Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026443.t1 | KEH40707.1 | 100 | 168 | 0 | 0 | 26 | 193 | 14 | 181 | 1.20E-86 | 329.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026443.t1 | Q9FNN6 | 59.1 | 176 | 60 | 4 | 26 | 193 | 127 | 298 | 2.1e-39 | 163.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026443.t1 | A0A072VFX5 | 100.0 | 168 | 0 | 0 | 26 | 193 | 14 | 181 | 8.5e-87 | 329.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026443.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026443.t1 | MTR_1g033620 | 100.000 | 168 | 0 | 0 | 26 | 193 | 14 | 181 | 1.27e-120 | 341 |
MS.gene026443.t1 | MTR_8g063600 | 62.209 | 172 | 53 | 3 | 26 | 186 | 115 | 285 | 6.22e-62 | 194 |
MS.gene026443.t1 | MTR_4g111975 | 66.917 | 133 | 36 | 4 | 26 | 151 | 147 | 278 | 2.22e-48 | 159 |
MS.gene026443.t1 | MTR_8g063870 | 46.893 | 177 | 65 | 4 | 26 | 184 | 101 | 266 | 7.67e-41 | 139 |
MS.gene026443.t1 | MTR_3g462790 | 80.000 | 65 | 13 | 0 | 26 | 90 | 156 | 220 | 3.72e-29 | 110 |
MS.gene026443.t1 | MTR_1g111830 | 74.627 | 67 | 17 | 0 | 26 | 92 | 133 | 199 | 4.18e-29 | 108 |
MS.gene026443.t1 | MTR_5g069710 | 83.333 | 60 | 10 | 0 | 26 | 85 | 141 | 200 | 1.28e-28 | 108 |
MS.gene026443.t1 | MTR_7g067080 | 77.273 | 66 | 15 | 0 | 27 | 92 | 150 | 215 | 5.68e-28 | 107 |
MS.gene026443.t1 | MTR_4g015130 | 72.881 | 59 | 16 | 0 | 27 | 85 | 3 | 61 | 5.98e-26 | 95.9 |
MS.gene026443.t1 | MTR_5g081860 | 70.588 | 68 | 18 | 1 | 27 | 92 | 135 | 202 | 4.23e-25 | 98.6 |
MS.gene026443.t1 | MTR_6g092540 | 58.140 | 86 | 29 | 2 | 27 | 112 | 107 | 185 | 3.12e-24 | 96.7 |
MS.gene026443.t1 | MTR_4g100630 | 61.538 | 65 | 25 | 0 | 26 | 90 | 104 | 168 | 2.54e-22 | 92.4 |
MS.gene026443.t1 | MTR_8g101650 | 69.643 | 56 | 16 | 1 | 26 | 81 | 114 | 168 | 1.19e-21 | 89.7 |
MS.gene026443.t1 | MTR_2g100930 | 69.643 | 56 | 17 | 0 | 26 | 81 | 118 | 173 | 2.67e-21 | 89.7 |
MS.gene026443.t1 | MTR_5g027570 | 57.353 | 68 | 27 | 1 | 26 | 91 | 101 | 168 | 3.53e-20 | 84.7 |
MS.gene026443.t1 | MTR_5g088010 | 59.091 | 66 | 23 | 2 | 26 | 88 | 69 | 133 | 3.79e-20 | 85.1 |
MS.gene026443.t1 | MTR_0036s0260 | 65.517 | 58 | 20 | 0 | 26 | 83 | 37 | 94 | 5.29e-20 | 84.0 |
MS.gene026443.t1 | MTR_5g088060 | 59.091 | 66 | 23 | 2 | 26 | 88 | 281 | 345 | 5.19e-19 | 84.3 |
MS.gene026443.t1 | MTR_5g488160 | 59.091 | 66 | 23 | 2 | 26 | 88 | 281 | 345 | 5.19e-19 | 84.3 |
MS.gene026443.t1 | MTR_2g090305 | 63.793 | 58 | 21 | 0 | 26 | 83 | 37 | 94 | 4.19e-18 | 78.6 |
MS.gene026443.t1 | MTR_5g037080 | 74.138 | 58 | 15 | 0 | 26 | 83 | 111 | 168 | 6.21e-18 | 80.1 |
MS.gene026443.t1 | MTR_3g104370 | 57.627 | 59 | 22 | 2 | 26 | 81 | 100 | 158 | 8.20e-16 | 73.2 |
MS.gene026443.t1 | MTR_4g107230 | 84.211 | 38 | 6 | 0 | 26 | 63 | 93 | 130 | 1.42e-15 | 73.2 |
MS.gene026443.t1 | MTR_5g027550 | 53.623 | 69 | 29 | 1 | 26 | 91 | 86 | 154 | 3.40e-15 | 71.6 |
MS.gene026443.t1 | MTR_1g048660 | 48.387 | 62 | 32 | 0 | 27 | 88 | 22 | 83 | 7.32e-14 | 64.7 |
MS.gene026443.t1 | MTR_1g083180 | 50.769 | 65 | 28 | 2 | 26 | 87 | 70 | 133 | 3.59e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026443.t1 | AT5G08520 | 66.484 | 182 | 37 | 5 | 26 | 193 | 127 | 298 | 3.27e-68 | 210 |
MS.gene026443.t1 | AT1G49010 | 56.716 | 134 | 53 | 2 | 26 | 154 | 143 | 276 | 1.79e-39 | 137 |
MS.gene026443.t1 | AT5G23650 | 40.099 | 202 | 75 | 4 | 27 | 182 | 130 | 331 | 4.04e-33 | 121 |
MS.gene026443.t1 | AT5G04760 | 80.000 | 60 | 12 | 0 | 26 | 85 | 108 | 167 | 3.50e-29 | 108 |
MS.gene026443.t1 | AT5G58900 | 81.667 | 60 | 11 | 0 | 26 | 85 | 150 | 209 | 7.01e-29 | 108 |
MS.gene026443.t1 | AT2G38090 | 79.661 | 59 | 12 | 0 | 27 | 85 | 151 | 209 | 3.35e-27 | 104 |
MS.gene026443.t1 | AT5G01200 | 74.576 | 59 | 15 | 0 | 27 | 85 | 156 | 214 | 2.19e-25 | 99.4 |
MS.gene026443.t1 | AT5G05790 | 70.588 | 68 | 18 | 1 | 27 | 92 | 141 | 208 | 5.72e-24 | 95.9 |
MS.gene026443.t1 | AT5G05790 | 70.588 | 68 | 18 | 1 | 27 | 92 | 141 | 208 | 5.72e-24 | 95.9 |
MS.gene026443.t1 | AT3G11280 | 76.271 | 59 | 14 | 0 | 27 | 85 | 137 | 195 | 2.12e-23 | 94.0 |
MS.gene026443.t1 | AT3G11280 | 76.271 | 59 | 14 | 0 | 27 | 85 | 137 | 195 | 2.12e-23 | 94.0 |
MS.gene026443.t1 | AT5G61620 | 58.537 | 82 | 24 | 2 | 27 | 98 | 118 | 199 | 7.10e-23 | 93.6 |
MS.gene026443.t1 | AT5G47390 | 64.062 | 64 | 23 | 0 | 26 | 89 | 105 | 168 | 2.88e-22 | 92.8 |
MS.gene026443.t1 | AT5G56840 | 51.765 | 85 | 40 | 1 | 27 | 110 | 101 | 185 | 8.50e-22 | 89.4 |
MS.gene026443.t1 | AT3G10580 | 59.701 | 67 | 25 | 1 | 26 | 92 | 104 | 168 | 6.67e-19 | 82.0 |
MS.gene026443.t1 | AT3G10580 | 59.701 | 67 | 25 | 1 | 26 | 92 | 104 | 168 | 1.15e-18 | 81.6 |
MS.gene026443.t1 | AT1G70000 | 75.439 | 57 | 14 | 0 | 26 | 82 | 107 | 163 | 1.82e-17 | 78.2 |
MS.gene026443.t1 | AT1G70000 | 75.439 | 57 | 14 | 0 | 26 | 82 | 107 | 163 | 1.82e-17 | 78.2 |
MS.gene026443.t1 | AT4G09450 | 61.404 | 57 | 22 | 0 | 26 | 82 | 100 | 156 | 2.52e-17 | 76.6 |
MS.gene026443.t1 | AT1G19000 | 55.172 | 87 | 34 | 1 | 27 | 108 | 112 | 198 | 2.38e-16 | 75.5 |
MS.gene026443.t1 | AT1G19000 | 55.172 | 87 | 34 | 1 | 27 | 108 | 112 | 198 | 2.38e-16 | 75.5 |
MS.gene026443.t1 | AT3G16350 | 82.051 | 39 | 7 | 0 | 26 | 64 | 146 | 184 | 7.52e-16 | 75.1 |
MS.gene026443.t1 | AT1G74840 | 81.579 | 38 | 7 | 0 | 26 | 63 | 105 | 142 | 7.43e-15 | 70.9 |
MS.gene026443.t1 | AT1G74840 | 81.579 | 38 | 7 | 0 | 26 | 63 | 105 | 142 | 1.11e-14 | 70.5 |
MS.gene026443.t1 | AT3G10590 | 57.895 | 57 | 23 | 1 | 26 | 82 | 120 | 175 | 1.08e-11 | 61.6 |
Find 64 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTCAACAGGTTATTTCTTC+TGG | 0.105969 | 1.1:+18547418 | MS.gene026443:intron |
TGCTACTTGTGTTGGTGTTC+GGG | 0.274482 | 1.1:-18547498 | None:intergenic |
TTCAACAGGTTATTTCTTCT+GGG | 0.318260 | 1.1:+18547419 | MS.gene026443:intron |
TTGCTACTTGTGTTGGTGTT+CGG | 0.326190 | 1.1:-18547499 | None:intergenic |
CAAGCTGTTCCATCGACAAC+TGG | 0.342730 | 1.1:+18547692 | MS.gene026443:CDS |
GCCATTATATTCGACTATAT+TGG | 0.343033 | 1.1:+18547023 | MS.gene026443:CDS |
GGTCAAACGAACGGTTCATC+TGG | 0.370497 | 1.1:+18547644 | MS.gene026443:CDS |
GCTCCTCCACACATGGCTTA+TGG | 0.382264 | 1.1:+18547809 | MS.gene026443:CDS |
GGTATTCGAGCACCAGTTCC+CGG | 0.416184 | 1.1:+18547830 | MS.gene026443:CDS |
GCCAATATAGTCGAATATAA+TGG | 0.416558 | 1.1:-18547024 | None:intergenic |
ACCGTTCGTTTGACCGGTGA+TGG | 0.418665 | 1.1:-18547636 | None:intergenic |
AGATGAACCGTTCGTTTGAC+CGG | 0.429323 | 1.1:-18547642 | None:intergenic |
CAGGTTATTTCTTCTGGGCC+TGG | 0.439867 | 1.1:+18547424 | MS.gene026443:intron |
GCATGGCTTGCTACTTGTGT+TGG | 0.451603 | 1.1:-18547506 | None:intergenic |
TTCCAGTCACTAGTTTGCTC+TGG | 0.451853 | 1.1:+18547069 | MS.gene026443:CDS |
GACACAACTGTACCGGGAAC+TGG | 0.456953 | 1.1:-18547842 | None:intergenic |
GCAGAAGTATGATGAGGCAT+AGG | 0.460682 | 1.1:-18547899 | None:intergenic |
TGAGGCATAGGGTATGTCAT+AGG | 0.463430 | 1.1:-18547887 | None:intergenic |
GGTTCATCTGGAAATTCTGC+TGG | 0.463569 | 1.1:+18547656 | MS.gene026443:CDS |
CTATCGGTTGTCCAATGGTA+GGG | 0.470550 | 1.1:-18547742 | None:intergenic |
CCATCGACAACTGGGCTACC+AGG | 0.505829 | 1.1:+18547701 | MS.gene026443:CDS |
GACCATGTTCACTGGTGCAC+CGG | 0.507025 | 1.1:-18547864 | None:intergenic |
GGCCTGGACAAGTACGGAAA+AGG | 0.510767 | 1.1:+18547440 | MS.gene026443:CDS |
GGAGGAGCGGAAAGATTCAC+AGG | 0.514662 | 1.1:-18547794 | None:intergenic |
GCACCGGACACAACTGTACC+GGG | 0.516203 | 1.1:-18547848 | None:intergenic |
CCTATCGGTTGTCCAATGGT+AGG | 0.516898 | 1.1:-18547743 | None:intergenic |
ATGTATGCTGCCCCTACCAT+TGG | 0.523237 | 1.1:+18547731 | MS.gene026443:CDS |
TCTTTCCGCTCCTCCACACA+TGG | 0.528941 | 1.1:+18547802 | MS.gene026443:CDS |
GTCATAGGGACCATGTTCAC+TGG | 0.529140 | 1.1:-18547872 | None:intergenic |
GCTTGTAATGTCATGTATGC+TGG | 0.531289 | 1.1:-18547579 | None:intergenic |
TGCACCGGACACAACTGTAC+CGG | 0.536071 | 1.1:-18547849 | None:intergenic |
ATCATACTTCTGCTCCTCAC+AGG | 0.536148 | 1.1:+18547909 | MS.gene026443:CDS |
TACCAGAGCAAACTAGTGAC+TGG | 0.541563 | 1.1:-18547071 | None:intergenic |
CCGTTCGTTTGACCGGTGAT+GGG | 0.552458 | 1.1:-18547635 | None:intergenic |
ACAACTGGGCTACCAGGTGC+AGG | 0.556843 | 1.1:+18547707 | MS.gene026443:CDS |
GAGGCATAGGGTATGTCATA+GGG | 0.567085 | 1.1:-18547886 | None:intergenic |
GGACCTTTAGTATCTGCTGT+TGG | 0.570389 | 1.1:+18547767 | MS.gene026443:CDS |
GTTCCCGGTACAGTTGTGTC+CGG | 0.571740 | 1.1:+18547845 | MS.gene026443:CDS |
GATACTAAAGGTCCTCCTAT+CGG | 0.572681 | 1.1:-18547758 | None:intergenic |
CTTCTGGGCCTGGACAAGTA+CGG | 0.573150 | 1.1:+18547434 | MS.gene026443:CDS |
TCCTCCTATCGGTTGTCCAA+TGG | 0.578098 | 1.1:-18547747 | None:intergenic |
GCAGCATACATTCCTGCACC+TGG | 0.586293 | 1.1:-18547719 | None:intergenic |
CCTGGTAGCCCAGTTGTCGA+TGG | 0.589806 | 1.1:-18547701 | None:intergenic |
CAGAAGTATGATGAGGCATA+GGG | 0.592758 | 1.1:-18547898 | None:intergenic |
TATCGGTTGTCCAATGGTAG+GGG | 0.594005 | 1.1:-18547741 | None:intergenic |
GTGCCAACAGCAGATACTAA+AGG | 0.601157 | 1.1:-18547770 | None:intergenic |
AAGCTGTTCCATCGACAACT+GGG | 0.602914 | 1.1:+18547693 | MS.gene026443:CDS |
CCCATCACCGGTCAAACGAA+CGG | 0.603823 | 1.1:+18547635 | MS.gene026443:CDS |
ACCATTGGACAACCGATAGG+AGG | 0.606609 | 1.1:+18547746 | MS.gene026443:CDS |
GTCCGGTGCACCAGTGAACA+TGG | 0.607516 | 1.1:+18547862 | MS.gene026443:CDS |
ACACCTCAAGGACCCATCAC+CGG | 0.610722 | 1.1:+18547623 | MS.gene026443:CDS |
ATAAGCCATGTGTGGAGGAG+CGG | 0.616404 | 1.1:-18547807 | None:intergenic |
CGAATACCATAAGCCATGTG+TGG | 0.628587 | 1.1:-18547815 | None:intergenic |
GGAGATGTTTCAACACCTCA+AGG | 0.628744 | 1.1:+18547611 | MS.gene026443:CDS |
CCTACCATTGGACAACCGAT+AGG | 0.635695 | 1.1:+18547743 | MS.gene026443:CDS |
ACAAGTACGGAAAAGGCGAC+TGG | 0.636078 | 1.1:+18547447 | MS.gene026443:CDS |
ATACCATAAGCCATGTGTGG+AGG | 0.651153 | 1.1:-18547812 | None:intergenic |
ACTCGATGAACAAAGACAGA+AGG | 0.651461 | 1.1:+18547552 | MS.gene026443:CDS |
TGACCGGTGATGGGTCCTTG+AGG | 0.663516 | 1.1:-18547626 | None:intergenic |
GAGGAGCGGAAAGATTCACA+GGG | 0.668882 | 1.1:-18547793 | None:intergenic |
TGAGGAGCAGAAGTATGATG+AGG | 0.681290 | 1.1:-18547905 | None:intergenic |
GACATTACAAGCGTTAACAA+CGG | 0.687822 | 1.1:+18547590 | MS.gene026443:CDS |
ACAGCAGCACTTTACCTGTG+AGG | 0.725384 | 1.1:-18547923 | None:intergenic |
AGGAGCGGAAAGATTCACAG+GGG | 0.822895 | 1.1:-18547792 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAAAATATATTTCATATT+AGG | + | chr1.1:18547095-18547114 | MS.gene026443:intron | 10.0% |
!! | GGAATAATAAAAATAGATTA+TGG | - | chr1.1:18547133-18547152 | None:intergenic | 15.0% |
!! | AAATTTGCATGTAATGAAAT+TGG | - | chr1.1:18547256-18547275 | None:intergenic | 20.0% |
!! | TAACACAAAATGATAGAATA+AGG | + | chr1.1:18547180-18547199 | MS.gene026443:intron | 20.0% |
!!! | TTTTGCTTCAAATTTCAAAT+TGG | + | chr1.1:18547396-18547415 | MS.gene026443:intron | 20.0% |
! | ATAAAAATAGATTATGGCGA+AGG | - | chr1.1:18547127-18547146 | None:intergenic | 25.0% |
! | TAAGGATCAAATCTTAACTA+TGG | - | chr1.1:18547209-18547228 | None:intergenic | 25.0% |
!! | AAATTTCAAATTGGTTCAAC+AGG | + | chr1.1:18547405-18547424 | MS.gene026443:intron | 25.0% |
!! | CTGTTAAAATTTAGAATCTG+AGG | + | chr1.1:18547299-18547318 | MS.gene026443:intron | 25.0% |
!!! | GTGTGAATTTTGTAGTTTTA+TGG | + | chr1.1:18547340-18547359 | MS.gene026443:intron | 25.0% |
CTTAAAGAACACAAGGAAAT+GGG | - | chr1.1:18547154-18547173 | None:intergenic | 30.0% | |
GCCAATATAGTCGAATATAA+TGG | - | chr1.1:18547027-18547046 | None:intergenic | 30.0% | |
GCCATTATATTCGACTATAT+TGG | + | chr1.1:18547023-18547042 | MS.gene026443:CDS | 30.0% | |
GTAAGTCAAAGAAGAATGTA+AGG | - | chr1.1:18547227-18547246 | None:intergenic | 30.0% | |
!! | ACTGTCTGTTTCTAATGAAA+TGG | + | chr1.1:18547365-18547384 | MS.gene026443:intron | 30.0% |
!! | GAATGAAGTATTTTTGTGCA+TGG | - | chr1.1:18547526-18547545 | None:intergenic | 30.0% |
!! | TTCAACAGGTTATTTCTTCT+GGG | + | chr1.1:18547419-18547438 | MS.gene026443:intron | 30.0% |
AGAGAACCTTAAAGAACACA+AGG | - | chr1.1:18547161-18547180 | None:intergenic | 35.0% | |
ATAGATTATGGCGAAGGTAA+AGG | - | chr1.1:18547121-18547140 | None:intergenic | 35.0% | |
CCATTTCCTTGTGTTCTTTA+AGG | + | chr1.1:18547152-18547171 | MS.gene026443:intron | 35.0% | |
CCTTAAAGAACACAAGGAAA+TGG | - | chr1.1:18547155-18547174 | None:intergenic | 35.0% | |
GACATTACAAGCGTTAACAA+CGG | + | chr1.1:18547590-18547609 | MS.gene026443:CDS | 35.0% | |
!! | GTTCAACAGGTTATTTCTTC+TGG | + | chr1.1:18547418-18547437 | MS.gene026443:intron | 35.0% |
ACTCGATGAACAAAGACAGA+AGG | + | chr1.1:18547552-18547571 | MS.gene026443:CDS | 40.0% | |
GATACTAAAGGTCCTCCTAT+CGG | - | chr1.1:18547761-18547780 | None:intergenic | 40.0% | |
GCTTGTAATGTCATGTATGC+TGG | - | chr1.1:18547582-18547601 | None:intergenic | 40.0% | |
! | CAGAAGTATGATGAGGCATA+GGG | - | chr1.1:18547901-18547920 | None:intergenic | 40.0% |
! | TTGCTACTTGTGTTGGTGTT+CGG | - | chr1.1:18547502-18547521 | None:intergenic | 40.0% |
AAGCTGTTCCATCGACAACT+GGG | + | chr1.1:18547693-18547712 | MS.gene026443:CDS | 45.0% | |
AGATGAACCGTTCGTTTGAC+CGG | - | chr1.1:18547645-18547664 | None:intergenic | 45.0% | |
ATACCATAAGCCATGTGTGG+AGG | - | chr1.1:18547815-18547834 | None:intergenic | 45.0% | |
ATCATACTTCTGCTCCTCAC+AGG | + | chr1.1:18547909-18547928 | MS.gene026443:CDS | 45.0% | |
CGAATACCATAAGCCATGTG+TGG | - | chr1.1:18547818-18547837 | None:intergenic | 45.0% | |
GAGGCATAGGGTATGTCATA+GGG | - | chr1.1:18547889-18547908 | None:intergenic | 45.0% | |
GGACCTTTAGTATCTGCTGT+TGG | + | chr1.1:18547767-18547786 | MS.gene026443:CDS | 45.0% | |
GGAGATGTTTCAACACCTCA+AGG | + | chr1.1:18547611-18547630 | MS.gene026443:CDS | 45.0% | |
GGTTCATCTGGAAATTCTGC+TGG | + | chr1.1:18547656-18547675 | MS.gene026443:CDS | 45.0% | |
GTGCCAACAGCAGATACTAA+AGG | - | chr1.1:18547773-18547792 | None:intergenic | 45.0% | |
TACCAGAGCAAACTAGTGAC+TGG | - | chr1.1:18547074-18547093 | None:intergenic | 45.0% | |
TGAGGCATAGGGTATGTCAT+AGG | - | chr1.1:18547890-18547909 | None:intergenic | 45.0% | |
! | CTATCGGTTGTCCAATGGTA+GGG | - | chr1.1:18547745-18547764 | None:intergenic | 45.0% |
! | GCAGAAGTATGATGAGGCAT+AGG | - | chr1.1:18547902-18547921 | None:intergenic | 45.0% |
! | TATCGGTTGTCCAATGGTAG+GGG | - | chr1.1:18547744-18547763 | None:intergenic | 45.0% |
! | TGAGGAGCAGAAGTATGATG+AGG | - | chr1.1:18547908-18547927 | None:intergenic | 45.0% |
! | TGCTACTTGTGTTGGTGTTC+GGG | - | chr1.1:18547501-18547520 | None:intergenic | 45.0% |
!! | TTCCAGTCACTAGTTTGCTC+TGG | + | chr1.1:18547069-18547088 | MS.gene026443:CDS | 45.0% |
ACAAGTACGGAAAAGGCGAC+TGG | + | chr1.1:18547447-18547466 | MS.gene026443:CDS | 50.0% | |
ACCATTGGACAACCGATAGG+AGG | + | chr1.1:18547746-18547765 | MS.gene026443:CDS | 50.0% | |
AGGAGCGGAAAGATTCACAG+GGG | - | chr1.1:18547795-18547814 | None:intergenic | 50.0% | |
ATAAGCCATGTGTGGAGGAG+CGG | - | chr1.1:18547810-18547829 | None:intergenic | 50.0% | |
ATGTATGCTGCCCCTACCAT+TGG | + | chr1.1:18547731-18547750 | MS.gene026443:CDS | 50.0% | |
CAAGCTGTTCCATCGACAAC+TGG | + | chr1.1:18547692-18547711 | MS.gene026443:CDS | 50.0% | |
CCTACCATTGGACAACCGAT+AGG | + | chr1.1:18547743-18547762 | MS.gene026443:CDS | 50.0% | |
GAGGAGCGGAAAGATTCACA+GGG | - | chr1.1:18547796-18547815 | None:intergenic | 50.0% | |
GGTCAAACGAACGGTTCATC+TGG | + | chr1.1:18547644-18547663 | MS.gene026443:CDS | 50.0% | |
GTCATAGGGACCATGTTCAC+TGG | - | chr1.1:18547875-18547894 | None:intergenic | 50.0% | |
! | CCTATCGGTTGTCCAATGGT+AGG | - | chr1.1:18547746-18547765 | None:intergenic | 50.0% |
! | TCCTCCTATCGGTTGTCCAA+TGG | - | chr1.1:18547750-18547769 | None:intergenic | 50.0% |
!! | CAGGTTATTTCTTCTGGGCC+TGG | + | chr1.1:18547424-18547443 | MS.gene026443:intron | 50.0% |
!! | GCATGGCTTGCTACTTGTGT+TGG | - | chr1.1:18547509-18547528 | None:intergenic | 50.0% |
ACACCTCAAGGACCCATCAC+CGG | + | chr1.1:18547623-18547642 | MS.gene026443:CDS | 55.0% | |
ACCGTTCGTTTGACCGGTGA+TGG | - | chr1.1:18547639-18547658 | None:intergenic | 55.0% | |
CCCATCACCGGTCAAACGAA+CGG | + | chr1.1:18547635-18547654 | MS.gene026443:CDS | 55.0% | |
CCGTTCGTTTGACCGGTGAT+GGG | - | chr1.1:18547638-18547657 | None:intergenic | 55.0% | |
CTTCTGGGCCTGGACAAGTA+CGG | + | chr1.1:18547434-18547453 | MS.gene026443:CDS | 55.0% | |
GACACAACTGTACCGGGAAC+TGG | - | chr1.1:18547845-18547864 | None:intergenic | 55.0% | |
GACCATGTTCACTGGTGCAC+CGG | - | chr1.1:18547867-18547886 | None:intergenic | 55.0% | |
GCAGCATACATTCCTGCACC+TGG | - | chr1.1:18547722-18547741 | None:intergenic | 55.0% | |
GCTCCTCCACACATGGCTTA+TGG | + | chr1.1:18547809-18547828 | MS.gene026443:CDS | 55.0% | |
GGAGGAGCGGAAAGATTCAC+AGG | - | chr1.1:18547797-18547816 | None:intergenic | 55.0% | |
GGCCTGGACAAGTACGGAAA+AGG | + | chr1.1:18547440-18547459 | MS.gene026443:CDS | 55.0% | |
GGTATTCGAGCACCAGTTCC+CGG | + | chr1.1:18547830-18547849 | MS.gene026443:CDS | 55.0% | |
GTTCCCGGTACAGTTGTGTC+CGG | + | chr1.1:18547845-18547864 | MS.gene026443:CDS | 55.0% | |
TCTTTCCGCTCCTCCACACA+TGG | + | chr1.1:18547802-18547821 | MS.gene026443:CDS | 55.0% | |
TGCACCGGACACAACTGTAC+CGG | - | chr1.1:18547852-18547871 | None:intergenic | 55.0% | |
! | CGCCTTTTCCGTACTTGTCC+AGG | - | chr1.1:18547445-18547464 | None:intergenic | 55.0% |
ACAACTGGGCTACCAGGTGC+AGG | + | chr1.1:18547707-18547726 | MS.gene026443:CDS | 60.0% | |
CCATCGACAACTGGGCTACC+AGG | + | chr1.1:18547701-18547720 | MS.gene026443:CDS | 60.0% | |
CCTGGTAGCCCAGTTGTCGA+TGG | - | chr1.1:18547704-18547723 | None:intergenic | 60.0% | |
GCACCGGACACAACTGTACC+GGG | - | chr1.1:18547851-18547870 | None:intergenic | 60.0% | |
GTCCGGTGCACCAGTGAACA+TGG | + | chr1.1:18547862-18547881 | MS.gene026443:CDS | 60.0% | |
!! | TGACCGGTGATGGGTCCTTG+AGG | - | chr1.1:18547629-18547648 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 18547017 | 18547934 | 18547017 | ID=MS.gene026443 |
chr1.1 | mRNA | 18547017 | 18547934 | 18547017 | ID=MS.gene026443.t1;Parent=MS.gene026443 |
chr1.1 | exon | 18547017 | 18547090 | 18547017 | ID=MS.gene026443.t1.exon1;Parent=MS.gene026443.t1 |
chr1.1 | CDS | 18547017 | 18547090 | 18547017 | ID=cds.MS.gene026443.t1;Parent=MS.gene026443.t1 |
chr1.1 | exon | 18547427 | 18547934 | 18547427 | ID=MS.gene026443.t1.exon2;Parent=MS.gene026443.t1 |
chr1.1 | CDS | 18547427 | 18547934 | 18547427 | ID=cds.MS.gene026443.t1;Parent=MS.gene026443.t1 |
Gene Sequence |
Protein sequence |