560 | 1.58e-57 | 209 |
| MS.gene026197.t1 | AT1G63490 | 41.697 | 271 | 132 | 7 | 107 | 360 | 299 | 560 | 1.61e-57 | 209 |
| MS.gene026197.t1 | AT1G30810 | 30.427 | 539 | 277 | 16 | 25 | 483 | 56 | 576 | 1.37e-54 | 198 |
| MS.gene026197.t1 | AT1G30810 | 30.427 | 539 | 277 | 16 | 25 | 483 | 56 | 576 | 1.37e-54 | 198 |
| MS.gene026197.t1 | AT1G30810 | 30.427 | 539 | 277 | 16 | 25 | 483 | 56 | 576 | 1.37e-54 | 198 |
| MS.gene026197.t1 | AT4G20400 | 26.756 | 598 | 342 | 16 | 25 | 536 | 53 | 640 | 2.18e-53 | 196 |
| MS.gene026197.t1 | AT1G08620 | 33.333 | 420 | 194 | 12 | 25 | 369 | 143 | 551 | 1.59e-52 | 194 |
| MS.gene026197.t1 | AT1G08620 | 33.333 | 420 | 194 | 12 | 25 | 369 | 143 | 551 | 1.59e-52 | 194 |
| MS.gene026197.t1 | AT1G08620 | 33.333 | 420 | 194 | 12 | 25 | 369 | 143 | 551 | 1.59e-52 | 194 |
| MS.gene026197.t1 | AT1G08620 | 33.333 | 420 | 194 | 12 | 25 | 369 | 157 | 565 | 1.63e-52 | 194 |
| MS.gene026197.t1 | AT5G04240 | 47.340 | 188 | 95 | 1 | 172 | 359 | 259 | 442 | 6.23e-52 | 192 |
| MS.gene026197.t1 | AT4G20400 | 27.087 | 587 | 332 | 16 | 36 | 536 | 7 | 583 | 1.34e-50 | 187 |
| MS.gene026197.t1 | AT2G38950 | 28.346 | 381 | 216 | 12 | 22 | 359 | 102 | 468 | 7.42e-33 | 134 |
| MS.gene026197.t1 | AT1G63490 | 51.724 | 87 | 42 | 0 | 274 | 360 | 15 | 101 | 4.20e-24 | 107 |
Find 97 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCCATTCTACAGTCTTTC+TGG | 0.125843 | 1.2:+23583094 | MS.gene026197:CDS |
| TTGATTTGGATGATCTAAAT+TGG | 0.203515 | 1.2:+23580933 | MS.gene026197:CDS |
| TGTCTTAATGAAAGAGAAAA+AGG | 0.242054 | 1.2:+23581303 | MS.gene026197:CDS |
| GCTCCCAAGGCTTCTAAATA+TGG | 0.277191 | 1.2:+23581037 | MS.gene026197:CDS |
| AAACAATTGTACAACCTCTT+AGG | 0.278337 | 1.2:+23581338 | MS.gene026197:CDS |
| TTGGTGATTGGTTTCCATTT+GGG | 0.283394 | 1.2:+23582926 | MS.gene026197:CDS |
| TCCTGCAATATCTTCTGTTT+TGG | 0.293249 | 1.2:+23583957 | MS.gene026197:CDS |
| AATCCAGCATGATATGAATT+AGG | 0.298533 | 1.2:-23582379 | None:intergenic |
| TTCTGAACTGTAAAATCTAT+TGG | 0.303477 | 1.2:-23581553 | None:intergenic |
| CAAATCGAGTAAACTTGATT+TGG | 0.306770 | 1.2:+23580919 | MS.gene026197:CDS |
| AGTTCCTCATATGGAATTAT+AGG | 0.316333 | 1.2:-23582988 | None:intergenic |
| TGTTCTGATGGATGGTATAC+TGG | 0.323713 | 1.2:-23580977 | None:intergenic |
| GAGAAGGGAACAGTTGAGTA+TGG | 0.324983 | 1.2:+23581630 | MS.gene026197:CDS |
| ACTGAAAGCAGAATGATAAT+TGG | 0.325763 | 1.2:+23583713 | MS.gene026197:intron |
| GCAGAATTAGAGGCACTAAT+TGG | 0.332580 | 1.2:-23581274 | None:intergenic |
| ATAAAGGGTTCGCGGTCTTT+TGG | 0.338413 | 1.2:-23583896 | None:intergenic |
| ATTGGTGATTGGTTTCCATT+TGG | 0.339040 | 1.2:+23582925 | MS.gene026197:CDS |
| TTACAAAGAAGTTCCTCATA+TGG | 0.344918 | 1.2:-23582997 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.347643 | 1.2:-23583273 | None:intergenic |
| CTTGTTCCAAGTTTATCATC+AGG | 0.348467 | 1.2:-23581687 | None:intergenic |
| GGATGGTATACTGGACATTC+TGG | 0.356909 | 1.2:-23580968 | None:intergenic |
| TATATCCTTCTCATTCCATT+TGG | 0.357030 | 1.2:-23581365 | None:intergenic |
| GACAAACTCAGCAGAATTAG+AGG | 0.367979 | 1.2:-23581284 | None:intergenic |
| AGCTCTTCAAATACATCATT+AGG | 0.370354 | 1.2:+23583177 | MS.gene026197:CDS |
| TAAACTTTGCTATTGGTGAT+TGG | 0.380389 | 1.2:+23582914 | MS.gene026197:CDS |
| AACAAGCAAATTCAATTTGA+AGG | 0.404587 | 1.2:+23581704 | MS.gene026197:CDS |
| GAAGAACTGTCAACTCTGTA+AGG | 0.420264 | 1.2:+23583755 | MS.gene026197:CDS |
| ACAAGAATTTGAGCATCCTT+TGG | 0.422698 | 1.2:+23580997 | MS.gene026197:CDS |
| TCATGTTGTAACAAGACATT+AGG | 0.439737 | 1.2:-23582304 | None:intergenic |
| TTGCTTGCTGCAGCCCCAAA+TGG | 0.446449 | 1.2:-23582940 | None:intergenic |
| GAAGCTGTAAACTTTGCTAT+TGG | 0.449681 | 1.2:+23582907 | MS.gene026197:CDS |
| TGCTCAAATTCTTGTTCTGA+TGG | 0.458499 | 1.2:-23580989 | None:intergenic |
| GCTACCTATAATTCCATATG+AGG | 0.458631 | 1.2:+23582984 | MS.gene026197:CDS |
| CTGATCCTATGCTTTACATT+GGG | 0.461409 | 1.2:+23581969 | MS.gene026197:CDS |
| ACATGATGTGCCGGTTTACA+AGG | 0.470430 | 1.2:+23582321 | MS.gene026197:CDS |
| TTCCATTTGGAAAGCCTAAG+AGG | 0.471534 | 1.2:-23581352 | None:intergenic |
| CATACCATATTTAGAAGCCT+TGG | 0.477502 | 1.2:-23581041 | None:intergenic |
| TACAAGGCGGTGCAAAAGCC+AGG | 0.481676 | 1.2:+23582337 | MS.gene026197:CDS |
| TTTCCTAATTCATATCATGC+TGG | 0.481919 | 1.2:+23582376 | MS.gene026197:CDS |
| AACCTCTTAGGCTTTCCAAA+TGG | 0.483332 | 1.2:+23581350 | MS.gene026197:CDS |
| ACTGATCCTATGCTTTACAT+TGG | 0.488180 | 1.2:+23581968 | MS.gene026197:CDS |
| ATACCATATTTAGAAGCCTT+GGG | 0.492374 | 1.2:-23581040 | None:intergenic |
| CAAATTCTTGTTCTGATGGA+TGG | 0.494920 | 1.2:-23580985 | None:intergenic |
| GGTGGAAATAAAACTTGGTA+TGG | 0.496778 | 1.2:+23582151 | MS.gene026197:CDS |
| ATTTACATATCAAGAATTTG+AGG | 0.498743 | 1.2:+23581509 | MS.gene026197:CDS |
| TGACATGCAGCCTCTGCCAT+AGG | 0.501176 | 1.2:+23583205 | MS.gene026197:CDS |
| ACCAAAACAGAAGATATTGC+AGG | 0.502442 | 1.2:-23583958 | None:intergenic |
| AATTGAGAGGCTGCCGAGCT+AGG | 0.502653 | 1.2:-23582178 | None:intergenic |
| TGGTGATTGGTTTCCATTTG+GGG | 0.516058 | 1.2:+23582927 | MS.gene026197:CDS |
| TCTGCAGAAAATTGCTCCCA+AGG | 0.516490 | 1.2:+23581024 | MS.gene026197:CDS |
| TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1.2:+23581993 | MS.gene026197:CDS |
| TAGAAGATCACTATTTGTAC+AGG | 0.521776 | 1.2:+23582020 | MS.gene026197:CDS |
| CGAAATGATACATGGAGAGA+AGG | 0.529280 | 1.2:+23581614 | MS.gene026197:CDS |
| CTCAAATTATAAAGGGTTCG+CGG | 0.531379 | 1.2:-23583904 | None:intergenic |
| ACTTAGGTGGAAATAAAACT+TGG | 0.531960 | 1.2:+23582146 | MS.gene026197:CDS |
| TGTTGTAACAAGACATTAGG+AGG | 0.534027 | 1.2:-23582301 | None:intergenic |
| AGCATAAATTATCATCACTT+AGG | 0.537173 | 1.2:+23582130 | MS.gene026197:intron |
| TTACCTTCCTCTCTTAGAGA+AGG | 0.537337 | 1.2:-23581392 | None:intergenic |
| TTAGCAGAACATGGAGAGAA+TGG | 0.538483 | 1.2:+23582241 | MS.gene026197:CDS |
| TGTGACCCTGATGATAAACT+TGG | 0.546502 | 1.2:+23581681 | MS.gene026197:CDS |
| TTGGTATGGTGTGCCTAGCT+CGG | 0.549146 | 1.2:+23582165 | MS.gene026197:CDS |
| AAGCTACATAACAATCCCTA+TGG | 0.550057 | 1.2:-23583221 | None:intergenic |
| AAGGTGATGACAAACTCTCC+TGG | 0.552268 | 1.2:-23582355 | None:intergenic |
| GAGTATGGAGTCAACATTGA+GGG | 0.553863 | 1.2:+23581645 | MS.gene026197:CDS |
| ATGGAAAAGGCAAATTGGAT+AGG | 0.554570 | 1.2:-23583268 | None:intergenic |
| GACATGCAGCCTCTGCCATA+GGG | 0.557662 | 1.2:+23583206 | MS.gene026197:CDS |
| TAACCTTCTCTAAGAGAGGA+AGG | 0.559927 | 1.2:+23581389 | MS.gene026197:CDS |
| TTGTTCCAAGTTTATCATCA+GGG | 0.567712 | 1.2:-23581686 | None:intergenic |
| CAAGACATTAGGAGGGAACA+TGG | 0.568622 | 1.2:-23582293 | None:intergenic |
| TTCTGGCACGAAATGATACA+TGG | 0.570556 | 1.2:+23581606 | MS.gene026197:CDS |
| ATGTATCATTTCGTGCCAGA+AGG | 0.570835 | 1.2:-23581604 | None:intergenic |
| CAAAAGCAAACTCGAAGTCA+TGG | 0.572919 | 1.2:+23583062 | MS.gene026197:CDS |
| TACTTCTCCATCAGTGATGA+GGG | 0.579966 | 1.2:+23583873 | MS.gene026197:CDS |
| GAAATGATACATGGAGAGAA+GGG | 0.582021 | 1.2:+23581615 | MS.gene026197:CDS |
| ATTTGAGGCTATCGCAAACA+AGG | 0.584174 | 1.2:+23581524 | MS.gene026197:CDS |
| ATAATAACCTTCTCTAAGAG+AGG | 0.584975 | 1.2:+23581385 | MS.gene026197:CDS |
| ATAAATTATCATCACTTAGG+TGG | 0.586118 | 1.2:+23582133 | MS.gene026197:CDS |
| CATAACAATCCCTATGGCAG+AGG | 0.587190 | 1.2:-23583215 | None:intergenic |
| TATCATGCTGGATTTAGTCA+TGG | 0.587724 | 1.2:+23582388 | MS.gene026197:CDS |
| AAGAACTGTCAACTCTGTAA+GGG | 0.595848 | 1.2:+23583756 | MS.gene026197:CDS |
| AACAAAATCTTAGCAGAACA+TGG | 0.596081 | 1.2:+23582232 | MS.gene026197:CDS |
| CTTGTTACAACATGATGTGC+CGG | 0.599827 | 1.2:+23582312 | MS.gene026197:CDS |
| ATACTTCTCCATCAGTGATG+AGG | 0.601559 | 1.2:+23583872 | MS.gene026197:CDS |
| ATGCCAGAAAGACTGTAGAA+TGG | 0.604350 | 1.2:-23583097 | None:intergenic |
| GCTTTCCAAATGGAATGAGA+AGG | 0.605970 | 1.2:+23581360 | MS.gene026197:CDS |
| AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1.2:-23581974 | None:intergenic |
| TAAACTGAAAACAAGAGTCA+CGG | 0.629474 | 1.2:+23583789 | MS.gene026197:CDS |
| AAAAGAATCAGAAGATGACA+AGG | 0.635509 | 1.2:+23583833 | MS.gene026197:CDS |
| CCGTTGCGTTTAGTTGACAG+AGG | 0.635990 | 1.2:+23581831 | MS.gene026197:CDS |
| AGCATGATATGAATTAGGAA+AGG | 0.636839 | 1.2:-23582374 | None:intergenic |
| GCAGAATGATAATTGGCATG+AGG | 0.637120 | 1.2:+23583720 | MS.gene026197:intron |
| CTTGAATTTAGAATTTGGCG+CGG | 0.653536 | 1.2:+23581796 | MS.gene026197:intron |
| TGAGTATGGAGTCAACATTG+AGG | 0.665976 | 1.2:+23581644 | MS.gene026197:CDS |
| CCTCTGTCAACTAAACGCAA+CGG | 0.668558 | 1.2:-23581831 | None:intergenic |
| ACTAAACGCAACGGAGACTG+CGG | 0.678157 | 1.2:-23581822 | None:intergenic |
| GTTGTAACAAGACATTAGGA+GGG | 0.697642 | 1.2:-23582300 | None:intergenic |
| TGATGTGCCGGTTTACAAGG+CGG | 0.701604 | 1.2:+23582324 | MS.gene026197:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAAAAAATAAGCT+CGG | - | chr1.2:23581221-23581240 | None:intergenic | 10.0% |
| !!! | AATTCTGTTTTAAAATTTTA+GGG | + | chr1.2:23581941-23581960 | MS.gene026197:intron | 10.0% |
| !!! | GTTTATTTTTTTCATTATTT+TGG | - | chr1.2:23581456-23581475 | None:intergenic | 10.0% |
| !!! | TAATTCTGTTTTAAAATTTT+AGG | + | chr1.2:23581940-23581959 | MS.gene026197:intron | 10.0% |
| !! | ATGAAAAAAATAAACTACTT+TGG | + | chr1.2:23581461-23581480 | MS.gene026197:intron | 15.0% |
| !! | TTTATTCTTGATAGATAAAT+TGG | + | chr1.2:23583336-23583355 | MS.gene026197:intron | 15.0% |
| !!! | ATGTTTTCTCAAATTATAAA+GGG | - | chr1.2:23583914-23583933 | None:intergenic | 15.0% |
| !!! | TTATACTTGAATTTAGAATT+TGG | + | chr1.2:23581791-23581810 | MS.gene026197:intron | 15.0% |
| !!! | TTATTTATTTTGCATATTAC+AGG | + | chr1.2:23581232-23581251 | MS.gene026197:intron | 15.0% |
| !! | AATTATCAAATAGACAAATG+AGG | - | chr1.2:23583301-23583320 | None:intergenic | 20.0% |
| !! | ATTTACATATCAAGAATTTG+AGG | + | chr1.2:23581509-23581528 | MS.gene026197:CDS | 20.0% |
| !!! | CATGTTTTCTCAAATTATAA+AGG | - | chr1.2:23583915-23583934 | None:intergenic | 20.0% |
| !!! | TTTATTTTCTTGTTGAGTTT+AGG | + | chr1.2:23582871-23582890 | MS.gene026197:intron | 20.0% |
| ! | AACAAGCAAATTCAATTTGA+AGG | + | chr1.2:23581704-23581723 | MS.gene026197:CDS | 25.0% |
| ! | AAGTATGCAACATAAGTATT+TGG | - | chr1.2:23582788-23582807 | None:intergenic | 25.0% |
| ! | AGCATAAATTATCATCACTT+AGG | + | chr1.2:23582130-23582149 | MS.gene026197:intron | 25.0% |
| ! | ATAAATTATCATCACTTAGG+TGG | + | chr1.2:23582133-23582152 | MS.gene026197:CDS | 25.0% |
| ! | ATAATAACTTAATCCAGACT+AGG | - | chr1.2:23581885-23581904 | None:intergenic | 25.0% |
| ! | CATGTCATTCTTCTTAAAAA+CGG | - | chr1.2:23583421-23583440 | None:intergenic | 25.0% |
| ! | CCTAAACTTGAAAAATGTAA+AGG | + | chr1.2:23582601-23582620 | MS.gene026197:intron | 25.0% |
| ! | GAACAAGCAATATTTGATTA+CGG | - | chr1.2:23582659-23582678 | None:intergenic | 25.0% |
| ! | GATTACTTGTGTAAATACTA+TGG | - | chr1.2:23582574-23582593 | None:intergenic | 25.0% |
| ! | TATGCTGCAAATAAAAAGAA+GGG | - | chr1.2:23582116-23582135 | None:intergenic | 25.0% |
| ! | TCAAGGTTATTCTTATAAAC+TGG | + | chr1.2:23582547-23582566 | MS.gene026197:intron | 25.0% |
| ! | TGTCTTAATGAAAGAGAAAA+AGG | + | chr1.2:23581303-23581322 | MS.gene026197:CDS | 25.0% |
| ! | TTATGCTGCAAATAAAAAGA+AGG | - | chr1.2:23582117-23582136 | None:intergenic | 25.0% |
| ! | TTCTGAACTGTAAAATCTAT+TGG | - | chr1.2:23581556-23581575 | None:intergenic | 25.0% |
| !! | ACATAAGTATTTGGAATATC+AGG | - | chr1.2:23582779-23582798 | None:intergenic | 25.0% |
| !! | TTTACATTTTGCACTAGATA+GGG | - | chr1.2:23582836-23582855 | None:intergenic | 25.0% |
| !! | TTTTACCTGTTGAAAACTTT+TGG | - | chr1.2:23583463-23583482 | None:intergenic | 25.0% |
| !!! | CCTTTACATTTTTCAAGTTT+AGG | - | chr1.2:23582604-23582623 | None:intergenic | 25.0% |
| !!! | TTGATTTGGATGATCTAAAT+TGG | + | chr1.2:23580933-23580952 | MS.gene026197:CDS | 25.0% |
| !!! | TTGTTTTTTGTGCAAGAAAT+TGG | - | chr1.2:23582273-23582292 | None:intergenic | 25.0% |
| AAAAGAATCAGAAGATGACA+AGG | + | chr1.2:23583833-23583852 | MS.gene026197:CDS | 30.0% | |
| AAACAATTGTACAACCTCTT+AGG | + | chr1.2:23581338-23581357 | MS.gene026197:CDS | 30.0% | |
| AACAAAATCTTAGCAGAACA+TGG | + | chr1.2:23582232-23582251 | MS.gene026197:CDS | 30.0% | |
| AATCCAGCATGATATGAATT+AGG | - | chr1.2:23582382-23582401 | None:intergenic | 30.0% | |
| ACTGAAAGCAGAATGATAAT+TGG | + | chr1.2:23583713-23583732 | MS.gene026197:intron | 30.0% | |
| ACTTAGGTGGAAATAAAACT+TGG | + | chr1.2:23582146-23582165 | MS.gene026197:CDS | 30.0% | |
| ACTTATGTTGCATACTTGTT+CGG | + | chr1.2:23582791-23582810 | MS.gene026197:intron | 30.0% | |
| AGCATGATATGAATTAGGAA+AGG | - | chr1.2:23582377-23582396 | None:intergenic | 30.0% | |
| AGCTCTTCAAATACATCATT+AGG | + | chr1.2:23583177-23583196 | MS.gene026197:CDS | 30.0% | |
| AGTATGGCTATCAAATATGT+TGG | + | chr1.2:23581187-23581206 | MS.gene026197:intron | 30.0% | |
| AGTTCCTCATATGGAATTAT+AGG | - | chr1.2:23582991-23583010 | None:intergenic | 30.0% | |
| ATACCATATTTAGAAGCCTT+GGG | - | chr1.2:23581043-23581062 | None:intergenic | 30.0% | |
| CAAATCGAGTAAACTTGATT+TGG | + | chr1.2:23580919-23580938 | MS.gene026197:CDS | 30.0% | |
| CTCTATATGCACAAACTATT+AGG | - | chr1.2:23582718-23582737 | None:intergenic | 30.0% | |
| GTCCAAAAGTAAACAGATTA+CGG | - | chr1.2:23582683-23582702 | None:intergenic | 30.0% | |
| TAAACTGAAAACAAGAGTCA+CGG | + | chr1.2:23583789-23583808 | MS.gene026197:CDS | 30.0% | |
| TACTGCATTACTTCATCTTT+AGG | + | chr1.2:23583642-23583661 | MS.gene026197:intron | 30.0% | |
| TAGAAGATCACTATTTGTAC+AGG | + | chr1.2:23582020-23582039 | MS.gene026197:CDS | 30.0% | |
| TAGCCATACTAAGGAAAAAA+CGG | - | chr1.2:23581177-23581196 | None:intergenic | 30.0% | |
| TATATCCTTCTCATTCCATT+TGG | - | chr1.2:23581368-23581387 | None:intergenic | 30.0% | |
| TCATGTTGTAACAAGACATT+AGG | - | chr1.2:23582307-23582326 | None:intergenic | 30.0% | |
| TCTAGTGCAAAATGTAAAGA+TGG | + | chr1.2:23582838-23582857 | MS.gene026197:intron | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | - | chr1.2:23583000-23583019 | None:intergenic | 30.0% | |
| TTGTTCCAAGTTTATCATCA+GGG | - | chr1.2:23581689-23581708 | None:intergenic | 30.0% | |
| TTTCCTAATTCATATCATGC+TGG | + | chr1.2:23582376-23582395 | MS.gene026197:CDS | 30.0% | |
| ! | ATAATAACCTTCTCTAAGAG+AGG | + | chr1.2:23581385-23581404 | MS.gene026197:CDS | 30.0% |
| ! | ATTTTCTGCAGATAAACCAA+AGG | - | chr1.2:23581016-23581035 | None:intergenic | 30.0% |
| ! | CATATTTGATAGCCATACTA+AGG | - | chr1.2:23581186-23581205 | None:intergenic | 30.0% |
| ! | CTTTACATTTTGCACTAGAT+AGG | - | chr1.2:23582837-23582856 | None:intergenic | 30.0% |
| ! | TAATGGAAAGGTATGATTCA+AGG | + | chr1.2:23582530-23582549 | MS.gene026197:intron | 30.0% |
| ! | TTGCTATTGCTCATAGTTTA+CGG | + | chr1.2:23582485-23582504 | MS.gene026197:intron | 30.0% |
| ! | TTTGTAACTTCTGACTTTTG+AGG | - | chr1.2:23583046-23583065 | None:intergenic | 30.0% |
| !! | TAAACTTTGCTATTGGTGAT+TGG | + | chr1.2:23582914-23582933 | MS.gene026197:CDS | 30.0% |
| !!! | TTGAGTTTAGGTTTTAACTG+TGG | + | chr1.2:23582883-23582902 | MS.gene026197:intron | 30.0% |
| AAAACCCCTCATGCATAAAA+TGG | + | chr1.2:23581147-23581166 | MS.gene026197:intron | 35.0% | |
| AAGAACTGTCAACTCTGTAA+GGG | + | chr1.2:23583756-23583775 | MS.gene026197:CDS | 35.0% | |
| AAGCTACATAACAATCCCTA+TGG | - | chr1.2:23583224-23583243 | None:intergenic | 35.0% | |
| ACAAGAATTTGAGCATCCTT+TGG | + | chr1.2:23580997-23581016 | MS.gene026197:CDS | 35.0% | |
| ACCAAAACAGAAGATATTGC+AGG | - | chr1.2:23583961-23583980 | None:intergenic | 35.0% | |
| ACTGATCCTATGCTTTACAT+TGG | + | chr1.2:23581968-23581987 | MS.gene026197:CDS | 35.0% | |
| ATGGAAAAGGCAAATTGGAT+AGG | - | chr1.2:23583271-23583290 | None:intergenic | 35.0% | |
| CAAATTCTTGTTCTGATGGA+TGG | - | chr1.2:23580988-23581007 | None:intergenic | 35.0% | |
| CATACCATATTTAGAAGCCT+TGG | - | chr1.2:23581044-23581063 | None:intergenic | 35.0% | |
| CTCAAATTATAAAGGGTTCG+CGG | - | chr1.2:23583907-23583926 | None:intergenic | 35.0% | |
| CTGATCCTATGCTTTACATT+GGG | + | chr1.2:23581969-23581988 | MS.gene026197:CDS | 35.0% | |
| CTTGTTCCAAGTTTATCATC+AGG | - | chr1.2:23581690-23581709 | None:intergenic | 35.0% | |
| GAAATGATACATGGAGAGAA+GGG | + | chr1.2:23581615-23581634 | MS.gene026197:CDS | 35.0% | |
| GCTACCTATAATTCCATATG+AGG | + | chr1.2:23582984-23583003 | MS.gene026197:CDS | 35.0% | |
| GGTGGAAATAAAACTTGGTA+TGG | + | chr1.2:23582151-23582170 | MS.gene026197:CDS | 35.0% | |
| GTTGTAACAAGACATTAGGA+GGG | - | chr1.2:23582303-23582322 | None:intergenic | 35.0% | |
| TAAGCAGATCGCTTGAATAA+TGG | + | chr1.2:23582513-23582532 | MS.gene026197:intron | 35.0% | |
| TAGATATCGAAAAAGCCTTC+TGG | + | chr1.2:23581589-23581608 | MS.gene026197:CDS | 35.0% | |
| TATCATGCTGGATTTAGTCA+TGG | + | chr1.2:23582388-23582407 | MS.gene026197:CDS | 35.0% | |
| TGCTATTCAGTATGTTTGCA+TGG | + | chr1.2:23581993-23582012 | MS.gene026197:CDS | 35.0% | |
| TGCTCAAATTCTTGTTCTGA+TGG | - | chr1.2:23580992-23581011 | None:intergenic | 35.0% | |
| TGTTGTAACAAGACATTAGG+AGG | - | chr1.2:23582304-23582323 | None:intergenic | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | - | chr1.2:23583276-23583295 | None:intergenic | 35.0% | |
| ! | AAGTCCATTTTATGCATGAG+GGG | - | chr1.2:23581154-23581173 | None:intergenic | 35.0% |
| ! | AGACAAATGAGGTTTTACCA+TGG | - | chr1.2:23583290-23583309 | None:intergenic | 35.0% |
| ! | AGACGATTTTCTTTTCATCG+CGG | + | chr1.2:23581081-23581100 | MS.gene026197:intron | 35.0% |
| ! | AGATCGCTTGAATAATGGAA+AGG | + | chr1.2:23582518-23582537 | MS.gene026197:intron | 35.0% |
| ! | ATGAGGTTTTACCATGGAAA+AGG | - | chr1.2:23583284-23583303 | None:intergenic | 35.0% |
| ! | ATTTTGCACTAGATAGGGAT+AGG | - | chr1.2:23582831-23582850 | None:intergenic | 35.0% |
| ! | CTCCGTAATCTGTTTACTTT+TGG | + | chr1.2:23582678-23582697 | MS.gene026197:intron | 35.0% |
| ! | CTTGAATTTAGAATTTGGCG+CGG | + | chr1.2:23581796-23581815 | MS.gene026197:intron | 35.0% |
| ! | GAAGCTGTAAACTTTGCTAT+TGG | + | chr1.2:23582907-23582926 | MS.gene026197:CDS | 35.0% |
| ! | GAAGTCCATTTTATGCATGA+GGG | - | chr1.2:23581155-23581174 | None:intergenic | 35.0% |
| ! | GACAGTCTTTTCAAATTGAG+AGG | - | chr1.2:23582194-23582213 | None:intergenic | 35.0% |
| ! | TATCCAATTTGCCTTTTCCA+TGG | + | chr1.2:23583270-23583289 | MS.gene026197:CDS | 35.0% |
| ! | TCCTGCAATATCTTCTGTTT+TGG | + | chr1.2:23583957-23583976 | MS.gene026197:CDS | 35.0% |
| ! | TGCCAAAAACTTGCTTATGT+GGG | + | chr1.2:23583385-23583404 | MS.gene026197:CDS | 35.0% |
| !! | AATCTGTTTACTTTTGGACC+AGG | + | chr1.2:23582684-23582703 | MS.gene026197:intron | 35.0% |
| !! | ATCTGTTTACTTTTGGACCA+GGG | + | chr1.2:23582685-23582704 | MS.gene026197:intron | 35.0% |
| !! | ATTGGTGATTGGTTTCCATT+TGG | + | chr1.2:23582925-23582944 | MS.gene026197:CDS | 35.0% |
| !! | TTGGTGATTGGTTTCCATTT+GGG | + | chr1.2:23582926-23582945 | MS.gene026197:CDS | 35.0% |
| !!! | CTTCCGTTTTTTCCTTAGTA+TGG | + | chr1.2:23581171-23581190 | MS.gene026197:intron | 35.0% |
| AACCTCTTAGGCTTTCCAAA+TGG | + | chr1.2:23581350-23581369 | MS.gene026197:CDS | 40.0% | |
| AGCATCCCAATGTAAAGCAT+AGG | - | chr1.2:23581977-23581996 | None:intergenic | 40.0% | |
| ATACTTCTCCATCAGTGATG+AGG | + | chr1.2:23583872-23583891 | MS.gene026197:CDS | 40.0% | |
| ATGCCAGAAAGACTGTAGAA+TGG | - | chr1.2:23583100-23583119 | None:intergenic | 40.0% | |
| ATGTATCATTTCGTGCCAGA+AGG | - | chr1.2:23581607-23581626 | None:intergenic | 40.0% | |
| CAAAAGCAAACTCGAAGTCA+TGG | + | chr1.2:23583062-23583081 | MS.gene026197:CDS | 40.0% | |
| CGAAATGATACATGGAGAGA+AGG | + | chr1.2:23581614-23581633 | MS.gene026197:CDS | 40.0% | |
| CTTGTTACAACATGATGTGC+CGG | + | chr1.2:23582312-23582331 | MS.gene026197:CDS | 40.0% | |
| GAAGAACTGTCAACTCTGTA+AGG | + | chr1.2:23583755-23583774 | MS.gene026197:CDS | 40.0% | |
| GACAAACTCAGCAGAATTAG+AGG | - | chr1.2:23581287-23581306 | None:intergenic | 40.0% | |
| GACGCATTCAATCATGCTAT+AGG | - | chr1.2:23583523-23583542 | None:intergenic | 40.0% | |
| GAGAAAGCGAACACTAAGAA+TGG | - | chr1.2:23581760-23581779 | None:intergenic | 40.0% | |
| GAGTATGGAGTCAACATTGA+GGG | + | chr1.2:23581645-23581664 | MS.gene026197:CDS | 40.0% | |
| GCAGAATGATAATTGGCATG+AGG | + | chr1.2:23583720-23583739 | MS.gene026197:intron | 40.0% | |
| GCTTTCCAAATGGAATGAGA+AGG | + | chr1.2:23581360-23581379 | MS.gene026197:CDS | 40.0% | |
| TACTTCTCCATCAGTGATGA+GGG | + | chr1.2:23583873-23583892 | MS.gene026197:CDS | 40.0% | |
| TCCAGACTAGGTTCCTAAAA+TGG | - | chr1.2:23581873-23581892 | None:intergenic | 40.0% | |
| TCCTAAAATGGCTTCCTTAC+AGG | - | chr1.2:23581861-23581880 | None:intergenic | 40.0% | |
| TGAGTATGGAGTCAACATTG+AGG | + | chr1.2:23581644-23581663 | MS.gene026197:CDS | 40.0% | |
| TGTGACCCTGATGATAAACT+TGG | + | chr1.2:23581681-23581700 | MS.gene026197:CDS | 40.0% | |
| TTACCTTCCTCTCTTAGAGA+AGG | - | chr1.2:23581395-23581414 | None:intergenic | 40.0% | |
| TTAGCAGAACATGGAGAGAA+TGG | + | chr1.2:23582241-23582260 | MS.gene026197:CDS | 40.0% | |
| TTCCATTTGGAAAGCCTAAG+AGG | - | chr1.2:23581355-23581374 | None:intergenic | 40.0% | |
| TTCTGGCACGAAATGATACA+TGG | + | chr1.2:23581606-23581625 | MS.gene026197:CDS | 40.0% | |
| TTGACAGAGGAATTCCTGTA+AGG | + | chr1.2:23581844-23581863 | MS.gene026197:intron | 40.0% | |
| ! | ATTTGAGGCTATCGCAAACA+AGG | + | chr1.2:23581524-23581543 | MS.gene026197:CDS | 40.0% |
| ! | CCAAAAACTTGCTTATGTGG+GGG | + | chr1.2:23583387-23583406 | MS.gene026197:CDS | 40.0% |
| ! | GCCAAAAACTTGCTTATGTG+GGG | + | chr1.2:23583386-23583405 | MS.gene026197:CDS | 40.0% |
| ! | GGAAGTCCATTTTATGCATG+AGG | - | chr1.2:23581156-23581175 | None:intergenic | 40.0% |
| ! | GTGCCAAAAACTTGCTTATG+TGG | + | chr1.2:23583384-23583403 | MS.gene026197:CDS | 40.0% |
| ! | TAACCTTCTCTAAGAGAGGA+AGG | + | chr1.2:23581389-23581408 | MS.gene026197:CDS | 40.0% |
| ! | TGCTGCCAAAAGTTTTCAAC+AGG | + | chr1.2:23583455-23583474 | MS.gene026197:CDS | 40.0% |
| ! | TGTTCTGATGGATGGTATAC+TGG | - | chr1.2:23580980-23580999 | None:intergenic | 40.0% |
| ! | TTATGCATGAGGGGTTTTCT+TGG | - | chr1.2:23581145-23581164 | None:intergenic | 40.0% |
| !! | GCAGAATTAGAGGCACTAAT+TGG | - | chr1.2:23581277-23581296 | None:intergenic | 40.0% |
| !! | TCCTGTAAGGAAGCCATTTT+AGG | + | chr1.2:23581857-23581876 | MS.gene026197:intron | 40.0% |
| !! | TGGTGATTGGTTTCCATTTG+GGG | + | chr1.2:23582927-23582946 | MS.gene026197:CDS | 40.0% |
| AACTATTAGGACTTCAGCCC+TGG | - | chr1.2:23582705-23582724 | None:intergenic | 45.0% | |
| AAGGTGATGACAAACTCTCC+TGG | - | chr1.2:23582358-23582377 | None:intergenic | 45.0% | |
| CAAGACATTAGGAGGGAACA+TGG | - | chr1.2:23582296-23582315 | None:intergenic | 45.0% | |
| CATAACAATCCCTATGGCAG+AGG | - | chr1.2:23583218-23583237 | None:intergenic | 45.0% | |
| CCTCTGTCAACTAAACGCAA+CGG | - | chr1.2:23581834-23581853 | None:intergenic | 45.0% | |
| CTCACTCTCTCTACATGTGT+TGG | + | chr1.2:23582445-23582464 | MS.gene026197:intron | 45.0% | |
| GAGAAGGGAACAGTTGAGTA+TGG | + | chr1.2:23581630-23581649 | MS.gene026197:CDS | 45.0% | |
| GCTCCCAAGGCTTCTAAATA+TGG | + | chr1.2:23581037-23581056 | MS.gene026197:CDS | 45.0% | |
| GGATGGTATACTGGACATTC+TGG | - | chr1.2:23580971-23580990 | None:intergenic | 45.0% | |
| TCTGCAGAAAATTGCTCCCA+AGG | + | chr1.2:23581024-23581043 | MS.gene026197:CDS | 45.0% | |
| ! | ATAAAGGGTTCGCGGTCTTT+TGG | - | chr1.2:23583899-23583918 | None:intergenic | 45.0% |
| ! | CCCCCACATAAGCAAGTTTT+TGG | - | chr1.2:23583390-23583409 | None:intergenic | 45.0% |
| ! | GTGCCATTCTACAGTCTTTC+TGG | + | chr1.2:23583094-23583113 | MS.gene026197:CDS | 45.0% |
| ! | TTTTGCACCGCCTTGTAAAC+CGG | - | chr1.2:23582334-23582353 | None:intergenic | 45.0% |
| !! | ACATGATGTGCCGGTTTACA+AGG | + | chr1.2:23582321-23582340 | MS.gene026197:CDS | 45.0% |
| !! | GCCATTTTAGGAACCTAGTC+TGG | + | chr1.2:23581869-23581888 | MS.gene026197:intron | 45.0% |
| ACTAAACGCAACGGAGACTG+CGG | - | chr1.2:23581825-23581844 | None:intergenic | 50.0% | |
| CCGTTGCGTTTAGTTGACAG+AGG | + | chr1.2:23581831-23581850 | MS.gene026197:CDS | 50.0% | |
| GTTCGACCAATTGTGCCTAG+CGG | - | chr1.2:23582635-23582654 | None:intergenic | 50.0% | |
| TTGGTATGGTGTGCCTAGCT+CGG | + | chr1.2:23582165-23582184 | MS.gene026197:CDS | 50.0% | |
| ! | CTTTTGGCCCTCATCACTGA+TGG | - | chr1.2:23583883-23583902 | None:intergenic | 50.0% |
| !! | GTAAAGGTACTTCAGCCGCT+AGG | + | chr1.2:23582617-23582636 | MS.gene026197:intron | 50.0% |
| !! | TGATGTGCCGGTTTACAAGG+CGG | + | chr1.2:23582324-23582343 | MS.gene026197:CDS | 50.0% |
| AATTGAGAGGCTGCCGAGCT+AGG | - | chr1.2:23582181-23582200 | None:intergenic | 55.0% | |
| CTTCAGCCGCTAGGCACAAT+TGG | + | chr1.2:23582626-23582645 | MS.gene026197:intron | 55.0% | |
| GACATGCAGCCTCTGCCATA+GGG | + | chr1.2:23583206-23583225 | MS.gene026197:CDS | 55.0% | |
| TACAAGGCGGTGCAAAAGCC+AGG | + | chr1.2:23582337-23582356 | MS.gene026197:CDS | 55.0% | |
| TGACATGCAGCCTCTGCCAT+AGG | + | chr1.2:23583205-23583224 | MS.gene026197:CDS | 55.0% | |
| ! | TTGCTTGCTGCAGCCCCAAA+TGG | - | chr1.2:23582943-23582962 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 23580893 | 23584002 | 23580893 | ID=MS.gene026197 |
| chr1.2 | mRNA | 23580893 | 23584002 | 23580893 | ID=MS.gene026197.t1;Parent=MS.gene026197 |
| chr1.2 | exon | 23580893 | 23581058 | 23580893 | ID=MS.gene026197.t1.exon1;Parent=MS.gene026197.t1 |
| chr1.2 | CDS | 23580893 | 23581058 | 23580893 | ID=cds.MS.gene026197.t1;Parent=MS.gene026197.t1 |
| chr1.2 | exon | 23581254 | 23581410 | 23581254 | ID=MS.gene026197.t1.exon2;Parent=MS.gene026197.t1 |
| chr1.2 | CDS | 23581254 | 23581410 | 23581254 | ID=cds.MS.gene026197.t1;Parent=MS.gene026197.t1 |
| chr1.2 | exon | 23581506 | 23581725 | 23581506 | ID=MS.gene026197.t1.exon3;Parent=MS.gene026197.t1 |
| chr1.2 | CDS | 23581506 | 23581725 | 23581506 | ID=cds.MS.gene026197.t1;Parent=MS.gene026197.t1 |
| chr1.2 | exon | 23581807 | 23581860 | 23581807 | ID=MS.gene026197.t1.exon4;Parent=MS.gene026197.t1 |
| chr1.2 | CDS | 23581807 | 23581860 | 23581807 | ID=cds.MS.gene026197.t1;Parent=MS.gene026197.t1 |
| chr1.2 | exon | 23581962 | 23582041 | 23581962 | ID=MS.gene026197.t1.exon5;Parent=MS.gene026197.t1 |
| chr1.2 | CDS | 23581962 | 23582041 | 23581962 | ID=cds.MS.gene026197.t1;Parent=MS.gene026197.t1 |
| chr1.2 | exon | 23582132 | 23582409 | 23582132 | ID=MS.gene026197.t1.exon6;Parent=MS.gene026197.t1 |
| chr1.2 | CDS | 23582132 | 23582409 | 23582132 | ID=cds.MS.gene026197.t1;Parent=MS.gene026197.t1 |
| chr1.2 | exon | 23582893 | 23583291 | 23582893 | ID=MS.gene026197.t1.exon7;Parent=MS.gene026197.t1 |
| chr1.2 | CDS | 23582893 | 23583291 | 23582893 | ID=cds.MS.gene026197.t1;Parent=MS.gene026197.t1 |
| chr1.2 | exon | 23583379 | 23583476 | 23583379 | ID=MS.gene026197.t1.exon8;Parent=MS.gene026197.t1 |
| chr1.2 | CDS | 23583379 | 23583476 | 23583379 | ID=cds.MS.gene026197.t1;Parent=MS.gene026197.t1 |
| chr1.2 | exon | 23583724 | 23584002 | 23583724 | ID=MS.gene026197.t1.exon9;Parent=MS.gene026197.t1 |
| chr1.2 | CDS | 23583724 | 23584002 | 23583724 | ID=cds.MS.gene026197.t1;Parent=MS.gene026197.t1 |
| Gene Sequence |
| Protein sequence |
