Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026335.t1 | XP_024630392.1 | 87 | 322 | 25 | 3 | 1 | 322 | 1 | 305 | 1.60E-152 | 548.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026335.t1 | Q84R27 | 33.3 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 6.1e-12 | 73.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026335.t1 | A0A396JU70 | 86.9 | 320 | 25 | 3 | 1 | 320 | 1 | 303 | 1.3e-151 | 545.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026335.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026335.t1 | MTR_4g119990 | 66.159 | 328 | 97 | 7 | 1 | 319 | 1 | 323 | 1.40e-144 | 412 |
MS.gene026335.t1 | MTR_6g043890 | 65.902 | 305 | 90 | 6 | 1 | 299 | 1 | 297 | 9.11e-134 | 384 |
MS.gene026335.t1 | MTR_1g035440 | 59.671 | 243 | 72 | 4 | 1 | 217 | 1 | 243 | 2.14e-76 | 234 |
MS.gene026335.t1 | MTR_3g098790 | 30.293 | 307 | 191 | 8 | 9 | 307 | 7 | 298 | 4.40e-33 | 125 |
MS.gene026335.t1 | MTR_5g044670 | 30.792 | 341 | 193 | 14 | 1 | 322 | 1 | 317 | 1.12e-32 | 124 |
MS.gene026335.t1 | MTR_7g050720 | 29.206 | 315 | 195 | 9 | 13 | 307 | 8 | 314 | 2.03e-31 | 120 |
MS.gene026335.t1 | MTR_1g108780 | 27.241 | 290 | 195 | 7 | 31 | 312 | 13 | 294 | 1.39e-30 | 120 |
MS.gene026335.t1 | MTR_1g035460 | 29.605 | 304 | 186 | 9 | 31 | 316 | 2 | 295 | 2.97e-30 | 118 |
MS.gene026335.t1 | MTR_3g061370 | 28.387 | 310 | 180 | 10 | 9 | 307 | 3 | 281 | 1.15e-29 | 114 |
MS.gene026335.t1 | MTR_7g050710 | 29.167 | 312 | 161 | 9 | 13 | 293 | 11 | 293 | 1.31e-29 | 115 |
MS.gene026335.t1 | MTR_7g050560 | 29.268 | 287 | 176 | 7 | 13 | 293 | 11 | 276 | 2.23e-29 | 114 |
MS.gene026335.t1 | MTR_8g103940 | 26.367 | 311 | 214 | 8 | 13 | 316 | 37 | 339 | 5.14e-29 | 116 |
MS.gene026335.t1 | MTR_3g061350 | 29.085 | 306 | 175 | 11 | 13 | 307 | 10 | 284 | 1.20e-28 | 112 |
MS.gene026335.t1 | MTR_3g061320 | 28.197 | 305 | 174 | 10 | 13 | 307 | 10 | 279 | 3.17e-28 | 110 |
MS.gene026335.t1 | MTR_1g035570 | 29.730 | 296 | 175 | 8 | 24 | 301 | 14 | 294 | 6.96e-28 | 112 |
MS.gene026335.t1 | MTR_6g061070 | 27.327 | 333 | 209 | 12 | 9 | 319 | 12 | 333 | 1.04e-27 | 112 |
MS.gene026335.t1 | MTR_3g061310 | 29.276 | 304 | 178 | 10 | 13 | 307 | 10 | 285 | 2.92e-27 | 108 |
MS.gene026335.t1 | MTR_1g035640 | 30.547 | 311 | 178 | 13 | 24 | 322 | 14 | 298 | 3.60e-27 | 111 |
MS.gene026335.t1 | MTR_3g061340 | 29.153 | 295 | 162 | 12 | 15 | 300 | 12 | 268 | 1.58e-26 | 106 |
MS.gene026335.t1 | MTR_7g050580 | 29.514 | 288 | 174 | 7 | 13 | 293 | 11 | 276 | 2.91e-26 | 106 |
MS.gene026335.t1 | MTR_3g061330 | 27.734 | 256 | 150 | 8 | 13 | 262 | 10 | 236 | 6.69e-24 | 98.6 |
MS.gene026335.t1 | MTR_1g033740 | 32.178 | 202 | 102 | 8 | 1 | 180 | 1 | 189 | 3.54e-22 | 92.4 |
MS.gene026335.t1 | MTR_1g035620 | 28.328 | 293 | 164 | 9 | 15 | 295 | 9 | 267 | 8.27e-22 | 95.5 |
MS.gene026335.t1 | MTR_7g050590 | 28.723 | 282 | 165 | 10 | 31 | 293 | 2 | 266 | 2.26e-21 | 92.4 |
MS.gene026335.t1 | MTR_1g035480 | 33.702 | 181 | 94 | 7 | 1 | 167 | 1 | 169 | 3.69e-21 | 89.4 |
MS.gene026335.t1 | MTR_3g061290 | 38.000 | 150 | 81 | 7 | 13 | 153 | 10 | 156 | 1.10e-20 | 88.6 |
MS.gene026335.t1 | MTR_1g050845 | 27.875 | 287 | 161 | 8 | 15 | 295 | 9 | 255 | 2.93e-20 | 92.0 |
MS.gene026335.t1 | MTR_1g035510 | 30.088 | 226 | 121 | 9 | 31 | 242 | 2 | 204 | 6.67e-20 | 87.0 |
MS.gene026335.t1 | MTR_1g035500 | 33.136 | 169 | 90 | 6 | 9 | 165 | 19 | 176 | 1.77e-19 | 85.1 |
MS.gene026335.t1 | MTR_3g005490 | 27.063 | 303 | 148 | 11 | 14 | 307 | 20 | 258 | 5.93e-19 | 85.1 |
MS.gene026335.t1 | MTR_1g021380 | 27.653 | 311 | 183 | 12 | 13 | 293 | 20 | 318 | 1.05e-16 | 80.1 |
MS.gene026335.t1 | MTR_3g005480 | 35.965 | 114 | 66 | 2 | 14 | 124 | 20 | 129 | 1.30e-16 | 78.6 |
MS.gene026335.t1 | MTR_5g070440 | 27.703 | 296 | 164 | 11 | 14 | 307 | 20 | 267 | 1.99e-16 | 78.2 |
MS.gene026335.t1 | MTR_1g035470 | 40.625 | 96 | 53 | 3 | 31 | 126 | 2 | 93 | 7.93e-16 | 73.6 |
MS.gene026335.t1 | MTR_3g005460 | 25.352 | 284 | 169 | 9 | 13 | 293 | 260 | 503 | 3.12e-15 | 76.6 |
MS.gene026335.t1 | MTR_3g005460 | 23.642 | 313 | 148 | 10 | 14 | 314 | 24 | 257 | 1.57e-13 | 71.6 |
MS.gene026335.t1 | MTR_1g035650 | 30.464 | 151 | 98 | 3 | 15 | 165 | 9 | 152 | 2.39e-14 | 71.2 |
MS.gene026335.t1 | MTR_3g005495 | 30.636 | 173 | 106 | 4 | 14 | 175 | 242 | 411 | 3.45e-14 | 73.2 |
MS.gene026335.t1 | MTR_3g005495 | 24.316 | 329 | 203 | 13 | 31 | 320 | 29 | 350 | 1.32e-11 | 65.5 |
MS.gene026335.t1 | MTR_1g021360 | 26.780 | 295 | 158 | 12 | 26 | 293 | 193 | 456 | 4.54e-14 | 73.2 |
MS.gene026335.t1 | MTR_1g021400 | 24.159 | 327 | 186 | 11 | 13 | 293 | 28 | 338 | 9.22e-13 | 68.6 |
MS.gene026335.t1 | MTR_3g005420 | 24.415 | 299 | 170 | 10 | 14 | 307 | 288 | 535 | 1.27e-12 | 68.6 |
MS.gene026335.t1 | MTR_3g061220 | 30.909 | 110 | 60 | 2 | 13 | 122 | 10 | 103 | 2.46e-11 | 60.5 |
MS.gene026335.t1 | MTR_4g068320 | 35.135 | 111 | 69 | 2 | 15 | 123 | 6 | 115 | 5.76e-11 | 63.5 |
MS.gene026335.t1 | MTR_1g021410 | 24.367 | 316 | 194 | 13 | 16 | 293 | 23 | 331 | 7.88e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026335.t1 | AT4G33280 | 24.620 | 329 | 197 | 8 | 13 | 315 | 23 | 326 | 3.42e-16 | 78.6 |
MS.gene026335.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 2.66e-14 | 71.2 |
MS.gene026335.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 3.03e-14 | 70.9 |
MS.gene026335.t1 | AT1G49475 | 36.036 | 111 | 69 | 2 | 15 | 125 | 34 | 142 | 6.44e-14 | 69.7 |
MS.gene026335.t1 | AT4G01580 | 31.532 | 111 | 75 | 1 | 5 | 115 | 20 | 129 | 3.56e-13 | 67.4 |
Find 0 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATAAAAAATCTCATTA+TGG | - | 10221:22518-22537 | MS.gene026335:intergenic | 10.0% |
!!! | AACAATTTATGAAAATTTTA+TGG | + | 10221:23084-23103 | MS.gene026335:intron | 10.0% |
!!! | TATTTTTTGTCTTATTTTAT+AGG | + | 10221:22128-22147 | MS.gene026335:intron | 10.0% |
!! | GGAAATTCATTTAATATAAT+GGG | + | 10221:23048-23067 | MS.gene026335:intron | 15.0% |
!! | TATAATTTACCTTCAAAATA+AGG | - | 10221:23011-23030 | MS.gene026335:intergenic | 15.0% |
!!! | TGAAATTATTAATCTAAAAC+AGG | + | 10221:22728-22747 | MS.gene026335:intron | 15.0% |
!! | AAAATGTGATCTTATGATAT+TGG | + | 10221:21410-21429 | MS.gene026335:intron | 20.0% |
!! | AATAGTGATTGTTCAAATAT+AGG | + | 10221:21454-21473 | MS.gene026335:intron | 20.0% |
!! | AATCTCATTATGGTATAATT+TGG | - | 10221:22508-22527 | MS.gene026335:intergenic | 20.0% |
!! | AGAAAAACAATTTCTTCATT+AGG | - | 10221:21362-21381 | MS.gene026335:intergenic | 20.0% |
!! | ATTTATCTTTGTCAACAAAA+AGG | - | 10221:22815-22834 | MS.gene026335:intergenic | 20.0% |
!! | ATTTCAAATTATTCTCTTCA+CGG | - | 10221:22896-22915 | MS.gene026335:intergenic | 20.0% |
!! | CAAATATGCATTACAAAATT+TGG | + | 10221:21258-21277 | MS.gene026335:intron | 20.0% |
!! | CAATATAATAATTCATGTGT+TGG | + | 10221:23129-23148 | MS.gene026335:intron | 20.0% |
!! | CGGAAATTCATTTAATATAA+TGG | + | 10221:23047-23066 | MS.gene026335:intron | 20.0% |
!! | GAAAAACAATTTCTTCATTA+GGG | - | 10221:21361-21380 | MS.gene026335:intergenic | 20.0% |
!! | TATATTAAATGAATTTCCGA+TGG | - | 10221:23046-23065 | MS.gene026335:intergenic | 20.0% |
!! | TTCAAGATAAAGTAGTTAAA+TGG | - | 10221:22712-22731 | MS.gene026335:intergenic | 20.0% |
!! | TTTATCTTTGTCAACAAAAA+GGG | - | 10221:22814-22833 | MS.gene026335:intergenic | 20.0% |
!!! | GAAGAGAATAATTTGAAATT+TGG | + | 10221:22897-22916 | MS.gene026335:CDS | 20.0% |
!!! | TAAAATGTATGTGTATTGAT+AGG | + | 10221:22674-22693 | MS.gene026335:intron | 20.0% |
!!! | TGATCACTTTTATTTTTGAA+AGG | + | 10221:22343-22362 | MS.gene026335:intron | 20.0% |
!!! | TGTTGCTACTAATTTTTTTT+TGG | + | 10221:22151-22170 | MS.gene026335:intron | 20.0% |
!!! | TTTGAATGAATCACAATTTT+TGG | + | 10221:21780-21799 | MS.gene026335:CDS | 20.0% |
!!! | TTTTTGTTGACAAAGATAAA+TGG | + | 10221:22814-22833 | MS.gene026335:CDS | 20.0% |
! | AAGTAGCTGTAATGATATTA+AGG | + | 10221:22198-22217 | MS.gene026335:CDS | 25.0% |
! | CAAAAAATTTCTTCACTTTC+TGG | - | 10221:22243-22262 | MS.gene026335:intergenic | 25.0% |
! | CTATTCTTTGATGAGATTAA+TGG | + | 10221:22449-22468 | MS.gene026335:intron | 25.0% |
! | CTCTTTAATGTGATTGTATT+CGG | + | 10221:21826-21845 | MS.gene026335:CDS | 25.0% |
! | GAAGAATAACCTTAAAAAAG+TGG | - | 10221:21169-21188 | MS.gene026335:intergenic | 25.0% |
! | GAGAAAATAACAACTTGAAA+TGG | - | 10221:22966-22985 | MS.gene026335:intergenic | 25.0% |
! | TATATTTGATTAGTGTCCAT+CGG | + | 10221:23027-23046 | MS.gene026335:intron | 25.0% |
! | TGAATTTGTCAAGAAACATA+TGG | + | 10221:22761-22780 | MS.gene026335:CDS | 25.0% |
! | TGCATATTGTGAAAAATCAA+GGG | - | 10221:21240-21259 | MS.gene026335:intergenic | 25.0% |
! | TGTTTCTTGACAAATTCATT+TGG | - | 10221:22759-22778 | MS.gene026335:intergenic | 25.0% |
! | TTGCATATTGTGAAAAATCA+AGG | - | 10221:21241-21260 | MS.gene026335:intergenic | 25.0% |
!! | ATACCTTTTCACAAAACTTA+TGG | - | 10221:21629-21648 | MS.gene026335:intergenic | 25.0% |
!! | TACCAATTTTTCTTCTTGAA+GGG | - | 10221:21198-21217 | MS.gene026335:intergenic | 25.0% |
!! | TACCTTTTCACAAAACTTAT+GGG | - | 10221:21628-21647 | MS.gene026335:intergenic | 25.0% |
!! | TATGATGTTACATTTTGCAA+TGG | + | 10221:21730-21749 | MS.gene026335:CDS | 25.0% |
!! | TTACCAATTTTTCTTCTTGA+AGG | - | 10221:21199-21218 | MS.gene026335:intergenic | 25.0% |
!!! | GAATTCTCAATTTTTTTAGC+AGG | + | 10221:22175-22194 | MS.gene026335:intron | 25.0% |
!!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | 10221:21629-21648 | MS.gene026335:CDS | 25.0% |
!!! | TCAAGTTGTTATTTTCTCTT+TGG | + | 10221:22968-22987 | MS.gene026335:CDS | 25.0% |
!!! | TGTTATTTTCTCTTTGGAAA+AGG | + | 10221:22974-22993 | MS.gene026335:CDS | 25.0% |
!!! | TTGAAAACTCCTTATTTTGA+AGG | + | 10221:22999-23018 | MS.gene026335:CDS | 25.0% |
AGTGATTGTTCAAATATAGG+TGG | + | 10221:21457-21476 | MS.gene026335:intron | 30.0% | |
ATACATTGATAGAGATCTCT+TGG | + | 10221:22303-22322 | MS.gene026335:CDS | 30.0% | |
ATCAACTCGAATGAACAAAA+AGG | + | 10221:22006-22025 | MS.gene026335:CDS | 30.0% | |
CCAATCACAATCTATTATGT+AGG | - | 10221:22564-22583 | MS.gene026335:intergenic | 30.0% | |
CCTACATAATAGATTGTGAT+TGG | + | 10221:22561-22580 | MS.gene026335:intron | 30.0% | |
TACCCTTCAAGAAGAAAAAT+TGG | + | 10221:21193-21212 | MS.gene026335:CDS | 30.0% | |
TTCTTACACACTTTCATAGA+CGG | - | 10221:21979-21998 | MS.gene026335:intergenic | 30.0% | |
! | ATGTTACATTTTGCAATGGT+TGG | + | 10221:21734-21753 | MS.gene026335:CDS | 30.0% |
!! | TGTGTTTTTGTGCTAAACAA+AGG | + | 10221:22927-22946 | MS.gene026335:CDS | 30.0% |
!! | TTTGTGAAAAGGTATTGGAA+AGG | + | 10221:21634-21653 | MS.gene026335:CDS | 30.0% |
!!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | 10221:21693-21712 | MS.gene026335:CDS | 30.0% |
!!! | TAATGGTGTCCACTTTTTTA+AGG | + | 10221:21157-21176 | MS.gene026335:CDS | 30.0% |
!!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | 10221:21692-21711 | MS.gene026335:CDS | 30.0% |
AAACAATCTGCACTAACTTG+TGG | + | 10221:22858-22877 | MS.gene026335:CDS | 35.0% | |
CAAGAAACATATGGACATGA+TGG | + | 10221:22770-22789 | MS.gene026335:CDS | 35.0% | |
GAACATGATCATCAGAGTAA+TGG | + | 10221:21140-21159 | MS.gene026335:CDS | 35.0% | |
GTGATTGTATTCGGTAAATG+CGG | + | 10221:21835-21854 | MS.gene026335:CDS | 35.0% | |
TAACAAACCCAGTTACTCTA+AGG | + | 10221:21659-21678 | MS.gene026335:CDS | 35.0% | |
TTGGAAACCTTAGAGTAACT+GGG | - | 10221:21669-21688 | MS.gene026335:intergenic | 35.0% | |
TTTGGAAACCTTAGAGTAAC+TGG | - | 10221:21670-21689 | MS.gene026335:intergenic | 35.0% | |
! | AAACATATGGACATGATGGA+AGG | + | 10221:22774-22793 | MS.gene026335:CDS | 35.0% |
! | ACTTTCTTTTCCACCAAGTT+TGG | - | 10221:21688-21707 | MS.gene026335:intergenic | 35.0% |
! | CTTCACTAGTTTCTCTTGAA+GGG | - | 10221:21876-21895 | MS.gene026335:intergenic | 35.0% |
! | TCTTCACTAGTTTCTCTTGA+AGG | - | 10221:21877-21896 | MS.gene026335:intergenic | 35.0% |
!! | GTTTTTGAGCATGTGAACAA+TGG | + | 10221:22066-22085 | MS.gene026335:CDS | 35.0% |
!! | TACTCTAAGGTTTCCAAACT+TGG | + | 10221:21672-21691 | MS.gene026335:CDS | 35.0% |
!! | TGCCCATAAGTTTTGTGAAA+AGG | + | 10221:21623-21642 | MS.gene026335:CDS | 35.0% |
AAGGATCTAAGCATGAGAAG+AGG | + | 10221:22025-22044 | MS.gene026335:CDS | 40.0% | |
TTGAGCATGTGAACAATGGT+TGG | + | 10221:22070-22089 | MS.gene026335:intron | 40.0% | |
! | AATCTGCACTAACTTGTGGT+TGG | + | 10221:22862-22881 | MS.gene026335:CDS | 40.0% |
! | TCATGTGTTGGTCTATTGCA+GGG | + | 10221:23141-23160 | MS.gene026335:intron | 40.0% |
! | TCTAAGGTTTCCAAACTTGG+TGG | + | 10221:21675-21694 | MS.gene026335:CDS | 40.0% |
! | TTCATGTGTTGGTCTATTGC+AGG | + | 10221:23140-23159 | MS.gene026335:intron | 40.0% |
ATTAGGGCTGCATCCAACAA+AGG | - | 10221:21345-21364 | MS.gene026335:intergenic | 45.0% | |
CTTCATCATCACGCGGTAAA+AGG | + | 10221:21938-21957 | MS.gene026335:CDS | 45.0% | |
GAGAATCCTTCATCATCACG+CGG | + | 10221:21931-21950 | MS.gene026335:CDS | 45.0% | |
! | CATCCAACAAAGGCTAGCTA+GGG | - | 10221:21335-21354 | MS.gene026335:intergenic | 45.0% |
!! | CTTTTACCGCGTGATGATGA+AGG | - | 10221:21940-21959 | MS.gene026335:intergenic | 45.0% |
CACACTTTCATAGACGGTGC+TGG | - | 10221:21973-21992 | MS.gene026335:intergenic | 50.0% | |
! | GCATCCAACAAAGGCTAGCT+AGG | - | 10221:21336-21355 | MS.gene026335:intergenic | 50.0% |
! | GTGTTGGTCTATTGCAGGGT+TGG | + | 10221:23145-23164 | MS.gene026335:intron | 50.0% |
!! | CATCCCTAGCTAGCCTTTGT+TGG | + | 10221:21329-21348 | MS.gene026335:intron | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
10221 | gene | 21128 | 23172 | 21128 | ID=MS.gene026335 |
10221 | mRNA | 21128 | 23172 | 21128 | ID=MS.gene026335.t1;Parent=MS.gene026335 |
10221 | exon | 21128 | 21214 | 21128 | ID=MS.gene026335.t1.exon1;Parent=MS.gene026335.t1 |
10221 | CDS | 21128 | 21214 | 21128 | ID=cds.MS.gene026335.t1;Parent=MS.gene026335.t1 |
10221 | exon | 21619 | 22087 | 21619 | ID=MS.gene026335.t1.exon2;Parent=MS.gene026335.t1 |
10221 | CDS | 21619 | 22087 | 21619 | ID=cds.MS.gene026335.t1;Parent=MS.gene026335.t1 |
10221 | exon | 22194 | 22324 | 22194 | ID=MS.gene026335.t1.exon3;Parent=MS.gene026335.t1 |
10221 | CDS | 22194 | 22324 | 22194 | ID=cds.MS.gene026335.t1;Parent=MS.gene026335.t1 |
10221 | exon | 22750 | 23020 | 22750 | ID=MS.gene026335.t1.exon4;Parent=MS.gene026335.t1 |
10221 | CDS | 22750 | 23020 | 22750 | ID=cds.MS.gene026335.t1;Parent=MS.gene026335.t1 |
10221 | exon | 23162 | 23172 | 23162 | ID=MS.gene026335.t1.exon5;Parent=MS.gene026335.t1 |
10221 | CDS | 23162 | 23172 | 23162 | ID=cds.MS.gene026335.t1;Parent=MS.gene026335.t1 |
Gene Sequence |
Protein sequence |