AlfalfaGEDB | MS.gene026409

M. sativa cultivar XinJiangDaYe / MS.gene026409

KEGG: K14498
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026409.t1	XP_013466699.1	99.7	365	1	0	1	365	1	365	1.90E-199	704.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026409.t1	Q940H6	87.6	356	42	2	11	365	8	362	5.4e-174	611.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026409.t1	A0A072VGL4	99.7	365	1	0	1	365	1	365	1.4e-199	704.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026409.t1	MTR_1g034030	99.726	365	1	0	1	365	1	365	0.0	758
MS.gene026409.t1	MTR_4g086855	89.548	354	36	1	12	365	11	363	0.0	665
MS.gene026409.t1	MTR_8g079560	83.333	354	57	2	12	365	11	362	0.0	612
MS.gene026409.t1	MTR_5g018050	78.531	354	72	2	12	365	6	355	0.0	571
MS.gene026409.t1	MTR_1g034030	95.730	281	12	0	1	281	1	281	0.0	558
MS.gene026409.t1	MTR_4g099240	73.030	330	85	2	22	349	3	330	0.0	521
MS.gene026409.t1	MTR_4g086855	88.848	269	29	1	97	365	1	268	0.0	505
MS.gene026409.t1	MTR_2g006330	73.209	321	84	2	22	341	2	321	1.11e-178	500
MS.gene026409.t1	MTR_8g095330	76.412	301	70	1	22	321	3	303	3.90e-178	498
MS.gene026409.t1	MTR_5g064540	69.388	343	94	5	22	362	2	335	1.35e-177	496

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026409.t1	AT4G33950	87.079	356	44	2	11	365	8	362	0.0	626
MS.gene026409.t1	AT4G33950	88.923	325	35	1	11	335	8	331	0.0	610
MS.gene026409.t1	AT5G66880	79.609	358	71	2	8	365	6	361	0.0	587
MS.gene026409.t1	AT5G66880	79.609	358	71	2	8	365	6	361	0.0	587
MS.gene026409.t1	AT3G50500	75.068	365	88	3	1	365	1	362	0.0	564
MS.gene026409.t1	AT3G50500	73.656	372	88	4	1	365	1	369	0.0	558
MS.gene026409.t1	AT1G10940	75.248	303	70	2	22	321	2	302	7.20e-177	496
MS.gene026409.t1	AT1G60940	74.834	302	75	1	22	322	2	303	2.62e-175	492
MS.gene026409.t1	AT1G60940	74.834	302	75	1	22	322	2	303	2.62e-175	492
MS.gene026409.t1	AT5G08590	73.355	304	81	0	22	325	2	305	2.94e-174	489

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Find 93 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCACAAATCTTCAAACG+AGG	0.726740	1.1:-18890039	None:intergenic
AATAATGCAGATAATTAGCG+AGG	0.639753	1.1:+18891199	MS.gene026409:CDS
ACATTCACAACCAAAATCTA+CGG	0.593073	1.1:+18890183	MS.gene026409:CDS
ACCAACCAACATGACATATA+AGG	0.437995	1.1:-18890625	None:intergenic
ACCTTATATGTCATGTTGGT+TGG	0.492496	1.1:+18890624	MS.gene026409:CDS
ACTATGAATCATGTTAGACA+TGG	0.663903	1.1:+18888842	MS.gene026409:CDS
ACTGCTATCGATATCAAGGT+CGG	0.651041	1.1:-18891321	None:intergenic
ACTTAAGTTTCACCTGTGCA+GGG	0.589935	1.1:-18890872	None:intergenic
ACTTCAGGAGCGATATATGC+AGG	0.569068	1.1:-18890214	None:intergenic
AGATAGATGAAAATGTACAA+AGG	0.631238	1.1:+18889471	MS.gene026409:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCACAAATCTTCAAACG+AGG	-	chr1.1:18890042-18890061	None:intergenic	30.0%
AATAATGCAGATAATTAGCG+AGG	+	chr1.1:18891199-18891218	MS.gene026409:CDS	30.0%
ACATTCACAACCAAAATCTA+CGG	+	chr1.1:18890183-18890202	MS.gene026409:CDS	30.0%
ACTATGAATCATGTTAGACA+TGG	+	chr1.1:18888842-18888861	MS.gene026409:CDS	30.0%
ATCACAATAGCTAAATGTGT+AGG	-	chr1.1:18889651-18889670	None:intergenic	30.0%
ATTTCTTCAATTGTCTGCAT+TGG	-	chr1.1:18891182-18891201	None:intergenic	30.0%
ATTTGCTTCCTGAAAGATAT+AGG	+	chr1.1:18889918-18889937	MS.gene026409:intron	30.0%
CATATTCCGAGTATATTTAC+CGG	-	chr1.1:18890450-18890469	None:intergenic	30.0%
GACGGATAAAAATACATCTA+AGG	-	chr1.1:18889596-18889615	None:intergenic	30.0%
GACTTAAAAGAAGTTGCAAA+AGG	-	chr1.1:18890709-18890728	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	18888833	18891367	18888833	ID=MS.gene026409
chr1.1	mRNA	18888833	18891367	18888833	ID=MS.gene026409.t1;Parent=MS.gene026409
chr1.1	exon	18888833	18889012	18888833	ID=MS.gene026409.t1.exon1;Parent=MS.gene026409.t1
chr1.1	CDS	18888833	18889012	18888833	ID=cds.MS.gene026409.t1;Parent=MS.gene026409.t1
chr1.1	exon	18889473	18889547	18889473	ID=MS.gene026409.t1.exon2;Parent=MS.gene026409.t1
chr1.1	CDS	18889473	18889547	18889473	ID=cds.MS.gene026409.t1;Parent=MS.gene026409.t1
chr1.1	exon	18889636	18889737	18889636	ID=MS.gene026409.t1.exon3;Parent=MS.gene026409.t1
chr1.1	CDS	18889636	18889737	18889636	ID=cds.MS.gene026409.t1;Parent=MS.gene026409.t1
chr1.1	exon	18889820	18889873	18889820	ID=MS.gene026409.t1.exon4;Parent=MS.gene026409.t1
chr1.1	CDS	18889820	18889873	18889820	ID=cds.MS.gene026409.t1;Parent=MS.gene026409.t1
chr1.1	exon	18889982	18890074	18889982	ID=MS.gene026409.t1.exon5;Parent=MS.gene026409.t1
chr1.1	CDS	18889982	18890074	18889982	ID=cds.MS.gene026409.t1;Parent=MS.gene026409.t1
chr1.1	exon	18890172	18890264	18890172	ID=MS.gene026409.t1.exon6;Parent=MS.gene026409.t1
chr1.1	CDS	18890172	18890264	18890172	ID=cds.MS.gene026409.t1;Parent=MS.gene026409.t1
chr1.1	exon	18890597	18890701	18890597	ID=MS.gene026409.t1.exon7;Parent=MS.gene026409.t1
chr1.1	CDS	18890597	18890701	18890597	ID=cds.MS.gene026409.t1;Parent=MS.gene026409.t1
chr1.1	exon	18890783	18890881	18890783	ID=MS.gene026409.t1.exon8;Parent=MS.gene026409.t1
chr1.1	CDS	18890783	18890881	18890783	ID=cds.MS.gene026409.t1;Parent=MS.gene026409.t1
chr1.1	exon	18891071	18891367	18891071	ID=MS.gene026409.t1.exon9;Parent=MS.gene026409.t1
chr1.1	CDS	18891071	18891367	18891071	ID=cds.MS.gene026409.t1;Parent=MS.gene026409.t1

Gene Sequence

>MS.gene026409

ATGGATCCTACTATGAATCATGTTAGACATGGAGGAATGGATATACAGATTATGCATGAGAGTGATAGATATGAGCTTGTACGTGATATTGGGTCTGGGAATTTTGGGGTGGCTAGGCTTATGAGAGATAAGCATACCAATCAACTTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGGTTTGATCTTAATTTCTCTCTGCTCTTTTTCTTTTTTCTATTTTTGTGTTATTGTATTACTTTCTCTGTTTTGTTTTATGTATATGTGAATTGAAATTTGGTAACTTGGTTATTGATTTTTTTTTATTTTTAAATTTTGATGTCAAATATCAATATTTTTGTTGAAAGTGATTAAAGCATAAAGTGAGAAAATCAAGAGTTGTTATTTGGTAACTTAGTTATTAGCGGAGCCGAATCCGTGGAACGGAAGATTTTGATGGATGGTGTATTAGTTTTGAGTTGGTTAGTGAAAAGATGTGTTAATGTAAAAAATGTTTTTGTAATTGCTTGAAATCTTTCAATTTCATCGGGATTTACATGCTTAGCTTTGAGGTAGAGTGAATTGAGTTTTTGGAAGGAATTAGATGCATATGATTTTCAATGCTTGATATTGAATTTAACCAAACCTATTTTTTAACAGATAGATGAAAATGTACAAAGGGAAATTATAAATCATAGATCATTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTTTGTACTCTTTATACATCGAGGGCCTTATCGTATTTCTTCCAACCTTAGATGTATTTTTATCCGTCCTCATACTCGTCAAATATAGGTCATACTTACCCCTACACATTTAGCTATTGTGATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGACGGTTCAGCGAGGATGAGGTTCTTATCATATTCAATACATGGATTTTGAATGCAGTACCGCTGCTGCGGTTAACGTTAGTGACCGTTGTTTGTGCTGCAGGCACGGTTTTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGGTACATAATTACGCCACACCGAGTCTTTAGTTTCTCAATATTGCATTTGCTTCCTGAAAGATATAGGGAAATGCCTGACTCGAATATCTTTGTCTTTTTTTAATAAAGCAAGTATGTCATCGTGATTTGAAATTGGAGAATACATTGCTCGATGGTAGTCCGGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGGTATACTATGATTAAGCAAATTAATGTCTTTCATTTATCTTTGGTGAAATGATTGTCGATATCTATGATGAAAATCTTGGCTGTCTTACTTCTGCAGTCCTCAGTGCTACATTCACAACCAAAATCTACGGTCGGTACACCTGCATATATCGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGGTAATTTGTAATTCCAATCCTTAGAAGGAAAATCAATTAACCAATGACAGACATTCTGAAAATTTCTGATTGCGATGCTCAATTGTCTTCTCTTTTTTGAAATGTTTTGTTTGTCTGTACCTAATTAGACTATTGTTGTTTTGCTGTAAGTTTCAGTTGGTTGACATTAGTTACTACAACCACCGGTAAATATACTCGGAATATGTGTGATTTTTCTCACATGAAGATTTGTAAATACTAAATGTTATTGCAGAAACACTGCTTTCAAACCAGCTAGCTTTTTCTTGTTTAAGAAACCTTCTTACTGATGTTGTCTTGTCGCTATGGCTCAGATTGCAGATGTGTGGTCTTGCGGGGTGACCTTATATGTCATGTTGGTTGGTGCGTATCCTTTCGAGGATCCGGAGGAGCCTAAAAATTTTCGGAAGACTATTCATGTAACCTTTTGCAACTTCTTTTAAGTCAATGCAGCAATGACATTGAATCACTATTTTTGAAATTCTGGATTTTGATTGCAGAGGATTTTGAAAGTCCAATACTCAATACCTGATTATGTTCAAATATCTCCCGAGTGCCGTCATCTGATCTCAAGGATCTTCGTTGGAGACCCTGCACAGGTGAAACTTAAGTGCTTTTTATGTAGCTTAAATATGTTTTTGGTCCCTGTAATGTATCTATTTTTTCGTTTTAGTCCTTGTAAATTTGTTTTCATAATGTTCCTTGTAATTTTCAAGGACTAAAACAAAAAGAGCTTAAAGATGATGACATTATCTTTCAATTGGAAACTTAACATTGTTTTGAAACAGAGAATAAGCATGCCGGAGATTCGAAACCACGATTGGTTTTTGAAGAACCTTCCAGCTGATCTTATCGTTGGGAATACAACGAGCGAGCAGTTTCAGGAGCCTGAACAACCAATGCAGACAATTGAAGAAATAATGCAGATAATTAGCGAGGCTACTATTCCTGCAGCCGGAACTCATCAGTCTCTCACTCAGTATCTTACCGGTAGCTTGGACATCGATGACGAAATGGACGAGGATATAGATACTGATCCCGACCTTGATATCGATAGCAGTGGTGAAATAGTTTATGCAATGTAA

Protein sequence

>MS.gene026409.t1

MDPTMNHVRHGGMDIQIMHESDRYELVRDIGSGNFGVARLMRDKHTNQLVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVQISPECRHLISRIFVGDPAQRISMPEIRNHDWFLKNLPADLIVGNTTSEQFQEPEQPMQTIEEIMQIISEATIPAAGTHQSLTQYLTGSLDIDDEMDEDIDTDPDLDIDSSGEIVYAM