Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026359.t1 | XP_013442314.1 | 87.9 | 232 | 8 | 2 | 1 | 212 | 1 | 232 | 2.30E-109 | 405.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026359.t1 | Q700D9 | 64.6 | 79 | 17 | 2 | 1 | 68 | 1 | 79 | 6.5e-20 | 99.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026359.t1 | A0A072TFN8 | 87.9 | 232 | 8 | 2 | 1 | 212 | 1 | 232 | 1.7e-109 | 405.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026359.t1 | TF | GARP-G2-like |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026359.t1 | MTR_0223s0040 | 87.931 | 232 | 8 | 2 | 1 | 212 | 1 | 232 | 1.45e-148 | 416 |
MS.gene026359.t1 | MTR_1g112370 | 42.697 | 267 | 87 | 11 | 2 | 203 | 3 | 268 | 6.52e-49 | 164 |
MS.gene026359.t1 | MTR_2g023580 | 69.697 | 66 | 14 | 1 | 9 | 68 | 46 | 111 | 1.49e-25 | 101 |
MS.gene026359.t1 | MTR_2g084230 | 61.842 | 76 | 23 | 1 | 5 | 74 | 84 | 159 | 1.08e-24 | 100 |
MS.gene026359.t1 | MTR_2g084230 | 61.842 | 76 | 23 | 1 | 5 | 74 | 84 | 159 | 1.34e-24 | 101 |
MS.gene026359.t1 | MTR_8g086410 | 60.000 | 75 | 24 | 1 | 6 | 74 | 99 | 173 | 7.99e-24 | 99.8 |
MS.gene026359.t1 | MTR_8g086410 | 60.000 | 75 | 24 | 1 | 6 | 74 | 97 | 171 | 8.26e-24 | 99.8 |
MS.gene026359.t1 | MTR_2g016220 | 61.333 | 75 | 23 | 1 | 6 | 74 | 77 | 151 | 5.32e-23 | 97.1 |
MS.gene026359.t1 | MTR_2g016220 | 61.333 | 75 | 23 | 1 | 6 | 74 | 77 | 151 | 5.48e-23 | 97.1 |
MS.gene026359.t1 | MTR_8g086410 | 54.878 | 82 | 24 | 1 | 6 | 74 | 99 | 180 | 7.58e-23 | 97.1 |
MS.gene026359.t1 | MTR_2g016220 | 58.228 | 79 | 23 | 1 | 6 | 74 | 77 | 155 | 1.73e-22 | 95.5 |
MS.gene026359.t1 | MTR_7g069660 | 56.944 | 72 | 25 | 1 | 3 | 68 | 56 | 127 | 7.12e-22 | 93.6 |
MS.gene026359.t1 | MTR_3g450310 | 55.714 | 70 | 24 | 2 | 6 | 69 | 8 | 76 | 2.11e-18 | 81.6 |
MS.gene026359.t1 | MTR_6g071625 | 44.186 | 86 | 42 | 1 | 17 | 96 | 201 | 286 | 5.69e-16 | 77.0 |
MS.gene026359.t1 | MTR_8g066310 | 56.897 | 58 | 19 | 1 | 17 | 68 | 172 | 229 | 4.22e-15 | 74.3 |
MS.gene026359.t1 | MTR_5g029470 | 41.026 | 117 | 51 | 4 | 17 | 118 | 218 | 331 | 5.03e-15 | 74.3 |
MS.gene026359.t1 | MTR_1g080330 | 58.929 | 56 | 17 | 1 | 19 | 68 | 176 | 231 | 2.49e-14 | 72.4 |
MS.gene026359.t1 | MTR_3g064840 | 55.172 | 58 | 20 | 1 | 17 | 68 | 273 | 330 | 2.58e-14 | 72.4 |
MS.gene026359.t1 | MTR_1g080330 | 58.929 | 56 | 17 | 1 | 19 | 68 | 176 | 231 | 3.18e-14 | 71.2 |
MS.gene026359.t1 | MTR_1g021520 | 50.746 | 67 | 26 | 2 | 9 | 68 | 116 | 182 | 5.79e-14 | 70.5 |
MS.gene026359.t1 | MTR_7g115530 | 57.143 | 56 | 18 | 1 | 19 | 68 | 219 | 274 | 6.16e-14 | 70.5 |
MS.gene026359.t1 | MTR_7g098250 | 57.143 | 56 | 18 | 1 | 19 | 68 | 263 | 318 | 6.29e-14 | 71.6 |
MS.gene026359.t1 | MTR_7g115530 | 57.143 | 56 | 18 | 1 | 19 | 68 | 219 | 274 | 7.38e-14 | 71.2 |
MS.gene026359.t1 | MTR_7g115530 | 57.143 | 56 | 18 | 1 | 19 | 68 | 219 | 274 | 9.75e-14 | 70.5 |
MS.gene026359.t1 | MTR_5g027440 | 39.000 | 100 | 49 | 2 | 5 | 100 | 12 | 103 | 1.11e-13 | 69.7 |
MS.gene026359.t1 | MTR_5g060610 | 54.688 | 64 | 14 | 2 | 1 | 63 | 1 | 50 | 1.17e-13 | 64.3 |
MS.gene026359.t1 | MTR_7g115530 | 64.444 | 45 | 16 | 0 | 19 | 63 | 219 | 263 | 1.40e-13 | 69.3 |
MS.gene026359.t1 | MTR_7g115530 | 64.444 | 45 | 16 | 0 | 19 | 63 | 219 | 263 | 2.28e-13 | 68.9 |
MS.gene026359.t1 | MTR_7g115530 | 57.143 | 56 | 18 | 1 | 19 | 68 | 219 | 274 | 2.37e-13 | 69.3 |
MS.gene026359.t1 | MTR_6g444980 | 38.532 | 109 | 65 | 2 | 19 | 126 | 36 | 143 | 2.86e-13 | 69.3 |
MS.gene026359.t1 | MTR_6g444980 | 38.532 | 109 | 65 | 2 | 19 | 126 | 36 | 143 | 3.63e-13 | 68.9 |
MS.gene026359.t1 | MTR_6g032990 | 57.778 | 45 | 19 | 0 | 19 | 63 | 43 | 87 | 6.76e-12 | 65.1 |
MS.gene026359.t1 | MTR_5g041350 | 55.556 | 45 | 20 | 0 | 19 | 63 | 16 | 60 | 1.03e-11 | 64.7 |
MS.gene026359.t1 | MTR_1g090670 | 43.902 | 82 | 38 | 2 | 19 | 92 | 45 | 126 | 2.39e-11 | 63.2 |
MS.gene026359.t1 | MTR_2g086450 | 55.556 | 45 | 20 | 0 | 19 | 63 | 46 | 90 | 2.82e-11 | 63.5 |
MS.gene026359.t1 | MTR_7g093030 | 31.098 | 164 | 86 | 7 | 14 | 150 | 208 | 371 | 6.30e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026359.t1 | AT1G14600 | 64.557 | 79 | 17 | 2 | 1 | 68 | 1 | 79 | 1.43e-25 | 101 |
MS.gene026359.t1 | AT2G02060 | 72.581 | 62 | 11 | 1 | 10 | 65 | 21 | 82 | 2.45e-24 | 98.6 |
MS.gene026359.t1 | AT2G02060 | 72.581 | 62 | 11 | 1 | 10 | 65 | 21 | 82 | 2.45e-24 | 98.6 |
MS.gene026359.t1 | AT4G04605 | 59.459 | 74 | 24 | 1 | 9 | 76 | 5 | 78 | 1.65e-23 | 95.5 |
MS.gene026359.t1 | AT2G40260 | 60.759 | 79 | 24 | 2 | 8 | 80 | 72 | 149 | 1.11e-22 | 96.7 |
MS.gene026359.t1 | AT2G38300 | 58.571 | 70 | 29 | 0 | 10 | 79 | 46 | 115 | 6.46e-21 | 90.9 |
MS.gene026359.t1 | AT2G42660 | 60.317 | 63 | 19 | 1 | 10 | 66 | 42 | 104 | 1.36e-19 | 85.9 |
MS.gene026359.t1 | AT4G04555 | 45.333 | 75 | 35 | 1 | 6 | 74 | 2 | 76 | 8.77e-16 | 71.6 |
MS.gene026359.t1 | AT5G16560 | 44.444 | 81 | 38 | 2 | 17 | 91 | 218 | 297 | 6.84e-15 | 74.3 |
MS.gene026359.t1 | AT1G32240 | 55.172 | 58 | 20 | 1 | 17 | 68 | 212 | 269 | 1.54e-14 | 73.2 |
MS.gene026359.t1 | AT1G32240 | 55.172 | 58 | 20 | 1 | 17 | 68 | 212 | 269 | 1.60e-14 | 72.8 |
MS.gene026359.t1 | AT5G42630 | 51.724 | 58 | 22 | 1 | 17 | 68 | 104 | 161 | 4.09e-14 | 70.1 |
MS.gene026359.t1 | AT4G17695 | 50.847 | 59 | 23 | 1 | 17 | 69 | 163 | 221 | 4.72e-14 | 71.2 |
MS.gene026359.t1 | AT5G42630 | 51.724 | 58 | 22 | 1 | 17 | 68 | 104 | 161 | 4.95e-14 | 70.5 |
MS.gene026359.t1 | AT4G04580 | 50.000 | 64 | 26 | 1 | 9 | 66 | 5 | 68 | 5.20e-13 | 65.9 |
MS.gene026359.t1 | AT4G28610 | 54.545 | 55 | 19 | 1 | 20 | 68 | 227 | 281 | 1.13e-12 | 67.8 |
MS.gene026359.t1 | AT4G13640 | 32.895 | 152 | 77 | 5 | 19 | 150 | 38 | 184 | 6.32e-12 | 64.7 |
MS.gene026359.t1 | AT5G29000 | 52.727 | 55 | 20 | 1 | 20 | 68 | 190 | 244 | 7.50e-12 | 65.1 |
MS.gene026359.t1 | AT5G29000 | 52.727 | 55 | 20 | 1 | 20 | 68 | 190 | 244 | 7.50e-12 | 65.1 |
MS.gene026359.t1 | AT5G45580 | 58.000 | 50 | 21 | 0 | 14 | 63 | 3 | 52 | 7.56e-12 | 64.3 |
MS.gene026359.t1 | AT3G04450 | 52.727 | 55 | 20 | 1 | 20 | 68 | 240 | 294 | 7.57e-12 | 64.7 |
MS.gene026359.t1 | AT5G45580 | 58.000 | 50 | 21 | 0 | 14 | 63 | 19 | 68 | 8.79e-12 | 64.3 |
MS.gene026359.t1 | AT5G29000 | 52.727 | 55 | 20 | 1 | 20 | 68 | 233 | 287 | 9.00e-12 | 65.1 |
MS.gene026359.t1 | AT5G29000 | 52.727 | 55 | 20 | 1 | 20 | 68 | 233 | 287 | 1.09e-11 | 64.3 |
MS.gene026359.t1 | AT4G13640 | 35.172 | 145 | 77 | 6 | 19 | 151 | 38 | 177 | 1.32e-11 | 63.9 |
MS.gene026359.t1 | AT3G12730 | 60.000 | 45 | 18 | 0 | 19 | 63 | 24 | 68 | 1.47e-11 | 63.2 |
MS.gene026359.t1 | AT1G79430 | 33.945 | 109 | 70 | 2 | 19 | 126 | 35 | 142 | 3.86e-11 | 62.8 |
MS.gene026359.t1 | AT3G24120 | 60.000 | 45 | 18 | 0 | 19 | 63 | 42 | 86 | 4.52e-11 | 62.4 |
MS.gene026359.t1 | AT3G24120 | 60.000 | 45 | 18 | 0 | 19 | 63 | 42 | 86 | 4.74e-11 | 62.4 |
Find 50 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCCATGGTCGCCGCCATTT+TGG | 0.247597 | 1.1:-19569604 | MS.gene026359:CDS |
CTTCAGTTGATGGATGTTAA+AGG | 0.259007 | 1.1:-19578213 | MS.gene026359:CDS |
TAAGCTTGTTCTTCAGTTGA+TGG | 0.287799 | 1.1:-19578223 | MS.gene026359:CDS |
GAACAAATCAGTTTCTTGTT+TGG | 0.311474 | 1.1:+19576640 | None:intergenic |
CCTAAATCAGGGATCCAAAA+TGG | 0.336559 | 1.1:+19569590 | None:intergenic |
AACAAATCAGTTTCTTGTTT+GGG | 0.342359 | 1.1:+19576641 | None:intergenic |
ACAGAAATTTCTCCCCAAAA+AGG | 0.367281 | 1.1:-19577462 | MS.gene026359:intron |
GTTTATGCCATTGAAACTCT+TGG | 0.378805 | 1.1:-19578389 | MS.gene026359:CDS |
ATATTCTTTCTCTGCATTCA+AGG | 0.392029 | 1.1:+19576813 | None:intergenic |
GCAACAGCAGAAGGGAATAA+AGG | 0.396273 | 1.1:-19576732 | MS.gene026359:CDS |
TTTGTTGTGTTGGTTCAATA+TGG | 0.396998 | 1.1:-19576706 | MS.gene026359:CDS |
TTCAGTTGATGGATGTTAAA+GGG | 0.399431 | 1.1:-19578212 | MS.gene026359:CDS |
ACAAAGCAACGATGAAGTTC+AGG | 0.401903 | 1.1:+19578410 | None:intergenic |
TTTAGAGATCATGAATCTCT+TGG | 0.412921 | 1.1:-19577511 | MS.gene026359:CDS |
TTTGTTTAAACCAGATGTAT+AGG | 0.415716 | 1.1:-19578071 | MS.gene026359:intron |
CAAAGGTTCCTCGTTTAAGA+TGG | 0.432536 | 1.1:-19578436 | MS.gene026359:CDS |
ATGACCACCAAGAGTTTCAA+TGG | 0.434104 | 1.1:+19578382 | None:intergenic |
ACAAGAAACTGATTTGTTCC+AGG | 0.436372 | 1.1:-19576636 | MS.gene026359:intron |
GGAAAGATTGTGAAATATTG+AGG | 0.465565 | 1.1:+19576671 | None:intergenic |
GAGAAGAGAAATTCCCTCTC+AGG | 0.479292 | 1.1:-19576839 | MS.gene026359:CDS |
GAGAGGTGACTCATGCAAAC+AGG | 0.484223 | 1.1:-19578043 | MS.gene026359:intron |
TTCTGGAGCATGATGATGAT+GGG | 0.488907 | 1.1:-19577534 | MS.gene026359:intron |
GTTTCTTGTTTGGGTAGCAC+AGG | 0.498612 | 1.1:+19576650 | None:intergenic |
ATAAAGGAGATTTGTTGTGT+TGG | 0.503985 | 1.1:-19576716 | MS.gene026359:CDS |
ATCAACTGAAGAACAAGCTT+AGG | 0.508937 | 1.1:+19578225 | None:intergenic |
ATTGTGAAATATTGAGGTTG+AGG | 0.511226 | 1.1:+19576677 | None:intergenic |
TTTCTGGAGCATGATGATGA+TGG | 0.516346 | 1.1:-19577535 | MS.gene026359:intron |
TGTGGAGATGGTGAAGAGTT+GGG | 0.516867 | 1.1:+19569644 | None:intergenic |
TTGTGGAGATGGTGAAGAGT+TGG | 0.522349 | 1.1:+19569643 | None:intergenic |
CATGGTTCAGCAACAGCAGA+AGG | 0.534523 | 1.1:-19576741 | MS.gene026359:CDS |
CAGAAGATGAAGAAGATACA+AGG | 0.540102 | 1.1:-19574992 | MS.gene026359:CDS |
ATGAGTAGTTGTGGAAGGGA+AGG | 0.542254 | 1.1:-19578482 | MS.gene026359:CDS |
TTATGATTATGTGCAGGACA+TGG | 0.561583 | 1.1:-19576759 | MS.gene026359:CDS |
ATCCAAAATGGCGGCGACCA+TGG | 0.568768 | 1.1:+19569602 | None:intergenic |
AGATCATGAATCTCTTGGAA+TGG | 0.569091 | 1.1:-19577506 | MS.gene026359:CDS |
ACAATAGGTGAATCTGAAGA+TGG | 0.571716 | 1.1:-19570064 | MS.gene026359:intron |
GCATTCAAGGATTCCTGAGA+GGG | 0.578921 | 1.1:+19576826 | None:intergenic |
CAGATGCGATGTTGTGGAGA+TGG | 0.589187 | 1.1:+19569632 | None:intergenic |
GAGACAATATGTAAGATCAA+AGG | 0.602756 | 1.1:-19578453 | MS.gene026359:CDS |
TCAAATCAACGAAGTACCAA+AGG | 0.617123 | 1.1:-19569999 | MS.gene026359:intron |
TATGCCATTGAAACTCTTGG+TGG | 0.619663 | 1.1:-19578386 | MS.gene026359:CDS |
CAGATGTATAGGAGTATGAG+AGG | 0.628713 | 1.1:-19578060 | MS.gene026359:CDS |
TGCATTCAAGGATTCCTGAG+AGG | 0.645375 | 1.1:+19576825 | None:intergenic |
ATGGTTCAGCAACAGCAGAA+GGG | 0.660060 | 1.1:-19576740 | MS.gene026359:CDS |
ATCGCATCTGCAGATAGCCA+TGG | 0.662624 | 1.1:-19569619 | MS.gene026359:CDS |
TATCTGCAGATGCGATGTTG+TGG | 0.671429 | 1.1:+19569626 | None:intergenic |
AGAAGATGAAGAAGATACAA+GGG | 0.682426 | 1.1:-19574991 | MS.gene026359:CDS |
AAATCAGGGATCCAAAATGG+CGG | 0.703615 | 1.1:+19569593 | None:intergenic |
GAAGATGAAGAAGATACAAG+GGG | 0.705761 | 1.1:-19574990 | MS.gene026359:CDS |
TCAGGTGTCCATCTTAAACG+AGG | 0.752182 | 1.1:+19578428 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 19569596 | 19578504 | 19569596 | ID=MS.gene026359 |
chr1.1 | mRNA | 19569596 | 19578504 | 19569596 | ID=MS.gene026359.t1;Parent=MS.gene026359 |
chr1.1 | exon | 19578378 | 19578504 | 19578378 | ID=MS.gene026359.t1.exon1;Parent=MS.gene026359.t1 |
chr1.1 | CDS | 19578378 | 19578504 | 19578378 | ID=cds.MS.gene026359.t1;Parent=MS.gene026359.t1 |
chr1.1 | exon | 19578197 | 19578255 | 19578197 | ID=MS.gene026359.t1.exon2;Parent=MS.gene026359.t1 |
chr1.1 | CDS | 19578197 | 19578255 | 19578197 | ID=cds.MS.gene026359.t1;Parent=MS.gene026359.t1 |
chr1.1 | exon | 19578044 | 19578079 | 19578044 | ID=MS.gene026359.t1.exon3;Parent=MS.gene026359.t1 |
chr1.1 | CDS | 19578044 | 19578079 | 19578044 | ID=cds.MS.gene026359.t1;Parent=MS.gene026359.t1 |
chr1.1 | exon | 19577463 | 19577548 | 19577463 | ID=MS.gene026359.t1.exon4;Parent=MS.gene026359.t1 |
chr1.1 | CDS | 19577463 | 19577548 | 19577463 | ID=cds.MS.gene026359.t1;Parent=MS.gene026359.t1 |
chr1.1 | exon | 19576637 | 19576871 | 19576637 | ID=MS.gene026359.t1.exon5;Parent=MS.gene026359.t1 |
chr1.1 | CDS | 19576637 | 19576871 | 19576637 | ID=cds.MS.gene026359.t1;Parent=MS.gene026359.t1 |
chr1.1 | exon | 19574988 | 19575075 | 19574988 | ID=MS.gene026359.t1.exon6;Parent=MS.gene026359.t1 |
chr1.1 | CDS | 19574988 | 19575075 | 19574988 | ID=cds.MS.gene026359.t1;Parent=MS.gene026359.t1 |
chr1.1 | exon | 19570000 | 19570079 | 19570000 | ID=MS.gene026359.t1.exon7;Parent=MS.gene026359.t1 |
chr1.1 | CDS | 19570000 | 19570079 | 19570000 | ID=cds.MS.gene026359.t1;Parent=MS.gene026359.t1 |
chr1.1 | exon | 19569596 | 19569679 | 19569596 | ID=MS.gene026359.t1.exon8;Parent=MS.gene026359.t1 |
chr1.1 | CDS | 19569596 | 19569679 | 19569596 | ID=cds.MS.gene026359.t1;Parent=MS.gene026359.t1 |
Gene Sequence |
Protein sequence |