Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026320.t1 | XP_024630392.1 | 87.2 | 321 | 25 | 2 | 1 | 321 | 1 | 305 | 3.70E-154 | 554.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026320.t1 | Q8L3W1 | 25.8 | 333 | 190 | 10 | 15 | 299 | 6 | 329 | 6.9e-16 | 86.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026320.t1 | A0A396JU70 | 87.1 | 319 | 25 | 2 | 1 | 319 | 1 | 303 | 2.3e-153 | 551.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026320.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026320.t1 | MTR_4g119990 | 66.055 | 327 | 98 | 6 | 1 | 318 | 1 | 323 | 8.80e-145 | 413 |
MS.gene026320.t1 | MTR_6g043890 | 64.803 | 304 | 94 | 5 | 1 | 298 | 1 | 297 | 4.16e-131 | 377 |
MS.gene026320.t1 | MTR_1g035440 | 58.436 | 243 | 74 | 3 | 1 | 216 | 1 | 243 | 5.49e-75 | 231 |
MS.gene026320.t1 | MTR_1g108780 | 27.931 | 290 | 192 | 8 | 31 | 311 | 13 | 294 | 3.00e-32 | 125 |
MS.gene026320.t1 | MTR_1g035460 | 30.033 | 303 | 185 | 8 | 31 | 315 | 2 | 295 | 3.23e-32 | 124 |
MS.gene026320.t1 | MTR_3g061370 | 29.126 | 309 | 178 | 10 | 9 | 306 | 3 | 281 | 1.49e-31 | 119 |
MS.gene026320.t1 | MTR_8g103940 | 27.010 | 311 | 211 | 9 | 13 | 315 | 37 | 339 | 7.49e-30 | 119 |
MS.gene026320.t1 | MTR_6g061070 | 26.364 | 330 | 219 | 9 | 7 | 318 | 10 | 333 | 1.09e-29 | 118 |
MS.gene026320.t1 | MTR_5g044670 | 29.882 | 338 | 199 | 13 | 1 | 321 | 1 | 317 | 1.15e-29 | 115 |
MS.gene026320.t1 | MTR_7g050560 | 29.720 | 286 | 175 | 7 | 13 | 292 | 11 | 276 | 1.24e-29 | 115 |
MS.gene026320.t1 | MTR_3g098790 | 29.316 | 307 | 193 | 9 | 9 | 306 | 7 | 298 | 1.43e-29 | 115 |
MS.gene026320.t1 | MTR_7g050720 | 28.981 | 314 | 196 | 9 | 13 | 306 | 8 | 314 | 2.35e-29 | 114 |
MS.gene026320.t1 | MTR_3g061320 | 28.710 | 310 | 177 | 11 | 7 | 306 | 4 | 279 | 3.16e-29 | 113 |
MS.gene026320.t1 | MTR_7g050710 | 28.808 | 302 | 174 | 8 | 13 | 292 | 11 | 293 | 1.53e-28 | 112 |
MS.gene026320.t1 | MTR_1g035570 | 29.492 | 295 | 176 | 8 | 24 | 300 | 14 | 294 | 2.13e-28 | 113 |
MS.gene026320.t1 | MTR_3g061350 | 29.180 | 305 | 175 | 11 | 13 | 306 | 10 | 284 | 5.94e-28 | 110 |
MS.gene026320.t1 | MTR_3g061340 | 29.592 | 294 | 161 | 12 | 15 | 299 | 12 | 268 | 6.32e-27 | 107 |
MS.gene026320.t1 | MTR_1g035640 | 28.671 | 286 | 179 | 9 | 24 | 305 | 14 | 278 | 1.38e-26 | 109 |
MS.gene026320.t1 | MTR_3g061310 | 29.703 | 303 | 177 | 11 | 13 | 306 | 10 | 285 | 2.80e-26 | 105 |
MS.gene026320.t1 | MTR_7g050580 | 29.268 | 287 | 175 | 7 | 13 | 292 | 11 | 276 | 1.22e-25 | 104 |
MS.gene026320.t1 | MTR_3g061330 | 28.235 | 255 | 149 | 8 | 13 | 261 | 10 | 236 | 1.36e-24 | 100 |
MS.gene026320.t1 | MTR_1g033740 | 33.333 | 189 | 91 | 7 | 1 | 167 | 1 | 176 | 1.41e-24 | 99.0 |
MS.gene026320.t1 | MTR_1g035480 | 33.702 | 181 | 94 | 7 | 1 | 167 | 1 | 169 | 3.85e-23 | 94.7 |
MS.gene026320.t1 | MTR_7g050590 | 28.058 | 278 | 171 | 8 | 31 | 292 | 2 | 266 | 6.03e-23 | 97.1 |
MS.gene026320.t1 | MTR_1g035620 | 28.425 | 292 | 164 | 9 | 15 | 294 | 9 | 267 | 1.12e-22 | 97.8 |
MS.gene026320.t1 | MTR_1g035500 | 33.333 | 171 | 91 | 6 | 7 | 165 | 17 | 176 | 6.72e-22 | 91.7 |
MS.gene026320.t1 | MTR_3g061290 | 38.667 | 150 | 80 | 7 | 13 | 153 | 10 | 156 | 8.05e-22 | 91.7 |
MS.gene026320.t1 | MTR_1g050845 | 26.923 | 286 | 164 | 8 | 15 | 294 | 9 | 255 | 8.63e-20 | 90.5 |
MS.gene026320.t1 | MTR_3g005490 | 27.152 | 302 | 148 | 11 | 14 | 306 | 20 | 258 | 1.30e-19 | 87.0 |
MS.gene026320.t1 | MTR_1g035510 | 29.279 | 222 | 121 | 9 | 31 | 238 | 2 | 201 | 3.18e-19 | 85.1 |
MS.gene026320.t1 | MTR_5g070440 | 28.669 | 293 | 164 | 10 | 14 | 306 | 20 | 267 | 1.73e-18 | 84.0 |
MS.gene026320.t1 | MTR_3g005480 | 30.168 | 179 | 104 | 4 | 14 | 175 | 20 | 194 | 1.20e-17 | 81.6 |
MS.gene026320.t1 | MTR_1g021380 | 27.742 | 310 | 183 | 12 | 13 | 292 | 20 | 318 | 3.11e-17 | 81.6 |
MS.gene026320.t1 | MTR_1g021360 | 26.433 | 314 | 158 | 14 | 13 | 292 | 182 | 456 | 1.36e-15 | 77.4 |
MS.gene026320.t1 | MTR_1g035650 | 30.464 | 151 | 98 | 3 | 15 | 165 | 9 | 152 | 2.59e-15 | 73.9 |
MS.gene026320.t1 | MTR_1g035470 | 39.362 | 94 | 53 | 3 | 31 | 124 | 2 | 91 | 4.04e-15 | 71.6 |
MS.gene026320.t1 | MTR_3g005460 | 23.344 | 317 | 148 | 10 | 2 | 304 | 12 | 247 | 7.06e-15 | 75.5 |
MS.gene026320.t1 | MTR_3g005460 | 26.132 | 287 | 164 | 10 | 12 | 292 | 259 | 503 | 2.19e-14 | 73.9 |
MS.gene026320.t1 | MTR_1g021435 | 25.364 | 343 | 173 | 13 | 13 | 292 | 20 | 342 | 1.17e-14 | 74.3 |
MS.gene026320.t1 | MTR_1g021400 | 25.076 | 327 | 182 | 12 | 13 | 292 | 28 | 338 | 1.82e-14 | 73.6 |
MS.gene026320.t1 | MTR_3g005495 | 30.233 | 172 | 106 | 4 | 14 | 174 | 242 | 410 | 5.11e-14 | 72.8 |
MS.gene026320.t1 | MTR_3g005495 | 24.620 | 329 | 201 | 13 | 31 | 319 | 29 | 350 | 3.15e-12 | 67.4 |
MS.gene026320.t1 | MTR_3g005420 | 24.242 | 297 | 172 | 10 | 14 | 306 | 288 | 535 | 1.19e-13 | 72.0 |
MS.gene026320.t1 | MTR_1g021440 | 24.625 | 333 | 190 | 14 | 13 | 292 | 21 | 345 | 1.33e-13 | 71.2 |
MS.gene026320.t1 | MTR_7g050640 | 34.314 | 102 | 66 | 1 | 14 | 115 | 12 | 112 | 8.43e-12 | 61.6 |
MS.gene026320.t1 | MTR_3g061220 | 30.909 | 110 | 60 | 2 | 13 | 122 | 10 | 103 | 1.85e-11 | 60.8 |
MS.gene026320.t1 | MTR_4g068320 | 34.234 | 111 | 70 | 2 | 15 | 123 | 6 | 115 | 8.29e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026320.t1 | AT3G18990 | 25.937 | 347 | 199 | 10 | 15 | 313 | 6 | 342 | 9.31e-21 | 92.0 |
MS.gene026320.t1 | AT3G18990 | 25.826 | 333 | 190 | 9 | 15 | 299 | 6 | 329 | 1.47e-20 | 90.9 |
MS.gene026320.t1 | AT4G33280 | 24.590 | 305 | 180 | 8 | 28 | 306 | 36 | 316 | 4.38e-15 | 75.5 |
MS.gene026320.t1 | AT3G18960 | 35.644 | 101 | 64 | 1 | 15 | 115 | 30 | 129 | 1.65e-14 | 71.6 |
MS.gene026320.t1 | AT3G18960 | 35.644 | 101 | 64 | 1 | 15 | 115 | 30 | 129 | 1.94e-14 | 71.2 |
MS.gene026320.t1 | AT1G49475 | 36.036 | 111 | 69 | 2 | 15 | 125 | 34 | 142 | 5.08e-14 | 70.1 |
MS.gene026320.t1 | AT4G01580 | 33.663 | 101 | 66 | 1 | 15 | 115 | 30 | 129 | 2.85e-13 | 67.8 |
Find 33 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1.1:+19966258 | None:intergenic |
GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1.1:-19966173 | MS.gene026320:CDS |
ACTTGCAAATTATTTGTCTT+TGG | 0.202067 | 1.1:-19967308 | MS.gene026320:CDS |
CTCTTTAATGTGATTGTATT+CGG | 0.254378 | 1.1:-19967244 | MS.gene026320:CDS |
TTTGGAAACCTTAGAGTAAC+TGG | 0.256715 | 1.1:+19967403 | None:intergenic |
CTTCATCATCACGCGGTAAA+AGG | 0.264439 | 1.1:-19967132 | MS.gene026320:CDS |
CTTGCAAATTATTTGTCTTT+GGG | 0.314706 | 1.1:-19967307 | MS.gene026320:CDS |
AAGTAGCTGTAATGATATTA+AGG | 0.342032 | 1.1:-19966876 | MS.gene026320:CDS |
ATATAATTACCTTCAAAATA+AGG | 0.343429 | 1.1:+19966062 | None:intergenic |
ATCAACTCAAATGAACAAAA+AGG | 0.361386 | 1.1:-19967064 | MS.gene026320:CDS |
TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1.1:-19967411 | MS.gene026320:CDS |
ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1.1:+19966177 | None:intergenic |
GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1.1:+19966107 | None:intergenic |
TTTCTCTTTGGAAAAGGACT+TGG | 0.399841 | 1.1:-19966090 | MS.gene026320:CDS |
TCTTCACTAGTTTCTCTTGA+AGG | 0.416839 | 1.1:+19967196 | None:intergenic |
ATACATTGATAGAGATCTCT+TGG | 0.468940 | 1.1:-19966771 | MS.gene026320:intron |
CACACTTTCATAGACGGTGC+TGG | 0.484435 | 1.1:+19967100 | None:intergenic |
CTTCACTAGTTTCTCTTGAA+GGG | 0.485568 | 1.1:+19967197 | None:intergenic |
TGTTTCTTGACAAATTCATT+CGG | 0.489392 | 1.1:+19966314 | None:intergenic |
TCTAAGGTTTCCAAACATGA+TGG | 0.492653 | 1.1:-19967395 | MS.gene026320:CDS |
CAAGAAACATATGCACATGA+TGG | 0.529994 | 1.1:-19966300 | MS.gene026320:CDS |
TTCTTACACACTTTCATAGA+CGG | 0.530584 | 1.1:+19967094 | None:intergenic |
TTTGTGAAAAGGTATTGGAA+AGG | 0.563752 | 1.1:-19967436 | MS.gene026320:CDS |
AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1.1:-19966208 | MS.gene026320:CDS |
AAACATATGCACATGATGGA+AGG | 0.582307 | 1.1:-19966296 | MS.gene026320:CDS |
AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1.1:-19966212 | MS.gene026320:CDS |
GAACATGGTCATCAGAGTAA+TGG | 0.594006 | 1.1:-19967944 | MS.gene026320:CDS |
ACCATGTTCTTGAGAAGACA+TGG | 0.602247 | 1.1:+19967958 | None:intergenic |
TTGGAAACCTTAGAGTAACT+GGG | 0.606122 | 1.1:+19967404 | None:intergenic |
GTGATTGTATTCGGTAAATG+CGG | 0.620340 | 1.1:-19967235 | MS.gene026320:CDS |
AAGGATCTAAGCATGAGAAG+AGG | 0.639289 | 1.1:-19967045 | MS.gene026320:CDS |
ACCATGTCTTCTCAAGAACA+TGG | 0.657917 | 1.1:-19967959 | MS.gene026320:CDS |
GAGAATCCTTCATCATCACG+CGG | 0.748401 | 1.1:-19967139 | MS.gene026320:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATGATTTATGAAAAATTTA+TGG | - | chr1.1:19967891-19967910 | MS.gene026320:intron | 10.0% |
!! | AGAAAAATAATTTCTTCATT+AGG | + | chr1.1:19966192-19966211 | None:intergenic | 15.0% |
!! | ATATAATTACCTTCAAAATA+AGG | + | chr1.1:19967859-19967878 | None:intergenic | 15.0% |
!! | GAAAAATAATTTCTTCATTA+GGG | + | chr1.1:19966191-19966210 | None:intergenic | 15.0% |
!! | TAAATATACATTGCAAAATT+TGG | - | chr1.1:19966092-19966111 | MS.gene026320:CDS | 15.0% |
!!! | CTATTTTTGTCTTATTTTAT+AGG | - | chr1.1:19966973-19966992 | MS.gene026320:intron | 15.0% |
!!! | TGAAATTATTAATCTAAAAC+AGG | - | chr1.1:19967576-19967595 | MS.gene026320:intron | 15.0% |
!! | AGTCTCATTATAGTAAAATT+TGG | + | chr1.1:19967352-19967371 | None:intergenic | 20.0% |
!! | ATTTATCTTTGTCAACAAAA+AGG | + | chr1.1:19967663-19967682 | None:intergenic | 20.0% |
!! | ATTTCAAATTATTCTCTTCA+CGG | + | chr1.1:19967744-19967763 | None:intergenic | 20.0% |
!! | TTACATATTGTGAAAAATCA+AGG | + | chr1.1:19966075-19966094 | None:intergenic | 20.0% |
!! | TTCAAGATAAAGTAGTTAAA+TGG | + | chr1.1:19967560-19967579 | None:intergenic | 20.0% |
!! | TTTATCTTTGTCAACAAAAA+GGG | + | chr1.1:19967662-19967681 | None:intergenic | 20.0% |
!!! | GAAGAGAATAATTTGAAATT+TGG | - | chr1.1:19967745-19967764 | MS.gene026320:intron | 20.0% |
!!! | TGATCACTTTTATTTTTGAA+AGG | - | chr1.1:19967187-19967206 | MS.gene026320:CDS | 20.0% |
!!! | TTTTTGTTGACAAAGATAAA+TGG | - | chr1.1:19967662-19967681 | MS.gene026320:intron | 20.0% |
! | AAGTAGCTGTAATGATATTA+AGG | - | chr1.1:19967042-19967061 | MS.gene026320:CDS | 25.0% |
! | ACTTGCAAATTATTTGTCTT+TGG | - | chr1.1:19966610-19966629 | MS.gene026320:intron | 25.0% |
! | ATCAACTCAAATGAACAAAA+AGG | - | chr1.1:19966854-19966873 | MS.gene026320:CDS | 25.0% |
! | CAAAAAATTTCTTCACTTTC+TGG | + | chr1.1:19967087-19967106 | None:intergenic | 25.0% |
! | CAATATAGTAATTCATGTGT+TGG | - | chr1.1:19967935-19967954 | MS.gene026320:CDS | 25.0% |
! | CTATTCTTTGATGAGATTAA+TGG | - | chr1.1:19967293-19967312 | MS.gene026320:CDS | 25.0% |
! | CTCTTTAATGTGATTGTATT+CGG | - | chr1.1:19966674-19966693 | MS.gene026320:intron | 25.0% |
! | CTTGCAAATTATTTGTCTTT+GGG | - | chr1.1:19966611-19966630 | MS.gene026320:intron | 25.0% |
! | GAGAAAATAACAACTTGAAA+TGG | + | chr1.1:19967814-19967833 | None:intergenic | 25.0% |
! | TGTTTCTTGACAAATTCATT+CGG | + | chr1.1:19967607-19967626 | None:intergenic | 25.0% |
!! | AAATGTATGTGTGTATTGAT+AGG | - | chr1.1:19967522-19967541 | MS.gene026320:intron | 25.0% |
!! | AATGAAGTTATGTTTTGCAA+TGG | - | chr1.1:19966578-19966597 | MS.gene026320:intron | 25.0% |
!!! | GAATTCTCAATTTTTTTAGC+AGG | - | chr1.1:19967019-19967038 | MS.gene026320:CDS | 25.0% |
!!! | GATGGAAAAGAAAGTTTTTT+GGG | - | chr1.1:19966541-19966560 | MS.gene026320:intron | 25.0% |
!!! | TCAAGTTGTTATTTTCTCTT+TGG | - | chr1.1:19967816-19967835 | MS.gene026320:intron | 25.0% |
!!! | TGATGGAAAAGAAAGTTTTT+TGG | - | chr1.1:19966540-19966559 | MS.gene026320:intron | 25.0% |
!!! | TGTTATTTTCTCTTTGGAAA+AGG | - | chr1.1:19967822-19967841 | MS.gene026320:intron | 25.0% |
AATAGTGTTTGTTCGAATGT+AGG | - | chr1.1:19966284-19966303 | MS.gene026320:CDS | 30.0% | |
ATACATTGATAGAGATCTCT+TGG | - | chr1.1:19967147-19967166 | MS.gene026320:CDS | 30.0% | |
CCAATCACAATCTATTATGT+AGG | + | chr1.1:19967409-19967428 | None:intergenic | 30.0% | |
CCTACATAATAGATTGTGAT+TGG | - | chr1.1:19967406-19967425 | MS.gene026320:CDS | 30.0% | |
GACGAATAACCTTAAAAAAG+TGG | + | chr1.1:19966003-19966022 | None:intergenic | 30.0% | |
GCTCAAAAACATGAAATCTA+GGG | + | chr1.1:19966904-19966923 | None:intergenic | 30.0% | |
TGCTCAAAAACATGAAATCT+AGG | + | chr1.1:19966905-19966924 | None:intergenic | 30.0% | |
TTCTTACACACTTTCATAGA+CGG | + | chr1.1:19966827-19966846 | None:intergenic | 30.0% | |
! | AAGTTATGTTTTGCAATGGT+TGG | - | chr1.1:19966582-19966601 | MS.gene026320:intron | 30.0% |
! | ACTTTCTTTTCCATCATGTT+TGG | + | chr1.1:19966536-19966555 | None:intergenic | 30.0% |
! | ATACCTTTTCACAAAAGTGA+TGG | + | chr1.1:19966477-19966496 | None:intergenic | 30.0% |
! | TACCAGTTTTTCTTCTTGAA+GGG | + | chr1.1:19966032-19966051 | None:intergenic | 30.0% |
! | TACCTTTTCACAAAAGTGAT+GGG | + | chr1.1:19966476-19966495 | None:intergenic | 30.0% |
! | TTACCAGTTTTTCTTCTTGA+AGG | + | chr1.1:19966033-19966052 | None:intergenic | 30.0% |
! | TTTGGGTGAATCACAATTTT+TGG | - | chr1.1:19966628-19966647 | MS.gene026320:intron | 30.0% |
!! | TCACTTTTGTGAAAAGGTAT+TGG | - | chr1.1:19966477-19966496 | MS.gene026320:intron | 30.0% |
!! | TGTGTTTTTGTGCTAAACAA+AGG | - | chr1.1:19967775-19967794 | MS.gene026320:intron | 30.0% |
!! | TTTGTGAAAAGGTATTGGAA+AGG | - | chr1.1:19966482-19966501 | MS.gene026320:intron | 30.0% |
!!! | GCGTTGCTACTAATTTTTTT+TGG | - | chr1.1:19966995-19967014 | MS.gene026320:intron | 30.0% |
!!! | TAATGGTGTCCACTTTTTTA+AGG | - | chr1.1:19965991-19966010 | MS.gene026320:intron | 30.0% |
!!! | TTGGAAACTCCTTATTTTGA+AGG | - | chr1.1:19967847-19967866 | MS.gene026320:intron | 30.0% |
AAACAATCTGCACTAACTTG+TGG | - | chr1.1:19967706-19967725 | MS.gene026320:intron | 35.0% | |
CAAGAAACATATGCACATGA+TGG | - | chr1.1:19967618-19967637 | MS.gene026320:intron | 35.0% | |
GTGATTGTATTCGGTAAATG+CGG | - | chr1.1:19966683-19966702 | MS.gene026320:intron | 35.0% | |
TAACAAACCCAGTTACTCTA+AGG | - | chr1.1:19966507-19966526 | MS.gene026320:intron | 35.0% | |
TACCCTTCAAGAAGAAAAAC+TGG | - | chr1.1:19966027-19966046 | MS.gene026320:intron | 35.0% | |
TTGGAAACCTTAGAGTAACT+GGG | + | chr1.1:19966517-19966536 | None:intergenic | 35.0% | |
TTTGGAAACCTTAGAGTAAC+TGG | + | chr1.1:19966518-19966537 | None:intergenic | 35.0% | |
! | AAACATATGCACATGATGGA+AGG | - | chr1.1:19967622-19967641 | MS.gene026320:intron | 35.0% |
! | CTTCACTAGTTTCTCTTGAA+GGG | + | chr1.1:19966724-19966743 | None:intergenic | 35.0% |
! | TCTAAGGTTTCCAAACATGA+TGG | - | chr1.1:19966523-19966542 | MS.gene026320:intron | 35.0% |
! | TCTTCACTAGTTTCTCTTGA+AGG | + | chr1.1:19966725-19966744 | None:intergenic | 35.0% |
! | TTTCTCTTTGGAAAAGGACT+TGG | - | chr1.1:19967828-19967847 | MS.gene026320:intron | 35.0% |
!! | GTTTTTGAGCATGTGAACAA+TGG | - | chr1.1:19966914-19966933 | MS.gene026320:intron | 35.0% |
!! | TACCCATCACTTTTGTGAAA+AGG | - | chr1.1:19966471-19966490 | MS.gene026320:intron | 35.0% |
AAGGATCTAAGCATGAGAAG+AGG | - | chr1.1:19966873-19966892 | MS.gene026320:CDS | 40.0% | |
AGTGTTTGTTCGAATGTAGG+TGG | - | chr1.1:19966287-19966306 | MS.gene026320:CDS | 40.0% | |
GAACATGGTCATCAGAGTAA+TGG | - | chr1.1:19965974-19965993 | MS.gene026320:intron | 40.0% | |
TAATCATCCGTAGCCTTTGT+TGG | - | chr1.1:19966159-19966178 | MS.gene026320:CDS | 40.0% | |
TCATGTGTTGGACTATTGCA+GGG | - | chr1.1:19967947-19967966 | MS.gene026320:CDS | 40.0% | |
TTCATGTGTTGGACTATTGC+AGG | - | chr1.1:19967946-19967965 | MS.gene026320:CDS | 40.0% | |
TTGAGCATGTGAACAATGGT+TGG | - | chr1.1:19966918-19966937 | MS.gene026320:intron | 40.0% | |
! | AATCTGCACTAACTTGTGGT+TGG | - | chr1.1:19967710-19967729 | MS.gene026320:intron | 40.0% |
ATTAGGGCTGCATCCAACAA+AGG | + | chr1.1:19966175-19966194 | None:intergenic | 45.0% | |
CTTCATCATCACGCGGTAAA+AGG | - | chr1.1:19966786-19966805 | MS.gene026320:CDS | 45.0% | |
GAGAATCCTTCATCATCACG+CGG | - | chr1.1:19966779-19966798 | MS.gene026320:CDS | 45.0% | |
!! | CTTTTACCGCGTGATGATGA+AGG | + | chr1.1:19966788-19966807 | None:intergenic | 45.0% |
CACACTTTCATAGACGGTGC+TGG | + | chr1.1:19966821-19966840 | None:intergenic | 50.0% | |
GCTGCATCCAACAAAGGCTA+CGG | + | chr1.1:19966169-19966188 | None:intergenic | 50.0% | |
GTGTTGGACTATTGCAGGGT+TGG | - | chr1.1:19967951-19967970 | MS.gene026320:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 19965962 | 19967978 | 19965962 | ID=MS.gene026320 |
chr1.1 | mRNA | 19965962 | 19967978 | 19965962 | ID=MS.gene026320.t1;Parent=MS.gene026320 |
chr1.1 | exon | 19967892 | 19967978 | 19967892 | ID=MS.gene026320.t1.exon1;Parent=MS.gene026320.t1 |
chr1.1 | CDS | 19967892 | 19967978 | 19967892 | ID=cds.MS.gene026320.t1;Parent=MS.gene026320.t1 |
chr1.1 | exon | 19967005 | 19967473 | 19967005 | ID=MS.gene026320.t1.exon2;Parent=MS.gene026320.t1 |
chr1.1 | CDS | 19967005 | 19967473 | 19967005 | ID=cds.MS.gene026320.t1;Parent=MS.gene026320.t1 |
chr1.1 | exon | 19966772 | 19966899 | 19966772 | ID=MS.gene026320.t1.exon3;Parent=MS.gene026320.t1 |
chr1.1 | CDS | 19966772 | 19966899 | 19966772 | ID=cds.MS.gene026320.t1;Parent=MS.gene026320.t1 |
chr1.1 | exon | 19966072 | 19966342 | 19966072 | ID=MS.gene026320.t1.exon4;Parent=MS.gene026320.t1 |
chr1.1 | CDS | 19966072 | 19966342 | 19966072 | ID=cds.MS.gene026320.t1;Parent=MS.gene026320.t1 |
chr1.1 | exon | 19965962 | 19965972 | 19965962 | ID=MS.gene026320.t1.exon5;Parent=MS.gene026320.t1 |
chr1.1 | CDS | 19965962 | 19965972 | 19965962 | ID=cds.MS.gene026320.t1;Parent=MS.gene026320.t1 |
Gene Sequence |
Protein sequence |