Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026420.t1 | XP_013442314.1 | 96.1 | 230 | 9 | 0 | 1 | 230 | 1 | 230 | 5.40E-123 | 450.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026420.t1 | Q700D9 | 72.2 | 79 | 17 | 1 | 1 | 74 | 1 | 79 | 5.9e-25 | 115.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026420.t1 | A0A072TFN8 | 96.1 | 230 | 9 | 0 | 1 | 230 | 1 | 230 | 3.9e-123 | 450.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026420.t1 | TF | GARP-G2-like |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026420.t1 | MTR_0223s0040 | 96.087 | 230 | 9 | 0 | 1 | 230 | 1 | 230 | 9.24e-167 | 461 |
MS.gene026420.t1 | MTR_1g112370 | 47.566 | 267 | 94 | 10 | 2 | 223 | 3 | 268 | 9.63e-63 | 199 |
MS.gene026420.t1 | MTR_2g023580 | 78.788 | 66 | 14 | 0 | 9 | 74 | 46 | 111 | 1.19e-32 | 119 |
MS.gene026420.t1 | MTR_2g084230 | 69.737 | 76 | 23 | 0 | 5 | 80 | 84 | 159 | 1.63e-31 | 117 |
MS.gene026420.t1 | MTR_2g084230 | 69.737 | 76 | 23 | 0 | 5 | 80 | 84 | 159 | 2.45e-31 | 118 |
MS.gene026420.t1 | MTR_8g086410 | 68.000 | 75 | 24 | 0 | 6 | 80 | 99 | 173 | 1.81e-30 | 117 |
MS.gene026420.t1 | MTR_8g086410 | 68.000 | 75 | 24 | 0 | 6 | 80 | 97 | 171 | 1.84e-30 | 117 |
MS.gene026420.t1 | MTR_2g016220 | 64.286 | 84 | 25 | 1 | 6 | 84 | 77 | 160 | 8.65e-30 | 114 |
MS.gene026420.t1 | MTR_2g016220 | 64.286 | 84 | 25 | 1 | 6 | 84 | 77 | 160 | 9.03e-30 | 114 |
MS.gene026420.t1 | MTR_7g069660 | 67.143 | 70 | 23 | 0 | 3 | 72 | 56 | 125 | 1.41e-28 | 110 |
MS.gene026420.t1 | MTR_8g086410 | 62.195 | 82 | 24 | 1 | 6 | 80 | 99 | 180 | 6.99e-28 | 110 |
MS.gene026420.t1 | MTR_2g016220 | 61.364 | 88 | 25 | 2 | 6 | 84 | 77 | 164 | 1.33e-27 | 108 |
MS.gene026420.t1 | MTR_3g450310 | 63.636 | 66 | 24 | 0 | 10 | 75 | 11 | 76 | 6.75e-25 | 97.8 |
MS.gene026420.t1 | MTR_6g071625 | 64.407 | 59 | 21 | 0 | 17 | 75 | 201 | 259 | 6.04e-22 | 92.8 |
MS.gene026420.t1 | MTR_8g066310 | 67.241 | 58 | 19 | 0 | 17 | 74 | 172 | 229 | 9.97e-22 | 92.0 |
MS.gene026420.t1 | MTR_5g029470 | 65.517 | 58 | 20 | 0 | 17 | 74 | 218 | 275 | 5.44e-21 | 90.5 |
MS.gene026420.t1 | MTR_3g064840 | 65.517 | 58 | 20 | 0 | 17 | 74 | 273 | 330 | 1.00e-20 | 90.1 |
MS.gene026420.t1 | MTR_1g080330 | 69.643 | 56 | 17 | 0 | 19 | 74 | 176 | 231 | 1.44e-20 | 88.2 |
MS.gene026420.t1 | MTR_1g021520 | 59.701 | 67 | 26 | 1 | 9 | 74 | 116 | 182 | 1.47e-20 | 88.2 |
MS.gene026420.t1 | MTR_1g080330 | 69.643 | 56 | 17 | 0 | 19 | 74 | 176 | 231 | 1.49e-20 | 89.4 |
MS.gene026420.t1 | MTR_7g115530 | 67.857 | 56 | 18 | 0 | 19 | 74 | 219 | 274 | 2.67e-20 | 87.4 |
MS.gene026420.t1 | MTR_7g098250 | 67.857 | 56 | 18 | 0 | 19 | 74 | 263 | 318 | 5.77e-20 | 88.2 |
MS.gene026420.t1 | MTR_7g115530 | 67.857 | 56 | 18 | 0 | 19 | 74 | 219 | 274 | 5.90e-20 | 87.0 |
MS.gene026420.t1 | MTR_7g115530 | 67.857 | 56 | 18 | 0 | 19 | 74 | 219 | 274 | 5.97e-20 | 87.8 |
MS.gene026420.t1 | MTR_7g115530 | 67.857 | 56 | 18 | 0 | 19 | 74 | 219 | 274 | 1.74e-19 | 85.9 |
MS.gene026420.t1 | MTR_5g027440 | 56.716 | 67 | 29 | 0 | 5 | 71 | 12 | 78 | 5.97e-18 | 80.9 |
MS.gene026420.t1 | MTR_7g115530 | 67.308 | 52 | 17 | 0 | 19 | 70 | 219 | 270 | 6.22e-18 | 80.9 |
MS.gene026420.t1 | MTR_7g115530 | 70.000 | 50 | 15 | 0 | 19 | 68 | 219 | 268 | 7.91e-18 | 80.5 |
MS.gene026420.t1 | MTR_5g041350 | 51.316 | 76 | 34 | 1 | 19 | 94 | 16 | 88 | 1.23e-17 | 80.9 |
MS.gene026420.t1 | MTR_6g032990 | 60.000 | 60 | 21 | 1 | 19 | 75 | 43 | 102 | 3.19e-17 | 80.1 |
MS.gene026420.t1 | MTR_5g060610 | 58.824 | 68 | 13 | 2 | 1 | 67 | 1 | 54 | 6.02e-17 | 72.4 |
MS.gene026420.t1 | MTR_6g444980 | 39.062 | 128 | 58 | 3 | 19 | 146 | 36 | 143 | 2.63e-16 | 77.0 |
MS.gene026420.t1 | MTR_2g086450 | 60.377 | 53 | 21 | 0 | 19 | 71 | 46 | 98 | 2.86e-16 | 77.0 |
MS.gene026420.t1 | MTR_6g444980 | 39.062 | 128 | 58 | 3 | 19 | 146 | 36 | 143 | 3.01e-16 | 77.0 |
MS.gene026420.t1 | MTR_2g027800 | 52.055 | 73 | 29 | 1 | 19 | 85 | 40 | 112 | 4.61e-16 | 75.9 |
MS.gene026420.t1 | MTR_7g093030 | 55.738 | 61 | 27 | 0 | 14 | 74 | 208 | 268 | 4.92e-16 | 75.9 |
MS.gene026420.t1 | MTR_7g093030 | 55.738 | 61 | 27 | 0 | 14 | 74 | 208 | 268 | 6.52e-16 | 76.3 |
MS.gene026420.t1 | MTR_1g090670 | 62.264 | 53 | 20 | 0 | 19 | 71 | 45 | 97 | 2.34e-15 | 73.9 |
MS.gene026420.t1 | MTR_1g053835 | 62.069 | 58 | 21 | 1 | 14 | 71 | 255 | 311 | 3.45e-15 | 74.3 |
MS.gene026420.t1 | MTR_2g027800 | 62.264 | 53 | 20 | 0 | 19 | 71 | 40 | 92 | 3.48e-15 | 73.6 |
MS.gene026420.t1 | MTR_7g088070 | 67.308 | 52 | 17 | 0 | 20 | 71 | 52 | 103 | 3.65e-15 | 73.2 |
MS.gene026420.t1 | MTR_2g027860 | 53.425 | 73 | 33 | 1 | 20 | 91 | 51 | 123 | 3.93e-15 | 73.6 |
MS.gene026420.t1 | MTR_7g088070 | 67.308 | 52 | 17 | 0 | 20 | 71 | 52 | 103 | 4.10e-15 | 72.8 |
MS.gene026420.t1 | MTR_4g081710 | 58.491 | 53 | 22 | 0 | 19 | 71 | 18 | 70 | 1.13e-14 | 72.4 |
MS.gene026420.t1 | MTR_1g053830 | 38.298 | 94 | 51 | 1 | 1 | 87 | 1 | 94 | 1.63e-14 | 67.4 |
MS.gene026420.t1 | MTR_1g053800 | 60.377 | 53 | 21 | 0 | 20 | 72 | 179 | 231 | 3.54e-14 | 70.9 |
MS.gene026420.t1 | MTR_4g021790 | 48.529 | 68 | 33 | 2 | 5 | 71 | 154 | 220 | 3.41e-13 | 67.4 |
MS.gene026420.t1 | MTR_4g086835 | 63.265 | 49 | 18 | 0 | 23 | 71 | 279 | 327 | 4.43e-13 | 68.2 |
MS.gene026420.t1 | MTR_4g113140 | 61.224 | 49 | 19 | 0 | 23 | 71 | 240 | 288 | 2.27e-12 | 65.9 |
MS.gene026420.t1 | MTR_4g021855 | 46.575 | 73 | 35 | 2 | 16 | 85 | 166 | 237 | 1.13e-11 | 63.5 |
MS.gene026420.t1 | MTR_4g086835 | 63.265 | 49 | 17 | 1 | 23 | 71 | 279 | 326 | 1.45e-11 | 63.5 |
MS.gene026420.t1 | MTR_2g450070 | 50.909 | 55 | 26 | 1 | 17 | 71 | 212 | 265 | 1.49e-11 | 63.9 |
MS.gene026420.t1 | MTR_2g450070 | 50.909 | 55 | 26 | 1 | 17 | 71 | 212 | 265 | 1.68e-11 | 63.5 |
MS.gene026420.t1 | MTR_4g064730 | 49.231 | 65 | 32 | 1 | 7 | 71 | 120 | 183 | 2.90e-11 | 62.4 |
MS.gene026420.t1 | MTR_7g068600 | 56.364 | 55 | 21 | 1 | 20 | 71 | 15 | 69 | 3.14e-11 | 61.6 |
MS.gene026420.t1 | MTR_7g093010 | 52.830 | 53 | 25 | 0 | 20 | 72 | 215 | 267 | 4.61e-11 | 62.0 |
MS.gene026420.t1 | MTR_7g089010 | 56.364 | 55 | 23 | 1 | 17 | 71 | 90 | 143 | 6.07e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026420.t1 | AT1G14600 | 72.152 | 79 | 17 | 1 | 1 | 74 | 1 | 79 | 1.58e-32 | 119 |
MS.gene026420.t1 | AT2G02060 | 82.258 | 62 | 11 | 0 | 10 | 71 | 21 | 82 | 2.67e-31 | 115 |
MS.gene026420.t1 | AT2G02060 | 82.258 | 62 | 11 | 0 | 10 | 71 | 21 | 82 | 2.67e-31 | 115 |
MS.gene026420.t1 | AT4G04605 | 68.493 | 73 | 23 | 0 | 9 | 81 | 5 | 77 | 1.01e-30 | 113 |
MS.gene026420.t1 | AT2G40260 | 73.913 | 69 | 18 | 0 | 8 | 76 | 72 | 140 | 4.67e-29 | 112 |
MS.gene026420.t1 | AT2G38300 | 69.014 | 71 | 22 | 0 | 10 | 80 | 46 | 116 | 2.15e-27 | 107 |
MS.gene026420.t1 | AT2G42660 | 69.841 | 63 | 19 | 0 | 10 | 72 | 42 | 104 | 1.14e-26 | 103 |
MS.gene026420.t1 | AT4G04555 | 53.333 | 75 | 35 | 0 | 6 | 80 | 2 | 76 | 8.23e-23 | 89.4 |
MS.gene026420.t1 | AT1G32240 | 65.517 | 58 | 20 | 0 | 17 | 74 | 212 | 269 | 4.05e-21 | 90.9 |
MS.gene026420.t1 | AT1G32240 | 65.517 | 58 | 20 | 0 | 17 | 74 | 212 | 269 | 4.17e-21 | 90.9 |
MS.gene026420.t1 | AT5G16560 | 65.517 | 58 | 20 | 0 | 17 | 74 | 218 | 275 | 4.57e-21 | 90.9 |
MS.gene026420.t1 | AT5G42630 | 62.069 | 58 | 22 | 0 | 17 | 74 | 104 | 161 | 6.01e-21 | 87.8 |
MS.gene026420.t1 | AT4G17695 | 61.017 | 59 | 23 | 0 | 17 | 75 | 163 | 221 | 8.46e-21 | 89.4 |
MS.gene026420.t1 | AT5G42630 | 62.069 | 58 | 22 | 0 | 17 | 74 | 104 | 161 | 9.14e-21 | 88.6 |
MS.gene026420.t1 | AT4G04580 | 59.375 | 64 | 26 | 0 | 9 | 72 | 5 | 68 | 4.25e-20 | 84.0 |
MS.gene026420.t1 | AT4G28610 | 55.263 | 76 | 33 | 1 | 20 | 95 | 227 | 301 | 7.50e-19 | 84.7 |
MS.gene026420.t1 | AT5G45580 | 57.143 | 70 | 30 | 0 | 14 | 83 | 3 | 72 | 2.58e-18 | 81.6 |
MS.gene026420.t1 | AT5G45580 | 57.143 | 70 | 30 | 0 | 14 | 83 | 19 | 88 | 3.10e-18 | 81.6 |
MS.gene026420.t1 | AT3G04450 | 63.636 | 55 | 20 | 0 | 20 | 74 | 200 | 254 | 4.76e-18 | 82.4 |
MS.gene026420.t1 | AT3G04450 | 63.636 | 55 | 20 | 0 | 20 | 74 | 200 | 254 | 4.76e-18 | 82.4 |
MS.gene026420.t1 | AT3G04450 | 63.636 | 55 | 20 | 0 | 20 | 74 | 240 | 294 | 5.39e-18 | 81.3 |
MS.gene026420.t1 | AT3G04450 | 63.636 | 55 | 20 | 0 | 20 | 74 | 240 | 294 | 5.74e-18 | 82.4 |
MS.gene026420.t1 | AT5G29000 | 63.636 | 55 | 20 | 0 | 20 | 74 | 190 | 244 | 5.91e-18 | 82.0 |
MS.gene026420.t1 | AT5G29000 | 63.636 | 55 | 20 | 0 | 20 | 74 | 190 | 244 | 5.91e-18 | 82.0 |
MS.gene026420.t1 | AT5G29000 | 63.636 | 55 | 20 | 0 | 20 | 74 | 233 | 287 | 7.90e-18 | 81.6 |
MS.gene026420.t1 | AT5G29000 | 63.636 | 55 | 20 | 0 | 20 | 74 | 233 | 287 | 8.13e-18 | 80.9 |
MS.gene026420.t1 | AT4G13640 | 37.255 | 153 | 89 | 4 | 19 | 170 | 38 | 184 | 1.19e-17 | 80.1 |
MS.gene026420.t1 | AT2G06020 | 43.478 | 92 | 46 | 2 | 13 | 98 | 81 | 172 | 1.58e-16 | 77.0 |
MS.gene026420.t1 | AT2G20400 | 63.636 | 55 | 20 | 0 | 20 | 74 | 233 | 287 | 1.94e-16 | 77.8 |
MS.gene026420.t1 | AT3G24120 | 38.400 | 125 | 74 | 2 | 19 | 142 | 42 | 164 | 2.04e-16 | 76.6 |
MS.gene026420.t1 | AT2G20400 | 63.636 | 55 | 20 | 0 | 20 | 74 | 233 | 287 | 2.09e-16 | 77.8 |
MS.gene026420.t1 | AT4G13640 | 59.677 | 62 | 24 | 1 | 19 | 80 | 38 | 98 | 2.32e-16 | 76.6 |
MS.gene026420.t1 | AT3G13040 | 67.308 | 52 | 17 | 0 | 20 | 71 | 243 | 294 | 3.76e-16 | 77.0 |
MS.gene026420.t1 | AT3G13040 | 67.308 | 52 | 17 | 0 | 20 | 71 | 243 | 294 | 3.76e-16 | 77.0 |
MS.gene026420.t1 | AT3G13040 | 67.308 | 52 | 17 | 0 | 20 | 71 | 243 | 294 | 3.76e-16 | 77.0 |
MS.gene026420.t1 | AT5G18240 | 49.296 | 71 | 33 | 1 | 19 | 86 | 46 | 116 | 4.55e-16 | 76.6 |
MS.gene026420.t1 | AT5G18240 | 49.296 | 71 | 33 | 1 | 19 | 86 | 46 | 116 | 4.55e-16 | 76.6 |
MS.gene026420.t1 | AT5G18240 | 49.296 | 71 | 33 | 1 | 19 | 86 | 46 | 116 | 4.66e-16 | 76.6 |
MS.gene026420.t1 | AT5G18240 | 49.296 | 71 | 33 | 1 | 19 | 86 | 46 | 116 | 4.74e-16 | 76.6 |
MS.gene026420.t1 | AT5G18240 | 49.296 | 71 | 33 | 1 | 19 | 86 | 46 | 116 | 4.74e-16 | 76.6 |
MS.gene026420.t1 | AT3G12730 | 62.264 | 53 | 20 | 0 | 19 | 71 | 24 | 76 | 4.85e-16 | 74.7 |
MS.gene026420.t1 | AT3G04030 | 56.604 | 53 | 23 | 0 | 19 | 71 | 46 | 98 | 1.01e-15 | 75.5 |
MS.gene026420.t1 | AT3G04030 | 56.604 | 53 | 23 | 0 | 19 | 71 | 46 | 98 | 1.13e-15 | 75.5 |
MS.gene026420.t1 | AT3G24120 | 60.714 | 56 | 22 | 0 | 19 | 74 | 42 | 97 | 1.67e-15 | 74.3 |
MS.gene026420.t1 | AT1G79430 | 62.264 | 53 | 20 | 0 | 19 | 71 | 35 | 87 | 1.99e-15 | 74.7 |
MS.gene026420.t1 | AT2G01060 | 67.308 | 52 | 17 | 0 | 20 | 71 | 17 | 68 | 2.82e-15 | 73.6 |
MS.gene026420.t1 | AT1G69580 | 40.698 | 86 | 48 | 1 | 19 | 101 | 35 | 120 | 1.48e-14 | 72.0 |
MS.gene026420.t1 | AT1G69580 | 40.698 | 86 | 48 | 1 | 19 | 101 | 35 | 120 | 1.62e-14 | 72.0 |
MS.gene026420.t1 | AT5G06800 | 61.538 | 52 | 20 | 0 | 20 | 71 | 194 | 245 | 8.12e-14 | 69.3 |
MS.gene026420.t1 | AT5G06800 | 61.538 | 52 | 20 | 0 | 20 | 71 | 194 | 245 | 1.33e-13 | 69.7 |
MS.gene026420.t1 | AT5G06800 | 61.538 | 52 | 20 | 0 | 20 | 71 | 194 | 245 | 1.33e-13 | 69.3 |
MS.gene026420.t1 | AT3G04030 | 52.830 | 53 | 24 | 1 | 19 | 71 | 46 | 97 | 6.50e-13 | 67.4 |
MS.gene026420.t1 | AT2G03500 | 61.224 | 49 | 19 | 0 | 23 | 71 | 238 | 286 | 1.93e-12 | 66.2 |
MS.gene026420.t1 | AT4G37180 | 55.932 | 59 | 26 | 0 | 13 | 71 | 205 | 263 | 2.21e-12 | 65.9 |
MS.gene026420.t1 | AT4G37180 | 55.932 | 59 | 26 | 0 | 13 | 71 | 212 | 270 | 2.76e-12 | 65.5 |
MS.gene026420.t1 | AT5G44190 | 56.897 | 58 | 24 | 1 | 17 | 74 | 146 | 202 | 3.33e-12 | 65.5 |
MS.gene026420.t1 | AT5G44190 | 56.897 | 58 | 24 | 1 | 17 | 74 | 146 | 202 | 4.41e-12 | 65.1 |
MS.gene026420.t1 | AT1G25550 | 59.184 | 49 | 20 | 0 | 23 | 71 | 214 | 262 | 4.75e-12 | 64.7 |
MS.gene026420.t1 | AT5G59570 | 55.357 | 56 | 24 | 1 | 16 | 71 | 139 | 193 | 5.26e-12 | 64.3 |
MS.gene026420.t1 | AT5G59570 | 55.357 | 56 | 24 | 1 | 16 | 71 | 139 | 193 | 5.26e-12 | 64.3 |
MS.gene026420.t1 | AT3G62670 | 46.269 | 67 | 32 | 1 | 16 | 78 | 209 | 275 | 6.20e-12 | 64.7 |
MS.gene026420.t1 | AT3G46640 | 54.545 | 55 | 24 | 1 | 17 | 71 | 143 | 196 | 2.25e-11 | 62.8 |
MS.gene026420.t1 | AT3G46640 | 54.545 | 55 | 24 | 1 | 17 | 71 | 143 | 196 | 2.25e-11 | 62.8 |
MS.gene026420.t1 | AT3G10760 | 56.364 | 55 | 23 | 1 | 17 | 71 | 104 | 157 | 2.43e-11 | 62.8 |
MS.gene026420.t1 | AT5G05090 | 56.364 | 55 | 23 | 1 | 17 | 71 | 80 | 133 | 2.87e-11 | 62.0 |
MS.gene026420.t1 | AT3G46640 | 54.545 | 55 | 24 | 1 | 17 | 71 | 143 | 196 | 3.13e-11 | 62.4 |
MS.gene026420.t1 | AT4G37180 | 54.386 | 57 | 26 | 0 | 13 | 69 | 205 | 261 | 4.87e-11 | 61.6 |
MS.gene026420.t1 | AT1G25550 | 55.102 | 49 | 22 | 0 | 23 | 71 | 214 | 262 | 7.25e-11 | 60.8 |
MS.gene026420.t1 | AT2G40970 | 56.364 | 55 | 23 | 1 | 17 | 71 | 104 | 157 | 8.70e-11 | 60.5 |
Find 41 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCAGTTGATGGATGTTAA+AGG | 0.259007 | 1.4:+19734812 | MS.gene026420:CDS |
TAAGCTTGTTCTTCAGTTGA+TGG | 0.287799 | 1.4:+19734802 | MS.gene026420:CDS |
GAACAAATCAGTTTCTTGTT+TGG | 0.311474 | 1.4:-19736387 | None:intergenic |
AACAAATCAGTTTCTTGTTT+GGG | 0.342359 | 1.4:-19736386 | None:intergenic |
ACAGAAATTTCTCCCCAAAA+AGG | 0.367281 | 1.4:+19735565 | MS.gene026420:CDS |
ACATGTTAAGAGCCATTTGC+AGG | 0.373744 | 1.4:+19734847 | MS.gene026420:CDS |
GTTTATGCCATTGAAACTCT+TGG | 0.378805 | 1.4:+19734637 | MS.gene026420:CDS |
ATATTCTTTCTCTGCATTCA+AGG | 0.392029 | 1.4:-19736214 | None:intergenic |
GCAACAGCAGAAGGGAATAA+AGG | 0.396273 | 1.4:+19736295 | MS.gene026420:CDS |
TTTGTTGTGTTGGTTCAATA+TGG | 0.396998 | 1.4:+19736321 | MS.gene026420:CDS |
TTCAGTTGATGGATGTTAAA+GGG | 0.399431 | 1.4:+19734813 | MS.gene026420:CDS |
ACAAAGCAACGATGAAGTTC+AGG | 0.401903 | 1.4:-19734616 | None:intergenic |
TTTAGAGATCATGAATCTCT+TGG | 0.412921 | 1.4:+19735516 | MS.gene026420:CDS |
TTTGTTTAAACCAGATGTAT+AGG | 0.415716 | 1.4:+19734954 | MS.gene026420:intron |
CAAAGGTTCCTCGTTTAAGA+TGG | 0.432536 | 1.4:+19734590 | MS.gene026420:CDS |
ATGACCACCAAGAGTTTCAA+TGG | 0.434104 | 1.4:-19734644 | None:intergenic |
ACAAGAAACTGATTTGTTCC+AGG | 0.436372 | 1.4:+19736391 | MS.gene026420:CDS |
GGAAAGATTGTGAAATATTG+AGG | 0.465565 | 1.4:-19736356 | None:intergenic |
GAGAAGAGAAATTCCCTCTC+AGG | 0.479292 | 1.4:+19736188 | MS.gene026420:CDS |
TTCTGGAGCATGATGATGAT+GGG | 0.488907 | 1.4:+19735493 | MS.gene026420:CDS |
TATCAAAATCAACCTGCAAA+TGG | 0.495949 | 1.4:-19734859 | None:intergenic |
GTTTCTTGTTTGGGTAGCAC+AGG | 0.498612 | 1.4:-19736377 | None:intergenic |
ATAAAGGAGATTTGTTGTGT+TGG | 0.503985 | 1.4:+19736311 | MS.gene026420:CDS |
ATCAACTGAAGAACAAGCTT+AGG | 0.508937 | 1.4:-19734800 | None:intergenic |
ATTGTGAAATATTGAGGTTG+AGG | 0.511226 | 1.4:-19736350 | None:intergenic |
TTTCTGGAGCATGATGATGA+TGG | 0.516346 | 1.4:+19735492 | MS.gene026420:CDS |
CATGGTTCAGCAACAGCAGA+AGG | 0.534523 | 1.4:+19736286 | MS.gene026420:CDS |
CAGAAGATGAAGAAGATACA+AGG | 0.540102 | 1.4:+19738035 | MS.gene026420:CDS |
ATGAGTAGTTGTGGAAGGGA+AGG | 0.542254 | 1.4:+19734544 | MS.gene026420:CDS |
TTATGATTATGTGCAGGACA+TGG | 0.561583 | 1.4:+19736268 | MS.gene026420:CDS |
AGATCATGAATCTCTTGGAA+TGG | 0.569091 | 1.4:+19735521 | MS.gene026420:CDS |
GCATTCAAGGATTCCTGAGA+GGG | 0.578921 | 1.4:-19736201 | None:intergenic |
GAGACAATATGTAAGATCAA+AGG | 0.602756 | 1.4:+19734573 | MS.gene026420:CDS |
AGAGGTGACTCATGCAAACA+AGG | 0.619444 | 1.4:+19734983 | MS.gene026420:CDS |
TATGCCATTGAAACTCTTGG+TGG | 0.619663 | 1.4:+19734640 | MS.gene026420:CDS |
CAGATGTATAGGAGTATGAG+AGG | 0.628713 | 1.4:+19734965 | MS.gene026420:intron |
TGCATTCAAGGATTCCTGAG+AGG | 0.645375 | 1.4:-19736202 | None:intergenic |
ATGGTTCAGCAACAGCAGAA+GGG | 0.660060 | 1.4:+19736287 | MS.gene026420:CDS |
AGAAGATGAAGAAGATACAA+GGG | 0.682426 | 1.4:+19738036 | MS.gene026420:CDS |
GAAGATGAAGAAGATACAAG+GGG | 0.705761 | 1.4:+19738037 | MS.gene026420:CDS |
TCAGGTGTCCATCTTAAACG+AGG | 0.752182 | 1.4:-19734598 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATAATTTGATTAACATT+TGG | + | chr1.4:19736135-19736154 | MS.gene026420:intron | 10.0% |
!! | ATTAAGATTATATAGTATAT+CGG | + | chr1.4:19735752-19735771 | MS.gene026420:intron | 10.0% |
!! | GAAAATTATAATATAAATGA+TGG | - | chr1.4:19735233-19735252 | None:intergenic | 10.0% |
!!! | ATTATTTTTAAACCATAAAA+TGG | - | chr1.4:19736118-19736137 | None:intergenic | 10.0% |
!!! | TTTTGTTTTGTTAATTTATT+AGG | + | chr1.4:19734921-19734940 | MS.gene026420:intron | 10.0% |
!! | AAAATCAATCATATCTTAAT+TGG | - | chr1.4:19736547-19736566 | None:intergenic | 15.0% |
!! | ATAAAATGGAAAAGTAAAAA+TGG | - | chr1.4:19736104-19736123 | None:intergenic | 15.0% |
!! | ATTCAATAATAGATGTATAT+TGG | + | chr1.4:19737582-19737601 | MS.gene026420:intron | 15.0% |
!! | GATATACTATATAATCTTAA+TGG | - | chr1.4:19735753-19735772 | None:intergenic | 15.0% |
!!! | AAAAGATTGTTTTTTATGTA+CGG | - | chr1.4:19735475-19735494 | None:intergenic | 15.0% |
!!! | AAGTCTCAATTTTAATAATT+TGG | - | chr1.4:19737246-19737265 | None:intergenic | 15.0% |
!!! | AATAATTTCAAACTTTTCAA+AGG | + | chr1.4:19735616-19735635 | MS.gene026420:intron | 15.0% |
!!! | AATATTAAAGCTTTATACTA+AGG | - | chr1.4:19735030-19735049 | None:intergenic | 15.0% |
!!! | AGTTAACAAAACAATTTTTT+AGG | + | chr1.4:19736035-19736054 | MS.gene026420:intron | 15.0% |
!!! | ATCATAAGAAGATTTTAAAA+AGG | - | chr1.4:19735295-19735314 | None:intergenic | 15.0% |
!!! | ATTTTCTACGATATTAAAAA+TGG | - | chr1.4:19735883-19735902 | None:intergenic | 15.0% |
!!! | ATTTTTACTTTTCCATTTTA+TGG | + | chr1.4:19736103-19736122 | MS.gene026420:intron | 15.0% |
!!! | TGACTTTAAAAATAGTTTTT+AGG | + | chr1.4:19736671-19736690 | MS.gene026420:intron | 15.0% |
!!! | TTCAATTTCAATATTTTAGA+AGG | - | chr1.4:19737285-19737304 | None:intergenic | 15.0% |
!! | AAAATTATATCCACTTTGAA+AGG | - | chr1.4:19737063-19737082 | None:intergenic | 20.0% |
!! | AATCATATCTTAATTGGAAA+AGG | - | chr1.4:19736541-19736560 | None:intergenic | 20.0% |
!! | ACATATTAAGGAAATTAGAT+TGG | - | chr1.4:19735421-19735440 | None:intergenic | 20.0% |
!! | ATATAAACCAACACATATTA+AGG | - | chr1.4:19735433-19735452 | None:intergenic | 20.0% |
!! | GAATTTATTGAAAAACTTGA+TGG | + | chr1.4:19736006-19736025 | MS.gene026420:intron | 20.0% |
!! | TAAAAAGTAGTGTATGTATT+TGG | - | chr1.4:19736251-19736270 | None:intergenic | 20.0% |
!! | TAAAGAAGAAAATAAAGCTA+TGG | - | chr1.4:19735594-19735613 | None:intergenic | 20.0% |
!! | TAACCAAAGTTATATATGTT+TGG | - | chr1.4:19736577-19736596 | None:intergenic | 20.0% |
!! | TTATAACATGTTCACTATTA+CGG | + | chr1.4:19735902-19735921 | MS.gene026420:intron | 20.0% |
!!! | AAAGTGGATATAATTTTTTG+GGG | + | chr1.4:19737066-19737085 | MS.gene026420:intron | 20.0% |
!!! | ACACAAAATAAAAAAGCATA+GGG | - | chr1.4:19736965-19736984 | None:intergenic | 20.0% |
!!! | ACATAAAAAACAATCTTTTC+TGG | + | chr1.4:19735476-19735495 | MS.gene026420:CDS | 20.0% |
!!! | ATATTTCTTTTCATTTGTAG+AGG | + | chr1.4:19734772-19734791 | MS.gene026420:intron | 20.0% |
!!! | ATGCTTTTTTTCATTTAACT+TGG | - | chr1.4:19737981-19738000 | None:intergenic | 20.0% |
!!! | ATTTTTTAGGAAAAAGTGTT+TGG | + | chr1.4:19736048-19736067 | MS.gene026420:intron | 20.0% |
!!! | CAAAGTGGATATAATTTTTT+GGG | + | chr1.4:19737065-19737084 | MS.gene026420:intron | 20.0% |
!!! | CTCAATTTTAATAATTTGGT+AGG | - | chr1.4:19737242-19737261 | None:intergenic | 20.0% |
!!! | TACACAAAATAAAAAAGCAT+AGG | - | chr1.4:19736966-19736985 | None:intergenic | 20.0% |
!!! | TCAAAGTGGATATAATTTTT+TGG | + | chr1.4:19737064-19737083 | MS.gene026420:intron | 20.0% |
! | ACATTGTAATAGAAGTGAAT+AGG | - | chr1.4:19737627-19737646 | None:intergenic | 25.0% |
! | AGTCCAAACATATATAACTT+TGG | + | chr1.4:19736571-19736590 | MS.gene026420:intron | 25.0% |
! | ATAATCTCATTCAAAGATTG+TGG | + | chr1.4:19736898-19736917 | MS.gene026420:intron | 25.0% |
! | ATATTGGAAATTCTCTTCTT+CGG | + | chr1.4:19737598-19737617 | MS.gene026420:intron | 25.0% |
! | ATTGAAATTGAGAGTTTATG+TGG | + | chr1.4:19737321-19737340 | MS.gene026420:intron | 25.0% |
! | CTAATTTCCTTAATATGTGT+TGG | + | chr1.4:19735423-19735442 | MS.gene026420:intron | 25.0% |
! | CTACCTTAACTAAAATGAAA+AGG | + | chr1.4:19737423-19737442 | MS.gene026420:intron | 25.0% |
! | TAAAGTAATAATAGTAGCAC+AGG | - | chr1.4:19736454-19736473 | None:intergenic | 25.0% |
! | TAACATTGTGACAATGAAAT+GGG | - | chr1.4:19736994-19737013 | None:intergenic | 25.0% |
! | TAATCTCATTCAAAGATTGT+GGG | + | chr1.4:19736899-19736918 | MS.gene026420:intron | 25.0% |
! | TGTTTCAAATAGCATTAACA+AGG | - | chr1.4:19735390-19735409 | None:intergenic | 25.0% |
! | TTGGTTTATATTTGACAGAT+AGG | + | chr1.4:19735442-19735461 | MS.gene026420:intron | 25.0% |
! | TTTCCATCTCAAAATTAATG+TGG | - | chr1.4:19737887-19737906 | None:intergenic | 25.0% |
! | TTTGACATAAATGCAACAAA+AGG | - | chr1.4:19737374-19737393 | None:intergenic | 25.0% |
! | TTTGTTTAAACCAGATGTAT+AGG | + | chr1.4:19734954-19734973 | MS.gene026420:intron | 25.0% |
!! | AAAAAGCATGTGAATGAAAT+TGG | + | chr1.4:19737992-19738011 | MS.gene026420:CDS | 25.0% |
!! | AACAAATCAGTTTCTTGTTT+GGG | - | chr1.4:19736389-19736408 | None:intergenic | 25.0% |
!! | ATGTGAATAGAGTTGTTATT+AGG | + | chr1.4:19737132-19737151 | MS.gene026420:intron | 25.0% |
!! | CTTTTATAACATCTTTTTGC+AGG | + | chr1.4:19737952-19737971 | MS.gene026420:intron | 25.0% |
!! | TGTGAATAGAGTTGTTATTA+GGG | + | chr1.4:19737133-19737152 | MS.gene026420:intron | 25.0% |
!! | TTAAAGCTTTATACTAAGGA+AGG | - | chr1.4:19735026-19735045 | None:intergenic | 25.0% |
!!! | AAACCACATTAATTTTGAGA+TGG | + | chr1.4:19737881-19737900 | MS.gene026420:intron | 25.0% |
!!! | GACAAGGATATTTTGAAAAA+AGG | - | chr1.4:19737915-19737934 | None:intergenic | 25.0% |
!!! | TACTTTACTACTTGCTTTTT+GGG | + | chr1.4:19736467-19736486 | MS.gene026420:intron | 25.0% |
!!! | TACTTTTTATGATTATGTGC+AGG | + | chr1.4:19736262-19736281 | MS.gene026420:CDS | 25.0% |
!!! | TGTCCTTTTCATTTTAGTTA+AGG | - | chr1.4:19737429-19737448 | None:intergenic | 25.0% |
!!! | TTACTTTACTACTTGCTTTT+TGG | + | chr1.4:19736466-19736485 | MS.gene026420:intron | 25.0% |
AATCTCATTCAAAGATTGTG+GGG | + | chr1.4:19736900-19736919 | MS.gene026420:intron | 30.0% | |
AGAAGATGAAGAAGATACAA+GGG | + | chr1.4:19738036-19738055 | MS.gene026420:CDS | 30.0% | |
ATAGAGATAAGAAAGTGACA+AGG | - | chr1.4:19737931-19737950 | None:intergenic | 30.0% | |
ATATTCTTTCTCTGCATTCA+AGG | - | chr1.4:19736217-19736236 | None:intergenic | 30.0% | |
ATCAAGAAAATCACCAACAA+GGG | - | chr1.4:19737094-19737113 | None:intergenic | 30.0% | |
ATTGTGAAATATTGAGGTTG+AGG | - | chr1.4:19736353-19736372 | None:intergenic | 30.0% | |
CTAATCATTTCTACATTCAG+TGG | + | chr1.4:19737215-19737234 | MS.gene026420:intron | 30.0% | |
GAAAACTACATTAGTGATTG+CGG | - | chr1.4:19735842-19735861 | None:intergenic | 30.0% | |
GAACAAATCAGTTTCTTGTT+TGG | - | chr1.4:19736390-19736409 | None:intergenic | 30.0% | |
GAGACAATATGTAAGATCAA+AGG | + | chr1.4:19734573-19734592 | MS.gene026420:CDS | 30.0% | |
GGAAAGATTGTGAAATATTG+AGG | - | chr1.4:19736359-19736378 | None:intergenic | 30.0% | |
GTAACATTGTGACAATGAAA+TGG | - | chr1.4:19736995-19737014 | None:intergenic | 30.0% | |
TATCAAAATCAACCTGCAAA+TGG | - | chr1.4:19734862-19734881 | None:intergenic | 30.0% | |
TATCAAGAAAATCACCAACA+AGG | - | chr1.4:19737095-19737114 | None:intergenic | 30.0% | |
TTTAGAGATCATGAATCTCT+TGG | + | chr1.4:19735516-19735535 | MS.gene026420:CDS | 30.0% | |
! | AGATTTTCCAAATTTGTGCA+TGG | - | chr1.4:19735198-19735217 | None:intergenic | 30.0% |
! | CTTTTCAAAGGACTTAAAAG+TGG | + | chr1.4:19735628-19735647 | MS.gene026420:intron | 30.0% |
! | TTGGACTTTTGCTTGATTTT+AGG | + | chr1.4:19736067-19736086 | MS.gene026420:intron | 30.0% |
! | TTTTGTATGGAATAAGTACC+TGG | - | chr1.4:19736412-19736431 | None:intergenic | 30.0% |
!! | AAGCATGGATTGATTTTGTA+TGG | - | chr1.4:19736425-19736444 | None:intergenic | 30.0% |
!! | ATAAAGGAGATTTGTTGTGT+TGG | + | chr1.4:19736311-19736330 | MS.gene026420:CDS | 30.0% |
!! | CTACAGTCTTATTAGTGAAA+AGG | - | chr1.4:19737401-19737420 | None:intergenic | 30.0% |
!! | GTGGTTTAAGATTTTTCACA+TGG | - | chr1.4:19737868-19737887 | None:intergenic | 30.0% |
!! | TTCAGTTGATGGATGTTAAA+GGG | + | chr1.4:19734813-19734832 | MS.gene026420:CDS | 30.0% |
!! | TTTGTTGTGTTGGTTCAATA+TGG | + | chr1.4:19736321-19736340 | MS.gene026420:CDS | 30.0% |
ACACAATACAAGTACTACAC+CGG | - | chr1.4:19735681-19735700 | None:intergenic | 35.0% | |
ACAGAAATTTCTCCCCAAAA+AGG | + | chr1.4:19735565-19735584 | MS.gene026420:CDS | 35.0% | |
AGATCATGAATCTCTTGGAA+TGG | + | chr1.4:19735521-19735540 | MS.gene026420:CDS | 35.0% | |
AGGACTTAAAAGTGGTATAG+TGG | + | chr1.4:19735636-19735655 | MS.gene026420:intron | 35.0% | |
AGTTTATGTGGCATGTCTAA+TGG | + | chr1.4:19737333-19737352 | MS.gene026420:intron | 35.0% | |
ATCAACTGAAGAACAAGCTT+AGG | - | chr1.4:19734803-19734822 | None:intergenic | 35.0% | |
ATCTCATTCAAAGATTGTGG+GGG | + | chr1.4:19736901-19736920 | MS.gene026420:intron | 35.0% | |
ATGCTTTATGCATTGAAGCT+AGG | + | chr1.4:19735119-19735138 | MS.gene026420:intron | 35.0% | |
CAGAAGATGAAGAAGATACA+AGG | + | chr1.4:19738035-19738054 | MS.gene026420:CDS | 35.0% | |
CTAGTTTCCATGCACAAATT+TGG | + | chr1.4:19735188-19735207 | MS.gene026420:intron | 35.0% | |
GAAAAGGAAAATCTCCACTA+TGG | - | chr1.4:19736525-19736544 | None:intergenic | 35.0% | |
GAAGATGAAGAAGATACAAG+GGG | + | chr1.4:19738037-19738056 | MS.gene026420:CDS | 35.0% | |
GACTTAAAAGTGGTATAGTG+GGG | + | chr1.4:19735638-19735657 | MS.gene026420:intron | 35.0% | |
GGACTTAAAAGTGGTATAGT+GGG | + | chr1.4:19735637-19735656 | MS.gene026420:intron | 35.0% | |
GGCATGTCTAATGGAAAATT+CGG | + | chr1.4:19737342-19737361 | MS.gene026420:intron | 35.0% | |
GTAGATTTCACCTTTCAAAG+TGG | + | chr1.4:19737050-19737069 | MS.gene026420:intron | 35.0% | |
GTGTATGTTTGATATCAGAG+TGG | - | chr1.4:19735952-19735971 | None:intergenic | 35.0% | |
GTTTATGCCATTGAAACTCT+TGG | + | chr1.4:19734637-19734656 | MS.gene026420:CDS | 35.0% | |
TAACATGTTCACTATTACGG+TGG | + | chr1.4:19735905-19735924 | MS.gene026420:intron | 35.0% | |
TACAACGTAACGAATCGAAT+AGG | + | chr1.4:19737678-19737697 | MS.gene026420:intron | 35.0% | |
TCAAGAAAATCACCAACAAG+GGG | - | chr1.4:19737093-19737112 | None:intergenic | 35.0% | |
TGTTGTTATGACATTAGTCG+CGG | + | chr1.4:19735981-19736000 | MS.gene026420:intron | 35.0% | |
TTAATTGTCTTTCCCTTCCT+TGG | + | chr1.4:19737529-19737548 | MS.gene026420:intron | 35.0% | |
TTATGATTATGTGCAGGACA+TGG | + | chr1.4:19736268-19736287 | MS.gene026420:CDS | 35.0% | |
TTGTGACAATGAAATGGGAA+AGG | - | chr1.4:19736989-19737008 | None:intergenic | 35.0% | |
TTTGATATCAGAGTGGTTCA+TGG | - | chr1.4:19735945-19735964 | None:intergenic | 35.0% | |
! | AAAGCTATGGTGACCTTTTT+GGG | - | chr1.4:19735581-19735600 | None:intergenic | 35.0% |
! | TAAAGCTATGGTGACCTTTT+TGG | - | chr1.4:19735582-19735601 | None:intergenic | 35.0% |
! | TAAGCTTGTTCTTCAGTTGA+TGG | + | chr1.4:19734802-19734821 | MS.gene026420:CDS | 35.0% |
! | TGTCTGATAGCGTATCAAAT+AGG | + | chr1.4:19737734-19737753 | MS.gene026420:intron | 35.0% |
! | TTTTGTCACAATGCAACTCA+TGG | - | chr1.4:19737166-19737185 | None:intergenic | 35.0% |
!! | ACAAGAAACTGATTTGTTCC+AGG | + | chr1.4:19736391-19736410 | MS.gene026420:CDS | 35.0% |
!! | ATTTCTAAAGCAACCAAGGA+AGG | - | chr1.4:19737545-19737564 | None:intergenic | 35.0% |
!! | CTTCAGTTGATGGATGTTAA+AGG | + | chr1.4:19734812-19734831 | MS.gene026420:CDS | 35.0% |
!! | GATGATTTCTAAAGCAACCA+AGG | - | chr1.4:19737549-19737568 | None:intergenic | 35.0% |
!! | GCTTTATTTCACTACCATAG+TGG | + | chr1.4:19736508-19736527 | MS.gene026420:intron | 35.0% |
!! | TTTCTAAAGCAACCAAGGAA+GGG | - | chr1.4:19737544-19737563 | None:intergenic | 35.0% |
!!! | TACTACTTGCTTTTTGGGTA+GGG | + | chr1.4:19736472-19736491 | MS.gene026420:intron | 35.0% |
!!! | TTACTACTTGCTTTTTGGGT+AGG | + | chr1.4:19736471-19736490 | MS.gene026420:intron | 35.0% |
AACTGAGGTCTGAATGATGA+TGG | - | chr1.4:19736937-19736956 | None:intergenic | 40.0% | |
AAGGAAGGTGAGACATTGTT+AGG | - | chr1.4:19735011-19735030 | None:intergenic | 40.0% | |
ACAAAGCAACGATGAAGTTC+AGG | - | chr1.4:19734619-19734638 | None:intergenic | 40.0% | |
ACATGTTAAGAGCCATTTGC+AGG | + | chr1.4:19734847-19734866 | MS.gene026420:CDS | 40.0% | |
ATGACCACCAAGAGTTTCAA+TGG | - | chr1.4:19734647-19734666 | None:intergenic | 40.0% | |
ATTAACTCAATCCTCACCAG+AGG | + | chr1.4:19737757-19737776 | MS.gene026420:intron | 40.0% | |
CAAAGGTTCCTCGTTTAAGA+TGG | + | chr1.4:19734590-19734609 | MS.gene026420:CDS | 40.0% | |
CACAATACAAGTACTACACC+GGG | - | chr1.4:19735680-19735699 | None:intergenic | 40.0% | |
CAGAGGGAACTTATGAGAAA+AGG | + | chr1.4:19737774-19737793 | MS.gene026420:intron | 40.0% | |
CTCTCATACTCCTATACATC+TGG | - | chr1.4:19734967-19734986 | None:intergenic | 40.0% | |
GTCTAATGGAAAATTCGGAG+TGG | + | chr1.4:19737347-19737366 | MS.gene026420:intron | 40.0% | |
GTGCATGGAAACTAGATCAT+AGG | - | chr1.4:19735183-19735202 | None:intergenic | 40.0% | |
TATGCCATTGAAACTCTTGG+TGG | + | chr1.4:19734640-19734659 | MS.gene026420:CDS | 40.0% | |
TCACTGAAGTCTAACGTAAG+TGG | - | chr1.4:19736768-19736787 | None:intergenic | 40.0% | |
TTAACTCAATCCTCACCAGA+GGG | + | chr1.4:19737758-19737777 | MS.gene026420:intron | 40.0% | |
! | AAGCTATGGTGACCTTTTTG+GGG | - | chr1.4:19735580-19735599 | None:intergenic | 40.0% |
! | CAGATGTATAGGAGTATGAG+AGG | + | chr1.4:19734965-19734984 | MS.gene026420:intron | 40.0% |
! | CTTTTCTCATAAGTTCCCTC+TGG | - | chr1.4:19737776-19737795 | None:intergenic | 40.0% |
! | TGCGTCTTACATGACTTTTG+TGG | + | chr1.4:19735144-19735163 | MS.gene026420:intron | 40.0% |
!! | CTAATATGACTAGCTTCGTG+TGG | - | chr1.4:19735722-19735741 | None:intergenic | 40.0% |
!! | TTCTGGAGCATGATGATGAT+GGG | + | chr1.4:19735493-19735512 | MS.gene026420:CDS | 40.0% |
!! | TTTCTGGAGCATGATGATGA+TGG | + | chr1.4:19735492-19735511 | MS.gene026420:CDS | 40.0% |
AGAGGTGACTCATGCAAACA+AGG | + | chr1.4:19734983-19735002 | MS.gene026420:CDS | 45.0% | |
ATGAGTAGTTGTGGAAGGGA+AGG | + | chr1.4:19734544-19734563 | MS.gene026420:CDS | 45.0% | |
ATGGTTCAGCAACAGCAGAA+GGG | + | chr1.4:19736287-19736306 | MS.gene026420:CDS | 45.0% | |
GAGAAGAGAAATTCCCTCTC+AGG | + | chr1.4:19736188-19736207 | MS.gene026420:CDS | 45.0% | |
GCAACAGCAGAAGGGAATAA+AGG | + | chr1.4:19736295-19736314 | MS.gene026420:CDS | 45.0% | |
GCATTCAAGGATTCCTGAGA+GGG | - | chr1.4:19736204-19736223 | None:intergenic | 45.0% | |
TAGCACAGGACAAGAAAGCA+TGG | - | chr1.4:19736440-19736459 | None:intergenic | 45.0% | |
TCAGGTGTCCATCTTAAACG+AGG | - | chr1.4:19734601-19734620 | None:intergenic | 45.0% | |
TGAGACTTTCTCACGTTCAG+TGG | + | chr1.4:19737258-19737277 | MS.gene026420:intron | 45.0% | |
TGCATTCAAGGATTCCTGAG+AGG | - | chr1.4:19736205-19736224 | None:intergenic | 45.0% | |
! | AAAAGTGGTATAGTGGGGCA+TGG | + | chr1.4:19735643-19735662 | MS.gene026420:intron | 45.0% |
! | AAGCATAGGGCATCAAACTG+AGG | - | chr1.4:19736952-19736971 | None:intergenic | 45.0% |
! | GGCATGGTTTAAAATCGTCC+CGG | + | chr1.4:19735659-19735678 | MS.gene026420:intron | 45.0% |
! | GTTTCTTGTTTGGGTAGCAC+AGG | - | chr1.4:19736380-19736399 | None:intergenic | 45.0% |
! | TGGGTAGGGTGTTAGGTTAT+GGG | + | chr1.4:19736486-19736505 | MS.gene026420:intron | 45.0% |
! | TTGGGTAGGGTGTTAGGTTA+TGG | + | chr1.4:19736485-19736504 | MS.gene026420:intron | 45.0% |
!!! | ATTTTTTGGGGTCCCCTTGT+TGG | + | chr1.4:19737078-19737097 | MS.gene026420:intron | 45.0% |
!!! | TGCTTTTTGGGTAGGGTGTT+AGG | + | chr1.4:19736479-19736498 | MS.gene026420:intron | 45.0% |
!! | TTATATATAAAAAAAGAATT+AGG | + | chr1.4:19736635-19736654 | MS.gene026420:intron | 5.0% |
CATGGTTCAGCAACAGCAGA+AGG | + | chr1.4:19736286-19736305 | MS.gene026420:CDS | 50.0% | |
CTCATAAGTTCCCTCTGGTG+AGG | - | chr1.4:19737771-19737790 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 19734544 | 19738061 | 19734544 | ID=MS.gene026420 |
chr1.4 | mRNA | 19734544 | 19738061 | 19734544 | ID=MS.gene026420.t1;Parent=MS.gene026420 |
chr1.4 | exon | 19734544 | 19734670 | 19734544 | ID=MS.gene026420.t1.exon1;Parent=MS.gene026420.t1 |
chr1.4 | CDS | 19734544 | 19734670 | 19734544 | ID=cds.MS.gene026420.t1;Parent=MS.gene026420.t1 |
chr1.4 | exon | 19734792 | 19734868 | 19734792 | ID=MS.gene026420.t1.exon2;Parent=MS.gene026420.t1 |
chr1.4 | CDS | 19734792 | 19734868 | 19734792 | ID=cds.MS.gene026420.t1;Parent=MS.gene026420.t1 |
chr1.4 | exon | 19734968 | 19735004 | 19734968 | ID=MS.gene026420.t1.exon3;Parent=MS.gene026420.t1 |
chr1.4 | CDS | 19734968 | 19735004 | 19734968 | ID=cds.MS.gene026420.t1;Parent=MS.gene026420.t1 |
chr1.4 | exon | 19735460 | 19735586 | 19735460 | ID=MS.gene026420.t1.exon4;Parent=MS.gene026420.t1 |
chr1.4 | CDS | 19735460 | 19735586 | 19735460 | ID=cds.MS.gene026420.t1;Parent=MS.gene026420.t1 |
chr1.4 | exon | 19736178 | 19736412 | 19736178 | ID=MS.gene026420.t1.exon5;Parent=MS.gene026420.t1 |
chr1.4 | CDS | 19736178 | 19736412 | 19736178 | ID=cds.MS.gene026420.t1;Parent=MS.gene026420.t1 |
chr1.4 | exon | 19737974 | 19738061 | 19737974 | ID=MS.gene026420.t1.exon6;Parent=MS.gene026420.t1 |
chr1.4 | CDS | 19737974 | 19738061 | 19737974 | ID=cds.MS.gene026420.t1;Parent=MS.gene026420.t1 |
Gene Sequence |
Protein sequence |