Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026338.t1 | XP_024630392.1 | 86.6 | 322 | 26 | 3 | 1 | 322 | 1 | 305 | 1.00E-151 | 546.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026338.t1 | Q84R27 | 33.3 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 6.1e-12 | 73.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026338.t1 | A0A396JU70 | 86.6 | 320 | 26 | 3 | 1 | 320 | 1 | 303 | 6.2e-151 | 543.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026338.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026338.t1 | MTR_4g119990 | 65.854 | 328 | 98 | 7 | 1 | 319 | 1 | 323 | 7.78e-144 | 410 |
MS.gene026338.t1 | MTR_6g043890 | 65.574 | 305 | 91 | 6 | 1 | 299 | 1 | 297 | 5.17e-133 | 382 |
MS.gene026338.t1 | MTR_1g035440 | 59.259 | 243 | 73 | 4 | 1 | 217 | 1 | 243 | 1.59e-75 | 232 |
MS.gene026338.t1 | MTR_3g098790 | 30.293 | 307 | 191 | 8 | 9 | 307 | 7 | 298 | 3.81e-33 | 125 |
MS.gene026338.t1 | MTR_5g044670 | 30.499 | 341 | 194 | 14 | 1 | 322 | 1 | 317 | 4.85e-32 | 122 |
MS.gene026338.t1 | MTR_7g050720 | 29.206 | 315 | 195 | 9 | 13 | 307 | 8 | 314 | 1.89e-31 | 120 |
MS.gene026338.t1 | MTR_1g035460 | 29.605 | 304 | 186 | 9 | 31 | 316 | 2 | 295 | 2.35e-30 | 119 |
MS.gene026338.t1 | MTR_1g108780 | 26.897 | 290 | 196 | 7 | 31 | 312 | 13 | 294 | 9.64e-30 | 118 |
MS.gene026338.t1 | MTR_7g050710 | 28.846 | 312 | 162 | 9 | 13 | 293 | 11 | 293 | 1.14e-29 | 115 |
MS.gene026338.t1 | MTR_7g050560 | 29.268 | 287 | 176 | 7 | 13 | 293 | 11 | 276 | 2.52e-29 | 114 |
MS.gene026338.t1 | MTR_3g061370 | 28.065 | 310 | 181 | 10 | 9 | 307 | 3 | 281 | 7.31e-29 | 112 |
MS.gene026338.t1 | MTR_8g103940 | 26.045 | 311 | 215 | 8 | 13 | 316 | 37 | 339 | 2.99e-28 | 114 |
MS.gene026338.t1 | MTR_6g061070 | 27.327 | 333 | 209 | 12 | 9 | 319 | 12 | 333 | 8.96e-28 | 112 |
MS.gene026338.t1 | MTR_3g061350 | 28.758 | 306 | 176 | 11 | 13 | 307 | 10 | 284 | 9.06e-28 | 109 |
MS.gene026338.t1 | MTR_3g061320 | 27.869 | 305 | 175 | 10 | 13 | 307 | 10 | 279 | 2.23e-27 | 108 |
MS.gene026338.t1 | MTR_1g035570 | 29.392 | 296 | 176 | 8 | 24 | 301 | 14 | 294 | 3.12e-27 | 110 |
MS.gene026338.t1 | MTR_1g035640 | 30.225 | 311 | 179 | 13 | 24 | 322 | 14 | 298 | 1.70e-26 | 109 |
MS.gene026338.t1 | MTR_3g061310 | 28.947 | 304 | 179 | 10 | 13 | 307 | 10 | 285 | 1.97e-26 | 106 |
MS.gene026338.t1 | MTR_7g050580 | 29.514 | 288 | 174 | 7 | 13 | 293 | 11 | 276 | 2.10e-26 | 106 |
MS.gene026338.t1 | MTR_3g061340 | 28.814 | 295 | 163 | 12 | 15 | 300 | 12 | 268 | 9.79e-26 | 103 |
MS.gene026338.t1 | MTR_3g061330 | 27.344 | 256 | 151 | 8 | 13 | 262 | 10 | 236 | 4.25e-23 | 96.3 |
MS.gene026338.t1 | MTR_1g033740 | 32.178 | 202 | 102 | 8 | 1 | 180 | 1 | 189 | 3.77e-22 | 92.4 |
MS.gene026338.t1 | MTR_1g035620 | 28.328 | 293 | 164 | 10 | 15 | 295 | 9 | 267 | 7.29e-22 | 95.5 |
MS.gene026338.t1 | MTR_7g050590 | 28.723 | 282 | 165 | 10 | 31 | 293 | 2 | 266 | 1.57e-21 | 93.2 |
MS.gene026338.t1 | MTR_1g035480 | 33.702 | 181 | 94 | 7 | 1 | 167 | 1 | 169 | 3.73e-21 | 89.4 |
MS.gene026338.t1 | MTR_3g061290 | 38.000 | 150 | 81 | 7 | 13 | 153 | 10 | 156 | 1.02e-20 | 88.6 |
MS.gene026338.t1 | MTR_1g050845 | 27.875 | 287 | 161 | 8 | 15 | 295 | 9 | 255 | 2.88e-20 | 92.0 |
MS.gene026338.t1 | MTR_1g035510 | 30.088 | 226 | 121 | 9 | 31 | 242 | 2 | 204 | 6.95e-20 | 87.0 |
MS.gene026338.t1 | MTR_1g035500 | 33.136 | 169 | 90 | 6 | 9 | 165 | 19 | 176 | 1.68e-19 | 85.1 |
MS.gene026338.t1 | MTR_3g005490 | 27.063 | 303 | 148 | 11 | 14 | 307 | 20 | 258 | 4.58e-19 | 85.5 |
MS.gene026338.t1 | MTR_1g035520 | 28.296 | 311 | 169 | 12 | 31 | 307 | 88 | 378 | 1.27e-18 | 85.9 |
MS.gene026338.t1 | MTR_3g005480 | 35.965 | 114 | 66 | 2 | 14 | 124 | 20 | 129 | 1.18e-16 | 79.0 |
MS.gene026338.t1 | MTR_5g070440 | 27.703 | 296 | 164 | 11 | 14 | 307 | 20 | 267 | 1.47e-16 | 78.6 |
MS.gene026338.t1 | MTR_1g021380 | 27.653 | 311 | 183 | 12 | 13 | 293 | 20 | 318 | 2.96e-16 | 79.0 |
MS.gene026338.t1 | MTR_1g035470 | 40.625 | 96 | 53 | 3 | 31 | 126 | 2 | 93 | 8.43e-16 | 73.6 |
MS.gene026338.t1 | MTR_3g005460 | 25.352 | 284 | 169 | 9 | 13 | 293 | 260 | 503 | 1.47e-15 | 77.4 |
MS.gene026338.t1 | MTR_3g005460 | 23.762 | 303 | 141 | 9 | 14 | 305 | 24 | 247 | 1.53e-13 | 71.6 |
MS.gene026338.t1 | MTR_1g035650 | 30.464 | 151 | 98 | 3 | 15 | 165 | 9 | 152 | 2.30e-14 | 71.2 |
MS.gene026338.t1 | MTR_3g005495 | 30.636 | 173 | 106 | 4 | 14 | 175 | 242 | 411 | 3.36e-14 | 73.6 |
MS.gene026338.t1 | MTR_3g005495 | 24.316 | 329 | 203 | 13 | 31 | 320 | 29 | 350 | 1.64e-11 | 65.1 |
MS.gene026338.t1 | MTR_1g021360 | 26.780 | 295 | 158 | 12 | 26 | 293 | 193 | 456 | 1.34e-13 | 71.6 |
MS.gene026338.t1 | MTR_3g005420 | 24.415 | 299 | 170 | 10 | 14 | 307 | 288 | 535 | 1.25e-12 | 68.9 |
MS.gene026338.t1 | MTR_1g021400 | 24.159 | 327 | 186 | 11 | 13 | 293 | 28 | 338 | 2.74e-12 | 67.4 |
MS.gene026338.t1 | MTR_3g061220 | 30.909 | 110 | 60 | 2 | 13 | 122 | 10 | 103 | 2.41e-11 | 60.5 |
MS.gene026338.t1 | MTR_4g068320 | 35.135 | 111 | 69 | 2 | 15 | 123 | 6 | 115 | 5.56e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026338.t1 | AT4G33280 | 24.316 | 329 | 198 | 8 | 13 | 315 | 23 | 326 | 1.90e-15 | 76.3 |
MS.gene026338.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 2.64e-14 | 71.2 |
MS.gene026338.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 2.74e-14 | 70.9 |
MS.gene026338.t1 | AT1G49475 | 36.036 | 111 | 69 | 2 | 15 | 125 | 34 | 142 | 5.55e-14 | 69.7 |
MS.gene026338.t1 | AT4G01580 | 31.532 | 111 | 75 | 1 | 5 | 115 | 20 | 129 | 3.20e-13 | 67.8 |
Find 31 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1.1:-19902543 | None:intergenic |
GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1.1:+19902628 | MS.gene026338:CDS |
TTTGGAAACCTTAGAGTAAC+TGG | 0.248158 | 1.1:-19901398 | None:intergenic |
TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1.1:-19902739 | None:intergenic |
CTTCATCATCACGCGGTAAA+AGG | 0.264439 | 1.1:+19901669 | MS.gene026338:CDS |
CTCTTTAATGTGATTGTATT+CGG | 0.267780 | 1.1:+19901557 | MS.gene026338:CDS |
TACTCTAAGGTTTCCAAACT+TGG | 0.337891 | 1.1:+19901403 | MS.gene026338:CDS |
AAGTAGCTGTAATGATATTA+AGG | 0.342032 | 1.1:+19901929 | MS.gene026338:CDS |
TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1.1:+19901390 | MS.gene026338:CDS |
ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1.1:-19902624 | None:intergenic |
ATCAACTCGAATGAACAAAA+AGG | 0.376629 | 1.1:+19901737 | MS.gene026338:CDS |
GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1.1:-19902694 | None:intergenic |
TGTTTCTTGACAAATTCATT+TGG | 0.414955 | 1.1:-19902487 | None:intergenic |
TCTTCACTAGTTTCTCTTGA+AGG | 0.416839 | 1.1:-19901605 | None:intergenic |
TGAATTTGTCAAGAAACATA+TGG | 0.468376 | 1.1:+19902492 | MS.gene026338:CDS |
ATACATTGATAGAGATCTCT+TGG | 0.475972 | 1.1:+19902034 | MS.gene026338:CDS |
TCTAAGGTTTCCAAACTTGG+TGG | 0.476134 | 1.1:+19901406 | MS.gene026338:CDS |
CACACTTTCATAGACGGTGC+TGG | 0.484435 | 1.1:-19901701 | None:intergenic |
CTTCACTAGTTTCTCTTGAA+GGG | 0.485568 | 1.1:-19901604 | None:intergenic |
TTAGCATCATACATGCAAAA+AGG | 0.493064 | 1.1:-19902007 | None:intergenic |
CAAGAAACATATGGACATGA+TGG | 0.508763 | 1.1:+19902501 | MS.gene026338:CDS |
TTCTTACACACTTTCATAGA+CGG | 0.530584 | 1.1:-19901707 | None:intergenic |
TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1.1:+19901365 | MS.gene026338:CDS |
GAACATGATCATCAGAGTAA+TGG | 0.556374 | 1.1:+19900871 | MS.gene026338:CDS |
AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1.1:+19902593 | MS.gene026338:CDS |
AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1.1:+19902589 | MS.gene026338:CDS |
TTGGAAACCTTAGAGTAACT+GGG | 0.594864 | 1.1:-19901397 | None:intergenic |
AAACATATGGACATGATGGA+AGG | 0.599445 | 1.1:+19902505 | MS.gene026338:CDS |
GTGATTGTATTCGGTAAATG+CGG | 0.620340 | 1.1:+19901566 | MS.gene026338:CDS |
AAGGATCTAAGCATGAGAAG+AGG | 0.639289 | 1.1:+19901756 | MS.gene026338:CDS |
GAGAATCCTTCATCATCACG+CGG | 0.748401 | 1.1:+19901662 | MS.gene026338:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AACAATTTATGAAAATTTTA+TGG | + | chr1.1:19902815-19902834 | MS.gene026338:intron | 10.0% |
!!! | TATTTTTTGTCTTATTTTAT+AGG | + | chr1.1:19901859-19901878 | MS.gene026338:intron | 10.0% |
!! | AATATAAAAAAGTCTCATTA+TGG | - | chr1.1:19902248-19902267 | None:intergenic | 15.0% |
!! | GGAAATTCATTTAATATAAT+GGG | + | chr1.1:19902779-19902798 | MS.gene026338:intron | 15.0% |
!! | TATAATTTACCTTCAAAATA+AGG | - | chr1.1:19902742-19902761 | None:intergenic | 15.0% |
!!! | TGAAATTATTAATCTAAAAC+AGG | + | chr1.1:19902459-19902478 | MS.gene026338:intron | 15.0% |
!! | AAAATGTGATCTTATGATAT+TGG | + | chr1.1:19901141-19901160 | MS.gene026338:intron | 20.0% |
!! | AATAGTGATTGTTCAAATAT+AGG | + | chr1.1:19901185-19901204 | MS.gene026338:intron | 20.0% |
!! | AGAAAAACAATTTCTTCATT+AGG | - | chr1.1:19901093-19901112 | None:intergenic | 20.0% |
!! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1.1:19902546-19902565 | None:intergenic | 20.0% |
!! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1.1:19902627-19902646 | None:intergenic | 20.0% |
!! | CAAATATGCATTACAAAATT+TGG | + | chr1.1:19900989-19901008 | MS.gene026338:intron | 20.0% |
!! | CAATATAATAATTCATGTGT+TGG | + | chr1.1:19902860-19902879 | MS.gene026338:intron | 20.0% |
!! | CGGAAATTCATTTAATATAA+TGG | + | chr1.1:19902778-19902797 | MS.gene026338:intron | 20.0% |
!! | GAAAAACAATTTCTTCATTA+GGG | - | chr1.1:19901092-19901111 | None:intergenic | 20.0% |
!! | TATATTAAATGAATTTCCGA+TGG | - | chr1.1:19902777-19902796 | None:intergenic | 20.0% |
!! | TTCAAGATAAAGTAGTTAAA+TGG | - | chr1.1:19902443-19902462 | None:intergenic | 20.0% |
!! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1.1:19902545-19902564 | None:intergenic | 20.0% |
!!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1.1:19902628-19902647 | MS.gene026338:CDS | 20.0% |
!!! | TAAAATGTATGTGTATTGAT+AGG | + | chr1.1:19902405-19902424 | MS.gene026338:intron | 20.0% |
!!! | TGATCACTTTTATTTTTGAA+AGG | + | chr1.1:19902074-19902093 | MS.gene026338:intron | 20.0% |
!!! | TGTTGCTACTAATTTTTTTT+TGG | + | chr1.1:19901882-19901901 | MS.gene026338:intron | 20.0% |
!!! | TTTGAATGAATCACAATTTT+TGG | + | chr1.1:19901511-19901530 | MS.gene026338:CDS | 20.0% |
!!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1.1:19902545-19902564 | MS.gene026338:CDS | 20.0% |
! | AAGTAGCTGTAATGATATTA+AGG | + | chr1.1:19901929-19901948 | MS.gene026338:CDS | 25.0% |
! | AGTCTCATTATGGTATAATT+TGG | - | chr1.1:19902238-19902257 | None:intergenic | 25.0% |
! | CAAAAAATTTCTTCACTTTC+TGG | - | chr1.1:19901974-19901993 | None:intergenic | 25.0% |
! | CTATTCTTTGATGAGATTAA+TGG | + | chr1.1:19902180-19902199 | MS.gene026338:intron | 25.0% |
! | CTCTTTAATGTGATTGTATT+CGG | + | chr1.1:19901557-19901576 | MS.gene026338:CDS | 25.0% |
! | GAAGAATAACCTTAAAAAAG+TGG | - | chr1.1:19900900-19900919 | None:intergenic | 25.0% |
! | GAGAAAATAACAACTTGAAA+TGG | - | chr1.1:19902697-19902716 | None:intergenic | 25.0% |
! | TATATTTGATTAGTGTCCAT+CGG | + | chr1.1:19902758-19902777 | MS.gene026338:intron | 25.0% |
! | TGAATTTGTCAAGAAACATA+TGG | + | chr1.1:19902492-19902511 | MS.gene026338:CDS | 25.0% |
! | TGCATATTGTGAAAAATCAA+GGG | - | chr1.1:19900971-19900990 | None:intergenic | 25.0% |
! | TGTTTCTTGACAAATTCATT+TGG | - | chr1.1:19902490-19902509 | None:intergenic | 25.0% |
! | TTGCATATTGTGAAAAATCA+AGG | - | chr1.1:19900972-19900991 | None:intergenic | 25.0% |
!! | ATACCTTTTCACAAAACTTA+TGG | - | chr1.1:19901360-19901379 | None:intergenic | 25.0% |
!! | TACCAATTTTTCTTCTTGAA+GGG | - | chr1.1:19900929-19900948 | None:intergenic | 25.0% |
!! | TACCTTTTCACAAAACTTAT+GGG | - | chr1.1:19901359-19901378 | None:intergenic | 25.0% |
!! | TATGATGTTACATTTTGCAA+TGG | + | chr1.1:19901461-19901480 | MS.gene026338:CDS | 25.0% |
!! | TTACCAATTTTTCTTCTTGA+AGG | - | chr1.1:19900930-19900949 | None:intergenic | 25.0% |
!!! | GAATTCTCAATTTTTTTAGC+AGG | + | chr1.1:19901906-19901925 | MS.gene026338:intron | 25.0% |
!!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1.1:19901360-19901379 | MS.gene026338:CDS | 25.0% |
!!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1.1:19902699-19902718 | MS.gene026338:CDS | 25.0% |
!!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1.1:19902705-19902724 | MS.gene026338:CDS | 25.0% |
!!! | TTGAAAACTCCTTATTTTGA+AGG | + | chr1.1:19902730-19902749 | MS.gene026338:CDS | 25.0% |
AGTGATTGTTCAAATATAGG+TGG | + | chr1.1:19901188-19901207 | MS.gene026338:intron | 30.0% | |
ATACATTGATAGAGATCTCT+TGG | + | chr1.1:19902034-19902053 | MS.gene026338:CDS | 30.0% | |
ATCAACTCGAATGAACAAAA+AGG | + | chr1.1:19901737-19901756 | MS.gene026338:CDS | 30.0% | |
CCAATCACAATCTATTATGT+AGG | - | chr1.1:19902295-19902314 | None:intergenic | 30.0% | |
CCTACATAATAGATTGTGAT+TGG | + | chr1.1:19902292-19902311 | MS.gene026338:intron | 30.0% | |
TACCCTTCAAGAAGAAAAAT+TGG | + | chr1.1:19900924-19900943 | MS.gene026338:CDS | 30.0% | |
TTAGCATCATACATGCAAAA+AGG | - | chr1.1:19902010-19902029 | None:intergenic | 30.0% | |
TTCTTACACACTTTCATAGA+CGG | - | chr1.1:19901710-19901729 | None:intergenic | 30.0% | |
! | ATGTTACATTTTGCAATGGT+TGG | + | chr1.1:19901465-19901484 | MS.gene026338:CDS | 30.0% |
!! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1.1:19902658-19902677 | MS.gene026338:CDS | 30.0% |
!! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1.1:19901365-19901384 | MS.gene026338:CDS | 30.0% |
!!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1.1:19901424-19901443 | MS.gene026338:CDS | 30.0% |
!!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1.1:19900888-19900907 | MS.gene026338:CDS | 30.0% |
!!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1.1:19901423-19901442 | MS.gene026338:CDS | 30.0% |
AAACAATCTGCACTAACTTG+TGG | + | chr1.1:19902589-19902608 | MS.gene026338:CDS | 35.0% | |
CAAGAAACATATGGACATGA+TGG | + | chr1.1:19902501-19902520 | MS.gene026338:CDS | 35.0% | |
GAACATGATCATCAGAGTAA+TGG | + | chr1.1:19900871-19900890 | MS.gene026338:CDS | 35.0% | |
GTGATTGTATTCGGTAAATG+CGG | + | chr1.1:19901566-19901585 | MS.gene026338:CDS | 35.0% | |
TAACAAACCCAGTTACTCTA+AGG | + | chr1.1:19901390-19901409 | MS.gene026338:CDS | 35.0% | |
TTGGAAACCTTAGAGTAACT+GGG | - | chr1.1:19901400-19901419 | None:intergenic | 35.0% | |
TTTGGAAACCTTAGAGTAAC+TGG | - | chr1.1:19901401-19901420 | None:intergenic | 35.0% | |
! | AAACATATGGACATGATGGA+AGG | + | chr1.1:19902505-19902524 | MS.gene026338:CDS | 35.0% |
! | ACTTTCTTTTCCACCAAGTT+TGG | - | chr1.1:19901419-19901438 | None:intergenic | 35.0% |
! | CTTCACTAGTTTCTCTTGAA+GGG | - | chr1.1:19901607-19901626 | None:intergenic | 35.0% |
! | TCTTCACTAGTTTCTCTTGA+AGG | - | chr1.1:19901608-19901627 | None:intergenic | 35.0% |
!! | GTTTTTGAGCATGTGAACAA+TGG | + | chr1.1:19901797-19901816 | MS.gene026338:CDS | 35.0% |
!! | TACTCTAAGGTTTCCAAACT+TGG | + | chr1.1:19901403-19901422 | MS.gene026338:CDS | 35.0% |
!! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1.1:19901354-19901373 | MS.gene026338:CDS | 35.0% |
AAGGATCTAAGCATGAGAAG+AGG | + | chr1.1:19901756-19901775 | MS.gene026338:CDS | 40.0% | |
TTGAGCATGTGAACAATGGT+TGG | + | chr1.1:19901801-19901820 | MS.gene026338:intron | 40.0% | |
! | AATCTGCACTAACTTGTGGT+TGG | + | chr1.1:19902593-19902612 | MS.gene026338:CDS | 40.0% |
! | TCATGTGTTGGTCTATTGCA+GGG | + | chr1.1:19902872-19902891 | MS.gene026338:intron | 40.0% |
! | TCTAAGGTTTCCAAACTTGG+TGG | + | chr1.1:19901406-19901425 | MS.gene026338:CDS | 40.0% |
! | TTCATGTGTTGGTCTATTGC+AGG | + | chr1.1:19902871-19902890 | MS.gene026338:intron | 40.0% |
ATTAGGGCTGCATCCAACAA+AGG | - | chr1.1:19901076-19901095 | None:intergenic | 45.0% | |
CTTCATCATCACGCGGTAAA+AGG | + | chr1.1:19901669-19901688 | MS.gene026338:CDS | 45.0% | |
GAGAATCCTTCATCATCACG+CGG | + | chr1.1:19901662-19901681 | MS.gene026338:CDS | 45.0% | |
! | CATCCAACAAAGGCTAGCTA+GGG | - | chr1.1:19901066-19901085 | None:intergenic | 45.0% |
!! | CTTTTACCGCGTGATGATGA+AGG | - | chr1.1:19901671-19901690 | None:intergenic | 45.0% |
CACACTTTCATAGACGGTGC+TGG | - | chr1.1:19901704-19901723 | None:intergenic | 50.0% | |
! | GCATCCAACAAAGGCTAGCT+AGG | - | chr1.1:19901067-19901086 | None:intergenic | 50.0% |
! | GTGTTGGTCTATTGCAGGGT+TGG | + | chr1.1:19902876-19902895 | MS.gene026338:intron | 50.0% |
!! | CATCCCTAGCTAGCCTTTGT+TGG | + | chr1.1:19901060-19901079 | MS.gene026338:intron | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 19900859 | 19902903 | 19900859 | ID=MS.gene026338 |
chr1.1 | mRNA | 19900859 | 19902903 | 19900859 | ID=MS.gene026338.t1;Parent=MS.gene026338 |
chr1.1 | exon | 19900859 | 19900945 | 19900859 | ID=MS.gene026338.t1.exon1;Parent=MS.gene026338.t1 |
chr1.1 | CDS | 19900859 | 19900945 | 19900859 | ID=cds.MS.gene026338.t1;Parent=MS.gene026338.t1 |
chr1.1 | exon | 19901350 | 19901818 | 19901350 | ID=MS.gene026338.t1.exon2;Parent=MS.gene026338.t1 |
chr1.1 | CDS | 19901350 | 19901818 | 19901350 | ID=cds.MS.gene026338.t1;Parent=MS.gene026338.t1 |
chr1.1 | exon | 19901925 | 19902055 | 19901925 | ID=MS.gene026338.t1.exon3;Parent=MS.gene026338.t1 |
chr1.1 | CDS | 19901925 | 19902055 | 19901925 | ID=cds.MS.gene026338.t1;Parent=MS.gene026338.t1 |
chr1.1 | exon | 19902481 | 19902751 | 19902481 | ID=MS.gene026338.t1.exon4;Parent=MS.gene026338.t1 |
chr1.1 | CDS | 19902481 | 19902751 | 19902481 | ID=cds.MS.gene026338.t1;Parent=MS.gene026338.t1 |
chr1.1 | exon | 19902893 | 19902903 | 19902893 | ID=MS.gene026338.t1.exon5;Parent=MS.gene026338.t1 |
chr1.1 | CDS | 19902893 | 19902903 | 19902893 | ID=cds.MS.gene026338.t1;Parent=MS.gene026338.t1 |
Gene Sequence |
Protein sequence |