AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026347

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026347.t1 MTR_1g035460 92.732 399 23 2 33 429 1 395 0.0 736
MS.gene026347.t1 MTR_1g108780 47.939 461 214 10 34 482 13 459 4.13e-137 403
MS.gene026347.t1 MTR_8g103940 44.219 493 242 13 1 482 26 496 3.05e-130 387
MS.gene026347.t1 MTR_7g050560 36.571 350 169 11 10 348 5 312 6.12e-57 191
MS.gene026347.t1 MTR_3g098790 37.195 328 153 9 13 323 8 299 2.71e-56 190
MS.gene026347.t1 MTR_7g050590 35.161 310 166 7 33 330 1 287 1.71e-51 177
MS.gene026347.t1 MTR_7g050720 35.714 322 175 10 18 323 10 315 7.36e-51 176
MS.gene026347.t1 MTR_7g050710 32.827 329 168 6 16 323 11 307 1.47e-50 175
MS.gene026347.t1 MTR_7g050580 32.456 342 178 7 18 348 13 312 4.24e-50 174
MS.gene026347.t1 MTR_7g050580 25.177 282 171 9 235 481 14 290 4.16e-11 64.3
MS.gene026347.t1 MTR_3g061320 32.390 318 164 8 12 322 6 279 2.49e-45 160
MS.gene026347.t1 MTR_3g061320 27.899 276 160 8 235 480 13 279 5.54e-22 95.9
MS.gene026347.t1 MTR_3g061340 35.048 311 144 13 17 319 11 271 1.14e-44 158
MS.gene026347.t1 MTR_3g061340 29.197 274 154 10 235 480 13 274 4.52e-21 93.2
MS.gene026347.t1 MTR_3g061370 32.492 317 168 9 13 322 4 281 1.19e-44 158
MS.gene026347.t1 MTR_3g061370 27.338 278 164 10 235 480 10 281 2.34e-17 82.8
MS.gene026347.t1 MTR_3g061350 30.892 314 171 8 16 322 10 284 2.21e-44 157
MS.gene026347.t1 MTR_3g061350 28.674 279 159 9 235 480 13 284 1.07e-21 95.5
MS.gene026347.t1 MTR_4g068320 29.000 400 201 12 18 336 6 403 4.60e-42 155
MS.gene026347.t1 MTR_3g061330 35.688 269 134 9 12 280 6 235 2.68e-41 148
MS.gene026347.t1 MTR_3g061310 29.524 315 175 8 16 322 10 285 1.19e-39 145
MS.gene026347.t1 MTR_3g061310 25.899 278 169 7 235 480 13 285 7.22e-19 87.0
MS.gene026347.t1 MTR_4g119990 31.118 331 196 11 13 331 10 320 3.68e-38 143
MS.gene026347.t1 MTR_3g061290 41.558 154 86 3 16 169 10 159 7.93e-33 124
MS.gene026347.t1 MTR_6g043890 29.870 308 181 9 16 313 13 295 1.40e-32 127
MS.gene026347.t1 MTR_5g044670 27.778 324 186 10 18 326 16 306 3.05e-32 126
MS.gene026347.t1 MTR_5g044670 26.335 281 156 11 249 483 30 305 3.80e-15 77.0
MS.gene026347.t1 MTR_1g034210 26.087 368 217 12 18 334 7 370 8.10e-32 125
MS.gene026347.t1 MTR_6g061070 24.949 493 310 12 13 480 13 470 8.49e-30 122
MS.gene026347.t1 MTR_7g050640 47.525 101 53 0 18 118 13 113 4.35e-28 108
MS.gene026347.t1 MTR_1g035620 22.917 480 276 16 18 481 9 410 7.37e-26 109
MS.gene026347.t1 MTR_1g035640 26.730 318 187 9 26 336 13 291 1.09e-25 109
MS.gene026347.t1 MTR_1g021270 25.705 319 206 6 32 319 29 347 2.22e-25 109
MS.gene026347.t1 MTR_3g005460 21.632 527 314 12 18 480 25 516 8.76e-25 107
MS.gene026347.t1 MTR_3g005460 25.697 323 160 8 15 322 259 516 2.95e-22 100
MS.gene026347.t1 MTR_1g035570 27.302 315 182 8 26 328 13 292 2.86e-24 105
MS.gene026347.t1 MTR_5g070440 26.266 316 155 9 18 323 21 268 2.44e-23 99.8
MS.gene026347.t1 MTR_3g005490 27.184 309 158 7 18 326 21 262 1.90e-22 97.1
MS.gene026347.t1 MTR_3g005420 26.282 312 153 10 21 323 293 536 3.11e-21 97.1
MS.gene026347.t1 MTR_3g005420 29.752 121 81 2 18 137 40 157 6.56e-11 65.1
MS.gene026347.t1 MTR_3g061300 39.370 127 72 3 360 483 2 126 7.00e-20 85.9
MS.gene026347.t1 MTR_1g034240 34.532 139 78 2 18 146 7 142 1.19e-19 91.7
MS.gene026347.t1 MTR_1g034240 27.660 188 118 5 165 334 222 409 3.37e-17 84.0
MS.gene026347.t1 MTR_3g005480 32.000 150 93 3 18 159 21 169 4.26e-19 87.4
MS.gene026347.t1 MTR_3g061220 37.600 125 61 3 16 140 10 117 6.57e-19 82.8
MS.gene026347.t1 MTR_1g035490 27.519 258 150 9 232 480 99 328 1.35e-18 87.0
MS.gene026347.t1 MTR_3g005495 26.599 297 131 9 21 311 247 462 1.56e-18 88.6
MS.gene026347.t1 MTR_3g005495 22.594 478 296 17 34 475 29 468 1.50e-15 79.3
MS.gene026347.t1 MTR_1g035650 40.000 100 58 1 17 116 8 105 2.64e-18 83.6
MS.gene026347.t1 MTR_1g034210 23.585 318 191 10 18 287 7 320 6.18e-18 85.1
MS.gene026347.t1 MTR_1g021400 24.398 332 216 13 16 322 28 349 2.81e-17 83.6
MS.gene026347.t1 MTR_1g035480 33.333 144 88 4 13 151 12 152 3.54e-15 73.9
MS.gene026347.t1 MTR_1g098450 24.260 338 209 13 11 341 5 302 4.16e-15 76.6
MS.gene026347.t1 MTR_1g035440 36.449 107 61 2 16 118 13 116 4.73e-15 75.1
MS.gene026347.t1 MTR_1g033740 35.606 132 78 4 13 140 17 145 7.26e-15 73.6
MS.gene026347.t1 MTR_3g005440 22.164 379 260 10 32 388 34 399 9.19e-15 76.6
MS.gene026347.t1 MTR_1g035520 25.595 336 202 13 12 321 69 382 1.57e-14 75.5
MS.gene026347.t1 MTR_1g035510 36.283 113 66 3 33 142 1 110 4.77e-14 71.6
MS.gene026347.t1 MTR_1g021410 20.635 315 216 6 31 319 35 341 6.25e-14 73.6
MS.gene026347.t1 MTR_1g050845 34.343 99 63 1 18 116 9 105 1.50e-13 73.6
MS.gene026347.t1 MTR_1g021380 22.727 308 208 9 31 321 34 328 4.19e-13 70.9
MS.gene026347.t1 MTR_1g035500 31.852 135 84 3 13 142 20 151 1.75e-12 66.2
MS.gene026347.t1 MTR_1g035470 36.283 113 65 4 33 141 1 110 1.41e-11 62.8
MS.gene026347.t1 MTR_3g005420 29.752 121 81 2 18 137 21 138 6.13e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026347.t1 AT3G18990 27.429 350 197 10 18 326 6 339 1.09e-35 135
MS.gene026347.t1 AT3G18990 36.607 112 66 3 374 483 230 338 2.11e-14 74.7
MS.gene026347.t1 AT3G18990 27.011 348 201 9 18 326 6 339 5.04e-35 134
MS.gene026347.t1 AT3G18990 36.607 112 66 3 374 483 230 338 3.11e-14 74.7
MS.gene026347.t1 AT4G01580 33.571 140 84 2 17 154 29 161 4.35e-18 82.8
MS.gene026347.t1 AT3G18960 36.275 102 65 0 17 118 29 130 8.91e-18 82.0
MS.gene026347.t1 AT3G18960 36.275 102 65 0 17 118 29 130 1.30e-17 82.0
MS.gene026347.t1 AT1G49480 36.607 112 66 3 374 483 115 223 2.18e-15 75.9
MS.gene026347.t1 AT1G49480 30.405 148 95 5 186 326 78 224 5.59e-15 74.7
MS.gene026347.t1 AT1G49480 36.607 112 66 3 374 483 115 223 2.18e-15 75.9
MS.gene026347.t1 AT1G49480 30.405 148 95 5 186 326 78 224 5.59e-15 74.7
MS.gene026347.t1 AT1G49480 36.607 112 66 3 374 483 115 223 2.18e-15 75.9
MS.gene026347.t1 AT1G49480 30.405 148 95 5 186 326 78 224 5.59e-15 74.7
MS.gene026347.t1 AT4G33280 24.839 310 204 10 31 330 36 326 3.67e-15 77.0
MS.gene026347.t1 AT1G49475 33.333 135 79 4 17 142 33 165 7.21e-15 73.6
MS.gene026347.t1 AT3G18960 40.000 85 51 0 34 118 9 93 1.15e-14 72.4

Find 85 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGAGGTTGGAAGCTATTT+TGG 0.155141 1.4:+19971166 MS.gene026347:CDS
TGAGGACTCCATTGAAATTT+TGG 0.168496 1.4:+19969659 MS.gene026347:CDS
AATCAAATAATCCTTCTTTC+AGG 0.198997 1.4:+19970042 MS.gene026347:CDS
GGACACATAATTGGTGATTT+TGG 0.244060 1.4:-19969714 None:intergenic
TAATTTGTAATGAAGGAATT+TGG 0.257343 1.4:-19971045 None:intergenic
CATGATGCTTAGGCAAGTTT+TGG 0.267797 1.4:-19969797 None:intergenic
CAAAGTAAGGTATTGGCTTT+TGG 0.269874 1.4:-19970386 None:intergenic
GTACACAACAAGTTGAAAAT+TGG 0.270510 1.4:+19970340 MS.gene026347:CDS
GAATAACAATGCAACTTTAC+AGG 0.277076 1.4:-19971120 None:intergenic
AACTCTTGGATGGAAGAGTT+TGG 0.284086 1.4:+19970266 MS.gene026347:CDS
CAGATGGTGATGTTAAAGTT+TGG 0.294860 1.4:+19971084 MS.gene026347:CDS
CTAGAATGCCCTCGTTGATT+TGG 0.297882 1.4:-19970891 None:intergenic
AGCTTTCCATCTTGAAGAAT+TGG 0.312657 1.4:-19968781 None:intergenic
AACAACAATGACTAGCAATA+AGG 0.315318 1.4:+19968702 None:intergenic
ATAAATATGTGAAGACTTCA+TGG 0.326594 1.4:-19970069 None:intergenic
TGGGATGCTAAATATTGTTC+TGG 0.351348 1.4:+19970286 MS.gene026347:CDS
TGTGGTTGAGGACACATAAT+TGG 0.354680 1.4:-19969723 None:intergenic
TGACATTCTTCTTCAACTCT+TGG 0.360124 1.4:+19970252 MS.gene026347:CDS
TTACTTTCAAAGTAAGGTAT+TGG 0.362100 1.4:-19970393 None:intergenic
AGATGGTGATGTTAAAGTTT+GGG 0.372056 1.4:+19971085 MS.gene026347:CDS
TACACAACAAGTTGAAAATT+GGG 0.372067 1.4:+19970341 MS.gene026347:CDS
GAAACTATTATAACAAATAA+AGG 0.373977 1.4:+19970590 MS.gene026347:CDS
TGGTCCTTAGTGAAACCTTT+TGG 0.375145 1.4:-19969360 None:intergenic
CTCAATTTCTTATGTGGTTG+AGG 0.376046 1.4:-19969735 None:intergenic
ACTCTTGGATGGAAGAGTTT+GGG 0.379451 1.4:+19970267 MS.gene026347:CDS
TGTTATTCCAACATGAAATC+AGG 0.384360 1.4:+19971135 MS.gene026347:CDS
TTCCTTCATTACAAATTACT+TGG 0.385639 1.4:+19971050 MS.gene026347:CDS
ATCCAAGTAATTTGTAATGA+AGG 0.391002 1.4:-19971052 None:intergenic
GATTTGACATGTCATTCATA+TGG 0.392626 1.4:-19969380 None:intergenic
ATATTATTACTTTCAAAGTA+AGG 0.401134 1.4:-19970399 None:intergenic
TTCAATCTCAAGGGTACTCT+TGG 0.401861 1.4:-19969580 None:intergenic
TATTTAACTGCTCCTGCTCT+TGG 0.409863 1.4:-19970004 None:intergenic
GCTTCCAACCTCTACAAAAC+TGG 0.416735 1.4:-19971158 None:intergenic
TCACTTCTCAATTTCTTATG+TGG 0.420211 1.4:-19969741 None:intergenic
TGACTTGTCCAAAATTTCAA+TGG 0.423265 1.4:-19969667 None:intergenic
TCAAAGAGACAAAGACTTCT+CGG 0.423887 1.4:+19970556 MS.gene026347:CDS
ACAACAATGACTAGCAATAA+GGG 0.438593 1.4:+19968703 None:intergenic
TGAGTACGACTAAAATCAAT+GGG 0.448181 1.4:+19969442 MS.gene026347:CDS
ACATATTTATAGTCATTCCT+TGG 0.460818 1.4:+19970082 MS.gene026347:CDS
CAAGAATTATACCACTAGAT+TGG 0.461063 1.4:-19969821 None:intergenic
ACACATTATTCACTAGATCA+TGG 0.461106 1.4:+19969501 MS.gene026347:CDS
TGGAGTTGAATTTATCAGCT+TGG 0.461811 1.4:-19970839 None:intergenic
TCAACGAGGGCATTCTAGAT+TGG 0.465952 1.4:+19970896 MS.gene026347:CDS
ATGAGTACGACTAAAATCAA+TGG 0.474758 1.4:+19969441 MS.gene026347:CDS
CCTTGAGGTGGAGGGGTGTG+TGG 0.491665 1.4:-19970439 None:intergenic
TGGGAAGAAAATAAATTGAA+AGG 0.492702 1.4:+19971186 MS.gene026347:CDS
ACCACACCAATTCTTCAAGA+TGG 0.495178 1.4:+19968775 MS.gene026347:CDS
AGTAATAATATTTAGACTTG+AGG 0.498996 1.4:+19970411 MS.gene026347:CDS
TAAAGTTTGGGAAGAAATTG+TGG 0.501503 1.4:+19971097 MS.gene026347:CDS
ATTCTTCTTCAACTCTTGGA+TGG 0.502926 1.4:+19970256 MS.gene026347:CDS
GGAAAGGATATTCAATCTCA+AGG 0.515164 1.4:-19969590 None:intergenic
CTAGATTGGACATGATGCTT+AGG 0.523842 1.4:-19969807 None:intergenic
TCTGGAGTCTTGAGAAACAT+TGG 0.528591 1.4:-19969402 None:intergenic
GTTGGATTACCTTGAGGTGG+AGG 0.530634 1.4:-19970448 None:intergenic
CACATTATTCACTAGATCAT+GGG 0.539236 1.4:+19969502 MS.gene026347:CDS
TTGGATTACCTTGAGGTGGA+GGG 0.543725 1.4:-19970447 None:intergenic
TTCATGGTAATCCTGAAAGA+AGG 0.545664 1.4:-19970053 None:intergenic
TCGCGTTATGACAGGAGAGA+AGG 0.560064 1.4:+19970758 MS.gene026347:intron
GCGTTGTAGATGATACCAAA+AGG 0.565115 1.4:+19969345 MS.gene026347:intron
CTTGGATAACAAGGAACAGA+TGG 0.569177 1.4:+19971068 MS.gene026347:CDS
ACGAATAGTAGAAGCAGAGA+GGG 0.570331 1.4:-19968737 None:intergenic
AAACTGGCCTGATTTCATGT+TGG 0.576131 1.4:-19971142 None:intergenic
TACAAATTACTTGGATAACA+AGG 0.576875 1.4:+19971059 MS.gene026347:CDS
TGATTGTTAGCAAATTGTGA+TGG 0.578116 1.4:-19970211 None:intergenic
CAAGTTGGATTACCTTGAGG+TGG 0.583413 1.4:-19970451 None:intergenic
GAAGAAAATAAATTGAAAGG+TGG 0.594266 1.4:+19971189 MS.gene026347:CDS
GATTGTTAGCAAATTGTGAT+GGG 0.597689 1.4:-19970210 None:intergenic
GAAAGGATATTCAATCTCAA+GGG 0.599161 1.4:-19969589 None:intergenic
GATACCAAAAGGTTTCACTA+AGG 0.601016 1.4:+19969356 MS.gene026347:CDS
ATGTTTCTCAAGACTCCAGA+TGG 0.601949 1.4:+19969405 MS.gene026347:CDS
AGTGACTCAAGTGAAGGTGT+TGG 0.603054 1.4:+19969759 MS.gene026347:CDS
TCCATCTTGAAGAATTGGTG+TGG 0.604101 1.4:-19968776 None:intergenic
CCACACACCCCTCCACCTCA+AGG 0.604249 1.4:+19970439 MS.gene026347:CDS
TTGAGAAGTGACTCAAGTGA+AGG 0.604348 1.4:+19969753 MS.gene026347:CDS
TGTCTTTGAGCTTATCAAGA+GGG 0.608394 1.4:+19971221 MS.gene026347:CDS
TTCACTAGATCATGGGCACA+TGG 0.616979 1.4:+19969509 MS.gene026347:CDS
TGGATTACCTTGAGGTGGAG+GGG 0.627349 1.4:-19970446 None:intergenic
ACACAACAAGTTGAAAATTG+GGG 0.637450 1.4:+19970342 MS.gene026347:CDS
AAGCATCATGTCCAATCTAG+TGG 0.644078 1.4:+19969810 MS.gene026347:CDS
AACGAATAGTAGAAGCAGAG+AGG 0.651419 1.4:-19968738 None:intergenic
TGATCAACAAAGTAGTGATG+AGG 0.654895 1.4:+19969641 MS.gene026347:CDS
GTGTCTTTGAGCTTATCAAG+AGG 0.662665 1.4:+19971220 MS.gene026347:CDS
AATATTATGCCAAATCAACG+AGG 0.719522 1.4:+19970882 MS.gene026347:CDS
ATATTATGCCAAATCAACGA+GGG 0.724045 1.4:+19970883 MS.gene026347:CDS
GAGTACGACTAAAATCAATG+GGG 0.780347 1.4:+19969443 MS.gene026347:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAAACATAATATGA+AGG - chr1.4:19968829-19968848 None:intergenic 10.0%
!! ATATTATTACTTTCAAAGTA+AGG - chr1.4:19970402-19970421 None:intergenic 15.0%
!! GAAACTATTATAACAAATAA+AGG + chr1.4:19970590-19970609 MS.gene026347:CDS 15.0%
!!! ATTATTTTGAAGATAAAACA+AGG - chr1.4:19970507-19970526 None:intergenic 15.0%
!!! TTATCTTTTAATTTATCCAA+TGG + chr1.4:19969858-19969877 MS.gene026347:intron 15.0%
!!! TTGTTTTATCTTCAAAATAA+TGG + chr1.4:19970506-19970525 MS.gene026347:intron 15.0%
!! AAGATAAAACAAGGTAATAA+AGG - chr1.4:19970498-19970517 None:intergenic 20.0%
!! AGTAATAATATTTAGACTTG+AGG + chr1.4:19970411-19970430 MS.gene026347:CDS 20.0%
!! ATAATATTGACCTTGAAAAA+TGG - chr1.4:19970870-19970889 None:intergenic 20.0%
!! TTTATATGTATGCTAACATA+AGG + chr1.4:19969314-19969333 MS.gene026347:intron 20.0%
!!! TAATTTGTAATGAAGGAATT+TGG - chr1.4:19971048-19971067 None:intergenic 20.0%
!!! TATTGTTCTGGAAAAATTAA+AGG + chr1.4:19970298-19970317 MS.gene026347:CDS 20.0%
! AAAGTTCAATGCATATACTT+TGG - chr1.4:19970156-19970175 None:intergenic 25.0%
! AATCAAATAATCCTTCTTTC+AGG + chr1.4:19970042-19970061 MS.gene026347:CDS 25.0%
! ACATATTTATAGTCATTCCT+TGG + chr1.4:19970082-19970101 MS.gene026347:CDS 25.0%
! ATAAATATGTGAAGACTTCA+TGG - chr1.4:19970072-19970091 None:intergenic 25.0%
! ATAGACAAAAATTAACCCTT+CGG + chr1.4:19968987-19969006 MS.gene026347:intron 25.0%
! CATTTGAACAATTTCTCTTA+TGG + chr1.4:19969084-19969103 MS.gene026347:intron 25.0%
! GAAGAAAATAAATTGAAAGG+TGG + chr1.4:19971189-19971208 MS.gene026347:CDS 25.0%
! TACAAATTACTTGGATAACA+AGG + chr1.4:19971059-19971078 MS.gene026347:CDS 25.0%
! TGGGAAGAAAATAAATTGAA+AGG + chr1.4:19971186-19971205 MS.gene026347:CDS 25.0%
! TTACTTTCAAAGTAAGGTAT+TGG - chr1.4:19970396-19970415 None:intergenic 25.0%
! TTCCTTCATTACAAATTACT+TGG + chr1.4:19971050-19971069 MS.gene026347:CDS 25.0%
! TTTATTTGTAGATGACGAAA+CGG - chr1.4:19969060-19969079 None:intergenic 25.0%
!! ATATTTTCAACCCTAAAGAT+GGG + chr1.4:19969025-19969044 MS.gene026347:intron 25.0%
!! ATCCAAGTAATTTGTAATGA+AGG - chr1.4:19971055-19971074 None:intergenic 25.0%
!! CTTAATGTTCATATTTTCAG+AGG + chr1.4:19971255-19971274 MS.gene026347:CDS 25.0%
!! TACACAACAAGTTGAAAATT+GGG + chr1.4:19970341-19970360 MS.gene026347:CDS 25.0%
!! TATATTTTCAACCCTAAAGA+TGG + chr1.4:19969024-19969043 MS.gene026347:intron 25.0%
!! TCAGTCAAGTAACATTTTAA+CGG - chr1.4:19971014-19971033 None:intergenic 25.0%
!! TTTGAATTTTCACTTCATGA+TGG + chr1.4:19968873-19968892 MS.gene026347:intron 25.0%
!!! AATCCAACTTGTTTTTTCTT+TGG + chr1.4:19970463-19970482 MS.gene026347:intron 25.0%
!!! CTCTCTAAAAGTTTTAACTT+GGG + chr1.4:19968953-19968972 MS.gene026347:intron 25.0%
!!! TCTCTAAAAGTTTTAACTTG+GGG + chr1.4:19968954-19968973 MS.gene026347:intron 25.0%
!!! TCTCTCTAAAAGTTTTAACT+TGG + chr1.4:19968952-19968971 MS.gene026347:intron 25.0%
!!! TTTAATTTGTTCTGCACATT+TGG + chr1.4:19968842-19968861 MS.gene026347:intron 25.0%
!!! TTTGTTCATGTTGATTTTCA+TGG - chr1.4:19969614-19969633 None:intergenic 25.0%
AAAAATTAACCCTTCGGAAA+TGG + chr1.4:19968993-19969012 MS.gene026347:intron 30.0%
AAAATTAACCCTTCGGAAAT+GGG + chr1.4:19968994-19969013 MS.gene026347:intron 30.0%
AATATTATGCCAAATCAACG+AGG + chr1.4:19970882-19970901 MS.gene026347:CDS 30.0%
AATTAATCAAAGACTCACCA+AGG - chr1.4:19970102-19970121 None:intergenic 30.0%
ACACATTATTCACTAGATCA+TGG + chr1.4:19969501-19969520 MS.gene026347:CDS 30.0%
ATATTATGCCAAATCAACGA+GGG + chr1.4:19970883-19970902 MS.gene026347:CDS 30.0%
ATGAGTACGACTAAAATCAA+TGG + chr1.4:19969441-19969460 MS.gene026347:CDS 30.0%
ATGTTAACAAATGTTCTTGG+AGG + chr1.4:19969109-19969128 MS.gene026347:intron 30.0%
CAAGAATTATACCACTAGAT+TGG - chr1.4:19969824-19969843 None:intergenic 30.0%
CACATTATTCACTAGATCAT+GGG + chr1.4:19969502-19969521 MS.gene026347:CDS 30.0%
CTTCCAAAGAAAAAACAAGT+TGG - chr1.4:19970469-19970488 None:intergenic 30.0%
GAAAGGATATTCAATCTCAA+GGG - chr1.4:19969592-19969611 None:intergenic 30.0%
GAATAACAATGCAACTTTAC+AGG - chr1.4:19971123-19971142 None:intergenic 30.0%
GACCTTGAAAAATGGATATT+TGG - chr1.4:19970862-19970881 None:intergenic 30.0%
GATTGTTAGCAAATTGTGAT+GGG - chr1.4:19970213-19970232 None:intergenic 30.0%
GATTTGACATGTCATTCATA+TGG - chr1.4:19969383-19969402 None:intergenic 30.0%
GTCATGTTAACAAATGTTCT+TGG + chr1.4:19969106-19969125 MS.gene026347:intron 30.0%
TAAAGTTTGGGAAGAAATTG+TGG + chr1.4:19971097-19971116 MS.gene026347:CDS 30.0%
TCACTTCTCAATTTCTTATG+TGG - chr1.4:19969744-19969763 None:intergenic 30.0%
TGAGTACGACTAAAATCAAT+GGG + chr1.4:19969442-19969461 MS.gene026347:CDS 30.0%
TGATTGTTAGCAAATTGTGA+TGG - chr1.4:19970214-19970233 None:intergenic 30.0%
TGTTATTCCAACATGAAATC+AGG + chr1.4:19971135-19971154 MS.gene026347:CDS 30.0%
TTATTTGTAGATGACGAAAC+GGG - chr1.4:19969059-19969078 None:intergenic 30.0%
! ACACAACAAGTTGAAAATTG+GGG + chr1.4:19970342-19970361 MS.gene026347:CDS 30.0%
! AGATGGTGATGTTAAAGTTT+GGG + chr1.4:19971085-19971104 MS.gene026347:CDS 30.0%
! ATTCCTCAAAATTTGTTTGC+GGG - chr1.4:19970712-19970731 None:intergenic 30.0%
! CTAAAATCAATGGGGATTTT+TGG + chr1.4:19969451-19969470 MS.gene026347:CDS 30.0%
! CTCTTTGAACTGATTCTAAA+GGG - chr1.4:19970544-19970563 None:intergenic 30.0%
! GATTCCTCAAAATTTGTTTG+CGG - chr1.4:19970713-19970732 None:intergenic 30.0%
! GTACACAACAAGTTGAAAAT+TGG + chr1.4:19970340-19970359 MS.gene026347:CDS 30.0%
! TATGTTGTTCATTTTCCTAG+AGG + chr1.4:19969911-19969930 MS.gene026347:intron 30.0%
! TCTCTTTGAACTGATTCTAA+AGG - chr1.4:19970545-19970564 None:intergenic 30.0%
! TGAAGAAAACTCTCATTTTG+TGG + chr1.4:19969545-19969564 MS.gene026347:CDS 30.0%
! TGACTTGTCCAAAATTTCAA+TGG - chr1.4:19969670-19969689 None:intergenic 30.0%
!! CTCCAAATATCCATTTTTCA+AGG + chr1.4:19970857-19970876 MS.gene026347:CDS 30.0%
!! GAAAGTATAACAGCACTTTT+TGG - chr1.4:19970979-19970998 None:intergenic 30.0%
!! TGTTCTGGAAAAATTAAAGG+TGG + chr1.4:19970301-19970320 MS.gene026347:CDS 30.0%
!!! ATTTTTGGTTTCAAAAGGGT+TGG + chr1.4:19969466-19969485 MS.gene026347:CDS 30.0%
!!! TCATGTTGATTTTCATGGAA+AGG - chr1.4:19969609-19969628 None:intergenic 30.0%
AAAAACTTCATTGCGGACAA+AGG + chr1.4:19970788-19970807 MS.gene026347:CDS 35.0%
AATCTATTCCCATTTCCGAA+GGG - chr1.4:19969005-19969024 None:intergenic 35.0%
AGCTTTCCATCTTGAAGAAT+TGG - chr1.4:19968784-19968803 None:intergenic 35.0%
ATAGTAACTCTTAGAGTAGC+TGG + chr1.4:19970658-19970677 MS.gene026347:intron 35.0%
ATTCTTCTTCAACTCTTGGA+TGG + chr1.4:19970256-19970275 MS.gene026347:CDS 35.0%
CAACCCAAAAAACTTCATTG+CGG + chr1.4:19970781-19970800 MS.gene026347:CDS 35.0%
CTCAATTTCTTATGTGGTTG+AGG - chr1.4:19969738-19969757 None:intergenic 35.0%
CTGGAAAAATTAAAGGTGGA+TGG + chr1.4:19970305-19970324 MS.gene026347:CDS 35.0%
GAGTACGACTAAAATCAATG+GGG + chr1.4:19969443-19969462 MS.gene026347:CDS 35.0%
GATACCAAAAGGTTTCACTA+AGG + chr1.4:19969356-19969375 MS.gene026347:CDS 35.0%
GGAAAGGATATTCAATCTCA+AGG - chr1.4:19969593-19969612 None:intergenic 35.0%
TAATCTATTCCCATTTCCGA+AGG - chr1.4:19969006-19969025 None:intergenic 35.0%
TAGTAACTCTTAGAGTAGCT+GGG + chr1.4:19970659-19970678 MS.gene026347:intron 35.0%
TCAAAGAGACAAAGACTTCT+CGG + chr1.4:19970556-19970575 MS.gene026347:CDS 35.0%
TGACATTCTTCTTCAACTCT+TGG + chr1.4:19970252-19970271 MS.gene026347:CDS 35.0%
TGATCAACAAAGTAGTGATG+AGG + chr1.4:19969641-19969660 MS.gene026347:CDS 35.0%
TGGAGTTGAATTTATCAGCT+TGG - chr1.4:19970842-19970861 None:intergenic 35.0%
TGGGATGCTAAATATTGTTC+TGG + chr1.4:19970286-19970305 MS.gene026347:CDS 35.0%
TGTCTTTGAGCTTATCAAGA+GGG + chr1.4:19971221-19971240 MS.gene026347:CDS 35.0%
TTCATGGTAATCCTGAAAGA+AGG - chr1.4:19970056-19970075 None:intergenic 35.0%
TTCGACTTCGAAATTTCCAT+TGG - chr1.4:19969877-19969896 None:intergenic 35.0%
! AAACAAGTTGGATTACCTTG+AGG - chr1.4:19970457-19970476 None:intergenic 35.0%
! ATTTCCCAATTTTTGCCATC+TGG - chr1.4:19969423-19969442 None:intergenic 35.0%
! CAGATGGTGATGTTAAAGTT+TGG + chr1.4:19971084-19971103 MS.gene026347:CDS 35.0%
! GTTCATTTTCCTAGAGGATA+CGG + chr1.4:19969917-19969936 MS.gene026347:intron 35.0%
! TGAGGACTCCATTGAAATTT+TGG + chr1.4:19969659-19969678 MS.gene026347:CDS 35.0%
! TTCATTTTCCTAGAGGATAC+GGG + chr1.4:19969918-19969937 MS.gene026347:intron 35.0%
!! CTAGTTTTCTTCTTGCATGA+AGG - chr1.4:19969693-19969712 None:intergenic 35.0%
!! GGACACATAATTGGTGATTT+TGG - chr1.4:19969717-19969736 None:intergenic 35.0%
!! TAGAGGTTGGAAGCTATTTT+GGG + chr1.4:19971167-19971186 MS.gene026347:CDS 35.0%
!!! CAAAGTAAGGTATTGGCTTT+TGG - chr1.4:19970389-19970408 None:intergenic 35.0%
!!! CTAGCTCGTGCTTTATTTTT+CGG - chr1.4:19969959-19969978 None:intergenic 35.0%
!!! GGGGATTTTTGGTTTCAAAA+GGG + chr1.4:19969462-19969481 MS.gene026347:CDS 35.0%
!!! TGGGGATTTTTGGTTTCAAA+AGG + chr1.4:19969461-19969480 MS.gene026347:CDS 35.0%
!!! TGTCCGCAATGAAGTTTTTT+GGG - chr1.4:19970787-19970806 None:intergenic 35.0%
!!! TTGTCCGCAATGAAGTTTTT+TGG - chr1.4:19970788-19970807 None:intergenic 35.0%
AACGAATAGTAGAAGCAGAG+AGG - chr1.4:19968741-19968760 None:intergenic 40.0%
AACTCTTGGATGGAAGAGTT+TGG + chr1.4:19970266-19970285 MS.gene026347:CDS 40.0%
AAGCATCATGTCCAATCTAG+TGG + chr1.4:19969810-19969829 MS.gene026347:CDS 40.0%
ACCACACCAATTCTTCAAGA+TGG + chr1.4:19968775-19968794 MS.gene026347:CDS 40.0%
ACGAATAGTAGAAGCAGAGA+GGG - chr1.4:19968740-19968759 None:intergenic 40.0%
ACTCTTGGATGGAAGAGTTT+GGG + chr1.4:19970267-19970286 MS.gene026347:CDS 40.0%
AGACTCCAGATGGCAAAAAT+TGG + chr1.4:19969415-19969434 MS.gene026347:CDS 40.0%
ATGTTTCTCAAGACTCCAGA+TGG + chr1.4:19969405-19969424 MS.gene026347:CDS 40.0%
CAAAAAGCAATACCAAGAGC+AGG + chr1.4:19969992-19970011 MS.gene026347:CDS 40.0%
CTAGATTGGACATGATGCTT+AGG - chr1.4:19969810-19969829 None:intergenic 40.0%
CTTGGATAACAAGGAACAGA+TGG + chr1.4:19971068-19971087 MS.gene026347:CDS 40.0%
GACTCCAGATGGCAAAAATT+GGG + chr1.4:19969416-19969435 MS.gene026347:CDS 40.0%
GCGTTGTAGATGATACCAAA+AGG + chr1.4:19969345-19969364 MS.gene026347:intron 40.0%
GGTTATTCGACCCATCTTTA+GGG - chr1.4:19969038-19969057 None:intergenic 40.0%
GTGTCTTTGAGCTTATCAAG+AGG + chr1.4:19971220-19971239 MS.gene026347:CDS 40.0%
TATTTAACTGCTCCTGCTCT+TGG - chr1.4:19970007-19970026 None:intergenic 40.0%
TCCATCTTGAAGAATTGGTG+TGG - chr1.4:19968779-19968798 None:intergenic 40.0%
TGTGGTTGAGGACACATAAT+TGG - chr1.4:19969726-19969745 None:intergenic 40.0%
TTGAGAAGTGACTCAAGTGA+AGG + chr1.4:19969753-19969772 MS.gene026347:CDS 40.0%
TTGGTATCATCTACAACGCA+TGG - chr1.4:19969344-19969363 None:intergenic 40.0%
! AAACTGGCCTGATTTCATGT+TGG - chr1.4:19971145-19971164 None:intergenic 40.0%
! CATGATGCTTAGGCAAGTTT+TGG - chr1.4:19969800-19969819 None:intergenic 40.0%
! GTAGAGGTTGGAAGCTATTT+TGG + chr1.4:19971166-19971185 MS.gene026347:CDS 40.0%
! TCTGGAGTCTTGAGAAACAT+TGG - chr1.4:19969405-19969424 None:intergenic 40.0%
! TGGTCCTTAGTGAAACCTTT+TGG - chr1.4:19969363-19969382 None:intergenic 40.0%
!! AAATCAGGCCAGTTTTGTAG+AGG + chr1.4:19971150-19971169 MS.gene026347:CDS 40.0%
!! TGTTTTTGTCGCGTTATGAC+AGG + chr1.4:19970750-19970769 MS.gene026347:intron 40.0%
!! TTCAATCTCAAGGGTACTCT+TGG - chr1.4:19969583-19969602 None:intergenic 40.0%
GCTTCCAACCTCTACAAAAC+TGG - chr1.4:19971161-19971180 None:intergenic 45.0%
GGGTTATTCGACCCATCTTT+AGG - chr1.4:19969039-19969058 None:intergenic 45.0%
TTCACTAGATCATGGGCACA+TGG + chr1.4:19969509-19969528 MS.gene026347:CDS 45.0%
TTGGATTACCTTGAGGTGGA+GGG - chr1.4:19970450-19970469 None:intergenic 45.0%
! AGTGACTCAAGTGAAGGTGT+TGG + chr1.4:19969759-19969778 MS.gene026347:CDS 45.0%
! CAAGTTGGATTACCTTGAGG+TGG - chr1.4:19970454-19970473 None:intergenic 45.0%
! CAGCCCGCAAACAAATTTTG+AGG + chr1.4:19970706-19970725 MS.gene026347:intron 45.0%
! CTAGAATGCCCTCGTTGATT+TGG - chr1.4:19970894-19970913 None:intergenic 45.0%
! GCATCGATGTTCTGCACATA+TGG + chr1.4:19970622-19970641 MS.gene026347:intron 45.0%
! TGGGACTGATTTCTCTACGA+GGG + chr1.4:19970678-19970697 MS.gene026347:intron 45.0%
!! TCAACGAGGGCATTCTAGAT+TGG + chr1.4:19970896-19970915 MS.gene026347:CDS 45.0%
GTTGGATTACCTTGAGGTGG+AGG - chr1.4:19970451-19970470 None:intergenic 50.0%
TCGCGTTATGACAGGAGAGA+AGG + chr1.4:19970758-19970777 MS.gene026347:intron 50.0%
TGGATTACCTTGAGGTGGAG+GGG - chr1.4:19970449-19970468 None:intergenic 50.0%
! CTGGGACTGATTTCTCTACG+AGG + chr1.4:19970677-19970696 MS.gene026347:intron 50.0%
!! CAGGCCAGTTTTGTAGAGGT+TGG + chr1.4:19971154-19971173 MS.gene026347:CDS 50.0%
CGCTAGCACCCGTATCCTCT+AGG - chr1.4:19969929-19969948 None:intergenic 60.0%
CCACACACCCCTCCACCTCA+AGG + chr1.4:19970439-19970458 MS.gene026347:CDS 65.0%
! CCTTGAGGTGGAGGGGTGTG+TGG - chr1.4:19970442-19970461 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 19968709 19971284 19968709 ID=MS.gene026347
chr1.4 mRNA 19968709 19971284 19968709 ID=MS.gene026347.t1;Parent=MS.gene026347
chr1.4 exon 19968709 19968804 19968709 ID=MS.gene026347.t1.exon1;Parent=MS.gene026347.t1
chr1.4 CDS 19968709 19968804 19968709 ID=cds.MS.gene026347.t1;Parent=MS.gene026347.t1
chr1.4 exon 19969354 19969831 19969354 ID=MS.gene026347.t1.exon2;Parent=MS.gene026347.t1
chr1.4 CDS 19969354 19969831 19969354 ID=cds.MS.gene026347.t1;Parent=MS.gene026347.t1
chr1.4 exon 19969931 19970103 19969931 ID=MS.gene026347.t1.exon3;Parent=MS.gene026347.t1
chr1.4 CDS 19969931 19970103 19969931 ID=cds.MS.gene026347.t1;Parent=MS.gene026347.t1
chr1.4 exon 19970205 19970460 19970205 ID=MS.gene026347.t1.exon4;Parent=MS.gene026347.t1
chr1.4 CDS 19970205 19970460 19970205 ID=cds.MS.gene026347.t1;Parent=MS.gene026347.t1
chr1.4 exon 19970555 19970611 19970555 ID=MS.gene026347.t1.exon5;Parent=MS.gene026347.t1
chr1.4 CDS 19970555 19970611 19970555 ID=cds.MS.gene026347.t1;Parent=MS.gene026347.t1
chr1.4 exon 19970772 19970917 19970772 ID=MS.gene026347.t1.exon6;Parent=MS.gene026347.t1
chr1.4 CDS 19970772 19970917 19970772 ID=cds.MS.gene026347.t1;Parent=MS.gene026347.t1
chr1.4 exon 19971039 19971284 19971039 ID=MS.gene026347.t1.exon7;Parent=MS.gene026347.t1
chr1.4 CDS 19971039 19971284 19971039 ID=cds.MS.gene026347.t1;Parent=MS.gene026347.t1
Gene Sequence

>MS.gene026347

ATGACTAGCAATAAGGGAACTAAGCATACCCTCTCTGCTTCTACTATTCGTTTCTTTAGAGTTATTACCACACCAATTCTTCAAGATGGAAAGCTTGTAAGTTATTAGTACTTTTTTCCTTCATATTATGTTTTTTAATTTGTTCTGCACATTTGGTTTTCTCTTTTGAATTTTCACTTCATGATGGTACAAAGCTTGTAAGTTATTAGTACATTTTGTTATTTCTTTTTAGCGTATTATTTTTCTCTCTAAAAGTTTTAACTTGGGGAAAAGCAGAAATAGACAAAAATTAACCCTTCGGAAATGGGAATAGATTATATTTTCAACCCTAAAGATGGGTCGAATAACCCGTTTCGTCATCTACAAATAAAAAGACATTTGAACAATTTCTCTTATGGTCATGTTAACAAATGTTCTTGGAGGACGTGTTATGTGTTTAAAAAATGAAACAATTGACAGCTTTAATTTGAAAATAGTTGTTTGTTAAAATTTCAATGTGTTGAATACATAAATCGTAAGATAAAATTTGCACGTTGAACATTTTCACATGTGTTTTTATGACATTTGTTAACATTTCTCTTTCTTTTATATTGCTTGTGAATTTCTTTATATGTATGCTAACATAAGGAATTCCATGCGTTGTAGATGATACCAAAAGGTTTCACTAAGGACCATATGAATGACATGTCAAATCCAATGTTTCTCAAGACTCCAGATGGCAAAAATTGGGAAATGAGTACGACTAAAATCAATGGGGATTTTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTACACATTATTCACTAGATCATGGGCACATGGTATTATTTCAATATGAAGAAAACTCTCATTTTGTGGTGCATATATTTTCCAAGAGTACCCTTGAGATTGAATATCCTTTCCATGAAAATCAACATGAACAAAGCAACTTTGATCAACAAAGTAGTGATGAGGACTCCATTGAAATTTTGGACAAGTCACCTTCATGCAAGAAGAAAACTAGACCAAAATCACCAATTATGTGTCCTCAACCACATAAGAAATTGAGAAGTGACTCAAGTGAAGGTGTTGGAACAAGCTCGAGATTCCAAAACTTGCCTAAGCATCATGTCCAATCTAGTGGTATAATTCTTGATCAAATTCATTCTTTATCTTTTAATTTATCCAATGGAAATTTCGAAGTCGAATGTTCATAAACATCTATGTTGTTCATTTTCCTAGAGGATACGGGTGCTAGCGCTGAATTCCGAAAAATAAAGCACGAGCTAGAACAAGATCAAGACAAAAAGCAATACCAAGAGCAGGAGCAGTTAAATAGAGTTAGAAGCTTCAAATCAAATAATCCTTCTTTCAGGATTACCATGAAGTCTTCACATATTTATAGTCATTCCTTGGTGAGTCTTTGATTAATTTTGATTTTTATGTTAATATCTTCATTTGAAGCCAAAGTATATGCATTGAACTTTGAAAACGATGTTAACATTTACAATAACAGTATGTCCCATCACAATTTGCTAACAATCATATGAAGAAAGAGCAAAGTGACATTCTTCTTCAACTCTTGGATGGAAGAGTTTGGGATGCTAAATATTGTTCTGGAAAAATTAAAGGTGGATGGAAGAAATTTGCAGTACACAACAAGTTGAAAATTGGGGATGTGTGTATTTTTGAACTAACCAAAAGCCAATACCTTACTTTGAAAGTAATAATATTTAGACTTGAGGAAGATCCACACACCCCTCCACCTCAAGGTAATCCAACTTGTTTTTTCTTTGGAAGTATTTTCCTTTATTACCTTGTTTTATCTTCAAAATAATGGTTGCACTTTTTTCCCTTTAGAATCAGTTCAAAGAGACAAAGACTTCTCGGATGTTGAAAGTGAAACTATTATAACAAATAAAGGTAAATTCTAGCATCGATGTTCTGCACATATGGCGAACTACTAATTATAGTAACTCTTAGAGTAGCTGGGACTGATTTCTCTACGAGGGAGAATCAGCCCGCAAACAAATTTTGAGGAATCAAATTGATAAACTGAGTTGTTTTTGTCGCGTTATGACAGGAGAGAAGGCAACCCAAAAAACTTCATTGCGGACAAAGGCTGAATTCTTTACTAATGAAGCTGAGAACCAAGCTGATAAATTCAACTCCAAATATCCATTTTTCAAGGTCAATATTATGCCAAATCAACGAGGGCATTCTAGATTGGTAATGTTTATTATAATGAAAATATATCATATTATATGAAAATTTTGTATTATGCAAACCAAAAAGTGCTGTTATACTTTCAATTTTCATTAACCGTTAAAATGTTACTTGACTGATGCAGCATGTACCAAATTCCTTCATTACAAATTACTTGGATAACAAGGAACAGATGGTGATGTTAAAGTTTGGGAAGAAATTGTGGCCTGTAAAGTTGCATTGTTATTCCAACATGAAATCAGGCCAGTTTTGTAGAGGTTGGAAGCTATTTTGGGAAGAAAATAAATTGAAAGGTGGAGATGCATGTGTCTTTGAGCTTATCAAGAGGGAAGATGTTGTGCTTAATGTTCATATTTTCAGAGGCAATTGA
Protein sequence

>MS.gene026347.t1

MTSNKGTKHTLSASTIRFFRVITTPILQDGKLMIPKGFTKDHMNDMSNPMFLKTPDGKNWEMSTTKINGDFWFQKGWKEFATHYSLDHGHMVLFQYEENSHFVVHIFSKSTLEIEYPFHENQHEQSNFDQQSSDEDSIEILDKSPSCKKKTRPKSPIMCPQPHKKLRSDSSEGVGTSSRFQNLPKHHVQSSEDTGASAEFRKIKHELEQDQDKKQYQEQEQLNRVRSFKSNNPSFRITMKSSHIYSHSLYVPSQFANNHMKKEQSDILLQLLDGRVWDAKYCSGKIKGGWKKFAVHNKLKIGDVCIFELTKSQYLTLKVIIFRLEEDPHTPPPQVQRDKDFSDVESETIITNKGEKATQKTSLRTKAEFFTNEAENQADKFNSKYPFFKVNIMPNQRGHSRLHVPNSFITNYLDNKEQMVMLKFGKKLWPVKLHCYSNMKSGQFCRGWKLFWEENKLKGGDACVFELIKREDVVLNVHIFRGN