AlfalfaGEDB | MS.gene02627

M. sativa cultivar XinJiangDaYe / MS.gene02627

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02627.t1	XP_013461352.1	95.2	600	28	1	1	599	1	600	0.00E+00	1164.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02627.t1	O65530	44.3	314	160	5	282	582	357	668	5.9e-69	263.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02627.t1	A0A072V0S7	95.2	600	28	1	1	599	1	600	0.0e+00	1164.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02627.t1	MTR_3g088855	97.500	600	14	1	1	599	1	600	0.0	1221
MS.gene02627.t1	MTR_8g016120	52.104	309	146	2	275	582	371	678	2.86e-108	342
MS.gene02627.t1	MTR_2g100290	49.679	312	155	2	273	583	371	681	1.08e-107	339
MS.gene02627.t1	MTR_8g101670	48.220	309	158	2	275	582	370	677	6.04e-104	329
MS.gene02627.t1	MTR_8g101670	48.344	302	154	2	275	575	370	670	9.34e-101	321
MS.gene02627.t1	MTR_8g101670	48.185	303	155	2	275	576	358	659	9.36e-101	320
MS.gene02627.t1	MTR_3g011730	33.898	590	350	15	9	579	7	575	7.49e-97	311
MS.gene02627.t1	MTR_3g116450	44.369	293	155	4	297	583	276	566	3.12e-81	268
MS.gene02627.t1	MTR_1g021570	41.520	342	189	5	249	581	201	540	7.02e-80	263
MS.gene02627.t1	MTR_1g021570	43.082	318	171	4	273	581	236	552	8.05e-80	263

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02627.t1	AT3G13690	49.838	309	153	2	275	582	377	684	5.01e-106	337
MS.gene02627.t1	AT3G13690	49.838	309	153	2	275	582	377	684	5.01e-106	337
MS.gene02627.t1	AT3G13690	49.838	309	153	2	275	582	377	684	5.01e-106	337
MS.gene02627.t1	AT5G56790	50.804	311	151	2	273	582	354	663	2.06e-105	332
MS.gene02627.t1	AT1G55200	49.026	308	155	2	276	582	346	652	1.36e-104	330
MS.gene02627.t1	AT1G55200	49.026	308	155	2	276	582	346	652	1.36e-104	330
MS.gene02627.t1	AT1G55200	49.026	308	155	2	276	582	346	652	1.36e-104	330
MS.gene02627.t1	AT1G55200	49.026	308	155	2	276	582	346	652	1.36e-104	330
MS.gene02627.t1	AT1G52290	43.345	293	158	4	295	581	129	419	2.32e-78	257
MS.gene02627.t1	AT5G38560	45.361	291	150	5	297	580	327	615	4.94e-78	261

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Find 117 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATATGGTATTGCACTT+GGG	0.604657	3.3:+74885129	MS.gene02627:CDS
AAAGCCAACTTCTCCATGAT+TGG	0.422720	3.3:-74885902	None:intergenic
AACAAATAGCTGCAAAAGTA+AGG	0.421055	3.3:+74884819	MS.gene02627:CDS
AACAACAATCTCTCCGACAA+TGG	0.480539	3.3:+74885727	MS.gene02627:CDS
AACTTGGACAAAGAATACAC+AGG	0.726749	3.3:-74883989	None:intergenic
AAGAATATAGTGATGCTGTT+GGG	0.403477	3.3:+74884911	MS.gene02627:CDS
AAGATGGTATTGTTTCTGAA+GGG	0.632035	3.3:+74885622	MS.gene02627:CDS
AAGGACAGAGTTATCTATCA+AGG	0.545429	3.3:+74884679	MS.gene02627:CDS
AAGGATAACTTAATAGGTGA+AGG	0.563983	3.3:+74884755	MS.gene02627:CDS
AAGGTTGTGCGATTTCTTGA+GGG	0.499596	3.3:+74886128	MS.gene02627:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATATGGTATTGCACTT+GGG	+	chr3.3:74885129-74885148	MS.gene02627:CDS	30.0%
AACAAATAGCTGCAAAAGTA+AGG	+	chr3.3:74884819-74884838	MS.gene02627:CDS	30.0%
AAGAATATAGTGATGCTGTT+GGG	+	chr3.3:74884911-74884930	MS.gene02627:CDS	30.0%
AAGGATAACTTAATAGGTGA+AGG	+	chr3.3:74884755-74884774	MS.gene02627:CDS	30.0%
ACATTCCTACTTTATTACCA+TGG	-	chr3.3:74885258-74885277	None:intergenic	30.0%
ACATTGCAAAAGAATGAATG+TGG	-	chr3.3:74884260-74884279	None:intergenic	30.0%
ATGGTTATATTACCCATTGT+CGG	-	chr3.3:74885743-74885762	None:intergenic	30.0%
CAATGAGAGAGGTAATTTAT+TGG	+	chr3.3:74886035-74886054	MS.gene02627:intron	30.0%
CACTTATGAACTATACCTTA+TGG	+	chr3.3:74885964-74885983	MS.gene02627:CDS	30.0%
CATTACATGGTATCTTGTTA+AGG	-	chr3.3:74883892-74883911	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	74883048	74886208	74883048	ID=MS.gene02627
chr3.3	mRNA	74883048	74886208	74883048	ID=MS.gene02627.t1;Parent=MS.gene02627
chr3.3	exon	74883048	74883219	74883048	ID=MS.gene02627.t1.exon1;Parent=MS.gene02627.t1
chr3.3	CDS	74883048	74883219	74883048	ID=cds.MS.gene02627.t1;Parent=MS.gene02627.t1
chr3.3	exon	74883438	74883574	74883438	ID=MS.gene02627.t1.exon2;Parent=MS.gene02627.t1
chr3.3	CDS	74883438	74883574	74883438	ID=cds.MS.gene02627.t1;Parent=MS.gene02627.t1
chr3.3	exon	74883676	74883773	74883676	ID=MS.gene02627.t1.exon3;Parent=MS.gene02627.t1
chr3.3	CDS	74883676	74883773	74883676	ID=cds.MS.gene02627.t1;Parent=MS.gene02627.t1
chr3.3	exon	74883862	74884187	74883862	ID=MS.gene02627.t1.exon4;Parent=MS.gene02627.t1
chr3.3	CDS	74883862	74884187	74883862	ID=cds.MS.gene02627.t1;Parent=MS.gene02627.t1
chr3.3	exon	74884558	74885010	74884558	ID=MS.gene02627.t1.exon5;Parent=MS.gene02627.t1
chr3.3	CDS	74884558	74885010	74884558	ID=cds.MS.gene02627.t1;Parent=MS.gene02627.t1
chr3.3	exon	74885099	74885259	74885099	ID=MS.gene02627.t1.exon6;Parent=MS.gene02627.t1
chr3.3	CDS	74885099	74885259	74885099	ID=cds.MS.gene02627.t1;Parent=MS.gene02627.t1
chr3.3	exon	74885431	74885504	74885431	ID=MS.gene02627.t1.exon7;Parent=MS.gene02627.t1
chr3.3	CDS	74885431	74885504	74885431	ID=cds.MS.gene02627.t1;Parent=MS.gene02627.t1
chr3.3	exon	74885599	74885749	74885599	ID=MS.gene02627.t1.exon8;Parent=MS.gene02627.t1
chr3.3	CDS	74885599	74885749	74885599	ID=cds.MS.gene02627.t1;Parent=MS.gene02627.t1
chr3.3	exon	74885896	74886045	74885896	ID=MS.gene02627.t1.exon9;Parent=MS.gene02627.t1
chr3.3	CDS	74885896	74886045	74885896	ID=cds.MS.gene02627.t1;Parent=MS.gene02627.t1
chr3.3	exon	74886131	74886208	74886131	ID=MS.gene02627.t1.exon10;Parent=MS.gene02627.t1
chr3.3	CDS	74886131	74886208	74886131	ID=cds.MS.gene02627.t1;Parent=MS.gene02627.t1

Gene Sequence

>MS.gene02627

ATGGACAGTCCTCCTTCTCCTTCTTGCATCATTGTTGCTTGTGATGCCACAAGGGACCGCAATGAGCACGATATTAAGCTCGTCATCAATCATGTTCGTGACAGGGGTATCATTCTCTCTTCCGGTGATAGATTGCTTGTGCTCTGCATCTTGCATAAGGTGTCCCACCCTAGTAAGTATTATATCATATTATCCCATCTCTTATTACTCACTCCGTTCATTTTTAATTGTTGTTTTAATATGATTTACATGTACCAAGAAAATCAATAAATTTTGTTACTTTTGACGAGACTATTTGTATTTTTATAATTTCTTGATGGTTTTAGCATTCTAAAATTTGTTACTTCAATAATTTTGTTACTTTTCTGTTCCTTCATTTTGGATTAACAGTGGGATACCAGACATTAGCCTGTCCTGAGTCTTTTGCTGGCACCAACTTTCGTGCAATGGAGGAAGAAGTCAGAAAAAAAGTGCATGTATATGCAAATGAGCTTTTATCATGTCTTGAAGATTTTGAAATCCAAGGGGTATATTTTAGCTTCTAAAAAACCTTTGTAATAATGTGTGAGTATTATTTTTAACCTTGAAGTTGAAACTAATATAATAGCTATCCTATGTTCATGTCCAGGTTACCATTGACATTCAAGTCACAGCAGGTTTTCCAATTAGACAGATTATCTTACAAGAGGTTAAAAACTATAATGCATCTTGGATTGTACTTGATAGGTATTAGTAATTATGATTTCATTTTTTTCTTAGTTTCCTTGTTATTTTATCCAATGGTTTTCAATTTTATTGGGCAAAATTTGAACAGATACCTTCGACGCGACATGAGATTCCACCTTAACAAGATACCATGTAATGTAGCATTAGTTAAAGATGACTTGTCTGTGGATATATGGAAATCTCAAAATGCACATGACAAAATTGCAGAAACAAAACCTGTGTATTCTTTGTCCAAGTTTGTATCATTATCAGATTGCCATAGCATGCAAGACATTGAGCAGTCTATTATCTCTTGCAAAAGTTATCCACATTCCTTAGCTTCTTCTGATAGCTCTGGCACTATTAAGAGCTATTCAATGCATTCATATAACAGTTCATTACATTCTAGGTCTTCTTCTAAGCATGAAAGATCAGGTCAGGATCCCTTTCTTAAATTTTTAACTTTCATAAATCATTTTATGTGCACTATATATAATATATTATCCACATTCATTCTTTTGCAATGTTATAAAAAATTTGTGGGAGAAATTTCTAAAATATAAATTTGGAAGGTTATCCCTTTTATATCCGGTTTGCACAAACTGGTGAGAGTGAATCGAACCTAAAACTTAGTGTCTACATACGATTTGGAGTAATTTGTGTGCAACCGTCTTTATCTTCGTATTCTTCCTGTTTAAGTTATTGCAGCCTTCCCAAACACAAAATCTCACAAATTTTAATTATTGTGCACAATGAAAGTTAGTTCATTCATTGTAATGAATGTGGGATCTTATTGTCATTCCAGGTATAAGCATCAAAGGAGAACATAGACATCTCATGACTTCTCAAATTGGCCAAAAGCAAAATCAATGTGTGTTTCTACCAAAATCTTCAGGTGCACCAATTCTATGTGTTGGTTGTGGAATAAGGACAGAGTTATCTATCAAGGAGTCAAATAGGTTCAGCTATTCTGAAATACAGCTTGCAACAAATGATTTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGTCATGTATATAAGGGTGTTCTTAAAGATGGACAACAAATAGCTGCAAAAGTAAGGAAAGAAGAAAGTGCACAAGGGTTTTCTGAATTTCATTCTGAAGTGTATGTCTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGTTGGGGTACTGTTGCAAAGAAAATAAAAATATTCTCATATATGAATATATTTGCAATAAGTCTCTTCATTGGCATTTATTTGGTAAGTGTCTTCTGTTGTTTTATCTTATGCTTCAAGTCTAACAAATATATTTTAAATCCACTTTAATGTTTATTTTATTTTGTTGTAGAAAATAGTGAAGCAGTTCTTGATTGGCCTCAAAGATATGGTATTGCACTTGGGATTGCAAAGGGATTGCGTTTTCTACATGAGGAATGTCGTGGTGGTCCTATTATTCACAGGGACATGAGACCAAGCAATATACTTCTCACTCATGATTTTGTTCCCATGGTAATAAAGTAGGAATGTCTTTGTGTGTGTGTGTTTTATTCTCCTCCAGTTCTATTTATTTCATTCAATGATTTTGTTCTTATTCTTCTTCAAAAAAAAAATAAAAAATAATACCATGTAGTGGGTGAATGGTTAATTAAGTGGTATATGATTTATAAATGCATGGTGCAGCTAGCTGACTTTGGCCTTGCTAAATGGAATACTGGTGATGATTCTCATCAAACAAGGATAATGGGAACATTTGGGTGAGAATTTGTTTGTTCAAGCTTTTCATTATTACCAACAACAACTACAACTGGTCTGATTATAACATTAATGTTGTTGTTATTGTTTGTATAGATATCTTGCTCCTGAGTATGCTGAAGATGGTATTGTTTCTGAAGGGACAGATGTGTATTCTTATGGTGTTACTATGTTACAGTTGATATCAGGACGTCAAGTGGCCAATTTAAATAATCCAGATCAGCAACAACAATCTCTCCGACAATGGGTAATATAACCATCTAATATTTGTAAACACTGTGATTTGATTGGATACGTGTGTAATTAATCTGTATAGATATAGATATTTGCTATTTTATTATGTCTTTCGTATTTATTACGAAACTCTTCAATGGTAATTCAATTTGAATTTAGGCTGAACCAATCATGGAGAAGTTGGCTTTACATGAACTGATTGATCCTCGTTTGGGTGAATCATATGACACTTATGAACTATACCTTATGGCTAAAGCAGCAAATTTCTGTATGCAAAGAAACCCTGAGATGCGTCCATCAATGAGAGAGGTAATTTATTGGTTACTCCTTAATTTTACATCATTCATTTCATTAGATAGTGAAATTTATAATAATTAATAATTTGTTATTTAAGGTTGTGCGATTTCTTGAGGGAGAAAGTTACCATTTCCATACTCTGGAAGATGAATTTGTACCAAACCATAACACTTGA

Protein sequence

>MS.gene02627.t1

MDSPPSPSCIIVACDATRDRNEHDIKLVINHVRDRGIILSSGDRLLVLCILHKVSHPMGYQTLACPESFAGTNFRAMEEEVRKKVHVYANELLSCLEDFEIQGVTIDIQVTAGFPIRQIILQEVKNYNASWIVLDRYLRRDMRFHLNKIPCNVALVKDDLSVDIWKSQNAHDKIAETKPVYSLSKFVSLSDCHSMQDIEQSIISCKSYPHSLASSDSSGTIKSYSMHSYNSSLHSRSSSKHERSGISIKGEHRHLMTSQIGQKQNQCVFLPKSSGAPILCVGCGIRTELSIKESNRFSYSEIQLATNDFSKDNLIGEGGYGHVYKGVLKDGQQIAAKVRKEESAQGFSEFHSEVYVLSFARHKNIVMLLGYCCKENKNILIYEYICNKSLHWHLFENSEAVLDWPQRYGIALGIAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLADFGLAKWNTGDDSHQTRIMGTFGYLAPEYAEDGIVSEGTDVYSYGVTMLQLISGRQVANLNNPDQQQQSLRQWAEPIMEKLALHELIDPRLGESYDTYELYLMAKAANFCMQRNPEMRPSMREVVRFLEGESYHFHTLEDEFVPNHNT