Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026324.t1 | RHN78223.1 | 73.9 | 337 | 61 | 3 | 71 | 396 | 13 | 333 | 9.10E-118 | 433.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026324.t1 | Q8L3W1 | 23.8 | 319 | 200 | 9 | 78 | 356 | 21 | 336 | 3.7e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026324.t1 | A0A396JPN4 | 73.9 | 337 | 61 | 3 | 71 | 396 | 13 | 333 | 6.5e-118 | 433.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene026324.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026324.t1 | MTR_1g035570 | 70.091 | 331 | 71 | 4 | 71 | 394 | 13 | 322 | 4.07e-146 | 421 |
| MS.gene026324.t1 | MTR_1g035640 | 50.585 | 342 | 118 | 4 | 71 | 395 | 13 | 320 | 5.81e-105 | 318 |
| MS.gene026324.t1 | MTR_1g035640 | 58.182 | 55 | 23 | 0 | 1 | 55 | 243 | 297 | 4.04e-12 | 67.8 |
| MS.gene026324.t1 | MTR_1g035620 | 45.062 | 324 | 126 | 8 | 78 | 391 | 24 | 305 | 2.06e-80 | 253 |
| MS.gene026324.t1 | MTR_1g035490 | 65.753 | 219 | 51 | 5 | 189 | 394 | 20 | 227 | 7.75e-77 | 241 |
| MS.gene026324.t1 | MTR_1g050845 | 44.615 | 325 | 114 | 8 | 78 | 391 | 24 | 293 | 2.82e-73 | 244 |
| MS.gene026324.t1 | MTR_6g061070 | 35.000 | 300 | 172 | 7 | 79 | 361 | 34 | 327 | 7.00e-49 | 172 |
| MS.gene026324.t1 | MTR_6g061070 | 75.510 | 49 | 12 | 0 | 1 | 49 | 285 | 333 | 7.24e-18 | 85.5 |
| MS.gene026324.t1 | MTR_1g035650 | 43.750 | 208 | 80 | 4 | 78 | 276 | 24 | 203 | 2.71e-45 | 155 |
| MS.gene026324.t1 | MTR_7g050710 | 31.922 | 307 | 174 | 10 | 78 | 366 | 28 | 317 | 3.30e-34 | 129 |
| MS.gene026324.t1 | MTR_5g044670 | 30.169 | 295 | 174 | 7 | 79 | 360 | 32 | 307 | 2.78e-33 | 127 |
| MS.gene026324.t1 | MTR_3g098790 | 31.741 | 293 | 177 | 8 | 72 | 356 | 22 | 299 | 1.07e-32 | 125 |
| MS.gene026324.t1 | MTR_7g050590 | 31.959 | 291 | 173 | 9 | 79 | 356 | 2 | 280 | 2.80e-31 | 121 |
| MS.gene026324.t1 | MTR_7g050560 | 32.069 | 290 | 163 | 10 | 76 | 356 | 26 | 290 | 4.25e-31 | 120 |
| MS.gene026324.t1 | MTR_1g035510 | 33.333 | 225 | 134 | 8 | 79 | 299 | 2 | 214 | 6.73e-30 | 115 |
| MS.gene026324.t1 | MTR_1g108780 | 29.836 | 305 | 170 | 11 | 78 | 360 | 12 | 294 | 1.26e-28 | 117 |
| MS.gene026324.t1 | MTR_7g050720 | 31.293 | 294 | 182 | 12 | 79 | 356 | 26 | 315 | 7.89e-28 | 112 |
| MS.gene026324.t1 | MTR_7g050580 | 33.218 | 289 | 161 | 10 | 76 | 356 | 26 | 290 | 1.27e-27 | 111 |
| MS.gene026324.t1 | MTR_1g035480 | 45.299 | 117 | 61 | 2 | 69 | 185 | 23 | 136 | 2.85e-26 | 104 |
| MS.gene026324.t1 | MTR_1g033740 | 41.129 | 124 | 68 | 3 | 67 | 188 | 24 | 144 | 4.30e-26 | 104 |
| MS.gene026324.t1 | MTR_3g061310 | 27.143 | 280 | 181 | 8 | 78 | 354 | 25 | 284 | 2.52e-25 | 104 |
| MS.gene026324.t1 | MTR_8g103940 | 29.966 | 297 | 179 | 8 | 78 | 360 | 54 | 335 | 3.37e-25 | 107 |
| MS.gene026324.t1 | MTR_1g035460 | 25.157 | 318 | 205 | 8 | 79 | 374 | 2 | 308 | 2.38e-24 | 103 |
| MS.gene026324.t1 | MTR_3g061340 | 27.113 | 284 | 165 | 12 | 78 | 354 | 25 | 273 | 1.48e-23 | 99.4 |
| MS.gene026324.t1 | MTR_3g061350 | 25.430 | 291 | 171 | 9 | 78 | 354 | 25 | 283 | 2.91e-23 | 99.0 |
| MS.gene026324.t1 | MTR_1g035470 | 40.909 | 110 | 62 | 2 | 79 | 188 | 2 | 108 | 1.13e-22 | 93.2 |
| MS.gene026324.t1 | MTR_3g061320 | 24.752 | 303 | 191 | 8 | 55 | 354 | 10 | 278 | 2.40e-22 | 96.3 |
| MS.gene026324.t1 | MTR_1g035500 | 43.220 | 118 | 63 | 3 | 67 | 184 | 30 | 143 | 2.58e-22 | 93.6 |
| MS.gene026324.t1 | MTR_4g119990 | 26.667 | 300 | 194 | 8 | 70 | 354 | 22 | 310 | 4.18e-22 | 97.1 |
| MS.gene026324.t1 | MTR_1g035520 | 25.753 | 365 | 227 | 13 | 20 | 354 | 32 | 382 | 5.15e-22 | 97.1 |
| MS.gene026324.t1 | MTR_3g061370 | 24.658 | 292 | 176 | 8 | 77 | 354 | 19 | 280 | 1.01e-21 | 94.4 |
| MS.gene026324.t1 | MTR_6g043890 | 25.763 | 295 | 192 | 8 | 63 | 342 | 9 | 291 | 1.93e-20 | 92.0 |
| MS.gene026324.t1 | MTR_1g035540 | 66.102 | 59 | 19 | 1 | 3 | 60 | 31 | 89 | 9.27e-20 | 85.1 |
| MS.gene026324.t1 | MTR_3g061330 | 31.646 | 158 | 98 | 5 | 77 | 226 | 22 | 177 | 5.31e-17 | 80.5 |
| MS.gene026324.t1 | MTR_3g061290 | 34.884 | 129 | 72 | 3 | 55 | 181 | 10 | 128 | 6.56e-17 | 79.0 |
| MS.gene026324.t1 | MTR_1g034210 | 25.072 | 347 | 193 | 12 | 78 | 361 | 22 | 364 | 6.34e-14 | 72.8 |
| MS.gene026324.t1 | MTR_1g021270 | 23.497 | 366 | 220 | 13 | 78 | 394 | 30 | 384 | 1.94e-13 | 72.4 |
| MS.gene026324.t1 | MTR_7g050640 | 42.529 | 87 | 46 | 2 | 79 | 161 | 29 | 115 | 1.03e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026324.t1 | AT3G18990 | 25.076 | 327 | 196 | 9 | 76 | 359 | 19 | 339 | 3.67e-18 | 85.9 |
| MS.gene026324.t1 | AT3G18990 | 25.231 | 325 | 194 | 9 | 76 | 357 | 19 | 337 | 7.87e-18 | 84.3 |
Find 67 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCAAAGCCTTTCAAATA+TGG | 0.180110 | 1.1:+20028454 | MS.gene026324:CDS |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1.1:-20028319 | None:intergenic |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1.1:-20028560 | None:intergenic |
| CATTAACAGCTTCAGATCTT+AGG | 0.270045 | 1.1:-20029163 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1.1:+20028323 | MS.gene026324:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1.1:+20028410 | MS.gene026324:CDS |
| TTAATGGAACCACAACAATA+AGG | 0.298328 | 1.1:+20029356 | MS.gene026324:CDS |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1.1:+20028481 | MS.gene026324:CDS |
| TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 1.1:-20028361 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1.1:-20029526 | None:intergenic |
| AGGCATGGTTCCTTTGTAGC+TGG | 0.320210 | 1.1:-20027049 | None:intergenic |
| AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 1.1:-20029574 | None:intergenic |
| AGAGCAATACCCTTTACTTT+TGG | 0.331691 | 1.1:-20029765 | None:intergenic |
| CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 1.1:-20029568 | None:intergenic |
| CTGGTCCTTTGAGTTTGCTT+TGG | 0.341746 | 1.1:-20028745 | None:intergenic |
| TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 1.1:-20028360 | None:intergenic |
| TGTTCTCTTGAAAACTCATT+TGG | 0.346666 | 1.1:-20029322 | None:intergenic |
| TACATACATCACCAGCTTGC+AGG | 0.371210 | 1.1:-20026976 | None:intergenic |
| ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 1.1:-20028683 | None:intergenic |
| TAATGGAACCACAACAATAA+GGG | 0.391268 | 1.1:+20029357 | MS.gene026324:CDS |
| CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 1.1:-20028369 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1.1:-20028536 | None:intergenic |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1.1:+20029446 | MS.gene026324:CDS |
| AGCTACAAAGGAACCATGCC+TGG | 0.433161 | 1.1:+20027051 | MS.gene026324:CDS |
| ATAGTAATTGTGAATGAAAG+TGG | 0.438268 | 1.1:-20027022 | None:intergenic |
| CAAACTCAAAGGACCAGAAA+TGG | 0.451853 | 1.1:+20028751 | MS.gene026324:CDS |
| GGCATGGTTCCTTTGTAGCT+GGG | 0.456521 | 1.1:-20027048 | None:intergenic |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1.1:+20028484 | MS.gene026324:CDS |
| AGGAGCCATCCAAAAGTAAA+GGG | 0.477165 | 1.1:+20029756 | MS.gene026324:CDS |
| TAGGAGCCATCCAAAAGTAA+AGG | 0.478853 | 1.1:+20029755 | MS.gene026324:CDS |
| ATTACCAACCCTTATTGTTG+TGG | 0.480026 | 1.1:-20029365 | None:intergenic |
| CAAAGTGGCCATGGTAAAGA+AGG | 0.488314 | 1.1:+20029130 | MS.gene026324:CDS |
| TGACATTATAACTTCAAAAG+AGG | 0.495408 | 1.1:-20029192 | None:intergenic |
| CCATGCCTGGAGCAGTTTCA+AGG | 0.511461 | 1.1:+20027064 | MS.gene026324:CDS |
| AAATACCTTGAAACTGCTCC+AGG | 0.519839 | 1.1:-20027069 | None:intergenic |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1.1:-20028463 | None:intergenic |
| TGGTTGGAAGTCGTTTGTGC+AGG | 0.521812 | 1.1:+20026946 | MS.gene026324:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 1.1:+20028769 | MS.gene026324:CDS |
| GACATTATAACTTCAAAAGA+GGG | 0.525934 | 1.1:-20029191 | None:intergenic |
| AAGACATTGGAGGAACATCT+AGG | 0.526190 | 1.1:+20029736 | MS.gene026324:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1.1:+20028562 | MS.gene026324:CDS |
| GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 1.1:+20028673 | MS.gene026324:CDS |
| CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 1.1:+20029568 | MS.gene026324:CDS |
| GTTGTAAAGAAGCAAGACAT+TGG | 0.558494 | 1.1:+20029723 | MS.gene026324:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.558627 | 1.1:+20029371 | MS.gene026324:CDS |
| AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 1.1:+20028657 | MS.gene026324:CDS |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 1.1:+20029121 | MS.gene026324:intron |
| CCTTGAAACTGCTCCAGGCA+TGG | 0.579128 | 1.1:-20027064 | None:intergenic |
| AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 1.1:+20029434 | MS.gene026324:CDS |
| GTAAATTTGAGATGATTCAA+CGG | 0.588165 | 1.1:+20029500 | MS.gene026324:CDS |
| GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 1.1:+20028583 | MS.gene026324:CDS |
| ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 1.1:+20028364 | MS.gene026324:CDS |
| GAGTAATGAGAGTTCAGATG+AGG | 0.591415 | 1.1:+20028714 | MS.gene026324:CDS |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1.1:+20028312 | MS.gene026324:intron |
| GTAAAGAAGCAAGACATTGG+AGG | 0.602206 | 1.1:+20029726 | MS.gene026324:CDS |
| ACTTACAAAGAAATAGCCAT+TGG | 0.605595 | 1.1:-20029225 | None:intergenic |
| ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 1.1:+20029209 | MS.gene026324:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1.1:+20029378 | MS.gene026324:CDS |
| TACTATTATCCCAGCTACAA+AGG | 0.605894 | 1.1:+20027039 | MS.gene026324:CDS |
| GGAACCACAACAATAAGGGT+TGG | 0.608476 | 1.1:+20029361 | MS.gene026324:CDS |
| CAGGAACATAACCTGCAAGC+TGG | 0.617118 | 1.1:+20026965 | MS.gene026324:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1.1:+20028328 | MS.gene026324:CDS |
| TGTATGCAGTGTGAGACTGT+TGG | 0.623534 | 1.1:+20027813 | MS.gene026324:intron |
| TACAAGCACAAACAGAACAA+TGG | 0.627727 | 1.1:+20027338 | MS.gene026324:CDS |
| AAATACCAAAGCAAACTCAA+AGG | 0.654830 | 1.1:+20028740 | MS.gene026324:CDS |
| GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 1.1:+20029392 | MS.gene026324:CDS |
| CTTGGCAGGTAGTAACAAAG+TGG | 0.671173 | 1.1:+20029115 | MS.gene026324:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCAAATACTTATATATTA+TGG | - | chr1.1:20027229-20027248 | None:intergenic | 15.0% |
| !!! | AAATGTGATTTTTTTTTTGT+AGG | + | chr1.1:20028977-20028996 | MS.gene026324:intron | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | - | chr1.1:20028539-20028558 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1.1:20028425-20028444 | MS.gene026324:CDS | 15.0% |
| !!! | ATTTAATCAATTTTGTTAGT+TGG | + | chr1.1:20027505-20027524 | MS.gene026324:intron | 15.0% |
| !!! | ATTTTCTATCTAATTTTTTC+TGG | - | chr1.1:20027942-20027961 | None:intergenic | 15.0% |
| !!! | TAAAGATATTTTTTGTAGTA+TGG | - | chr1.1:20028019-20028038 | None:intergenic | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1.1:20028426-20028445 | MS.gene026324:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1.1:20028511-20028530 | MS.gene026324:CDS | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1.1:20028387-20028406 | MS.gene026324:CDS | 15.0% |
| !!! | TTATTTTAAGAGTTATTGAA+TGG | + | chr1.1:20028871-20028890 | MS.gene026324:intron | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1.1:20029593-20029612 | MS.gene026324:intron | 15.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1.1:20029529-20029548 | None:intergenic | 20.0% |
| !! | ATTATGCATGTATATATTAC+AGG | + | chr1.1:20027290-20027309 | MS.gene026324:intron | 20.0% |
| !! | CACCATAATATATAAGTATT+TGG | + | chr1.1:20027224-20027243 | MS.gene026324:intron | 20.0% |
| !! | TTATGCATGTATATATTACA+GGG | + | chr1.1:20027291-20027310 | MS.gene026324:intron | 20.0% |
| !!! | AATATATTCCAGATTTTCAT+AGG | + | chr1.1:20028147-20028166 | MS.gene026324:intron | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1.1:20028386-20028405 | MS.gene026324:CDS | 20.0% |
| !!! | TCTTTCGTTATTATTGTTTT+TGG | + | chr1.1:20027091-20027110 | MS.gene026324:intron | 20.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | + | chr1.1:20029097-20029116 | MS.gene026324:intron | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | - | chr1.1:20028466-20028485 | None:intergenic | 25.0% |
| ! | ACCCAGAAAAAATATTGTAT+GGG | + | chr1.1:20029424-20029443 | MS.gene026324:CDS | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | + | chr1.1:20028323-20028342 | MS.gene026324:CDS | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | - | chr1.1:20027025-20027044 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAGTTTCCTAA+CGG | + | chr1.1:20028364-20028383 | MS.gene026324:CDS | 25.0% |
| ! | ATGACAAGGTTATAAAAAAG+GGG | + | chr1.1:20029683-20029702 | MS.gene026324:intron | 25.0% |
| ! | CATGACAAGGTTATAAAAAA+GGG | + | chr1.1:20029682-20029701 | MS.gene026324:intron | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | + | chr1.1:20028481-20028500 | MS.gene026324:CDS | 25.0% |
| ! | GACATTATAACTTCAAAAGA+GGG | - | chr1.1:20029194-20029213 | None:intergenic | 25.0% |
| ! | GCATACATTAAAAAACACAA+TGG | - | chr1.1:20027800-20027819 | None:intergenic | 25.0% |
| ! | GTAAAAATGGCAGATATTAA+GGG | + | chr1.1:20027768-20027787 | MS.gene026324:intron | 25.0% |
| ! | TACAGTACCTTATGTAAAAA+TGG | + | chr1.1:20027755-20027774 | MS.gene026324:intron | 25.0% |
| ! | TACCCAGAAAAAATATTGTA+TGG | + | chr1.1:20029423-20029442 | MS.gene026324:CDS | 25.0% |
| ! | TAGGAAACTTAAGGAATATA+GGG | - | chr1.1:20028363-20028382 | None:intergenic | 25.0% |
| ! | TATATATCACCTTTAGTACT+TGG | - | chr1.1:20027408-20027427 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | - | chr1.1:20028322-20028341 | None:intergenic | 25.0% |
| ! | TCAATCATATATGTTCATCA+TGG | + | chr1.1:20027195-20027214 | MS.gene026324:intron | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | - | chr1.1:20029195-20029214 | None:intergenic | 25.0% |
| ! | TGTAAAAATGGCAGATATTA+AGG | + | chr1.1:20027767-20027786 | MS.gene026324:intron | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | + | chr1.1:20028484-20028503 | MS.gene026324:CDS | 25.0% |
| ! | TTAGGAAACTTAAGGAATAT+AGG | - | chr1.1:20028364-20028383 | None:intergenic | 25.0% |
| !! | ACTTTATGATGACATAGTTT+TGG | - | chr1.1:20027555-20027574 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1.1:20029340-20029359 | MS.gene026324:CDS | 25.0% |
| !! | GTAAATTTGAGATGATTCAA+CGG | + | chr1.1:20029500-20029519 | MS.gene026324:CDS | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr1.1:20028562-20028581 | MS.gene026324:CDS | 25.0% |
| !!! | ACCCATACAATATTTTTTCT+GGG | - | chr1.1:20029428-20029447 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTCCAAGTACTAA+AGG | + | chr1.1:20027396-20027415 | MS.gene026324:intron | 25.0% |
| !!! | ATATCTGCCATTTTTACATA+AGG | - | chr1.1:20027765-20027784 | None:intergenic | 25.0% |
| !!! | ATTTTTACATAAGGTACTGT+AGG | - | chr1.1:20027756-20027775 | None:intergenic | 25.0% |
| !!! | CTTTTTTATCGTGTCATAAA+TGG | + | chr1.1:20027886-20027905 | MS.gene026324:intron | 25.0% |
| !!! | GGTTTTAGTCATTCTAATAT+TGG | + | chr1.1:20027245-20027264 | MS.gene026324:intron | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1.1:20028390-20028409 | MS.gene026324:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr1.1:20028563-20028582 | None:intergenic | 25.0% |
| !!! | TTTTTACATAAGGTACTGTA+GGG | - | chr1.1:20027755-20027774 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTATCCATGACA+AGG | + | chr1.1:20029669-20029688 | MS.gene026324:intron | 25.0% |
| AAAAAATATTGTATGGGTGG+TGG | + | chr1.1:20029430-20029449 | MS.gene026324:CDS | 30.0% | |
| AAATACCAAAGCAAACTCAA+AGG | + | chr1.1:20028740-20028759 | MS.gene026324:CDS | 30.0% | |
| AAGATGATCCTATGAAAATC+TGG | - | chr1.1:20028158-20028177 | None:intergenic | 30.0% | |
| ACTTACAAAGAAATAGCCAT+TGG | - | chr1.1:20029228-20029247 | None:intergenic | 30.0% | |
| AGAAAACCTAGTGATTTCTT+TGG | - | chr1.1:20029577-20029596 | None:intergenic | 30.0% | |
| CAGAAAAAATATTGTATGGG+TGG | + | chr1.1:20029427-20029446 | MS.gene026324:CDS | 30.0% | |
| CATATACTACACACACAAAT+AGG | + | chr1.1:20027651-20027670 | MS.gene026324:intron | 30.0% | |
| CCATGACAAGGTTATAAAAA+AGG | + | chr1.1:20029681-20029700 | MS.gene026324:intron | 30.0% | |
| GAATGAAACATTCAATGACT+CGG | + | chr1.1:20027612-20027631 | MS.gene026324:intron | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | + | chr1.1:20029296-20029315 | MS.gene026324:intron | 30.0% | |
| TAATGGAACCACAACAATAA+GGG | + | chr1.1:20029357-20029376 | MS.gene026324:CDS | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1.1:20028328-20028347 | MS.gene026324:CDS | 30.0% | |
| TGTTCTCTTGAAAACTCATT+TGG | - | chr1.1:20029325-20029344 | None:intergenic | 30.0% | |
| TTAATGGAACCACAACAATA+AGG | + | chr1.1:20029356-20029375 | MS.gene026324:CDS | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | + | chr1.1:20028294-20028313 | MS.gene026324:intron | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | + | chr1.1:20028293-20028312 | MS.gene026324:intron | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | + | chr1.1:20028454-20028473 | MS.gene026324:CDS | 30.0% | |
| ! | AGAGTTATTGAATGGTTTGT+TGG | + | chr1.1:20028879-20028898 | MS.gene026324:intron | 30.0% |
| ! | GTTGGAATTTTATGTCTGAA+AGG | + | chr1.1:20028897-20028916 | MS.gene026324:intron | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr1.1:20028498-20028517 | MS.gene026324:CDS | 30.0% |
| !! | GGTGAAAGATTTTAAGTGTT+AGG | - | chr1.1:20028075-20028094 | None:intergenic | 30.0% |
| !!! | ATTCTCAGGTTGATCTTTTT+TGG | + | chr1.1:20028783-20028802 | MS.gene026324:intron | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+AGG | - | chr1.1:20028382-20028401 | None:intergenic | 30.0% |
| !!! | CACCCATACAATATTTTTTC+TGG | - | chr1.1:20029429-20029448 | None:intergenic | 30.0% |
| !!! | CCTTTTTTATAACCTTGTCA+TGG | - | chr1.1:20029684-20029703 | None:intergenic | 30.0% |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | - | chr1.1:20027688-20027707 | None:intergenic | 30.0% |
| !!! | GATCTTTTTTGGGTAGATTT+AGG | + | chr1.1:20028794-20028813 | MS.gene026324:intron | 30.0% |
| !!! | TTCTCAGGTTGATCTTTTTT+GGG | + | chr1.1:20028784-20028803 | MS.gene026324:intron | 30.0% |
| !!! | TTTGGCTCAAATCACTTTTT+AGG | - | chr1.1:20027537-20027556 | None:intergenic | 30.0% |
| !!! | TTTTTCTGGTGTTACTACTT+TGG | - | chr1.1:20027928-20027947 | None:intergenic | 30.0% |
| AAGTGATGAATCAAGTGATG+AGG | + | chr1.1:20028657-20028676 | MS.gene026324:CDS | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | + | chr1.1:20028769-20028788 | MS.gene026324:CDS | 35.0% | |
| ACTGGACAGTAATAAAGTCT+TGG | + | chr1.1:20027986-20028005 | MS.gene026324:intron | 35.0% | |
| ACTTTATTACTGTCCAGTAC+AGG | - | chr1.1:20027984-20028003 | None:intergenic | 35.0% | |
| ACTTTCTTCACCTTCTTCAA+TGG | - | chr1.1:20028686-20028705 | None:intergenic | 35.0% | |
| ATTACCAACCCTTATTGTTG+TGG | - | chr1.1:20029368-20029387 | None:intergenic | 35.0% | |
| CATTAACAGCTTCAGATCTT+AGG | - | chr1.1:20029166-20029185 | None:intergenic | 35.0% | |
| GTTGTAAAGAAGCAAGACAT+TGG | + | chr1.1:20029723-20029742 | MS.gene026324:CDS | 35.0% | |
| TACAAGCACAAACAGAACAA+TGG | + | chr1.1:20027338-20027357 | MS.gene026324:CDS | 35.0% | |
| TACTATTATCCCAGCTACAA+AGG | + | chr1.1:20027039-20027058 | MS.gene026324:CDS | 35.0% | |
| TATAAAAAAGGGGTCTCTTG+TGG | + | chr1.1:20029693-20029712 | MS.gene026324:CDS | 35.0% | |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1.1:20028410-20028429 | MS.gene026324:CDS | 35.0% | |
| ! | GTATCCACTGTTTCAAGTAA+TGG | - | chr1.1:20029303-20029322 | None:intergenic | 35.0% |
| !! | ACAAAGCAAATCCACTTTTG+TGG | + | chr1.1:20027674-20027693 | MS.gene026324:intron | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1.1:20028400-20028419 | MS.gene026324:CDS | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1.1:20029371-20029390 | MS.gene026324:CDS | 35.0% |
| !! | GAATTTTCTCTTGCCATTTC+TGG | - | chr1.1:20028767-20028786 | None:intergenic | 35.0% |
| !! | TTTTCTAGCCTTCTTTACCA+TGG | - | chr1.1:20029141-20029160 | None:intergenic | 35.0% |
| AAATACCTTGAAACTGCTCC+AGG | - | chr1.1:20027072-20027091 | None:intergenic | 40.0% | |
| AAGACATTGGAGGAACATCT+AGG | + | chr1.1:20029736-20029755 | MS.gene026324:CDS | 40.0% | |
| AGCTAAGGCTTAGAGAAGTA+AGG | - | chr1.1:20028096-20028115 | None:intergenic | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | + | chr1.1:20029101-20029120 | MS.gene026324:intron | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | + | chr1.1:20029209-20029228 | MS.gene026324:CDS | 40.0% | |
| CAAACTCAAAGGACCAGAAA+TGG | + | chr1.1:20028751-20028770 | MS.gene026324:CDS | 40.0% | |
| CAACACCGTTAGGAAACTTA+AGG | - | chr1.1:20028372-20028391 | None:intergenic | 40.0% | |
| CATTGTGAGCTCATGTGAAA+TGG | + | chr1.1:20027728-20027747 | MS.gene026324:intron | 40.0% | |
| CCAAAGCCAAAGAAATCACT+AGG | + | chr1.1:20029568-20029587 | MS.gene026324:CDS | 40.0% | |
| GAGGGTTCCAAAGAAATATG+TGG | + | chr1.1:20028312-20028331 | MS.gene026324:intron | 40.0% | |
| GAGTAATGAGAGTTCAGATG+AGG | + | chr1.1:20028714-20028733 | MS.gene026324:CDS | 40.0% | |
| GTAAAGAAGCAAGACATTGG+AGG | + | chr1.1:20029726-20029745 | MS.gene026324:CDS | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | + | chr1.1:20029755-20029774 | MS.gene026324:CDS | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | - | chr1.1:20029112-20029131 | None:intergenic | 40.0% | |
| TTTCTCTACATGACCTGTAC+TGG | + | chr1.1:20027968-20027987 | MS.gene026324:intron | 40.0% | |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | - | chr1.1:20029571-20029590 | None:intergenic | 40.0% |
| !! | AATATTGTATGGGTGGTGGA+TGG | + | chr1.1:20029434-20029453 | MS.gene026324:CDS | 40.0% |
| !! | AGTGAGTGAGTATTGAGCTA+AGG | - | chr1.1:20028111-20028130 | None:intergenic | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | + | chr1.1:20029446-20029465 | MS.gene026324:CDS | 40.0% |
| !! | TGGTGTTACTACTTTGGTGT+TGG | - | chr1.1:20027922-20027941 | None:intergenic | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | - | chr1.1:20029560-20029579 | None:intergenic | 40.0% |
| AGGTAGTAACAAAGTGGCCA+TGG | + | chr1.1:20029121-20029140 | MS.gene026324:intron | 45.0% | |
| CAAAGTGGCCATGGTAAAGA+AGG | + | chr1.1:20029130-20029149 | MS.gene026324:CDS | 45.0% | |
| CTTGGCAGGTAGTAACAAAG+TGG | + | chr1.1:20029115-20029134 | MS.gene026324:intron | 45.0% | |
| GATGAGGAAGCCATTGAAGA+AGG | + | chr1.1:20028673-20028692 | MS.gene026324:CDS | 45.0% | |
| GGAACCACAACAATAAGGGT+TGG | + | chr1.1:20029361-20029380 | MS.gene026324:CDS | 45.0% | |
| TACATACATCACCAGCTTGC+AGG | - | chr1.1:20026979-20026998 | None:intergenic | 45.0% | |
| TGTATGCAGTGTGAGACTGT+TGG | + | chr1.1:20027813-20027832 | MS.gene026324:intron | 45.0% | |
| ! | CTGGTCCTTTGAGTTTGCTT+TGG | - | chr1.1:20028748-20028767 | None:intergenic | 45.0% |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1.1:20029378-20029397 | MS.gene026324:CDS | 45.0% |
| !! | AAAAATAATAAATACTTAAT+TGG | + | chr1.1:20029028-20029047 | MS.gene026324:intron | 5.0% |
| AGCTACAAAGGAACCATGCC+TGG | + | chr1.1:20027051-20027070 | MS.gene026324:CDS | 50.0% | |
| AGGCATGGTTCCTTTGTAGC+TGG | - | chr1.1:20027052-20027071 | None:intergenic | 50.0% | |
| CAGGAACATAACCTGCAAGC+TGG | + | chr1.1:20026965-20026984 | MS.gene026324:CDS | 50.0% | |
| GGCATGGTTCCTTTGTAGCT+GGG | - | chr1.1:20027051-20027070 | None:intergenic | 50.0% | |
| TGGTTGGAAGTCGTTTGTGC+AGG | + | chr1.1:20026946-20026965 | MS.gene026324:CDS | 50.0% | |
| ! | GGTGCTGAAGACACAGAAGA+AGG | + | chr1.1:20028583-20028602 | MS.gene026324:CDS | 50.0% |
| CCATGCCTGGAGCAGTTTCA+AGG | + | chr1.1:20027064-20027083 | MS.gene026324:CDS | 55.0% | |
| CCTTGAAACTGCTCCAGGCA+TGG | - | chr1.1:20027067-20027086 | None:intergenic | 55.0% | |
| GGAGTGTGGAAGTGAGTGTG+AGG | + | chr1.1:20029392-20029411 | MS.gene026324:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 20026938 | 20029777 | 20026938 | ID=MS.gene026324 |
| chr1.1 | mRNA | 20026938 | 20029777 | 20026938 | ID=MS.gene026324.t1;Parent=MS.gene026324 |
| chr1.1 | exon | 20026938 | 20027085 | 20026938 | ID=MS.gene026324.t1.exon1;Parent=MS.gene026324.t1 |
| chr1.1 | CDS | 20026938 | 20027085 | 20026938 | ID=cds.MS.gene026324.t1;Parent=MS.gene026324.t1 |
| chr1.1 | exon | 20027312 | 20027366 | 20027312 | ID=MS.gene026324.t1.exon2;Parent=MS.gene026324.t1 |
| chr1.1 | CDS | 20027312 | 20027366 | 20027312 | ID=cds.MS.gene026324.t1;Parent=MS.gene026324.t1 |
| chr1.1 | exon | 20027822 | 20027849 | 20027822 | ID=MS.gene026324.t1.exon3;Parent=MS.gene026324.t1 |
| chr1.1 | CDS | 20027822 | 20027849 | 20027822 | ID=cds.MS.gene026324.t1;Parent=MS.gene026324.t1 |
| chr1.1 | exon | 20028313 | 20028790 | 20028313 | ID=MS.gene026324.t1.exon4;Parent=MS.gene026324.t1 |
| chr1.1 | CDS | 20028313 | 20028790 | 20028313 | ID=cds.MS.gene026324.t1;Parent=MS.gene026324.t1 |
| chr1.1 | exon | 20029123 | 20029241 | 20029123 | ID=MS.gene026324.t1.exon5;Parent=MS.gene026324.t1 |
| chr1.1 | CDS | 20029123 | 20029241 | 20029123 | ID=cds.MS.gene026324.t1;Parent=MS.gene026324.t1 |
| chr1.1 | exon | 20029316 | 20029589 | 20029316 | ID=MS.gene026324.t1.exon6;Parent=MS.gene026324.t1 |
| chr1.1 | CDS | 20029316 | 20029589 | 20029316 | ID=cds.MS.gene026324.t1;Parent=MS.gene026324.t1 |
| chr1.1 | exon | 20029691 | 20029777 | 20029691 | ID=MS.gene026324.t1.exon7;Parent=MS.gene026324.t1 |
| chr1.1 | CDS | 20029691 | 20029777 | 20029691 | ID=cds.MS.gene026324.t1;Parent=MS.gene026324.t1 |
| Gene Sequence |
| Protein sequence |
