AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026369

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026369.t1 MTR_1g047060 49.485 97 42 2 112 208 3 92 8.26e-22 85.9
MS.gene026369.t1 MTR_6g477900 32.768 177 88 8 4 166 6 165 1.51e-19 84.0
MS.gene026369.t1 MTR_4g094302 31.183 186 105 7 4 176 11 186 2.27e-18 79.7
MS.gene026369.t1 MTR_4g101680 34.591 159 81 7 4 148 7 156 5.75e-18 81.3
MS.gene026369.t1 MTR_1g008740 33.333 162 90 6 2 151 25 180 3.39e-17 79.3
MS.gene026369.t1 MTR_1g008740 33.333 162 90 6 2 151 11 166 4.81e-17 78.6
MS.gene026369.t1 MTR_5g012080 33.333 171 84 10 4 153 7 168 5.24e-17 78.6
MS.gene026369.t1 MTR_2g093810 32.738 168 87 7 4 154 14 172 1.30e-16 77.0
MS.gene026369.t1 MTR_5g021710 32.484 157 89 6 4 149 8 158 1.35e-16 77.4
MS.gene026369.t1 MTR_4g036030 32.692 156 88 6 4 148 7 156 1.76e-16 77.0
MS.gene026369.t1 MTR_8g094580 32.515 163 81 8 4 148 7 158 3.83e-16 75.5
MS.gene026369.t1 MTR_5g041940 29.630 162 88 6 4 148 3 155 5.16e-16 74.7
MS.gene026369.t1 MTR_8g023900 29.375 160 92 6 2 148 10 161 1.09e-15 75.5
MS.gene026369.t1 MTR_8g023900 27.136 199 115 9 4 184 188 374 3.64e-12 65.1
MS.gene026369.t1 MTR_2g080010 30.818 159 96 5 4 155 15 166 1.26e-15 74.7
MS.gene026369.t1 MTR_7g100990 28.571 210 111 8 4 196 11 198 3.37e-15 73.2
MS.gene026369.t1 MTR_3g109340 30.818 159 91 6 2 148 20 171 1.23e-14 72.0
MS.gene026369.t1 MTR_8g059170 30.247 162 87 7 4 149 14 165 1.25e-14 71.6
MS.gene026369.t1 MTR_4g089135 33.088 136 78 4 4 133 15 143 1.37e-14 71.6
MS.gene026369.t1 MTR_4g094302 32.558 129 78 5 4 132 11 130 1.81e-14 68.6
MS.gene026369.t1 MTR_8g023930 28.387 155 98 5 2 148 22 171 2.74e-14 71.2
MS.gene026369.t1 MTR_3g088110 29.193 161 88 7 4 148 7 157 8.28e-14 68.9
MS.gene026369.t1 MTR_3g093050 26.531 196 112 8 1 177 19 201 8.89e-14 69.7
MS.gene026369.t1 MTR_3g093050 26.531 196 112 8 1 177 19 201 1.06e-13 69.7
MS.gene026369.t1 MTR_8g093790 29.310 174 101 7 4 174 10 164 1.17e-13 67.0
MS.gene026369.t1 MTR_7g085220 27.326 172 92 8 4 150 8 171 1.22e-13 68.9
MS.gene026369.t1 MTR_6g084430 32.051 156 86 7 4 148 5 151 1.53e-13 68.6
MS.gene026369.t1 MTR_1g090720 32.121 165 86 6 4 149 42 199 2.85e-13 68.2
MS.gene026369.t1 MTR_4g108760 31.250 160 86 8 4 148 17 167 2.89e-13 68.2
MS.gene026369.t1 MTR_5g069030 29.762 168 86 8 1 149 22 176 3.35e-13 68.2
MS.gene026369.t1 MTR_7g097090 32.680 153 85 7 4 146 10 154 4.32e-13 67.0
MS.gene026369.t1 MTR_3g109340 29.114 158 94 6 2 148 20 170 6.44e-13 67.0
MS.gene026369.t1 MTR_2g079990 32.374 139 77 6 4 135 16 144 1.08e-12 66.2
MS.gene026369.t1 MTR_8g023840 29.412 153 91 6 4 146 11 156 1.49e-12 66.2
MS.gene026369.t1 MTR_8g467490 27.647 170 92 6 2 148 12 173 1.64e-12 65.9
MS.gene026369.t1 MTR_3g435150 32.298 161 85 9 3 148 15 166 1.78e-12 65.5
MS.gene026369.t1 MTR_7g005280 31.410 156 90 7 4 150 15 162 2.57e-12 64.3
MS.gene026369.t1 MTR_4g098630 30.435 161 91 9 4 149 6 160 3.97e-12 64.3
MS.gene026369.t1 MTR_1g097300 34.074 135 72 5 6 132 21 146 4.90e-12 64.7
MS.gene026369.t1 MTR_8g093580 29.375 160 87 7 6 149 8 157 5.10e-12 64.7
MS.gene026369.t1 MTR_6g012670 28.994 169 93 9 4 154 20 179 9.69e-12 63.5
MS.gene026369.t1 MTR_3g098810 28.144 167 92 7 4 150 14 172 1.50e-11 62.0
MS.gene026369.t1 MTR_4g052620 28.049 164 93 8 2 146 3 160 1.72e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026369.t1 AT3G17730 33.750 160 84 8 4 149 6 157 5.93e-19 82.4
MS.gene026369.t1 AT2G24430 34.591 159 85 6 2 148 14 165 6.90e-18 80.9
MS.gene026369.t1 AT2G24430 34.591 159 85 6 2 148 14 165 6.90e-18 80.9
MS.gene026369.t1 AT5G62380 30.769 195 106 8 4 185 7 185 1.36e-17 80.1
MS.gene026369.t1 AT5G62380 30.769 195 106 8 4 185 7 185 1.36e-17 80.1
MS.gene026369.t1 AT4G36160 32.051 156 89 5 4 148 14 163 2.22e-17 79.7
MS.gene026369.t1 AT4G36160 32.051 156 89 5 4 148 10 159 2.42e-17 79.7
MS.gene026369.t1 AT4G36160 32.051 156 89 5 4 148 10 159 2.42e-17 79.7
MS.gene026369.t1 AT4G17980 26.066 211 128 6 4 195 6 207 2.80e-17 78.2
MS.gene026369.t1 AT4G17980 25.943 212 129 6 3 195 5 207 4.84e-17 78.2
MS.gene026369.t1 AT1G12260 33.962 159 82 8 4 148 7 156 9.08e-17 77.8
MS.gene026369.t1 AT3G10490 31.875 160 88 6 4 149 27 179 1.12e-16 76.3
MS.gene026369.t1 AT2G18060 31.210 157 91 5 4 149 9 159 1.28e-16 77.8
MS.gene026369.t1 AT2G18060 31.210 157 91 5 4 149 9 159 1.28e-16 77.8
MS.gene026369.t1 AT1G76420 33.125 160 82 7 4 148 22 171 1.42e-16 77.4
MS.gene026369.t1 AT1G62700 33.333 156 87 6 4 148 7 156 1.51e-16 77.8
MS.gene026369.t1 AT1G62700 33.333 156 87 6 4 148 7 156 1.51e-16 77.8
MS.gene026369.t1 AT1G12260 33.962 159 82 8 4 148 7 156 1.84e-16 77.4
MS.gene026369.t1 AT5G66300 30.380 158 92 5 4 149 12 163 3.72e-16 75.5
MS.gene026369.t1 AT1G54330 31.410 156 90 6 4 149 6 154 3.88e-16 75.9
MS.gene026369.t1 AT1G71930 30.769 156 91 5 4 148 9 158 4.05e-16 75.9
MS.gene026369.t1 AT1G71930 30.769 156 91 5 4 148 9 158 4.05e-16 75.9
MS.gene026369.t1 AT3G10490 31.875 160 88 6 4 149 27 179 9.49e-16 75.5
MS.gene026369.t1 AT5G64530 30.928 194 100 7 4 176 3 183 2.21e-15 71.6
MS.gene026369.t1 AT3G10480 31.875 160 88 6 4 149 27 179 2.32e-15 74.3
MS.gene026369.t1 AT5G39610 32.298 161 85 8 4 149 20 171 2.59e-15 73.2
MS.gene026369.t1 AT3G10480 31.447 159 89 6 4 149 27 178 7.08e-15 73.2
MS.gene026369.t1 AT4G27410 28.652 178 88 8 4 151 14 182 9.80e-15 72.0
MS.gene026369.t1 AT5G46590 31.847 157 85 7 4 145 6 155 2.43e-14 70.5
MS.gene026369.t1 AT3G18400 32.484 157 85 9 4 148 5 152 3.13e-14 70.5
MS.gene026369.t1 AT5G04395 33.557 149 78 6 4 135 28 172 3.16e-14 68.6
MS.gene026369.t1 AT5G61430 31.902 163 87 8 4 151 16 169 3.85e-14 70.5
MS.gene026369.t1 AT1G32510 29.586 169 89 7 3 149 5 165 4.81e-14 69.7
MS.gene026369.t1 AT4G10350 32.051 156 87 7 4 146 9 158 6.19e-14 69.7
MS.gene026369.t1 AT1G26870 29.412 170 89 6 2 148 14 175 6.59e-14 70.1
MS.gene026369.t1 AT5G22290 29.655 145 91 5 6 145 23 161 1.63e-13 68.6
MS.gene026369.t1 AT2G33480 32.484 157 87 7 4 150 15 162 1.74e-13 67.8
MS.gene026369.t1 AT3G29035 31.646 158 84 7 4 146 24 172 1.97e-13 68.2
MS.gene026369.t1 AT3G49530 25.877 228 132 10 1 203 10 225 2.61e-13 68.2
MS.gene026369.t1 AT3G49530 25.877 228 132 10 1 203 10 225 2.92e-13 68.2
MS.gene026369.t1 AT5G13180 29.487 156 96 5 4 151 14 163 3.43e-13 67.0
MS.gene026369.t1 AT5G07680 32.317 164 85 9 4 151 17 170 3.83e-13 67.4
MS.gene026369.t1 AT5G07680 32.317 164 85 9 4 151 3 156 4.56e-13 67.4
MS.gene026369.t1 AT2G43000 29.936 157 87 6 6 148 20 167 6.95e-13 66.2
MS.gene026369.t1 AT3G10500 31.013 158 89 6 4 148 9 159 8.74e-13 67.0
MS.gene026369.t1 AT5G64530 34.884 129 71 5 4 132 3 118 1.26e-12 63.5
MS.gene026369.t1 AT5G04410 28.750 160 90 6 4 148 9 159 1.62e-12 66.2
MS.gene026369.t1 AT4G35580 27.429 175 97 8 1 155 6 170 1.71e-12 66.2
MS.gene026369.t1 AT4G35580 27.429 175 97 8 1 155 6 170 1.90e-12 65.9
MS.gene026369.t1 AT4G35580 27.429 175 97 8 1 155 6 170 2.05e-12 65.9
MS.gene026369.t1 AT3G15510 28.758 153 95 5 10 155 23 168 2.27e-12 65.5
MS.gene026369.t1 AT5G24590 28.659 164 88 7 4 149 13 165 2.35e-12 65.5
MS.gene026369.t1 AT1G33060 27.381 168 88 7 1 148 21 174 2.63e-12 65.9
MS.gene026369.t1 AT1G33060 27.381 168 88 7 1 148 21 174 2.80e-12 65.5
MS.gene026369.t1 AT3G04060 29.834 181 102 8 4 168 20 191 4.38e-12 64.7
MS.gene026369.t1 AT5G46590 31.655 139 81 6 4 135 6 137 5.98e-12 63.9
MS.gene026369.t1 AT5G18270 30.864 162 87 8 4 149 21 173 6.73e-12 63.9
MS.gene026369.t1 AT5G18270 30.864 162 87 8 4 149 21 173 6.93e-12 63.9
MS.gene026369.t1 AT5G50820 32.353 136 77 5 4 135 17 141 7.20e-12 62.4
MS.gene026369.t1 AT3G12977 27.624 181 97 8 4 164 18 184 1.54e-11 62.8
MS.gene026369.t1 AT5G09330 28.571 161 89 6 4 148 6 156 2.08e-11 62.8
MS.gene026369.t1 AT5G09330 28.571 161 89 6 4 148 6 156 2.08e-11 62.8
MS.gene026369.t1 AT5G09330 28.571 161 89 6 4 148 6 156 2.08e-11 62.8
MS.gene026369.t1 AT5G09330 28.571 161 89 6 4 148 6 156 2.08e-11 62.8
MS.gene026369.t1 AT5G09330 28.571 161 89 6 4 148 6 156 2.08e-11 62.8
MS.gene026369.t1 AT5G53950 28.750 160 92 6 4 148 17 169 7.30e-11 61.2

Find 49 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATCTGGACTTTGAATT+TGG 0.132617 1.1:+19425921 MS.gene026369:CDS
GGCATTGTAAGACTGGATTT+TGG 0.240614 1.1:+19425594 MS.gene026369:CDS
CCATGGTTCTGACCTGATTA+AGG 0.246294 1.1:+19425460 MS.gene026369:CDS
CCGTTTGAATTGCATCTTGC+TGG 0.261249 1.1:+19425506 MS.gene026369:CDS
TGGATCTGGACTTTGAATTT+GGG 0.284440 1.1:+19425922 MS.gene026369:CDS
CCTCCTCAGCTCATCACTTT+TGG 0.293515 1.1:-19425573 None:intergenic
CCTTGTGTGAGGGAAGAAAA+AGG 0.370691 1.1:-19425531 None:intergenic
ACAGGTTTAGCTCCTTAATC+AGG 0.372764 1.1:-19425472 None:intergenic
TGAAGGAACTCAACAACTTA+AGG 0.384542 1.1:+19426004 MS.gene026369:CDS
GCAATTCAAACGGATCATAT+TGG 0.403266 1.1:-19425496 None:intergenic
AGTCCAGATCCATCCCTCTA+TGG 0.422416 1.1:-19425911 None:intergenic
CGTTTGAATTGCATCTTGCT+GGG 0.435164 1.1:+19425507 MS.gene026369:CDS
CAAACGGATCATATTGGTAC+AGG 0.462188 1.1:-19425490 None:intergenic
AGGTGATGCATCGCATTTCA+TGG 0.466939 1.1:+19426067 MS.gene026369:CDS
CTGAGGAGGCATTGTAAGAC+TGG 0.469451 1.1:+19425587 MS.gene026369:CDS
GAAGGAACTCAACAACTTAA+GGG 0.473282 1.1:+19426005 MS.gene026369:CDS
CCGCCATAGAGGGATGGATC+TGG 0.473585 1.1:+19425908 MS.gene026369:CDS
GTCGATGAAGGTGATGTTGC+TGG 0.479369 1.1:+19425957 MS.gene026369:CDS
GGATCTGGACTTTGAATTTG+GGG 0.498437 1.1:+19425923 MS.gene026369:CDS
GAAGAAGTTCAAAATTTCCA+TGG 0.507513 1.1:+19425443 MS.gene026369:CDS
TCTGATGAGCAGGCGAATGA+AGG 0.516658 1.1:+19425987 MS.gene026369:CDS
AGAACGCAATCAAAACTAGT+TGG 0.520035 1.1:+19425714 MS.gene026369:CDS
TGGTGACGACTCTGATGAGC+AGG 0.523906 1.1:+19425977 MS.gene026369:CDS
GATTTGCTTCCACCTGGTGT+TGG 0.532322 1.1:+19425365 MS.gene026369:CDS
ACCTTCATCGACATCAGATA+AGG 0.533255 1.1:-19425946 None:intergenic
ACTAGTTCTAGTGTTGATGC+TGG 0.545733 1.1:+19426035 MS.gene026369:CDS
CACTCTTGTTAACAACCCTC+AGG 0.546751 1.1:+19425751 MS.gene026369:CDS
TGGAGCTGATGACGTGTTGG+TGG 0.553560 1.1:+19425649 MS.gene026369:CDS
GCAATGGATTTGCTTCCACC+TGG 0.553681 1.1:+19425359 None:intergenic
CCAGCAAGATGCAATTCAAA+CGG 0.554864 1.1:-19425506 None:intergenic
CCAAAAGTGATGAGCTGAGG+AGG 0.564041 1.1:+19425573 MS.gene026369:CDS
CAGTAAAACTCCCTTGTGTG+AGG 0.577220 1.1:-19425542 None:intergenic
AAGGAACTCAACAACTTAAG+GGG 0.586043 1.1:+19426006 MS.gene026369:CDS
TGGATGCAGATGGGAGATGT+CGG 0.586450 1.1:+19425614 MS.gene026369:CDS
GCCTTATCTGATGTCGATGA+AGG 0.589295 1.1:+19425945 MS.gene026369:CDS
GATGTCGGAGACATTACTGT+TGG 0.593815 1.1:+19425629 MS.gene026369:CDS
AGTAAAACTCCCTTGTGTGA+GGG 0.603789 1.1:-19425541 None:intergenic
GTTGATGCTGGTGCTGAGCA+AGG 0.613426 1.1:+19426047 MS.gene026369:CDS
TGTTGGAGCTGATGACGTGT+TGG 0.619893 1.1:+19425646 MS.gene026369:CDS
CCTTAATCAGGTCAGAACCA+TGG 0.626777 1.1:-19425460 None:intergenic
TGGCAAGGTAGTAGCTAACA+AGG 0.628366 1.1:-19425409 None:intergenic
TAACAAGGAGTTCATCAGAA+GGG 0.633655 1.1:-19425394 None:intergenic
CTGCCAAAAGTGATGAGCTG+AGG 0.648920 1.1:+19425570 MS.gene026369:CDS
GGAGCTGATGACGTGTTGGT+GGG 0.656135 1.1:+19425650 MS.gene026369:CDS
GGGACGAAACCAACACCAGG+TGG 0.656589 1.1:-19425374 None:intergenic
CTAACAAGGAGTTCATCAGA+AGG 0.675712 1.1:-19425395 None:intergenic
AGGAACTCAACAACTTAAGG+GGG 0.684501 1.1:+19426007 MS.gene026369:CDS
GAAGGGACGAAACCAACACC+AGG 0.689839 1.1:-19425377 None:intergenic
CCAGATCCATCCCTCTATGG+CGG 0.691442 1.1:-19425908 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTAAAGAAAAATAAAA+AGG - chr1.1:19426692-19426711 None:intergenic 10.0%
!! TCAAAAATTATGTTTAATTA+CGG + chr1.1:19426415-19426434 MS.gene026369:intron 10.0%
!! TTTAATATAAATAATTGTGT+AGG + chr1.1:19425857-19425876 MS.gene026369:intron 10.0%
!!! TTAATTTATAACATGTTTTA+AGG - chr1.1:19426625-19426644 None:intergenic 10.0%
!! ATTATGAATACAAATGTTTA+AGG - chr1.1:19427024-19427043 None:intergenic 15.0%
!! TTAAACATTTGTATTCATAA+TGG + chr1.1:19427023-19427042 MS.gene026369:intron 15.0%
!! TTATGAATACAAATGTTTAA+GGG - chr1.1:19427023-19427042 None:intergenic 15.0%
!!! CTGATCTTATTTAAATTTAT+TGG + chr1.1:19426953-19426972 MS.gene026369:intron 15.0%
!!! CTTTTTAAAAAACTTTCATT+TGG + chr1.1:19427409-19427428 MS.gene026369:intron 15.0%
!!! TATTTTTCTTTAAGTTTTTG+TGG + chr1.1:19426695-19426714 MS.gene026369:intron 15.0%
!!! TTTTAAAAAGTTTATTAGTC+AGG - chr1.1:19427399-19427418 None:intergenic 15.0%
!! ATTAACCTTCAGAAATAAAT+AGG + chr1.1:19427604-19427623 MS.gene026369:intron 20.0%
!! ATTGAGTTATACGTAAATAT+TGG + chr1.1:19427254-19427273 MS.gene026369:intron 20.0%
!! CATAAAAATCATTGATATTG+TGG - chr1.1:19426229-19426248 None:intergenic 20.0%
!! GTTTGATATTGATATTTATC+AGG + chr1.1:19426828-19426847 MS.gene026369:intron 20.0%
!! TCGATGATTAATATATGTAT+TGG + chr1.1:19425818-19425837 MS.gene026369:intron 20.0%
!! TTAATTACGGAAATCAATAT+TGG + chr1.1:19426428-19426447 MS.gene026369:intron 20.0%
!!! AATATATTTTACCTGAAAAG+TGG - chr1.1:19426102-19426121 None:intergenic 20.0%
!!! CATAATTTTTGATACAATTG+TGG - chr1.1:19426407-19426426 None:intergenic 20.0%
!!! TATTACCAACTTTTAAATCA+TGG + chr1.1:19426253-19426272 MS.gene026369:intron 20.0%
!!! TTCAACATGCTATTTATAAA+GGG + chr1.1:19427287-19427306 MS.gene026369:intron 20.0%
!!! TTTCAACATGCTATTTATAA+AGG + chr1.1:19427286-19427305 MS.gene026369:intron 20.0%
! ACATGCAATTATTATCATTG+AGG - chr1.1:19427127-19427146 None:intergenic 25.0%
! CATAAATAATCCAAACACAA+TGG - chr1.1:19426353-19426372 None:intergenic 25.0%
! GTGTAAAATTGTCTTTCATA+AGG - chr1.1:19427227-19427246 None:intergenic 25.0%
! TATTCAAAACCTTTATGTGT+TGG + chr1.1:19426292-19426311 MS.gene026369:intron 25.0%
! TGAATAATACACATGTTTAC+TGG + chr1.1:19427463-19427482 MS.gene026369:intron 25.0%
! TTATACGTAAATATTGGAGT+TGG + chr1.1:19427260-19427279 MS.gene026369:intron 25.0%
!! CATCTTTTCGTGTAATTTTA+TGG + chr1.1:19426766-19426785 MS.gene026369:intron 25.0%
!! TCTCTCTTCTTTTTCTATAT+AGG + chr1.1:19425680-19425699 MS.gene026369:CDS 25.0%
!! TGGATGTAGAATTTTGTAAT+TGG - chr1.1:19426387-19426406 None:intergenic 25.0%
!!! AACTTCTTCATTGTTTTTGT+TGG - chr1.1:19425432-19425451 None:intergenic 25.0%
!!! AGCATTTTTCTTCTTTGTTT+TGG + chr1.1:19427179-19427198 MS.gene026369:intron 25.0%
!!! CTCGATATTTATTTTGTCAT+CGG + chr1.1:19426134-19426153 MS.gene026369:intron 25.0%
!!! GCATTTTTCTTCTTTGTTTT+GGG + chr1.1:19427180-19427199 MS.gene026369:intron 25.0%
!!! TCTTTCCTATTTATTTCTGA+AGG - chr1.1:19427612-19427631 None:intergenic 25.0%
CAAAAACTACCAACACATAA+AGG - chr1.1:19426304-19426323 None:intergenic 30.0%
GAAGAAGTTCAAAATTTCCA+TGG + chr1.1:19425443-19425462 MS.gene026369:CDS 30.0%
GCAATTTAAGCTTGCAATTA+TGG + chr1.1:19426909-19426928 MS.gene026369:intron 30.0%
TGTAAAATTCAGTTGCAAAG+AGG - chr1.1:19426479-19426498 None:intergenic 30.0%
! AATAAAAAGGACGTGTTTTG+AGG - chr1.1:19426679-19426698 None:intergenic 30.0%
! CTTTTCGTGTAATTTTATGG+TGG + chr1.1:19426769-19426788 MS.gene026369:intron 30.0%
!! ATGGAACTTATTTTCTGATG+TGG + chr1.1:19427073-19427092 MS.gene026369:intron 30.0%
!!! TTATGTGTTGGTAGTTTTTG+TGG + chr1.1:19426304-19426323 MS.gene026369:intron 30.0%
AAAATACCTCCATCATATGC+GGG + chr1.1:19426203-19426222 MS.gene026369:intron 35.0%
AAGGAACTCAACAACTTAAG+GGG + chr1.1:19426006-19426025 MS.gene026369:CDS 35.0%
AGAACGCAATCAAAACTAGT+TGG + chr1.1:19425714-19425733 MS.gene026369:CDS 35.0%
AGACTGACCATATGATGTTT+AGG + chr1.1:19427355-19427374 MS.gene026369:intron 35.0%
AGAGGATCAACAACATTAAC+TGG - chr1.1:19426461-19426480 None:intergenic 35.0%
ATGGATCTGGACTTTGAATT+TGG + chr1.1:19425921-19425940 MS.gene026369:CDS 35.0%
ATTGCAAGCTTAAATTGCTC+CGG - chr1.1:19426907-19426926 None:intergenic 35.0%
CAAAATACCTCCATCATATG+CGG + chr1.1:19426202-19426221 MS.gene026369:intron 35.0%
CGTGACCATGATTTAAAAGT+TGG - chr1.1:19426261-19426280 None:intergenic 35.0%
GAAGGAACTCAACAACTTAA+GGG + chr1.1:19426005-19426024 MS.gene026369:CDS 35.0%
GACTGACCATATGATGTTTA+GGG + chr1.1:19427356-19427375 MS.gene026369:intron 35.0%
GCAATTCAAACGGATCATAT+TGG - chr1.1:19425499-19425518 None:intergenic 35.0%
TAACAAGGAGTTCATCAGAA+GGG - chr1.1:19425397-19425416 None:intergenic 35.0%
TGAAGGAACTCAACAACTTA+AGG + chr1.1:19426004-19426023 MS.gene026369:CDS 35.0%
TGCATACCCTAAACATCATA+TGG - chr1.1:19427365-19427384 None:intergenic 35.0%
TGGATCTGGACTTTGAATTT+GGG + chr1.1:19425922-19425941 MS.gene026369:CDS 35.0%
TTAAATCATGGTCACGCTAT+AGG + chr1.1:19426265-19426284 MS.gene026369:intron 35.0%
! GAAAGACAATTTTACACGAG+AGG + chr1.1:19427230-19427249 MS.gene026369:intron 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG - chr1.1:19425427-19425446 None:intergenic 35.0%
!!! TAGTTTTGATTGCGTTCTGA+GGG - chr1.1:19425712-19425731 None:intergenic 35.0%
ACCTTCATCGACATCAGATA+AGG - chr1.1:19425949-19425968 None:intergenic 40.0%
AGGAACTCAACAACTTAAGG+GGG + chr1.1:19426007-19426026 MS.gene026369:CDS 40.0%
AGTAAAACTCCCTTGTGTGA+GGG - chr1.1:19425544-19425563 None:intergenic 40.0%
ATGAAGCCAATGGAGAGATA+TGG - chr1.1:19427635-19427654 None:intergenic 40.0%
CAAACGGATCATATTGGTAC+AGG - chr1.1:19425493-19425512 None:intergenic 40.0%
CCAAACACAATGGAGCTATT+TGG - chr1.1:19426343-19426362 None:intergenic 40.0%
CCAAATAGCTCCATTGTGTT+TGG + chr1.1:19426340-19426359 MS.gene026369:intron 40.0%
CCAGCAAGATGCAATTCAAA+CGG - chr1.1:19425509-19425528 None:intergenic 40.0%
CGTTTGAATTGCATCTTGCT+GGG + chr1.1:19425507-19425526 MS.gene026369:CDS 40.0%
CTAACAAGGAGTTCATCAGA+AGG - chr1.1:19425398-19425417 None:intergenic 40.0%
GAAAGACCATATCTCTCCAT+TGG + chr1.1:19427626-19427645 MS.gene026369:intron 40.0%
GGATCTGGACTTTGAATTTG+GGG + chr1.1:19425923-19425942 MS.gene026369:CDS 40.0%
TTCCCAAATGACATACCTGA+GGG - chr1.1:19425769-19425788 None:intergenic 40.0%
TTTCCCAAATGACATACCTG+AGG - chr1.1:19425770-19425789 None:intergenic 40.0%
! AACCCTCAGGTATGTCATTT+GGG + chr1.1:19425764-19425783 MS.gene026369:intron 40.0%
! ACAGGTTTAGCTCCTTAATC+AGG - chr1.1:19425475-19425494 None:intergenic 40.0%
! ACTGGATTTTGGATGCAGAT+GGG + chr1.1:19425605-19425624 MS.gene026369:CDS 40.0%
! CTTTTTCTTCCCTCACACAA+GGG + chr1.1:19425532-19425551 MS.gene026369:CDS 40.0%
! GGCATTGTAAGACTGGATTT+TGG + chr1.1:19425594-19425613 MS.gene026369:CDS 40.0%
! TTTGAGATCAGTGAGTCACA+TGG - chr1.1:19427674-19427693 None:intergenic 40.0%
! TTTTGTCTAGTCCTGCTCTT+GGG + chr1.1:19426988-19427007 MS.gene026369:intron 40.0%
! TTTTTGTCTAGTCCTGCTCT+TGG + chr1.1:19426987-19427006 MS.gene026369:intron 40.0%
!! ACTAGTTCTAGTGTTGATGC+TGG + chr1.1:19426035-19426054 MS.gene026369:CDS 40.0%
!! CCATCAACTGAGTTCTAAGA+GGG - chr1.1:19427057-19427076 None:intergenic 40.0%
!! TCCATCAACTGAGTTCTAAG+AGG - chr1.1:19427058-19427077 None:intergenic 40.0%
!!! AGTTTTGATTGCGTTCTGAG+GGG - chr1.1:19425711-19425730 None:intergenic 40.0%
!!! CTAGTTTTGATTGCGTTCTG+AGG - chr1.1:19425713-19425732 None:intergenic 40.0%
AATCATGGTCACGCTATAGG+TGG + chr1.1:19426268-19426287 MS.gene026369:intron 45.0%
AGGTGATGCATCGCATTTCA+TGG + chr1.1:19426067-19426086 MS.gene026369:CDS 45.0%
AGTTCCAGTATGACGACATC+AGG + chr1.1:19427577-19427596 MS.gene026369:intron 45.0%
ATATTGTGGCCCGCATATGA+TGG - chr1.1:19426215-19426234 None:intergenic 45.0%
CAACCCTCAGGTATGTCATT+TGG + chr1.1:19425763-19425782 MS.gene026369:intron 45.0%
CACTCTTGTTAACAACCCTC+AGG + chr1.1:19425751-19425770 MS.gene026369:CDS 45.0%
CAGTAAAACTCCCTTGTGTG+AGG - chr1.1:19425545-19425564 None:intergenic 45.0%
CCCTCTTAGAACTCAGTTGA+TGG + chr1.1:19427054-19427073 MS.gene026369:intron 45.0%
CCGTTTGAATTGCATCTTGC+TGG + chr1.1:19425506-19425525 MS.gene026369:CDS 45.0%
CCTTAATCAGGTCAGAACCA+TGG - chr1.1:19425463-19425482 None:intergenic 45.0%
CCTTGTGTGAGGGAAGAAAA+AGG - chr1.1:19425534-19425553 None:intergenic 45.0%
CTCAACAACTTAAGGGGGTT+AGG + chr1.1:19426012-19426031 MS.gene026369:CDS 45.0%
CTCTATGGCGGTCAAAAACA+CGG - chr1.1:19425899-19425918 None:intergenic 45.0%
GATGTCGGAGACATTACTGT+TGG + chr1.1:19425629-19425648 MS.gene026369:CDS 45.0%
GCCTTATCTGATGTCGATGA+AGG + chr1.1:19425945-19425964 MS.gene026369:CDS 45.0%
GGATAAATACTCCCAAGAGC+AGG - chr1.1:19427002-19427021 None:intergenic 45.0%
GTTCCAGTATGACGACATCA+GGG + chr1.1:19427578-19427597 MS.gene026369:intron 45.0%
TGGCAAGGTAGTAGCTAACA+AGG - chr1.1:19425412-19425431 None:intergenic 45.0%
! CCTTTTTCTTCCCTCACACA+AGG + chr1.1:19425531-19425550 MS.gene026369:CDS 45.0%
! GACTGGATTTTGGATGCAGA+TGG + chr1.1:19425604-19425623 MS.gene026369:CDS 45.0%
!! CCATGGTTCTGACCTGATTA+AGG + chr1.1:19425460-19425479 MS.gene026369:CDS 45.0%
!! GTGTTTTTGACCGCCATAGA+GGG + chr1.1:19425898-19425917 MS.gene026369:CDS 45.0%
!! TCTCCATTGGCTTCATGTGA+CGG + chr1.1:19427639-19427658 MS.gene026369:intron 45.0%
AGTCCAGATCCATCCCTCTA+TGG - chr1.1:19425914-19425933 None:intergenic 50.0%
CCAAAAGTGATGAGCTGAGG+AGG + chr1.1:19425573-19425592 MS.gene026369:CDS 50.0%
CTGCCAAAAGTGATGAGCTG+AGG + chr1.1:19425570-19425589 MS.gene026369:CDS 50.0%
GAGATCAGTGAGTCACATGG+TGG - chr1.1:19427671-19427690 None:intergenic 50.0%
GTCGATGAAGGTGATGTTGC+TGG + chr1.1:19425957-19425976 MS.gene026369:CDS 50.0%
TCTGATGAGCAGGCGAATGA+AGG + chr1.1:19425987-19426006 MS.gene026369:CDS 50.0%
TGGATGCAGATGGGAGATGT+CGG + chr1.1:19425614-19425633 MS.gene026369:CDS 50.0%
TTGCCCTGATGTCGTCATAC+TGG - chr1.1:19427584-19427603 None:intergenic 50.0%
! CCTCCTCAGCTCATCACTTT+TGG - chr1.1:19425576-19425595 None:intergenic 50.0%
! GATTTGCTTCCACCTGGTGT+TGG + chr1.1:19425365-19425384 MS.gene026369:CDS 50.0%
! TGTTGGAGCTGATGACGTGT+TGG + chr1.1:19425646-19425665 MS.gene026369:CDS 50.0%
! TTTTGACCGCCATAGAGGGA+TGG + chr1.1:19425902-19425921 MS.gene026369:CDS 50.0%
!! CGTGTTTTTGACCGCCATAG+AGG + chr1.1:19425897-19425916 MS.gene026369:CDS 50.0%
!! CTGAGGAGGCATTGTAAGAC+TGG + chr1.1:19425587-19425606 MS.gene026369:CDS 50.0%
!!! GGCTACTCAAGCCACTTTTC+AGG + chr1.1:19426088-19426107 MS.gene026369:CDS 50.0%
CCAGATCCATCCCTCTATGG+CGG - chr1.1:19425911-19425930 None:intergenic 55.0%
GAAGGGACGAAACCAACACC+AGG - chr1.1:19425380-19425399 None:intergenic 55.0%
GCACCGTCACATGAAGCCAA+TGG - chr1.1:19427645-19427664 None:intergenic 55.0%
TGACTGTGTTGTGTCCCACG+TGG + chr1.1:19426870-19426889 MS.gene026369:intron 55.0%
TTGTGGCCCGCATATGATGG+AGG - chr1.1:19426212-19426231 None:intergenic 55.0%
! GGAGCTGATGACGTGTTGGT+GGG + chr1.1:19425650-19425669 MS.gene026369:CDS 55.0%
! GTTGATGCTGGTGCTGAGCA+AGG + chr1.1:19426047-19426066 MS.gene026369:CDS 55.0%
! TGGAGCTGATGACGTGTTGG+TGG + chr1.1:19425649-19425668 MS.gene026369:CDS 55.0%
! TGGTGACGACTCTGATGAGC+AGG + chr1.1:19425977-19425996 MS.gene026369:CDS 55.0%
CCACGTGGAAGCTATGACGC+CGG + chr1.1:19426885-19426904 MS.gene026369:intron 60.0%
CCGCCATAGAGGGATGGATC+TGG + chr1.1:19425908-19425927 MS.gene026369:CDS 60.0%
CGGCGTCATAGCTTCCACGT+GGG - chr1.1:19426887-19426906 None:intergenic 60.0%
GGGACGAAACCAACACCAGG+TGG - chr1.1:19425377-19425396 None:intergenic 60.0%
CCGGCGTCATAGCTTCCACG+TGG - chr1.1:19426888-19426907 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 19425362 19427717 19425362 ID=MS.gene026369
chr1.1 mRNA 19425362 19427717 19425362 ID=MS.gene026369.t1;Parent=MS.gene026369
chr1.1 exon 19425362 19425772 19425362 ID=MS.gene026369.t1.exon1;Parent=MS.gene026369.t1
chr1.1 CDS 19425362 19425772 19425362 ID=cds.MS.gene026369.t1;Parent=MS.gene026369.t1
chr1.1 exon 19425879 19426109 19425879 ID=MS.gene026369.t1.exon2;Parent=MS.gene026369.t1
chr1.1 CDS 19425879 19426109 19425879 ID=cds.MS.gene026369.t1;Parent=MS.gene026369.t1
chr1.1 exon 19427715 19427717 19427715 ID=MS.gene026369.t1.exon3;Parent=MS.gene026369.t1
chr1.1 CDS 19427715 19427717 19427715 ID=cds.MS.gene026369.t1;Parent=MS.gene026369.t1
Gene Sequence

>MS.gene026369

ATGGATTTGCTTCCACCTGGTGTTGGTTTCGTCCCTTCTGATGAACTCCTTGTTAGCTACTACCTTGCCAACAAAAACAATGAAGAAGTTCAAAATTTCCATGGTTCTGACCTGATTAAGGAGCTAAACCTGTACCAATATGATCCGTTTGAATTGCATCTTGCTGGGTCCTTTTTCTTCCCTCACACAAGGGAGTTTTACTGCTTCACTGCCAAAAGTGATGAGCTGAGGAGGCATTGTAAGACTGGATTTTGGATGCAGATGGGAGATGTCGGAGACATTACTGTTGGAGCTGATGACGTGTTGGTGGGAAAGAAGTCTCTCTTCTTTTTCTATATAGGAAATTCCCCTCAGAACGCAATCAAAACTAGTTGGACTATGTACGAGTACACTCTTGTTAACAACCCTCAGGTATGTCATTTGGGAAAACTAACTTTCAATATGTTCGTTATTTCATCGATGATTAATATATGTATTGGTAACGACTAACTATTGTTTAATATAAATAATTGTGTAGGCTTCTTTTGTTGTTTGCCGTGTTTTTGACCGCCATAGAGGGATGGATCTGGACTTTGAATTTGGGGCCTTATCTGATGTCGATGAAGGTGATGTTGCTGGTGACGACTCTGATGAGCAGGCGAATGAAGGAACTCAACAACTTAAGGGGGTTAGGACTAGTTCTAGTGTTGATGCTGGTGCTGAGCAAGGTGATGCATCGCATTTCATGGCTACTCAAGCCACTTTTCAGGTAAAATATATTTCATTTTGATCTCTCGATATTTATTTTGTCATCGGCAACAATTTTACAATGCTTCACTTTCAATTAGACATGAGTTTGAACAAAATACCTCCATCATATGCGGGCCACAATATCAATGATTTTTATGTATGTATTACCAACTTTTAAATCATGGTCACGCTATAGGTGGCTATTCAAAACCTTTATGTGTTGGTAGTTTTTGTGGTTGATGTTTGAATCCAAATAGCTCCATTGTGTTTGGATTATTTATGTTTTGCAGTTTCCAATTACAAAATTCTACATCCACAATTGTATCAAAAATTATGTTTAATTACGGAAATCAATATTGGCAATTAACCAGTTAATGTTGTTGATCCTCTTTGCAACTGAATTTTACAACTCAATTCATTCATGTGATGTTATTTTTGTTTTATTTTGATCAATTTTATTGAATGTATCACTCTGCACATGTTTTTTTCTTTCTTTTTTTTCTTTTTTGTAAGTAGAAATTAAGTGATGATCCTTAAAACATGTTATAAATTAATACTAGTTAACATAGCTATTCTAACTAGATTCCTCAAAACACGTCCTTTTTATTTTTCTTTAAGTTTTTGTGGTATTAAATTCATTATTATTACTAATATATTCATCACTTTTTGACAAAGCATCTTTTCGTGTAATTTTATGGTGGAGAAAAGAAAGTGTTGCTGAAATATTGAATTTCTTTGTTTGATATTGATATTTATCAGGCGAGTTATGATGCATTTCTTGACTGTGTTGTGTCCCACGTGGAAGCTATGACGCCGGAGCAATTTAAGCTTGCAATTATGGACGAAGATTTTATTTAAATTGCTGATCTTATTTAAATTTATTGGTTTTTAAGACATTTTTGTCTAGTCCTGCTCTTGGGAGTATTTATCCCTTAAACATTTGTATTCATAATGGTCTGTTGACCCTCTTAGAACTCAGTTGATGGAACTTATTTTCTGATGTGGTTGATGCAATATTCATTGAATGTTCACGCCTCAATGATAATAATTGCATGTTAAACTCTTGAGTCGTATTTAAGAAATTATTCAGCATTTTTCTTCTTTGTTTTGGGCATGAAGATTTTTGTTCAATGCCTTATGAAAGACAATTTTACACGAGAGGAATTGAGTTATACGTAAATATTGGAGTTGGTTATTTCAACATGCTATTTATAAAGGGAAAAGAAAGTAAGACAAACAATAATGATAATTGATTCAACTTAAAAGACTGACCATATGATGTTTAGGGTATGCATATGACTATGACCTGACTAATAAACTTTTTAAAAAACTTTCATTTGGTATCTGATAGAAACTACAAATGTATAATTATTGAATAATACACATGTTTACTGGATAGAAAATAATTGTAGAAGAAAGTTGATAACACAATCTACAAAGAAAAATGCTATTGTGTGCGAAAACAAATTCGTGTCAATCACACGAAAGTTCCAGTATGACGACATCAGGGCAAATTAACCTTCAGAAATAAATAGGAAAGACCATATCTCTCCATTGGCTTCATGTGACGGTGCTTACCACCATGTGACTCACTGATCTCAAATACCCATCTATCTCTCTCTAGTGA
Protein sequence

>MS.gene026369.t1

MDLLPPGVGFVPSDELLVSYYLANKNNEEVQNFHGSDLIKELNLYQYDPFELHLAGSFFFPHTREFYCFTAKSDELRRHCKTGFWMQMGDVGDITVGADDVLVGKKSLFFFYIGNSPQNAIKTSWTMYEYTLVNNPQASFVVCRVFDRHRGMDLDFEFGALSDVDEGDVAGDDSDEQANEGTQQLKGVRTSSSVDAGAEQGDASHFMATQATFQ