Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026339.t1 | XP_024630392.1 | 86.6 | 322 | 26 | 3 | 1 | 322 | 1 | 305 | 1.00E-151 | 546.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026339.t1 | Q84R27 | 33.3 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 6.1e-12 | 73.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026339.t1 | A0A396JU70 | 86.6 | 320 | 26 | 3 | 1 | 320 | 1 | 303 | 6.2e-151 | 543.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene026339.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026339.t1 | MTR_4g119990 | 65.854 | 328 | 98 | 7 | 1 | 319 | 1 | 323 | 7.78e-144 | 410 |
| MS.gene026339.t1 | MTR_6g043890 | 65.574 | 305 | 91 | 6 | 1 | 299 | 1 | 297 | 5.17e-133 | 382 |
| MS.gene026339.t1 | MTR_1g035440 | 59.259 | 243 | 73 | 4 | 1 | 217 | 1 | 243 | 1.59e-75 | 232 |
| MS.gene026339.t1 | MTR_3g098790 | 30.293 | 307 | 191 | 8 | 9 | 307 | 7 | 298 | 3.81e-33 | 125 |
| MS.gene026339.t1 | MTR_5g044670 | 30.499 | 341 | 194 | 14 | 1 | 322 | 1 | 317 | 4.85e-32 | 122 |
| MS.gene026339.t1 | MTR_7g050720 | 29.206 | 315 | 195 | 9 | 13 | 307 | 8 | 314 | 1.89e-31 | 120 |
| MS.gene026339.t1 | MTR_1g035460 | 29.605 | 304 | 186 | 9 | 31 | 316 | 2 | 295 | 2.35e-30 | 119 |
| MS.gene026339.t1 | MTR_1g108780 | 26.897 | 290 | 196 | 7 | 31 | 312 | 13 | 294 | 9.64e-30 | 118 |
| MS.gene026339.t1 | MTR_7g050710 | 28.846 | 312 | 162 | 9 | 13 | 293 | 11 | 293 | 1.14e-29 | 115 |
| MS.gene026339.t1 | MTR_7g050560 | 29.268 | 287 | 176 | 7 | 13 | 293 | 11 | 276 | 2.52e-29 | 114 |
| MS.gene026339.t1 | MTR_3g061370 | 28.065 | 310 | 181 | 10 | 9 | 307 | 3 | 281 | 7.31e-29 | 112 |
| MS.gene026339.t1 | MTR_8g103940 | 26.045 | 311 | 215 | 8 | 13 | 316 | 37 | 339 | 2.99e-28 | 114 |
| MS.gene026339.t1 | MTR_6g061070 | 27.327 | 333 | 209 | 12 | 9 | 319 | 12 | 333 | 8.96e-28 | 112 |
| MS.gene026339.t1 | MTR_3g061350 | 28.758 | 306 | 176 | 11 | 13 | 307 | 10 | 284 | 9.06e-28 | 109 |
| MS.gene026339.t1 | MTR_3g061320 | 27.869 | 305 | 175 | 10 | 13 | 307 | 10 | 279 | 2.23e-27 | 108 |
| MS.gene026339.t1 | MTR_1g035570 | 29.392 | 296 | 176 | 8 | 24 | 301 | 14 | 294 | 3.12e-27 | 110 |
| MS.gene026339.t1 | MTR_1g035640 | 30.225 | 311 | 179 | 13 | 24 | 322 | 14 | 298 | 1.70e-26 | 109 |
| MS.gene026339.t1 | MTR_3g061310 | 28.947 | 304 | 179 | 10 | 13 | 307 | 10 | 285 | 1.97e-26 | 106 |
| MS.gene026339.t1 | MTR_7g050580 | 29.514 | 288 | 174 | 7 | 13 | 293 | 11 | 276 | 2.10e-26 | 106 |
| MS.gene026339.t1 | MTR_3g061340 | 28.814 | 295 | 163 | 12 | 15 | 300 | 12 | 268 | 9.79e-26 | 103 |
| MS.gene026339.t1 | MTR_3g061330 | 27.344 | 256 | 151 | 8 | 13 | 262 | 10 | 236 | 4.25e-23 | 96.3 |
| MS.gene026339.t1 | MTR_1g033740 | 32.178 | 202 | 102 | 8 | 1 | 180 | 1 | 189 | 3.77e-22 | 92.4 |
| MS.gene026339.t1 | MTR_1g035620 | 28.328 | 293 | 164 | 10 | 15 | 295 | 9 | 267 | 7.29e-22 | 95.5 |
| MS.gene026339.t1 | MTR_7g050590 | 28.723 | 282 | 165 | 10 | 31 | 293 | 2 | 266 | 1.57e-21 | 93.2 |
| MS.gene026339.t1 | MTR_1g035480 | 33.702 | 181 | 94 | 7 | 1 | 167 | 1 | 169 | 3.73e-21 | 89.4 |
| MS.gene026339.t1 | MTR_3g061290 | 38.000 | 150 | 81 | 7 | 13 | 153 | 10 | 156 | 1.02e-20 | 88.6 |
| MS.gene026339.t1 | MTR_1g050845 | 27.875 | 287 | 161 | 8 | 15 | 295 | 9 | 255 | 2.88e-20 | 92.0 |
| MS.gene026339.t1 | MTR_1g035510 | 30.088 | 226 | 121 | 9 | 31 | 242 | 2 | 204 | 6.95e-20 | 87.0 |
| MS.gene026339.t1 | MTR_1g035500 | 33.136 | 169 | 90 | 6 | 9 | 165 | 19 | 176 | 1.68e-19 | 85.1 |
| MS.gene026339.t1 | MTR_3g005490 | 27.063 | 303 | 148 | 11 | 14 | 307 | 20 | 258 | 4.58e-19 | 85.5 |
| MS.gene026339.t1 | MTR_1g035520 | 28.296 | 311 | 169 | 12 | 31 | 307 | 88 | 378 | 1.27e-18 | 85.9 |
| MS.gene026339.t1 | MTR_3g005480 | 35.965 | 114 | 66 | 2 | 14 | 124 | 20 | 129 | 1.18e-16 | 79.0 |
| MS.gene026339.t1 | MTR_5g070440 | 27.703 | 296 | 164 | 11 | 14 | 307 | 20 | 267 | 1.47e-16 | 78.6 |
| MS.gene026339.t1 | MTR_1g021380 | 27.653 | 311 | 183 | 12 | 13 | 293 | 20 | 318 | 2.96e-16 | 79.0 |
| MS.gene026339.t1 | MTR_1g035470 | 40.625 | 96 | 53 | 3 | 31 | 126 | 2 | 93 | 8.43e-16 | 73.6 |
| MS.gene026339.t1 | MTR_3g005460 | 25.352 | 284 | 169 | 9 | 13 | 293 | 260 | 503 | 1.47e-15 | 77.4 |
| MS.gene026339.t1 | MTR_3g005460 | 23.762 | 303 | 141 | 9 | 14 | 305 | 24 | 247 | 1.53e-13 | 71.6 |
| MS.gene026339.t1 | MTR_1g035650 | 30.464 | 151 | 98 | 3 | 15 | 165 | 9 | 152 | 2.30e-14 | 71.2 |
| MS.gene026339.t1 | MTR_3g005495 | 30.636 | 173 | 106 | 4 | 14 | 175 | 242 | 411 | 3.36e-14 | 73.6 |
| MS.gene026339.t1 | MTR_3g005495 | 24.316 | 329 | 203 | 13 | 31 | 320 | 29 | 350 | 1.64e-11 | 65.1 |
| MS.gene026339.t1 | MTR_1g021360 | 26.780 | 295 | 158 | 12 | 26 | 293 | 193 | 456 | 1.34e-13 | 71.6 |
| MS.gene026339.t1 | MTR_3g005420 | 24.415 | 299 | 170 | 10 | 14 | 307 | 288 | 535 | 1.25e-12 | 68.9 |
| MS.gene026339.t1 | MTR_1g021400 | 24.159 | 327 | 186 | 11 | 13 | 293 | 28 | 338 | 2.74e-12 | 67.4 |
| MS.gene026339.t1 | MTR_3g061220 | 30.909 | 110 | 60 | 2 | 13 | 122 | 10 | 103 | 2.41e-11 | 60.5 |
| MS.gene026339.t1 | MTR_4g068320 | 35.135 | 111 | 69 | 2 | 15 | 123 | 6 | 115 | 5.56e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026339.t1 | AT4G33280 | 24.316 | 329 | 198 | 8 | 13 | 315 | 23 | 326 | 1.90e-15 | 76.3 |
| MS.gene026339.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 2.64e-14 | 71.2 |
| MS.gene026339.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 2.74e-14 | 70.9 |
| MS.gene026339.t1 | AT1G49475 | 36.036 | 111 | 69 | 2 | 15 | 125 | 34 | 142 | 5.55e-14 | 69.7 |
| MS.gene026339.t1 | AT4G01580 | 31.532 | 111 | 75 | 1 | 5 | 115 | 20 | 129 | 3.20e-13 | 67.8 |
Find 31 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1.1:+19866830 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1.1:-19866745 | MS.gene026339:CDS |
| TTTGGAAACCTTAGAGTAAC+TGG | 0.248158 | 1.1:+19867975 | None:intergenic |
| TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1.1:+19866634 | None:intergenic |
| CTTCATCATCACGCGGTAAA+AGG | 0.264439 | 1.1:-19867704 | MS.gene026339:CDS |
| CTCTTTAATGTGATTGTATT+CGG | 0.267780 | 1.1:-19867816 | MS.gene026339:CDS |
| TACTCTAAGGTTTCCAAACT+TGG | 0.337891 | 1.1:-19867970 | MS.gene026339:CDS |
| AAGTAGCTGTAATGATATTA+AGG | 0.342032 | 1.1:-19867444 | MS.gene026339:CDS |
| TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1.1:-19867983 | MS.gene026339:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1.1:+19866749 | None:intergenic |
| ATCAACTCGAATGAACAAAA+AGG | 0.376629 | 1.1:-19867636 | MS.gene026339:CDS |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1.1:+19866679 | None:intergenic |
| TGTTTCTTGACAAATTCATT+TGG | 0.414955 | 1.1:+19866886 | None:intergenic |
| TCTTCACTAGTTTCTCTTGA+AGG | 0.416839 | 1.1:+19867768 | None:intergenic |
| TGAATTTGTCAAGAAACATA+TGG | 0.468376 | 1.1:-19866881 | MS.gene026339:CDS |
| ATACATTGATAGAGATCTCT+TGG | 0.475972 | 1.1:-19867339 | MS.gene026339:intron |
| TCTAAGGTTTCCAAACTTGG+TGG | 0.476134 | 1.1:-19867967 | MS.gene026339:CDS |
| CACACTTTCATAGACGGTGC+TGG | 0.484435 | 1.1:+19867672 | None:intergenic |
| CTTCACTAGTTTCTCTTGAA+GGG | 0.485568 | 1.1:+19867769 | None:intergenic |
| TTAGCATCATACATGCAAAA+AGG | 0.493064 | 1.1:+19867366 | None:intergenic |
| CAAGAAACATATGGACATGA+TGG | 0.508763 | 1.1:-19866872 | MS.gene026339:CDS |
| TTCTTACACACTTTCATAGA+CGG | 0.530584 | 1.1:+19867666 | None:intergenic |
| AATCTGCTCTAACTTGTGGT+TGG | 0.542067 | 1.1:-19866780 | MS.gene026339:CDS |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1.1:-19868008 | MS.gene026339:CDS |
| GAACATGATCATCAGAGTAA+TGG | 0.556374 | 1.1:-19868502 | MS.gene026339:CDS |
| AAACAATCTGCTCTAACTTG+TGG | 0.593960 | 1.1:-19866784 | MS.gene026339:CDS |
| TTGGAAACCTTAGAGTAACT+GGG | 0.594864 | 1.1:+19867976 | None:intergenic |
| AAACATATGGACATGATGGA+AGG | 0.599445 | 1.1:-19866868 | MS.gene026339:CDS |
| GTGATTGTATTCGGTAAATG+CGG | 0.620340 | 1.1:-19867807 | MS.gene026339:CDS |
| AAGGATCTAAGCATGAGAAG+AGG | 0.639289 | 1.1:-19867617 | MS.gene026339:CDS |
| GAGAATCCTTCATCATCACG+CGG | 0.748401 | 1.1:-19867711 | MS.gene026339:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATTTATGAAAATTTTA+TGG | - | chr1.1:19868448-19868467 | MS.gene026339:intron | 10.0% |
| !!! | TATTTTTTGTCTTATTTTAT+AGG | - | chr1.1:19867492-19867511 | MS.gene026339:intron | 10.0% |
| !! | AATATAAAAAAGTCTCATTA+TGG | + | chr1.1:19867881-19867900 | None:intergenic | 15.0% |
| !! | GGAAATTCATTTAATATAAT+GGG | - | chr1.1:19868412-19868431 | MS.gene026339:intron | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | + | chr1.1:19868375-19868394 | None:intergenic | 15.0% |
| !!! | TGAAATTATTAATCTAAAAC+AGG | - | chr1.1:19868092-19868111 | MS.gene026339:intron | 15.0% |
| !! | AAAATGTGATCTTATGATAT+TGG | - | chr1.1:19866774-19866793 | MS.gene026339:CDS | 20.0% |
| !! | AATAGTGATTGTTCAAATAT+AGG | - | chr1.1:19866818-19866837 | MS.gene026339:CDS | 20.0% |
| !! | AGAAAAACAATTTCTTCATT+AGG | + | chr1.1:19866726-19866745 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | + | chr1.1:19868179-19868198 | None:intergenic | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | + | chr1.1:19868260-19868279 | None:intergenic | 20.0% |
| !! | CAAATATGCATTACAAAATT+TGG | - | chr1.1:19866622-19866641 | MS.gene026339:intron | 20.0% |
| !! | CAATATAATAATTCATGTGT+TGG | - | chr1.1:19868493-19868512 | MS.gene026339:CDS | 20.0% |
| !! | CGGAAATTCATTTAATATAA+TGG | - | chr1.1:19868411-19868430 | MS.gene026339:intron | 20.0% |
| !! | GAAAAACAATTTCTTCATTA+GGG | + | chr1.1:19866725-19866744 | None:intergenic | 20.0% |
| !! | TATATTAAATGAATTTCCGA+TGG | + | chr1.1:19868410-19868429 | None:intergenic | 20.0% |
| !! | TTCAAGATAAAGTAGTTAAA+TGG | + | chr1.1:19868076-19868095 | None:intergenic | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | + | chr1.1:19868178-19868197 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | - | chr1.1:19868261-19868280 | MS.gene026339:intron | 20.0% |
| !!! | TAAAATGTATGTGTATTGAT+AGG | - | chr1.1:19868038-19868057 | MS.gene026339:intron | 20.0% |
| !!! | TGATCACTTTTATTTTTGAA+AGG | - | chr1.1:19867707-19867726 | MS.gene026339:CDS | 20.0% |
| !!! | TGTTGCTACTAATTTTTTTT+TGG | - | chr1.1:19867515-19867534 | MS.gene026339:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | - | chr1.1:19867144-19867163 | MS.gene026339:intron | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | - | chr1.1:19868178-19868197 | MS.gene026339:intron | 20.0% |
| ! | AAGTAGCTGTAATGATATTA+AGG | - | chr1.1:19867562-19867581 | MS.gene026339:intron | 25.0% |
| ! | AGTCTCATTATGGTATAATT+TGG | + | chr1.1:19867871-19867890 | None:intergenic | 25.0% |
| ! | CAAAAAATTTCTTCACTTTC+TGG | + | chr1.1:19867607-19867626 | None:intergenic | 25.0% |
| ! | CTATTCTTTGATGAGATTAA+TGG | - | chr1.1:19867813-19867832 | MS.gene026339:CDS | 25.0% |
| ! | CTCTTTAATGTGATTGTATT+CGG | - | chr1.1:19867190-19867209 | MS.gene026339:intron | 25.0% |
| ! | GAAGAATAACCTTAAAAAAG+TGG | + | chr1.1:19866533-19866552 | None:intergenic | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | + | chr1.1:19868330-19868349 | None:intergenic | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | - | chr1.1:19868391-19868410 | MS.gene026339:intron | 25.0% |
| ! | TGAATTTGTCAAGAAACATA+TGG | - | chr1.1:19868125-19868144 | MS.gene026339:intron | 25.0% |
| ! | TGCATATTGTGAAAAATCAA+GGG | + | chr1.1:19866604-19866623 | None:intergenic | 25.0% |
| ! | TGTTTCTTGACAAATTCATT+TGG | + | chr1.1:19868123-19868142 | None:intergenic | 25.0% |
| ! | TTGCATATTGTGAAAAATCA+AGG | + | chr1.1:19866605-19866624 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | + | chr1.1:19866993-19867012 | None:intergenic | 25.0% |
| !! | TACCAATTTTTCTTCTTGAA+GGG | + | chr1.1:19866562-19866581 | None:intergenic | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | + | chr1.1:19866992-19867011 | None:intergenic | 25.0% |
| !! | TATGATGTTACATTTTGCAA+TGG | - | chr1.1:19867094-19867113 | MS.gene026339:intron | 25.0% |
| !! | TTACCAATTTTTCTTCTTGA+AGG | + | chr1.1:19866563-19866582 | None:intergenic | 25.0% |
| !!! | GAATTCTCAATTTTTTTAGC+AGG | - | chr1.1:19867539-19867558 | MS.gene026339:intron | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | - | chr1.1:19866993-19867012 | MS.gene026339:intron | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | - | chr1.1:19868332-19868351 | MS.gene026339:intron | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | - | chr1.1:19868338-19868357 | MS.gene026339:intron | 25.0% |
| !!! | TTGAAAACTCCTTATTTTGA+AGG | - | chr1.1:19868363-19868382 | MS.gene026339:intron | 25.0% |
| AGTGATTGTTCAAATATAGG+TGG | - | chr1.1:19866821-19866840 | MS.gene026339:CDS | 30.0% | |
| ATACATTGATAGAGATCTCT+TGG | - | chr1.1:19867667-19867686 | MS.gene026339:CDS | 30.0% | |
| ATCAACTCGAATGAACAAAA+AGG | - | chr1.1:19867370-19867389 | MS.gene026339:CDS | 30.0% | |
| CCAATCACAATCTATTATGT+AGG | + | chr1.1:19867928-19867947 | None:intergenic | 30.0% | |
| CCTACATAATAGATTGTGAT+TGG | - | chr1.1:19867925-19867944 | MS.gene026339:CDS | 30.0% | |
| TACCCTTCAAGAAGAAAAAT+TGG | - | chr1.1:19866557-19866576 | MS.gene026339:intron | 30.0% | |
| TTAGCATCATACATGCAAAA+AGG | + | chr1.1:19867643-19867662 | None:intergenic | 30.0% | |
| TTCTTACACACTTTCATAGA+CGG | + | chr1.1:19867343-19867362 | None:intergenic | 30.0% | |
| ! | ATGTTACATTTTGCAATGGT+TGG | - | chr1.1:19867098-19867117 | MS.gene026339:intron | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | - | chr1.1:19868291-19868310 | MS.gene026339:intron | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | - | chr1.1:19866998-19867017 | MS.gene026339:intron | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | - | chr1.1:19867057-19867076 | MS.gene026339:intron | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | - | chr1.1:19866521-19866540 | MS.gene026339:intron | 30.0% |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | - | chr1.1:19867056-19867075 | MS.gene026339:intron | 30.0% |
| AAACAATCTGCTCTAACTTG+TGG | - | chr1.1:19868222-19868241 | MS.gene026339:intron | 35.0% | |
| CAAGAAACATATGGACATGA+TGG | - | chr1.1:19868134-19868153 | MS.gene026339:intron | 35.0% | |
| GAACATGATCATCAGAGTAA+TGG | - | chr1.1:19866504-19866523 | MS.gene026339:intron | 35.0% | |
| GTGATTGTATTCGGTAAATG+CGG | - | chr1.1:19867199-19867218 | MS.gene026339:intron | 35.0% | |
| TAACAAACCCAGTTACTCTA+AGG | - | chr1.1:19867023-19867042 | MS.gene026339:intron | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | + | chr1.1:19867033-19867052 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | + | chr1.1:19867034-19867053 | None:intergenic | 35.0% | |
| ! | AAACATATGGACATGATGGA+AGG | - | chr1.1:19868138-19868157 | MS.gene026339:intron | 35.0% |
| ! | ACTTTCTTTTCCACCAAGTT+TGG | + | chr1.1:19867052-19867071 | None:intergenic | 35.0% |
| ! | CTTCACTAGTTTCTCTTGAA+GGG | + | chr1.1:19867240-19867259 | None:intergenic | 35.0% |
| ! | TCTTCACTAGTTTCTCTTGA+AGG | + | chr1.1:19867241-19867260 | None:intergenic | 35.0% |
| !! | GTTTTTGAGCATGTGAACAA+TGG | - | chr1.1:19867430-19867449 | MS.gene026339:CDS | 35.0% |
| !! | TACTCTAAGGTTTCCAAACT+TGG | - | chr1.1:19867036-19867055 | MS.gene026339:intron | 35.0% |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | - | chr1.1:19866987-19867006 | MS.gene026339:intron | 35.0% |
| AAGGATCTAAGCATGAGAAG+AGG | - | chr1.1:19867389-19867408 | MS.gene026339:CDS | 40.0% | |
| TTGAGCATGTGAACAATGGT+TGG | - | chr1.1:19867434-19867453 | MS.gene026339:CDS | 40.0% | |
| ! | AATCTGCTCTAACTTGTGGT+TGG | - | chr1.1:19868226-19868245 | MS.gene026339:intron | 40.0% |
| ! | TCATGTGTTGGTCTATTGCA+GGG | - | chr1.1:19868505-19868524 | MS.gene026339:CDS | 40.0% |
| ! | TCTAAGGTTTCCAAACTTGG+TGG | - | chr1.1:19867039-19867058 | MS.gene026339:intron | 40.0% |
| ! | TTCATGTGTTGGTCTATTGC+AGG | - | chr1.1:19868504-19868523 | MS.gene026339:CDS | 40.0% |
| ATTAGGGCTGCATCCAACAA+AGG | + | chr1.1:19866709-19866728 | None:intergenic | 45.0% | |
| CTTCATCATCACGCGGTAAA+AGG | - | chr1.1:19867302-19867321 | MS.gene026339:intron | 45.0% | |
| GAGAATCCTTCATCATCACG+CGG | - | chr1.1:19867295-19867314 | MS.gene026339:intron | 45.0% | |
| ! | CATCCAACAAAGGCTAGCTA+GGG | + | chr1.1:19866699-19866718 | None:intergenic | 45.0% |
| !! | CTTTTACCGCGTGATGATGA+AGG | + | chr1.1:19867304-19867323 | None:intergenic | 45.0% |
| CACACTTTCATAGACGGTGC+TGG | + | chr1.1:19867337-19867356 | None:intergenic | 50.0% | |
| ! | GCATCCAACAAAGGCTAGCT+AGG | + | chr1.1:19866700-19866719 | None:intergenic | 50.0% |
| ! | GTGTTGGTCTATTGCAGGGT+TGG | - | chr1.1:19868509-19868528 | MS.gene026339:CDS | 50.0% |
| !! | CATCCCTAGCTAGCCTTTGT+TGG | - | chr1.1:19866693-19866712 | MS.gene026339:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 19866492 | 19868536 | 19866492 | ID=MS.gene026339 |
| chr1.1 | mRNA | 19866492 | 19868536 | 19866492 | ID=MS.gene026339.t1;Parent=MS.gene026339 |
| chr1.1 | exon | 19868450 | 19868536 | 19868450 | ID=MS.gene026339.t1.exon1;Parent=MS.gene026339.t1 |
| chr1.1 | CDS | 19868450 | 19868536 | 19868450 | ID=cds.MS.gene026339.t1;Parent=MS.gene026339.t1 |
| chr1.1 | exon | 19867577 | 19868045 | 19867577 | ID=MS.gene026339.t1.exon2;Parent=MS.gene026339.t1 |
| chr1.1 | CDS | 19867577 | 19868045 | 19867577 | ID=cds.MS.gene026339.t1;Parent=MS.gene026339.t1 |
| chr1.1 | exon | 19867340 | 19867470 | 19867340 | ID=MS.gene026339.t1.exon3;Parent=MS.gene026339.t1 |
| chr1.1 | CDS | 19867340 | 19867470 | 19867340 | ID=cds.MS.gene026339.t1;Parent=MS.gene026339.t1 |
| chr1.1 | exon | 19866644 | 19866914 | 19866644 | ID=MS.gene026339.t1.exon4;Parent=MS.gene026339.t1 |
| chr1.1 | CDS | 19866644 | 19866914 | 19866644 | ID=cds.MS.gene026339.t1;Parent=MS.gene026339.t1 |
| chr1.1 | exon | 19866492 | 19866502 | 19866492 | ID=MS.gene026339.t1.exon5;Parent=MS.gene026339.t1 |
| chr1.1 | CDS | 19866492 | 19866502 | 19866492 | ID=cds.MS.gene026339.t1;Parent=MS.gene026339.t1 |
| Gene Sequence |
| Protein sequence |
