Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026336.t1 | XP_024630392.1 | 87 | 322 | 25 | 3 | 1 | 322 | 1 | 305 | 1.60E-152 | 548.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026336.t1 | Q84R27 | 33.3 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 6.1e-12 | 73.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026336.t1 | A0A396JU70 | 86.9 | 320 | 25 | 3 | 1 | 320 | 1 | 303 | 1.3e-151 | 545.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene026336.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026336.t1 | MTR_4g119990 | 66.159 | 328 | 97 | 7 | 1 | 319 | 1 | 323 | 1.40e-144 | 412 |
| MS.gene026336.t1 | MTR_6g043890 | 65.902 | 305 | 90 | 6 | 1 | 299 | 1 | 297 | 9.11e-134 | 384 |
| MS.gene026336.t1 | MTR_1g035440 | 59.671 | 243 | 72 | 4 | 1 | 217 | 1 | 243 | 2.14e-76 | 234 |
| MS.gene026336.t1 | MTR_3g098790 | 30.293 | 307 | 191 | 8 | 9 | 307 | 7 | 298 | 4.40e-33 | 125 |
| MS.gene026336.t1 | MTR_5g044670 | 30.792 | 341 | 193 | 14 | 1 | 322 | 1 | 317 | 1.12e-32 | 124 |
| MS.gene026336.t1 | MTR_7g050720 | 29.206 | 315 | 195 | 9 | 13 | 307 | 8 | 314 | 2.03e-31 | 120 |
| MS.gene026336.t1 | MTR_1g108780 | 27.241 | 290 | 195 | 7 | 31 | 312 | 13 | 294 | 1.39e-30 | 120 |
| MS.gene026336.t1 | MTR_1g035460 | 29.605 | 304 | 186 | 9 | 31 | 316 | 2 | 295 | 2.97e-30 | 118 |
| MS.gene026336.t1 | MTR_3g061370 | 28.387 | 310 | 180 | 10 | 9 | 307 | 3 | 281 | 1.15e-29 | 114 |
| MS.gene026336.t1 | MTR_7g050710 | 29.167 | 312 | 161 | 9 | 13 | 293 | 11 | 293 | 1.31e-29 | 115 |
| MS.gene026336.t1 | MTR_7g050560 | 29.268 | 287 | 176 | 7 | 13 | 293 | 11 | 276 | 2.23e-29 | 114 |
| MS.gene026336.t1 | MTR_8g103940 | 26.367 | 311 | 214 | 8 | 13 | 316 | 37 | 339 | 5.14e-29 | 116 |
| MS.gene026336.t1 | MTR_3g061350 | 29.085 | 306 | 175 | 11 | 13 | 307 | 10 | 284 | 1.20e-28 | 112 |
| MS.gene026336.t1 | MTR_3g061320 | 28.197 | 305 | 174 | 10 | 13 | 307 | 10 | 279 | 3.17e-28 | 110 |
| MS.gene026336.t1 | MTR_1g035570 | 29.730 | 296 | 175 | 8 | 24 | 301 | 14 | 294 | 6.96e-28 | 112 |
| MS.gene026336.t1 | MTR_6g061070 | 27.327 | 333 | 209 | 12 | 9 | 319 | 12 | 333 | 1.04e-27 | 112 |
| MS.gene026336.t1 | MTR_3g061310 | 29.276 | 304 | 178 | 10 | 13 | 307 | 10 | 285 | 2.92e-27 | 108 |
| MS.gene026336.t1 | MTR_1g035640 | 30.547 | 311 | 178 | 13 | 24 | 322 | 14 | 298 | 3.60e-27 | 111 |
| MS.gene026336.t1 | MTR_3g061340 | 29.153 | 295 | 162 | 12 | 15 | 300 | 12 | 268 | 1.58e-26 | 106 |
| MS.gene026336.t1 | MTR_7g050580 | 29.514 | 288 | 174 | 7 | 13 | 293 | 11 | 276 | 2.91e-26 | 106 |
| MS.gene026336.t1 | MTR_3g061330 | 27.734 | 256 | 150 | 8 | 13 | 262 | 10 | 236 | 6.69e-24 | 98.6 |
| MS.gene026336.t1 | MTR_1g033740 | 32.178 | 202 | 102 | 8 | 1 | 180 | 1 | 189 | 3.54e-22 | 92.4 |
| MS.gene026336.t1 | MTR_1g035620 | 28.328 | 293 | 164 | 9 | 15 | 295 | 9 | 267 | 8.27e-22 | 95.5 |
| MS.gene026336.t1 | MTR_7g050590 | 28.723 | 282 | 165 | 10 | 31 | 293 | 2 | 266 | 2.26e-21 | 92.4 |
| MS.gene026336.t1 | MTR_1g035480 | 33.702 | 181 | 94 | 7 | 1 | 167 | 1 | 169 | 3.69e-21 | 89.4 |
| MS.gene026336.t1 | MTR_3g061290 | 38.000 | 150 | 81 | 7 | 13 | 153 | 10 | 156 | 1.10e-20 | 88.6 |
| MS.gene026336.t1 | MTR_1g050845 | 27.875 | 287 | 161 | 8 | 15 | 295 | 9 | 255 | 2.93e-20 | 92.0 |
| MS.gene026336.t1 | MTR_1g035510 | 30.088 | 226 | 121 | 9 | 31 | 242 | 2 | 204 | 6.67e-20 | 87.0 |
| MS.gene026336.t1 | MTR_1g035500 | 33.136 | 169 | 90 | 6 | 9 | 165 | 19 | 176 | 1.77e-19 | 85.1 |
| MS.gene026336.t1 | MTR_3g005490 | 27.063 | 303 | 148 | 11 | 14 | 307 | 20 | 258 | 5.93e-19 | 85.1 |
| MS.gene026336.t1 | MTR_1g021380 | 27.653 | 311 | 183 | 12 | 13 | 293 | 20 | 318 | 1.05e-16 | 80.1 |
| MS.gene026336.t1 | MTR_3g005480 | 35.965 | 114 | 66 | 2 | 14 | 124 | 20 | 129 | 1.30e-16 | 78.6 |
| MS.gene026336.t1 | MTR_5g070440 | 27.703 | 296 | 164 | 11 | 14 | 307 | 20 | 267 | 1.99e-16 | 78.2 |
| MS.gene026336.t1 | MTR_1g035470 | 40.625 | 96 | 53 | 3 | 31 | 126 | 2 | 93 | 7.93e-16 | 73.6 |
| MS.gene026336.t1 | MTR_3g005460 | 25.352 | 284 | 169 | 9 | 13 | 293 | 260 | 503 | 3.12e-15 | 76.6 |
| MS.gene026336.t1 | MTR_3g005460 | 23.642 | 313 | 148 | 10 | 14 | 314 | 24 | 257 | 1.57e-13 | 71.6 |
| MS.gene026336.t1 | MTR_1g035650 | 30.464 | 151 | 98 | 3 | 15 | 165 | 9 | 152 | 2.39e-14 | 71.2 |
| MS.gene026336.t1 | MTR_3g005495 | 30.636 | 173 | 106 | 4 | 14 | 175 | 242 | 411 | 3.45e-14 | 73.2 |
| MS.gene026336.t1 | MTR_3g005495 | 24.316 | 329 | 203 | 13 | 31 | 320 | 29 | 350 | 1.32e-11 | 65.5 |
| MS.gene026336.t1 | MTR_1g021360 | 26.780 | 295 | 158 | 12 | 26 | 293 | 193 | 456 | 4.54e-14 | 73.2 |
| MS.gene026336.t1 | MTR_1g021400 | 24.159 | 327 | 186 | 11 | 13 | 293 | 28 | 338 | 9.22e-13 | 68.6 |
| MS.gene026336.t1 | MTR_3g005420 | 24.415 | 299 | 170 | 10 | 14 | 307 | 288 | 535 | 1.27e-12 | 68.6 |
| MS.gene026336.t1 | MTR_3g061220 | 30.909 | 110 | 60 | 2 | 13 | 122 | 10 | 103 | 2.46e-11 | 60.5 |
| MS.gene026336.t1 | MTR_4g068320 | 35.135 | 111 | 69 | 2 | 15 | 123 | 6 | 115 | 5.76e-11 | 63.5 |
| MS.gene026336.t1 | MTR_1g021410 | 24.367 | 316 | 194 | 13 | 16 | 293 | 23 | 331 | 7.88e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026336.t1 | AT4G33280 | 24.620 | 329 | 197 | 8 | 13 | 315 | 23 | 326 | 3.42e-16 | 78.6 |
| MS.gene026336.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 2.66e-14 | 71.2 |
| MS.gene026336.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 3.03e-14 | 70.9 |
| MS.gene026336.t1 | AT1G49475 | 36.036 | 111 | 69 | 2 | 15 | 125 | 34 | 142 | 6.44e-14 | 69.7 |
| MS.gene026336.t1 | AT4G01580 | 31.532 | 111 | 75 | 1 | 5 | 115 | 20 | 129 | 3.56e-13 | 67.4 |
Find 30 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1.1:-19880129 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1.1:+19880214 | MS.gene026336:CDS |
| TTTGGAAACCTTAGAGTAAC+TGG | 0.248158 | 1.1:-19878984 | None:intergenic |
| TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1.1:-19880325 | None:intergenic |
| CTTCATCATCACGCGGTAAA+AGG | 0.264439 | 1.1:+19879255 | MS.gene026336:CDS |
| CTCTTTAATGTGATTGTATT+CGG | 0.267780 | 1.1:+19879143 | MS.gene026336:CDS |
| TACTCTAAGGTTTCCAAACT+TGG | 0.337891 | 1.1:+19878989 | MS.gene026336:CDS |
| AAGTAGCTGTAATGATATTA+AGG | 0.342032 | 1.1:+19879515 | MS.gene026336:CDS |
| TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1.1:+19878976 | MS.gene026336:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1.1:-19880210 | None:intergenic |
| ATCAACTCGAATGAACAAAA+AGG | 0.376629 | 1.1:+19879323 | MS.gene026336:CDS |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1.1:-19880280 | None:intergenic |
| TGTTTCTTGACAAATTCATT+TGG | 0.414955 | 1.1:-19880073 | None:intergenic |
| TCTTCACTAGTTTCTCTTGA+AGG | 0.416839 | 1.1:-19879191 | None:intergenic |
| TGAATTTGTCAAGAAACATA+TGG | 0.468376 | 1.1:+19880078 | MS.gene026336:CDS |
| ATACATTGATAGAGATCTCT+TGG | 0.475972 | 1.1:+19879620 | MS.gene026336:CDS |
| TCTAAGGTTTCCAAACTTGG+TGG | 0.476134 | 1.1:+19878992 | MS.gene026336:CDS |
| CACACTTTCATAGACGGTGC+TGG | 0.484435 | 1.1:-19879287 | None:intergenic |
| CTTCACTAGTTTCTCTTGAA+GGG | 0.485568 | 1.1:-19879190 | None:intergenic |
| CAAGAAACATATGGACATGA+TGG | 0.508763 | 1.1:+19880087 | MS.gene026336:CDS |
| TTCTTACACACTTTCATAGA+CGG | 0.530584 | 1.1:-19879293 | None:intergenic |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1.1:+19878951 | MS.gene026336:CDS |
| GAACATGATCATCAGAGTAA+TGG | 0.556374 | 1.1:+19878457 | MS.gene026336:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1.1:+19880179 | MS.gene026336:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1.1:+19880175 | MS.gene026336:CDS |
| TTGGAAACCTTAGAGTAACT+GGG | 0.594864 | 1.1:-19878983 | None:intergenic |
| AAACATATGGACATGATGGA+AGG | 0.599445 | 1.1:+19880091 | MS.gene026336:CDS |
| GTGATTGTATTCGGTAAATG+CGG | 0.620340 | 1.1:+19879152 | MS.gene026336:CDS |
| AAGGATCTAAGCATGAGAAG+AGG | 0.639289 | 1.1:+19879342 | MS.gene026336:CDS |
| GAGAATCCTTCATCATCACG+CGG | 0.748401 | 1.1:+19879248 | MS.gene026336:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAAAAAATCTCATTA+TGG | - | chr1.1:19879835-19879854 | None:intergenic | 10.0% |
| !!! | AACAATTTATGAAAATTTTA+TGG | + | chr1.1:19880401-19880420 | MS.gene026336:intron | 10.0% |
| !!! | TATTTTTTGTCTTATTTTAT+AGG | + | chr1.1:19879445-19879464 | MS.gene026336:intron | 10.0% |
| !! | GGAAATTCATTTAATATAAT+GGG | + | chr1.1:19880365-19880384 | MS.gene026336:intron | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | - | chr1.1:19880328-19880347 | None:intergenic | 15.0% |
| !!! | TGAAATTATTAATCTAAAAC+AGG | + | chr1.1:19880045-19880064 | MS.gene026336:intron | 15.0% |
| !! | AAAATGTGATCTTATGATAT+TGG | + | chr1.1:19878727-19878746 | MS.gene026336:intron | 20.0% |
| !! | AATAGTGATTGTTCAAATAT+AGG | + | chr1.1:19878771-19878790 | MS.gene026336:intron | 20.0% |
| !! | AATCTCATTATGGTATAATT+TGG | - | chr1.1:19879825-19879844 | None:intergenic | 20.0% |
| !! | AGAAAAACAATTTCTTCATT+AGG | - | chr1.1:19878679-19878698 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1.1:19880132-19880151 | None:intergenic | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1.1:19880213-19880232 | None:intergenic | 20.0% |
| !! | CAAATATGCATTACAAAATT+TGG | + | chr1.1:19878575-19878594 | MS.gene026336:intron | 20.0% |
| !! | CAATATAATAATTCATGTGT+TGG | + | chr1.1:19880446-19880465 | MS.gene026336:intron | 20.0% |
| !! | CGGAAATTCATTTAATATAA+TGG | + | chr1.1:19880364-19880383 | MS.gene026336:intron | 20.0% |
| !! | GAAAAACAATTTCTTCATTA+GGG | - | chr1.1:19878678-19878697 | None:intergenic | 20.0% |
| !! | TATATTAAATGAATTTCCGA+TGG | - | chr1.1:19880363-19880382 | None:intergenic | 20.0% |
| !! | TTCAAGATAAAGTAGTTAAA+TGG | - | chr1.1:19880029-19880048 | None:intergenic | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1.1:19880131-19880150 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1.1:19880214-19880233 | MS.gene026336:CDS | 20.0% |
| !!! | TAAAATGTATGTGTATTGAT+AGG | + | chr1.1:19879991-19880010 | MS.gene026336:intron | 20.0% |
| !!! | TGATCACTTTTATTTTTGAA+AGG | + | chr1.1:19879660-19879679 | MS.gene026336:intron | 20.0% |
| !!! | TGTTGCTACTAATTTTTTTT+TGG | + | chr1.1:19879468-19879487 | MS.gene026336:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1.1:19879097-19879116 | MS.gene026336:CDS | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1.1:19880131-19880150 | MS.gene026336:CDS | 20.0% |
| ! | AAGTAGCTGTAATGATATTA+AGG | + | chr1.1:19879515-19879534 | MS.gene026336:CDS | 25.0% |
| ! | CAAAAAATTTCTTCACTTTC+TGG | - | chr1.1:19879560-19879579 | None:intergenic | 25.0% |
| ! | CTATTCTTTGATGAGATTAA+TGG | + | chr1.1:19879766-19879785 | MS.gene026336:intron | 25.0% |
| ! | CTCTTTAATGTGATTGTATT+CGG | + | chr1.1:19879143-19879162 | MS.gene026336:CDS | 25.0% |
| ! | GAAGAATAACCTTAAAAAAG+TGG | - | chr1.1:19878486-19878505 | None:intergenic | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1.1:19880283-19880302 | None:intergenic | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | + | chr1.1:19880344-19880363 | MS.gene026336:intron | 25.0% |
| ! | TGAATTTGTCAAGAAACATA+TGG | + | chr1.1:19880078-19880097 | MS.gene026336:CDS | 25.0% |
| ! | TGCATATTGTGAAAAATCAA+GGG | - | chr1.1:19878557-19878576 | None:intergenic | 25.0% |
| ! | TGTTTCTTGACAAATTCATT+TGG | - | chr1.1:19880076-19880095 | None:intergenic | 25.0% |
| ! | TTGCATATTGTGAAAAATCA+AGG | - | chr1.1:19878558-19878577 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | - | chr1.1:19878946-19878965 | None:intergenic | 25.0% |
| !! | TACCAATTTTTCTTCTTGAA+GGG | - | chr1.1:19878515-19878534 | None:intergenic | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | - | chr1.1:19878945-19878964 | None:intergenic | 25.0% |
| !! | TATGATGTTACATTTTGCAA+TGG | + | chr1.1:19879047-19879066 | MS.gene026336:CDS | 25.0% |
| !! | TTACCAATTTTTCTTCTTGA+AGG | - | chr1.1:19878516-19878535 | None:intergenic | 25.0% |
| !!! | GAATTCTCAATTTTTTTAGC+AGG | + | chr1.1:19879492-19879511 | MS.gene026336:intron | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1.1:19878946-19878965 | MS.gene026336:CDS | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1.1:19880285-19880304 | MS.gene026336:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1.1:19880291-19880310 | MS.gene026336:CDS | 25.0% |
| !!! | TTGAAAACTCCTTATTTTGA+AGG | + | chr1.1:19880316-19880335 | MS.gene026336:CDS | 25.0% |
| AGTGATTGTTCAAATATAGG+TGG | + | chr1.1:19878774-19878793 | MS.gene026336:intron | 30.0% | |
| ATACATTGATAGAGATCTCT+TGG | + | chr1.1:19879620-19879639 | MS.gene026336:CDS | 30.0% | |
| ATCAACTCGAATGAACAAAA+AGG | + | chr1.1:19879323-19879342 | MS.gene026336:CDS | 30.0% | |
| CCAATCACAATCTATTATGT+AGG | - | chr1.1:19879881-19879900 | None:intergenic | 30.0% | |
| CCTACATAATAGATTGTGAT+TGG | + | chr1.1:19879878-19879897 | MS.gene026336:intron | 30.0% | |
| TACCCTTCAAGAAGAAAAAT+TGG | + | chr1.1:19878510-19878529 | MS.gene026336:CDS | 30.0% | |
| TTCTTACACACTTTCATAGA+CGG | - | chr1.1:19879296-19879315 | None:intergenic | 30.0% | |
| ! | ATGTTACATTTTGCAATGGT+TGG | + | chr1.1:19879051-19879070 | MS.gene026336:CDS | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1.1:19880244-19880263 | MS.gene026336:CDS | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1.1:19878951-19878970 | MS.gene026336:CDS | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1.1:19879010-19879029 | MS.gene026336:CDS | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1.1:19878474-19878493 | MS.gene026336:CDS | 30.0% |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1.1:19879009-19879028 | MS.gene026336:CDS | 30.0% |
| AAACAATCTGCACTAACTTG+TGG | + | chr1.1:19880175-19880194 | MS.gene026336:CDS | 35.0% | |
| CAAGAAACATATGGACATGA+TGG | + | chr1.1:19880087-19880106 | MS.gene026336:CDS | 35.0% | |
| GAACATGATCATCAGAGTAA+TGG | + | chr1.1:19878457-19878476 | MS.gene026336:CDS | 35.0% | |
| GTGATTGTATTCGGTAAATG+CGG | + | chr1.1:19879152-19879171 | MS.gene026336:CDS | 35.0% | |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1.1:19878976-19878995 | MS.gene026336:CDS | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | - | chr1.1:19878986-19879005 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | - | chr1.1:19878987-19879006 | None:intergenic | 35.0% | |
| ! | AAACATATGGACATGATGGA+AGG | + | chr1.1:19880091-19880110 | MS.gene026336:CDS | 35.0% |
| ! | ACTTTCTTTTCCACCAAGTT+TGG | - | chr1.1:19879005-19879024 | None:intergenic | 35.0% |
| ! | CTTCACTAGTTTCTCTTGAA+GGG | - | chr1.1:19879193-19879212 | None:intergenic | 35.0% |
| ! | TCTTCACTAGTTTCTCTTGA+AGG | - | chr1.1:19879194-19879213 | None:intergenic | 35.0% |
| !! | GTTTTTGAGCATGTGAACAA+TGG | + | chr1.1:19879383-19879402 | MS.gene026336:CDS | 35.0% |
| !! | TACTCTAAGGTTTCCAAACT+TGG | + | chr1.1:19878989-19879008 | MS.gene026336:CDS | 35.0% |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1.1:19878940-19878959 | MS.gene026336:CDS | 35.0% |
| AAGGATCTAAGCATGAGAAG+AGG | + | chr1.1:19879342-19879361 | MS.gene026336:CDS | 40.0% | |
| TTGAGCATGTGAACAATGGT+TGG | + | chr1.1:19879387-19879406 | MS.gene026336:intron | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1.1:19880179-19880198 | MS.gene026336:CDS | 40.0% |
| ! | TCATGTGTTGGTCTATTGCA+GGG | + | chr1.1:19880458-19880477 | MS.gene026336:intron | 40.0% |
| ! | TCTAAGGTTTCCAAACTTGG+TGG | + | chr1.1:19878992-19879011 | MS.gene026336:CDS | 40.0% |
| ! | TTCATGTGTTGGTCTATTGC+AGG | + | chr1.1:19880457-19880476 | MS.gene026336:intron | 40.0% |
| ATTAGGGCTGCATCCAACAA+AGG | - | chr1.1:19878662-19878681 | None:intergenic | 45.0% | |
| CTTCATCATCACGCGGTAAA+AGG | + | chr1.1:19879255-19879274 | MS.gene026336:CDS | 45.0% | |
| GAGAATCCTTCATCATCACG+CGG | + | chr1.1:19879248-19879267 | MS.gene026336:CDS | 45.0% | |
| ! | CATCCAACAAAGGCTAGCTA+GGG | - | chr1.1:19878652-19878671 | None:intergenic | 45.0% |
| !! | CTTTTACCGCGTGATGATGA+AGG | - | chr1.1:19879257-19879276 | None:intergenic | 45.0% |
| CACACTTTCATAGACGGTGC+TGG | - | chr1.1:19879290-19879309 | None:intergenic | 50.0% | |
| ! | GCATCCAACAAAGGCTAGCT+AGG | - | chr1.1:19878653-19878672 | None:intergenic | 50.0% |
| ! | GTGTTGGTCTATTGCAGGGT+TGG | + | chr1.1:19880462-19880481 | MS.gene026336:intron | 50.0% |
| !! | CATCCCTAGCTAGCCTTTGT+TGG | + | chr1.1:19878646-19878665 | MS.gene026336:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 19878445 | 19880489 | 19878445 | ID=MS.gene026336 |
| chr1.1 | mRNA | 19878445 | 19880489 | 19878445 | ID=MS.gene026336.t1;Parent=MS.gene026336 |
| chr1.1 | exon | 19878445 | 19878531 | 19878445 | ID=MS.gene026336.t1.exon1;Parent=MS.gene026336.t1 |
| chr1.1 | CDS | 19878445 | 19878531 | 19878445 | ID=cds.MS.gene026336.t1;Parent=MS.gene026336.t1 |
| chr1.1 | exon | 19878936 | 19879404 | 19878936 | ID=MS.gene026336.t1.exon2;Parent=MS.gene026336.t1 |
| chr1.1 | CDS | 19878936 | 19879404 | 19878936 | ID=cds.MS.gene026336.t1;Parent=MS.gene026336.t1 |
| chr1.1 | exon | 19879511 | 19879641 | 19879511 | ID=MS.gene026336.t1.exon3;Parent=MS.gene026336.t1 |
| chr1.1 | CDS | 19879511 | 19879641 | 19879511 | ID=cds.MS.gene026336.t1;Parent=MS.gene026336.t1 |
| chr1.1 | exon | 19880067 | 19880337 | 19880067 | ID=MS.gene026336.t1.exon4;Parent=MS.gene026336.t1 |
| chr1.1 | CDS | 19880067 | 19880337 | 19880067 | ID=cds.MS.gene026336.t1;Parent=MS.gene026336.t1 |
| chr1.1 | exon | 19880479 | 19880489 | 19880479 | ID=MS.gene026336.t1.exon5;Parent=MS.gene026336.t1 |
| chr1.1 | CDS | 19880479 | 19880489 | 19880479 | ID=cds.MS.gene026336.t1;Parent=MS.gene026336.t1 |
| Gene Sequence |
| Protein sequence |
