AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026367

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026367.t1 MTR_1g047060 50.505 99 40 2 112 210 3 92 3.44e-24 93.2
MS.gene026367.t1 MTR_4g101680 33.962 159 82 6 4 148 7 156 1.51e-17 81.3
MS.gene026367.t1 MTR_2g080010 33.333 165 87 6 4 161 15 163 2.02e-17 80.5
MS.gene026367.t1 MTR_5g041940 31.481 162 85 6 4 148 3 155 2.02e-17 79.3
MS.gene026367.t1 MTR_6g477900 32.704 159 85 7 4 148 6 156 2.36e-17 79.0
MS.gene026367.t1 MTR_5g012080 32.919 161 83 8 4 148 7 158 5.44e-17 79.3
MS.gene026367.t1 MTR_5g021710 32.692 156 88 5 4 148 8 157 7.10e-17 79.0
MS.gene026367.t1 MTR_4g081870 31.481 162 85 7 4 148 9 161 1.10e-16 77.8
MS.gene026367.t1 MTR_1g008740 33.333 162 90 6 2 151 25 180 1.14e-16 78.6
MS.gene026367.t1 MTR_1g096430 26.860 242 147 7 4 224 7 239 1.17e-16 78.6
MS.gene026367.t1 MTR_4g094302 30.978 184 102 8 4 173 11 183 1.23e-16 75.9
MS.gene026367.t1 MTR_2g093810 32.738 168 87 6 4 154 14 172 1.23e-16 78.2
MS.gene026367.t1 MTR_1g008740 33.333 162 90 6 2 151 11 166 1.37e-16 78.2
MS.gene026367.t1 MTR_3g093040 30.055 183 92 9 4 168 108 272 3.05e-16 77.0
MS.gene026367.t1 MTR_5g014300 29.126 206 116 9 4 188 6 202 3.40e-16 77.0
MS.gene026367.t1 MTR_4g036030 33.333 159 83 7 4 148 7 156 4.48e-16 76.6
MS.gene026367.t1 MTR_4g089135 35.294 136 75 4 4 133 15 143 2.00e-15 75.1
MS.gene026367.t1 MTR_7g100990 29.798 198 118 7 4 193 11 195 2.13e-15 74.7
MS.gene026367.t1 MTR_8g094580 32.716 162 82 8 4 148 7 158 2.26e-15 74.3
MS.gene026367.t1 MTR_7g085220 29.651 172 88 7 4 150 8 171 2.50e-15 74.7
MS.gene026367.t1 MTR_2g064090 30.818 159 89 7 4 148 6 157 3.01e-15 74.3
MS.gene026367.t1 MTR_5g069030 31.325 166 84 8 1 148 22 175 4.22e-15 74.7
MS.gene026367.t1 MTR_8g023900 31.481 162 86 7 2 148 10 161 7.48e-15 73.9
MS.gene026367.t1 MTR_8g023900 27.363 201 112 9 4 184 188 374 1.44e-12 67.0
MS.gene026367.t1 MTR_8g467490 28.994 169 91 7 2 148 12 173 8.76e-15 73.6
MS.gene026367.t1 MTR_3g109340 31.447 159 90 6 2 148 20 171 1.13e-14 72.8
MS.gene026367.t1 MTR_4g134460 32.911 158 87 6 2 148 52 201 1.22e-14 73.2
MS.gene026367.t1 MTR_8g023930 29.064 203 121 10 2 193 22 212 1.79e-14 72.8
MS.gene026367.t1 MTR_4g094302 33.333 129 77 5 4 132 11 130 2.64e-14 68.9
MS.gene026367.t1 MTR_5g040420 30.769 169 87 7 2 148 12 172 2.87e-14 72.0
MS.gene026367.t1 MTR_8g023860 29.747 158 90 6 1 146 9 157 3.05e-14 72.0
MS.gene026367.t1 MTR_8g099750 30.909 165 87 5 4 150 14 169 4.91e-14 69.7
MS.gene026367.t1 MTR_4g075980 31.579 152 88 6 6 148 17 161 7.23e-14 70.1
MS.gene026367.t1 MTR_2g068880 30.460 174 87 6 2 148 20 186 8.99e-14 70.1
MS.gene026367.t1 MTR_6g084430 32.051 156 86 6 4 148 5 151 1.53e-13 69.3
MS.gene026367.t1 MTR_3g435150 32.919 161 84 9 3 148 15 166 1.60e-13 69.3
MS.gene026367.t1 MTR_8g093790 29.310 174 101 7 4 174 10 164 2.12e-13 67.0
MS.gene026367.t1 MTR_4g098630 27.228 202 118 9 4 188 6 195 4.57e-13 67.8
MS.gene026367.t1 MTR_3g116070 29.730 148 90 5 4 144 23 163 5.33e-13 68.2
MS.gene026367.t1 MTR_3g096140 30.435 161 88 6 3 148 6 157 5.41e-13 67.4
MS.gene026367.t1 MTR_3g109340 29.747 158 93 6 2 148 20 170 5.79e-13 67.8
MS.gene026367.t1 MTR_8g023840 28.796 191 113 9 4 182 11 190 5.99e-13 68.2
MS.gene026367.t1 MTR_2g068920 32.877 146 82 5 2 138 19 157 1.06e-12 66.6
MS.gene026367.t1 MTR_3g096140 30.435 161 88 6 3 148 6 157 1.43e-12 66.6
MS.gene026367.t1 MTR_1g090720 32.317 164 85 6 4 148 42 198 7.58e-12 65.1
MS.gene026367.t1 MTR_6g012670 30.000 160 88 8 4 148 20 170 8.23e-12 64.3
MS.gene026367.t1 MTR_3g070030 29.193 161 89 7 4 148 19 170 8.89e-12 64.3
MS.gene026367.t1 MTR_1g090723 27.742 155 94 6 6 148 10 158 2.32e-11 63.5
MS.gene026367.t1 MTR_1g090723 27.742 155 94 6 6 148 10 158 2.54e-11 63.5
MS.gene026367.t1 MTR_1g090723 27.564 156 94 6 6 148 10 159 5.15e-11 62.8
MS.gene026367.t1 MTR_3g096400 27.419 186 110 6 4 172 7 184 7.19e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026367.t1 AT5G62380 35.443 158 81 6 4 148 7 156 9.11e-19 84.3
MS.gene026367.t1 AT5G62380 35.443 158 81 6 4 148 7 156 9.11e-19 84.3
MS.gene026367.t1 AT3G17730 33.333 159 84 8 4 148 6 156 3.00e-18 81.6
MS.gene026367.t1 AT4G36160 33.333 156 87 5 4 148 10 159 6.17e-18 82.4
MS.gene026367.t1 AT4G36160 33.333 156 87 5 4 148 10 159 6.17e-18 82.4
MS.gene026367.t1 AT4G36160 33.333 156 87 5 4 148 14 163 6.39e-18 82.4
MS.gene026367.t1 AT1G12260 35.849 159 79 8 4 148 7 156 7.69e-18 81.6
MS.gene026367.t1 AT4G27410 33.333 162 84 7 4 151 14 165 1.37e-17 80.5
MS.gene026367.t1 AT1G12260 35.849 159 79 8 4 148 7 156 1.51e-17 81.3
MS.gene026367.t1 AT1G71930 32.484 157 89 5 4 149 9 159 1.65e-17 80.5
MS.gene026367.t1 AT1G71930 32.484 157 89 5 4 149 9 159 1.65e-17 80.5
MS.gene026367.t1 AT2G24430 34.591 159 85 6 2 148 14 165 3.09e-17 79.7
MS.gene026367.t1 AT2G24430 34.591 159 85 6 2 148 14 165 3.09e-17 79.7
MS.gene026367.t1 AT2G18060 32.692 156 88 5 4 148 9 158 3.68e-17 80.1
MS.gene026367.t1 AT2G18060 32.692 156 88 5 4 148 9 158 3.68e-17 80.1
MS.gene026367.t1 AT1G76420 32.919 161 81 7 4 148 22 171 7.42e-17 79.0
MS.gene026367.t1 AT4G17980 31.288 163 86 6 4 148 6 160 8.33e-17 77.8
MS.gene026367.t1 AT1G69490 31.481 162 85 6 4 148 9 161 1.01e-16 77.8
MS.gene026367.t1 AT1G62700 33.962 159 82 7 4 148 7 156 1.31e-16 78.6
MS.gene026367.t1 AT1G62700 33.962 159 82 7 4 148 7 156 1.31e-16 78.6
MS.gene026367.t1 AT2G27300 29.944 177 101 6 4 173 14 174 1.52e-16 78.2
MS.gene026367.t1 AT4G17980 31.288 163 86 6 4 148 6 160 1.68e-16 77.4
MS.gene026367.t1 AT2G02450 32.749 171 96 6 3 162 50 212 1.72e-16 78.2
MS.gene026367.t1 AT2G02450 32.749 171 96 6 3 162 50 212 2.23e-16 78.2
MS.gene026367.t1 AT3G44290 29.932 147 87 6 6 145 16 153 2.30e-16 75.9
MS.gene026367.t1 AT3G10490 34.161 161 81 7 4 148 27 178 5.46e-16 75.1
MS.gene026367.t1 AT1G32510 31.737 167 86 7 3 148 5 164 6.01e-16 75.9
MS.gene026367.t1 AT5G39610 32.500 160 84 7 4 148 20 170 7.07e-16 75.5
MS.gene026367.t1 AT3G44290 29.932 147 87 6 6 145 16 153 7.94e-16 75.9
MS.gene026367.t1 AT1G26870 28.804 184 98 7 2 163 14 186 1.51e-15 75.9
MS.gene026367.t1 AT4G28530 31.214 173 93 5 4 154 10 178 1.76e-15 75.1
MS.gene026367.t1 AT3G49530 29.091 165 90 8 1 148 10 164 2.09e-15 75.5
MS.gene026367.t1 AT3G10490 34.161 161 81 7 4 148 27 178 2.12e-15 75.5
MS.gene026367.t1 AT3G49530 29.091 165 90 8 1 148 10 164 2.43e-15 75.5
MS.gene026367.t1 AT3G10480 34.161 161 81 7 4 148 27 178 4.04e-15 74.7
MS.gene026367.t1 AT1G61110 36.957 138 71 6 4 134 16 144 4.16e-15 73.9
MS.gene026367.t1 AT1G54330 30.968 155 90 6 4 148 6 153 5.22e-15 73.6
MS.gene026367.t1 AT1G01720 31.481 162 84 6 4 148 7 158 7.93e-15 72.8
MS.gene026367.t1 AT3G10480 33.750 160 82 7 4 148 27 177 1.31e-14 73.2
MS.gene026367.t1 AT3G15510 31.013 158 88 5 10 161 23 165 1.79e-14 72.4
MS.gene026367.t1 AT5G24590 30.247 162 86 7 4 148 13 164 1.99e-14 72.4
MS.gene026367.t1 AT2G43000 31.646 158 83 8 6 148 20 167 2.33e-14 71.2
MS.gene026367.t1 AT3G29035 34.074 135 74 5 4 132 24 149 2.43e-14 71.6
MS.gene026367.t1 AT5G39820 34.307 137 77 5 2 132 18 147 4.06e-14 71.2
MS.gene026367.t1 AT5G04395 33.113 151 76 6 4 135 28 172 4.24e-14 68.9
MS.gene026367.t1 AT4G10350 32.704 159 82 8 4 146 9 158 6.92e-14 70.5
MS.gene026367.t1 AT3G18400 32.484 157 85 9 4 148 5 152 7.28e-14 70.1
MS.gene026367.t1 AT5G07680 32.317 164 85 8 4 151 17 170 1.45e-13 69.7
MS.gene026367.t1 AT5G07680 32.317 164 85 8 4 151 3 156 1.56e-13 69.3
MS.gene026367.t1 AT1G77450 31.056 161 85 6 4 148 10 160 1.82e-13 68.6
MS.gene026367.t1 AT5G46590 33.094 139 79 6 4 135 6 137 2.03e-13 68.6
MS.gene026367.t1 AT5G04410 30.380 158 90 6 4 148 9 159 2.47e-13 69.3
MS.gene026367.t1 AT5G64530 28.866 194 104 7 4 176 3 183 4.62e-13 66.2
MS.gene026367.t1 AT3G10500 31.646 158 88 6 4 148 9 159 6.70e-13 68.2
MS.gene026367.t1 AT5G18270 32.298 161 84 8 4 148 21 172 1.44e-12 66.6
MS.gene026367.t1 AT5G18270 32.298 161 84 8 4 148 21 172 1.53e-12 66.6
MS.gene026367.t1 AT3G04070 27.976 168 91 7 4 148 10 170 2.62e-12 65.9
MS.gene026367.t1 AT2G17040 29.299 157 93 7 2 148 4 152 2.72e-12 65.5
MS.gene026367.t1 AT3G04070 30.714 140 81 5 4 134 10 142 5.78e-12 65.1
MS.gene026367.t1 AT5G64530 34.109 129 72 5 4 132 3 118 6.85e-12 62.4
MS.gene026367.t1 AT3G10480 29.319 191 83 7 4 148 27 211 7.33e-12 65.1
MS.gene026367.t1 AT5G50820 33.824 136 75 6 4 135 17 141 9.01e-12 62.8
MS.gene026367.t1 AT5G64060 28.571 224 120 10 4 207 6 209 1.05e-11 64.3
MS.gene026367.t1 AT2G46770 26.794 209 114 8 4 182 16 215 1.60e-11 63.9

Find 60 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAGTTATGCTGCATTTC+TGG 0.105946 1.1:+19435504 MS.gene026367:intron
GCAACTTAAGCTTGCAATTA+TGG 0.191040 1.1:+19435564 MS.gene026367:CDS
TGGATCTAGACTCTGAATTT+AGG 0.202686 1.1:+19434455 MS.gene026367:CDS
CCATGGTTCTGACCTGATTA+AGG 0.246999 1.1:+19433993 MS.gene026367:CDS
GAAGGAACTCAGCAACTTAA+AGG 0.294305 1.1:+19434538 MS.gene026367:CDS
CCTCCTCGGCTTATCAGTTT+TGG 0.294469 1.1:-19434106 None:intergenic
CCTTGTGTGACAGAAGAAAA+AGG 0.338176 1.1:-19434064 None:intergenic
GGCATTGTAAGTCTGGATTC+TGG 0.379162 1.1:+19434127 MS.gene026367:CDS
GGATCTAGACTCTGAATTTA+GGG 0.380988 1.1:+19434456 MS.gene026367:CDS
CCGAGGAGGCATTGTAAGTC+TGG 0.404169 1.1:+19434120 MS.gene026367:CDS
TCTAGTGATGGTGCTGGTGC+TGG 0.412235 1.1:+19434574 MS.gene026367:CDS
GCAATTCAAATGGATCATAT+TGG 0.417827 1.1:-19434029 None:intergenic
GGCTACTCAAGCCACTCTTC+AGG 0.439395 1.1:+19434627 MS.gene026367:CDS
AAAACACGGCAAACAACAAA+AGG 0.449123 1.1:-19434415 None:intergenic
ACAGGTTCAACTCCTTAATC+AGG 0.453714 1.1:-19434005 None:intergenic
CTCAGCAACTTAAAGGAGCT+GGG 0.464776 1.1:+19434545 MS.gene026367:CDS
AGGTGATGCATCCCGTTTCA+TGG 0.466939 1.1:+19434606 MS.gene026367:CDS
ACTCAGCAACTTAAAGGAGC+TGG 0.470641 1.1:+19434544 MS.gene026367:CDS
CAAATGGATCATATTGGTAC+AGG 0.471215 1.1:-19434023 None:intergenic
TGAGCAAGATGCAATTCAAA+TGG 0.471704 1.1:-19434039 None:intergenic
GATTTGCTTCCACCTGGTGA+TGG 0.476455 1.1:+19433898 MS.gene026367:CDS
GCTGGTGCTGGTGCTGAGCA+AGG 0.476489 1.1:+19434586 MS.gene026367:CDS
TGGCTTGAGTAGCCATGAAA+CGG 0.501686 1.1:-19434618 None:intergenic
GAGTCTAGATCCATCCCTCT+AGG 0.503882 1.1:-19434445 None:intergenic
GGCTTGAGTAGCCATGAAAC+GGG 0.506923 1.1:-19434617 None:intergenic
GAAGATGTTCAGAATTTCCA+TGG 0.508550 1.1:+19433976 MS.gene026367:CDS
TGCTGGAGCTGATGAAGTGT+TGG 0.511388 1.1:+19434179 MS.gene026367:CDS
GCTATCAGAGACATTACTGC+TGG 0.524416 1.1:+19434162 MS.gene026367:CDS
TCTAATGACAAGGCGAATGA+AGG 0.530095 1.1:+19434520 MS.gene026367:CDS
ACCTTCATCTACATTAGATA+AGG 0.537868 1.1:-19434479 None:intergenic
AGAACGCGATCAAAACTAGC+TGG 0.546737 1.1:+19434247 MS.gene026367:CDS
CACTCTTGTTAACAACCCTC+AGG 0.546751 1.1:+19434284 MS.gene026367:CDS
TGGAGCTGATGAAGTGTTGG+TGG 0.547793 1.1:+19434182 MS.gene026367:CDS
GCCTTATCTAATGTAGATGA+AGG 0.548985 1.1:+19434478 MS.gene026367:CDS
GCTAGTTCTAGTGATGGTGC+TGG 0.549559 1.1:+19434568 MS.gene026367:CDS
CCAGACTTACAATGCCTCCT+CGG 0.554562 1.1:-19434120 None:intergenic
GCAATGGATTTGCTTCCACC+TGG 0.557540 1.1:+19433892 None:intergenic
ATTGCAAGCTTAAGTTGCAC+TGG 0.559323 1.1:-19435559 None:intergenic
AGTCTAGATCCATCCCTCTA+GGG 0.568853 1.1:-19434444 None:intergenic
GAAGGGACGAAGCCATCACC+AGG 0.572440 1.1:-19433910 None:intergenic
GTCTGGATTCTGGATGCAGA+AGG 0.580380 1.1:+19434137 MS.gene026367:CDS
TGGCAAGGTAATAGCTAACA+AGG 0.592858 1.1:-19433942 None:intergenic
GCTGGGGCTAGTTCTAGTGA+TGG 0.604683 1.1:+19434562 MS.gene026367:CDS
TCTGGATTCTGGATGCAGAA+GGG 0.607744 1.1:+19434138 MS.gene026367:CDS
CCTTAATCAGGTCAGAACCA+TGG 0.610457 1.1:-19433993 None:intergenic
GGACTGTGTTGTGTCCCACA+TGG 0.610711 1.1:+19435525 MS.gene026367:CDS
ACTTAAGCTTGCAATTATGG+AGG 0.611921 1.1:+19435567 MS.gene026367:CDS
CTGGCGTCATAGCTTCCATG+TGG 0.624065 1.1:-19435540 None:intergenic
GTAGATGAAGGTGATGCTGC+TGG 0.627007 1.1:+19434490 MS.gene026367:CDS
TAACAAGGAGTTCATCAGAA+GGG 0.633655 1.1:-19433927 None:intergenic
AACATATGTTACCTGAAGAG+TGG 0.646900 1.1:-19434638 None:intergenic
TCAGCAACTTAAAGGAGCTG+GGG 0.650588 1.1:+19434546 MS.gene026367:CDS
CTGCCAAAACTGATAAGCCG+AGG 0.662718 1.1:+19434103 MS.gene026367:CDS
CTAACAAGGAGTTCATCAGA+AGG 0.667376 1.1:-19433928 None:intergenic
TGGTGACGACTCTAATGACA+AGG 0.670407 1.1:+19434510 MS.gene026367:CDS
TGGCGTCATAGCTTCCATGT+GGG 0.673799 1.1:-19435539 None:intergenic
GGAGCTGATGAAGTGTTGGT+GGG 0.677615 1.1:+19434183 MS.gene026367:CDS
CTAGATCCATCCCTCTAGGG+CGG 0.699070 1.1:-19434441 None:intergenic
CCAAAACTGATAAGCCGAGG+AGG 0.700616 1.1:+19434106 MS.gene026367:CDS
GGGACGAAGCCATCACCAGG+TGG 0.720807 1.1:-19433907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTAAAGAAAAATAAA+AGG - chr1.1:19435338-19435357 None:intergenic 10.0%
!! TATCAAAAATTGTTTAATTA+TGG + chr1.1:19435076-19435095 MS.gene026367:intron 10.0%
!!! ATTTTTCTTTAAGTTTTTTG+TGG + chr1.1:19435341-19435360 MS.gene026367:intron 15.0%
!! AATTCAAAACCTTTATGTAT+TGG + chr1.1:19434955-19434974 MS.gene026367:intron 20.0%
!! ATATGTATTTCACTTTCTAT+TGG + chr1.1:19434768-19434787 MS.gene026367:intron 20.0%
!! TCGATGATTAATTAATGTAT+TGG + chr1.1:19434351-19434370 MS.gene026367:intron 20.0%
!! TGTATGTAGAATTATGTAAT+TGG - chr1.1:19435050-19435069 None:intergenic 20.0%
!! TTAATTATGGAAGTCAATAT+TGG + chr1.1:19435089-19435108 MS.gene026367:intron 20.0%
!!! CATCTTTTCATGTAATTTTA+TGG + chr1.1:19435421-19435440 MS.gene026367:intron 20.0%
!!! TACATAAAGGTTTTGAATTA+TGG - chr1.1:19434954-19434973 None:intergenic 20.0%
!!! TTTTATATAAATAACTGTGC+AGG + chr1.1:19434390-19434409 MS.gene026367:intron 20.0%
! AACTATATTCATTCATGTGA+TGG + chr1.1:19435159-19435178 MS.gene026367:intron 25.0%
! CATGAAAATCATTGATATTG+TGG - chr1.1:19434918-19434899 None:intergenic 25.0%
! GATGACAAAATAAATATCGA+GGG - chr1.1:19434674-19434693 None:intergenic 25.0%
!! AAATAAAAGGACATGTTTTG+AGG - chr1.1:19435325-19435344 None:intergenic 25.0%
!! CTTTTCATGTAATTTTATGG+TGG + chr1.1:19435424-19435443 MS.gene026367:intron 25.0%
!! TCTCTCTTCTTTTTCTATAT+AGG + chr1.1:19434213-19434232 MS.gene026367:CDS 25.0%
!!! AACATCTTCATTGTTTTTGT+TGG - chr1.1:19433965-19433984 None:intergenic 25.0%
!!! CTAATTTGTTACATGTTTTG+AGG - chr1.1:19435274-19435293 None:intergenic 25.0%
!!! CTCGATATTTATTTTGTCAT+CGG + chr1.1:19434673-19434692 MS.gene026367:intron 25.0%
AAAATACCTCCATCATATGT+GGG + chr1.1:19434805-19434824 MS.gene026367:intron 30.0%
ACCTTCATCTACATTAGATA+AGG - chr1.1:19434482-19434501 None:intergenic 30.0%
CAAAATCCACCAATACATAA+AGG - chr1.1:19434967-19434986 None:intergenic 30.0%
CATAAATAATCCAAACGCAA+TGG - chr1.1:19435016-19435035 None:intergenic 30.0%
CGATGACAAAATAAATATCG+AGG - chr1.1:19434675-19434694 None:intergenic 30.0%
GCAATTCAAATGGATCATAT+TGG - chr1.1:19434032-19434051 None:intergenic 30.0%
TAAAATACCTCCATCATATG+TGG + chr1.1:19434804-19434823 MS.gene026367:intron 30.0%
TCAAAACCTTTATGTATTGG+TGG + chr1.1:19434958-19434977 MS.gene026367:intron 30.0%
TGTAAAATTCAGTTGCAAAG+AGG - chr1.1:19435140-19435159 None:intergenic 30.0%
TGTGACCATGATTTAAAAGT+TGG - chr1.1:19434863-19434882 None:intergenic 30.0%
! TACGACCAACTTTTAAATCA+TGG + chr1.1:19434855-19434874 MS.gene026367:intron 30.0%
!!! TTATGTATTGGTGGATTTTG+TGG + chr1.1:19434967-19434986 MS.gene026367:intron 30.0%
AAAACACGGCAAACAACAAA+AGG - chr1.1:19434418-19434437 None:intergenic 35.0%
AACATATGTTACCTGAAGAG+TGG - chr1.1:19434641-19434660 None:intergenic 35.0%
ACTTAAGCTTGCAATTATGG+AGG + chr1.1:19435567-19435586 MS.gene026367:CDS 35.0%
AGAGGATCAACAACATTAAC+TGG - chr1.1:19435122-19435141 None:intergenic 35.0%
ATCGATTGAATAACGAGCAT+AGG - chr1.1:19434336-19434355 None:intergenic 35.0%
CAAATGGATCATATTGGTAC+AGG - chr1.1:19434026-19434045 None:intergenic 35.0%
GAAGATGTTCAGAATTTCCA+TGG + chr1.1:19433976-19433995 MS.gene026367:CDS 35.0%
GCAACTTAAGCTTGCAATTA+TGG + chr1.1:19435564-19435583 MS.gene026367:CDS 35.0%
GCCTTATCTAATGTAGATGA+AGG + chr1.1:19434478-19434497 MS.gene026367:CDS 35.0%
GGATCTAGACTCTGAATTTA+GGG + chr1.1:19434456-19434475 MS.gene026367:CDS 35.0%
TAACAAGGAGTTCATCAGAA+GGG - chr1.1:19433930-19433949 None:intergenic 35.0%
TCGATTGAATAACGAGCATA+GGG - chr1.1:19434335-19434354 None:intergenic 35.0%
TGAGCAAGATGCAATTCAAA+TGG - chr1.1:19434042-19434061 None:intergenic 35.0%
TGGATCTAGACTCTGAATTT+AGG + chr1.1:19434455-19434474 MS.gene026367:CDS 35.0%
TTCTCAAATGACATACCTGA+GGG - chr1.1:19434302-19434321 None:intergenic 35.0%
TTTCTCAAATGACATACCTG+AGG - chr1.1:19434303-19434322 None:intergenic 35.0%
! CTTTTTCTTCTGTCACACAA+GGG + chr1.1:19434065-19434084 MS.gene026367:CDS 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG - chr1.1:19433960-19433979 None:intergenic 35.0%
AATCATGGTCACACTAACTG+TGG + chr1.1:19434870-19434889 MS.gene026367:intron 40.0%
ACAGGTTCAACTCCTTAATC+AGG - chr1.1:19434008-19434027 None:intergenic 40.0%
ATATTGTGGCCCACATATGA+TGG - chr1.1:19434817-19434836 None:intergenic 40.0%
CCTTGTGTGACAGAAGAAAA+AGG - chr1.1:19434067-19434086 None:intergenic 40.0%
CTAACAAGGAGTTCATCAGA+AGG - chr1.1:19433931-19433950 None:intergenic 40.0%
GAAGGAACTCAGCAACTTAA+AGG + chr1.1:19434538-19434557 MS.gene026367:CDS 40.0%
GATGAGTTATGCTGCATTTC+TGG + chr1.1:19435504-19435523 MS.gene026367:intron 40.0%
TCTAATGACAAGGCGAATGA+AGG + chr1.1:19434520-19434539 MS.gene026367:CDS 40.0%
TGGCAAGGTAATAGCTAACA+AGG - chr1.1:19433945-19433964 None:intergenic 40.0%
! ATTGCAAGCTTAAGTTGCAC+TGG - chr1.1:19435562-19435581 None:intergenic 40.0%
! CCTTTTTCTTCTGTCACACA+AGG + chr1.1:19434064-19434083 MS.gene026367:CDS 40.0%
!!! AGGACATGTTTTGAGGAATC+TGG - chr1.1:19435318-19435337 None:intergenic 40.0%
!!! TAGTTTTGATCGCGTTCTGA+GGG - chr1.1:19434245-19434264 None:intergenic 40.0%
ACTCAGCAACTTAAAGGAGC+TGG + chr1.1:19434544-19434563 MS.gene026367:CDS 45.0%
AGAACGCGATCAAAACTAGC+TGG + chr1.1:19434247-19434266 MS.gene026367:CDS 45.0%
AGTCTAGATCCATCCCTCTA+GGG - chr1.1:19434447-19434466 None:intergenic 45.0%
CACTCTTGTTAACAACCCTC+AGG + chr1.1:19434284-19434303 MS.gene026367:CDS 45.0%
CCAAACGCAATGGAGCTATT+TGG - chr1.1:19435006-19435025 None:intergenic 45.0%
CCAAATAGCTCCATTGCGTT+TGG + chr1.1:19435003-19435022 MS.gene026367:intron 45.0%
CCTTAATCAGGTCAGAACCA+TGG - chr1.1:19433996-19434015 None:intergenic 45.0%
CTCAGCAACTTAAAGGAGCT+GGG + chr1.1:19434545-19434564 MS.gene026367:CDS 45.0%
GCTATCAGAGACATTACTGC+TGG + chr1.1:19434162-19434181 MS.gene026367:CDS 45.0%
GGCATTGTAAGTCTGGATTC+TGG + chr1.1:19434127-19434146 MS.gene026367:CDS 45.0%
TCAGCAACTTAAAGGAGCTG+GGG + chr1.1:19434546-19434565 MS.gene026367:CDS 45.0%
TCTGGATTCTGGATGCAGAA+GGG + chr1.1:19434138-19434157 MS.gene026367:CDS 45.0%
TGGCTTGAGTAGCCATGAAA+CGG - chr1.1:19434621-19434640 None:intergenic 45.0%
! TGGTGACGACTCTAATGACA+AGG + chr1.1:19434510-19434529 MS.gene026367:CDS 45.0%
!! AGTTTTGATCGCGTTCTGAG+GGG - chr1.1:19434244-19434263 None:intergenic 45.0%
!! CCATGGTTCTGACCTGATTA+AGG + chr1.1:19433993-19434012 MS.gene026367:CDS 45.0%
!!! CTAGTTTTGATCGCGTTCTG+AGG - chr1.1:19434246-19434265 None:intergenic 45.0%
AGGTGATGCATCCCGTTTCA+TGG + chr1.1:19434606-19434625 MS.gene026367:CDS 50.0%
CCAAAACTGATAAGCCGAGG+AGG + chr1.1:19434106-19434125 MS.gene026367:CDS 50.0%
CCAGACTTACAATGCCTCCT+CGG - chr1.1:19434123-19434142 None:intergenic 50.0%
CTGCCAAAACTGATAAGCCG+AGG + chr1.1:19434103-19434122 MS.gene026367:CDS 50.0%
GAGTCTAGATCCATCCCTCT+AGG - chr1.1:19434448-19434467 None:intergenic 50.0%
GGCTTGAGTAGCCATGAAAC+GGG - chr1.1:19434620-19434639 None:intergenic 50.0%
GTAGATGAAGGTGATGCTGC+TGG + chr1.1:19434490-19434509 MS.gene026367:CDS 50.0%
GTCTGGATTCTGGATGCAGA+AGG + chr1.1:19434137-19434156 MS.gene026367:CDS 50.0%
TGCTGGAGCTGATGAAGTGT+TGG + chr1.1:19434179-19434198 MS.gene026367:CDS 50.0%
TGGCGTCATAGCTTCCATGT+GGG - chr1.1:19435542-19435561 None:intergenic 50.0%
TTGTGGCCCACATATGATGG+AGG - chr1.1:19434814-19434833 None:intergenic 50.0%
! CCTCCTCGGCTTATCAGTTT+TGG - chr1.1:19434109-19434128 None:intergenic 50.0%
! GATTTGCTTCCACCTGGTGA+TGG + chr1.1:19433898-19433917 MS.gene026367:CDS 50.0%
!! CTCTAGGGCGGTCAAAAACA+CGG - chr1.1:19434432-19434451 None:intergenic 50.0%
!! GCTAGTTCTAGTGATGGTGC+TGG + chr1.1:19434568-19434587 MS.gene026367:CDS 50.0%
!! GGAGCTGATGAAGTGTTGGT+GGG + chr1.1:19434183-19434202 MS.gene026367:CDS 50.0%
!! GTGTTTTTGACCGCCCTAGA+GGG + chr1.1:19434431-19434450 MS.gene026367:CDS 50.0%
!! TGGAGCTGATGAAGTGTTGG+TGG + chr1.1:19434182-19434201 MS.gene026367:CDS 50.0%
CTGGCGTCATAGCTTCCATG+TGG - chr1.1:19435543-19435562 None:intergenic 55.0%
GGACTGTGTTGTGTCCCACA+TGG + chr1.1:19435525-19435544 MS.gene026367:CDS 55.0%
GGCTACTCAAGCCACTCTTC+AGG + chr1.1:19434627-19434646 MS.gene026367:CDS 55.0%
! CTAGATCCATCCCTCTAGGG+CGG - chr1.1:19434444-19434463 None:intergenic 55.0%
! TTTTGACCGCCCTAGAGGGA+TGG + chr1.1:19434435-19434454 MS.gene026367:CDS 55.0%
!! CCGAGGAGGCATTGTAAGTC+TGG + chr1.1:19434120-19434139 MS.gene026367:CDS 55.0%
!! CGTGTTTTTGACCGCCCTAG+AGG + chr1.1:19434430-19434449 MS.gene026367:CDS 55.0%
!! GCTGGGGCTAGTTCTAGTGA+TGG + chr1.1:19434562-19434581 MS.gene026367:CDS 55.0%
!! TCTAGTGATGGTGCTGGTGC+TGG + chr1.1:19434574-19434593 MS.gene026367:CDS 55.0%
GAAGGGACGAAGCCATCACC+AGG - chr1.1:19433913-19433932 None:intergenic 60.0%
GGGACGAAGCCATCACCAGG+TGG - chr1.1:19433910-19433929 None:intergenic 65.0%
!! GCTGGTGCTGGTGCTGAGCA+AGG + chr1.1:19434586-19434605 MS.gene026367:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 19433895 19435603 19433895 ID=MS.gene026367
chr1.1 mRNA 19433895 19435603 19433895 ID=MS.gene026367.t1;Parent=MS.gene026367
chr1.1 exon 19433895 19434305 19433895 ID=MS.gene026367.t1.exon1;Parent=MS.gene026367.t1
chr1.1 CDS 19433895 19434305 19433895 ID=cds.MS.gene026367.t1;Parent=MS.gene026367.t1
chr1.1 exon 19434412 19434648 19434412 ID=MS.gene026367.t1.exon2;Parent=MS.gene026367.t1
chr1.1 CDS 19434412 19434648 19434412 ID=cds.MS.gene026367.t1;Parent=MS.gene026367.t1
chr1.1 exon 19435505 19435603 19435505 ID=MS.gene026367.t1.exon3;Parent=MS.gene026367.t1
chr1.1 CDS 19435505 19435603 19435505 ID=cds.MS.gene026367.t1;Parent=MS.gene026367.t1
Gene Sequence

>MS.gene026367

ATGGATTTGCTTCCACCTGGTGATGGCTTCGTCCCTTCTGATGAACTCCTTGTTAGCTATTACCTTGCCAACAAAAACAATGAAGATGTTCAGAATTTCCATGGTTCTGACCTGATTAAGGAGTTGAACCTGTACCAATATGATCCATTTGAATTGCATCTTGCTCAATCCTTTTTCTTCTGTCACACAAGGGAGTTTTACTGCTTCACTGCCAAAACTGATAAGCCGAGGAGGCATTGTAAGTCTGGATTCTGGATGCAGAAGGGAGCTATCAGAGACATTACTGCTGGAGCTGATGAAGTGTTGGTGGGAAAGAAGTCTCTCTTCTTTTTCTATATAGGAAATTCCCCTCAGAACGCGATCAAAACTAGCTGGACTATGTACGAGTACACTCTTGTTAACAACCCTCAGGTATGTCATTTGAGAAAACTAACTTTCCCTATGCTCGTTATTCAATCGATGATTAATTAATGTATTGGTAATGACTAACTATTTTTTTATATAAATAACTGTGCAGGCTCCTTTTGTTGTTTGCCGTGTTTTTGACCGCCCTAGAGGGATGGATCTAGACTCTGAATTTAGGGCCTTATCTAATGTAGATGAAGGTGATGCTGCTGGTGACGACTCTAATGACAAGGCGAATGAAGGAACTCAGCAACTTAAAGGAGCTGGGGCTAGTTCTAGTGATGGTGCTGGTGCTGGTGCTGAGCAAGGTGATGCATCCCGTTTCATGGCTACTCAAGCCACTCTTCAGGTAACATATGTTTCATTTTGATCCCTCGATATTTATTTTGTCATCGGCAACAATTTTGCAATGCTTAAATTTGTCTAAAATCAAAATTCAAAATTGTTTTTTGTCTGTTTTTGTGTATTATATGTATTTCACTTTCTATTGGACATAAGTTTTAATAAAATACCTCCATCATATGTGGGCCACAATATCAATGATTTTCATGTATGTACGACCAACTTTTAAATCATGGTCACACTAACTGTGGCTATTGCATGAAAATCATTGATATTGCAAATAATAATGATCAAAAGTGATTGATGCATCCATAATTCAAAACCTTTATGTATTGGTGGATTTTGTGGTTGATGTTTGAATCCAAATAGCTCCATTGCGTTTGGATTATTTATGTTTTGCAGTTGCCAATTACATAATTCTACATACACAATTGTATCAAAAATTGTTTAATTATGGAAGTCAATATTGGCAGTTAACCAGTTAATGTTGTTGATCCTCTTTGCAACTGAATTTTACAACTATATTCATTCATGTGATGGTATTTTTTTTTTTATTTTGATCAATTTTATTGAATGTATCACTCTACACAAGTTTTTTTCTTTTTTGTGTGTAGAAACTAAGTGATGATCCTCAAAACATGTAACAAATTAGTAGTTAACATAGCTATTCTAACCAGATTCCTCAAAACATGTCCTTTTATTTTTCTTTAAGTTTTTTGTGGTATTAAATTCATTATTATTATTATTATTATTAATATCATCATCACTTTTTGACAAAGCATCTTTTCATGTAATTTTATGGTGGAGAGAAGAAAGTGTTGCTGAAATATTGAATTTCTTTGTTTGATATTGATGTTTATCAGATGAGTTATGCTGCATTTCTGGACTGTGTTGTGTCCCACATGGAAGCTATGACGCCAGTGCAACTTAAGCTTGCAATTATGGAGGAAGATTTTATTTAA
Protein sequence

>MS.gene026367.t1

MDLLPPGDGFVPSDELLVSYYLANKNNEDVQNFHGSDLIKELNLYQYDPFELHLAQSFFFCHTREFYCFTAKTDKPRRHCKSGFWMQKGAIRDITAGADEVLVGKKSLFFFYIGNSPQNAIKTSWTMYEYTLVNNPQAPFVVCRVFDRPRGMDLDSEFRALSNVDEGDAAGDDSNDKANEGTQQLKGAGASSSDGAGAGAEQGDASRFMATQATLQMSYAAFLDCVVSHMEAMTPVQLKLAIMEEDFI