AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026513

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026513.t1 MTR_1g032600 88.323 334 28 5 1 327 26 355 0.0 575
MS.gene026513.t1 MTR_4g075480 56.522 253 91 6 39 283 23 264 2.35e-79 244
MS.gene026513.t1 MTR_4g075480 57.025 242 86 5 49 283 6 236 3.47e-78 240
MS.gene026513.t1 MTR_4g108360 43.137 102 58 0 48 149 49 150 1.03e-21 92.4
MS.gene026513.t1 MTR_4g081370 34.014 147 76 4 54 196 37 166 6.87e-19 83.6
MS.gene026513.t1 MTR_4g081370 43.617 94 52 1 54 146 81 174 1.99e-18 83.2
MS.gene026513.t1 MTR_2g082640 43.000 100 52 2 54 152 74 169 2.00e-18 83.2
MS.gene026513.t1 MTR_1g043430 35.976 164 78 6 54 216 95 232 7.14e-17 79.3
MS.gene026513.t1 MTR_2g089000 43.478 92 51 1 54 144 110 201 1.15e-16 79.0
MS.gene026513.t1 MTR_4g108360 44.595 74 41 0 76 149 24 97 1.80e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026513.t1 AT3G19860 51.429 245 109 5 47 289 3 239 4.39e-73 228
MS.gene026513.t1 AT3G19860 50.394 254 116 5 40 291 27 272 1.43e-72 227
MS.gene026513.t1 AT3G19860 50.794 252 114 5 40 289 49 292 3.61e-72 227
MS.gene026513.t1 AT4G36060 39.919 248 96 8 53 288 30 236 4.43e-46 157
MS.gene026513.t1 AT4G36060 39.919 248 96 8 53 288 48 254 1.88e-45 156
MS.gene026513.t1 AT4G36060 39.916 238 91 7 53 279 30 226 6.72e-44 152
MS.gene026513.t1 AT4G36060 39.916 238 91 7 53 279 48 244 2.21e-43 151
MS.gene026513.t1 AT3G23210 39.130 138 73 5 54 180 138 275 2.98e-18 84.0
MS.gene026513.t1 AT3G23210 39.130 138 73 5 54 180 167 304 5.69e-18 83.6
MS.gene026513.t1 AT5G54680 42.000 100 53 2 54 152 76 171 7.32e-18 81.6
MS.gene026513.t1 AT1G51070 44.681 94 51 1 54 146 71 164 6.16e-16 76.3
MS.gene026513.t1 AT3G47640 33.645 107 71 0 48 154 26 132 8.46e-16 76.3
MS.gene026513.t1 AT3G47640 33.645 107 71 0 48 154 26 132 8.46e-16 76.3
MS.gene026513.t1 AT3G47640 33.645 107 71 0 48 154 26 132 8.46e-16 76.3
MS.gene026513.t1 AT1G51070 44.681 94 51 1 54 146 137 230 1.49e-15 76.3
MS.gene026513.t1 AT4G14410 33.103 145 74 3 54 197 129 251 4.27e-14 72.0
MS.gene026513.t1 AT4G14410 33.103 145 74 3 54 197 129 251 4.27e-14 72.0
MS.gene026513.t1 AT4G14410 33.103 145 74 3 54 197 135 257 5.21e-14 71.6

Find 79 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATATGACCAGGATTT+TGG 0.212723 1.1:-17544764 None:intergenic
CATCAATTGGGAAACGTAAT+AGG 0.223751 1.1:+17543766 MS.gene026513:CDS
ATAGGAACGGGGTACGTATA+AGG 0.292057 1.1:-17544669 None:intergenic
TTAAAGACGCTTTCTCTTCT+CGG 0.308272 1.1:-17544551 None:intergenic
TGAATCAGAGGTTGGTGTTT+TGG 0.315567 1.1:-17543528 None:intergenic
TTGTCATTCCGTGGTCTATC+AGG 0.332142 1.1:-17544319 None:intergenic
CCATCATCAACCACTCTATC+AGG 0.350477 1.1:+17543561 MS.gene026513:CDS
CTCAATGTATATTCCATTCT+CGG 0.354937 1.1:+17544794 MS.gene026513:CDS
TCAAGCTCTGTTGCCACATC+TGG 0.367803 1.1:-17544954 None:intergenic
TGAGCTGATGGCATCTCTAT+TGG 0.379396 1.1:-17544831 None:intergenic
AGGCTGACCGTGAGAAAATC+AGG 0.380020 1.1:+17543719 MS.gene026513:CDS
GAGCCAGTATTCTGCATCTC+AGG 0.388043 1.1:+17545169 MS.gene026513:CDS
AAAGTCAATTAACTAGCCTT+TGG 0.391631 1.1:-17545227 None:intergenic
ATCTCTATTGGAGGGATAGC+TGG 0.399284 1.1:-17544819 None:intergenic
ATTGGCATTGGCATAGGAAC+GGG 0.403675 1.1:-17544681 None:intergenic
GTCCCTGAGATGCAGAATAC+TGG 0.415172 1.1:-17545172 None:intergenic
TTGCATAGGTGGTGGGTGAA+TGG 0.420730 1.1:-17544721 None:intergenic
TTGAATTGTCTCTGTGATGA+TGG 0.441426 1.1:-17544347 None:intergenic
TTTGCGGCGGCGGAGGCGGT+GGG 0.450236 1.1:-17543499 None:intergenic
TAGGAACGGGGTACGTATAA+GGG 0.451220 1.1:-17544668 None:intergenic
TGGAGTGTTGCTGACGCTGT+TGG 0.452978 1.1:-17545207 None:intergenic
TGGTTTCCATAGTAAGGAAA+AGG 0.470758 1.1:-17544744 None:intergenic
GAGCTTGAGCTTAAGATGCC+TGG 0.473388 1.1:+17544969 MS.gene026513:CDS
GCCTGGATCATCAACACAAC+AGG 0.473485 1.1:+17544986 MS.gene026513:CDS
GGGTGAATGGAAACCGGACC+AGG 0.474052 1.1:-17544708 None:intergenic
AATGCCAATCCCTCCTGGTC+CGG 0.475088 1.1:+17544695 MS.gene026513:CDS
GGAAAAGGTTGCATAGGTGG+TGG 0.479444 1.1:-17544729 None:intergenic
GCATGGCTCTGACTCTCTGC+TGG 0.479835 1.1:-17544605 None:intergenic
GAAACCGGACCAGGAGGGAT+TGG 0.482079 1.1:-17544699 None:intergenic
CTAAACACGTGGGATGTAGA+AGG 0.488709 1.1:-17544858 None:intergenic
ATGCCAATGCCAATCCCTCC+TGG 0.495420 1.1:+17544690 MS.gene026513:CDS
GGGATAGCTGGAGCCGAGAA+TGG 0.495557 1.1:-17544807 None:intergenic
TACTATGGAAACCAAAATCC+TGG 0.503568 1.1:+17544753 MS.gene026513:CDS
GTGTAGAGAGAAGAGTGAGA+TGG 0.512423 1.1:+17543663 MS.gene026513:intron
AGAGACAATTCAAGTGCTAA+AGG 0.518046 1.1:+17544357 MS.gene026513:CDS
TTTCTAGCAACAACAACACT+TGG 0.522874 1.1:-17543688 None:intergenic
TGCAACACATGATCAATCAA+TGG 0.526037 1.1:+17543474 MS.gene026513:CDS
GGTGGTGGGTGAATGGAAAC+CGG 0.527150 1.1:-17544714 None:intergenic
CCTGATAGAGTGGTTGATGA+TGG 0.528302 1.1:-17543561 None:intergenic
AATTGCAGTCCATGGTGGCA+TGG 0.531488 1.1:-17544622 None:intergenic
GCTGATGGCATCTCTATTGG+AGG 0.536435 1.1:-17544828 None:intergenic
CTATAGGATTGCACATCTAG+AGG 0.536684 1.1:+17545089 MS.gene026513:intron
CTACATCTTTCTGCATCACT+AGG 0.537613 1.1:-17544924 None:intergenic
TAAGGAAAAGGTTGCATAGG+TGG 0.539867 1.1:-17544732 None:intergenic
ACCTGTTGTGTTGATGATCC+AGG 0.545050 1.1:-17544987 None:intergenic
GGAGGGATTGGCATTGGCAT+AGG 0.546018 1.1:-17544687 None:intergenic
TGCGCAGGTGAATCAGAGGT+TGG 0.546060 1.1:-17543536 None:intergenic
GAATGGTCAATTGCAGTCCA+TGG 0.547989 1.1:-17544630 None:intergenic
CTAGGTCTTCTTCTATGACC+TGG 0.556746 1.1:-17544906 None:intergenic
GGACCAGGAGGGATTGGCAT+TGG 0.561637 1.1:-17544693 None:intergenic
TAGTAAGGAAAAGGTTGCAT+AGG 0.564004 1.1:-17544735 None:intergenic
GATTGGCATTGGCATAGGAA+CGG 0.568920 1.1:-17544682 None:intergenic
GAAAAGGTTGCATAGGTGGT+GGG 0.571733 1.1:-17544728 None:intergenic
GTAGAAGGATACTGAGCTGA+TGG 0.572163 1.1:-17544843 None:intergenic
TGGTTGATGATGGGCTGCGC+AGG 0.575159 1.1:-17543551 None:intergenic
TGTTGCTAGAAAAGTTCAGA+AGG 0.582816 1.1:+17543699 MS.gene026513:CDS
AGCCAGTATTCTGCATCTCA+GGG 0.590410 1.1:+17545170 MS.gene026513:CDS
ATATACATTGAGGATAGACT+TGG 0.594802 1.1:-17544783 None:intergenic
CTGATAGAGTGGTTGATGAT+GGG 0.597237 1.1:-17543560 None:intergenic
GAGTCTCGAAGCAAGTCACC+AGG 0.602988 1.1:+17544888 MS.gene026513:CDS
AGAGCATAAATCACTTTCTG+AGG 0.607090 1.1:+17544411 MS.gene026513:CDS
CGAGAATGGAATATACATTG+AGG 0.609687 1.1:-17544793 None:intergenic
GATAGACTTGGAATATGACC+AGG 0.610908 1.1:-17544771 None:intergenic
ACATAGTATACCTGATAGAG+TGG 0.619679 1.1:-17543571 None:intergenic
ATGGTTGCCTTGTCATTCCG+TGG 0.623588 1.1:-17544328 None:intergenic
TGAATGGAAACCGGACCAGG+AGG 0.624977 1.1:-17544705 None:intergenic
GGCTACTCATGACAACAGAA+TGG 0.634259 1.1:-17544647 None:intergenic
GAATGGAAACCGGACCAGGA+GGG 0.634490 1.1:-17544704 None:intergenic
CTGATGGCATCTCTATTGGA+GGG 0.634505 1.1:-17544827 None:intergenic
CAGCGTCAGCAACACTCCAA+AGG 0.635368 1.1:+17545211 MS.gene026513:CDS
GAGTCAGAGCCATGCCACCA+TGG 0.644309 1.1:+17544613 MS.gene026513:CDS
TGATAGACCACGGAATGACA+AGG 0.652628 1.1:+17544321 MS.gene026513:CDS
TTGGCATTGGCATAGGAACG+GGG 0.655443 1.1:-17544680 None:intergenic
GGGCTGCGCAGGTGAATCAG+AGG 0.667682 1.1:-17543540 None:intergenic
ATGTAGTGTGTCTCCAGATG+TGG 0.671060 1.1:+17544941 MS.gene026513:CDS
ATGCAGATCCTGATAGACCA+CGG 0.688242 1.1:+17544311 MS.gene026513:intron
TGGTCAATTGCAGTCCATGG+TGG 0.700069 1.1:-17544627 None:intergenic
TGACCGTGAGAAAATCAGGA+GGG 0.716148 1.1:+17543723 MS.gene026513:CDS
CTGACCGTGAGAAAATCAGG+AGG 0.717963 1.1:+17543722 MS.gene026513:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTAAATTCAAAAAAACTA+GGG + chr1.1:17544065-17544084 MS.gene026513:intron 15.0%
!!! AGAATTAAGATTTTCTATAT+CGG - chr1.1:17544580-17544599 None:intergenic 15.0%
!! GATCTAAATTCAAAAAAACT+AGG + chr1.1:17544064-17544083 MS.gene026513:intron 20.0%
!! TCTAAATTCAAAAAAACTAG+GGG + chr1.1:17544066-17544085 MS.gene026513:intron 20.0%
!! TGTAAAACAACAATAATCAA+AGG - chr1.1:17544203-17544222 None:intergenic 20.0%
!!! AAATGATCATTTTCATCAAT+TGG + chr1.1:17543753-17543772 MS.gene026513:CDS 20.0%
!!! AATGATCATTTTCATCAATT+GGG + chr1.1:17543754-17543773 MS.gene026513:CDS 20.0%
!!! GTAAGTTTTTTAATCTTGTT+TGG + chr1.1:17543788-17543807 MS.gene026513:intron 20.0%
! AACAACTACCATTTCAAATT+TGG - chr1.1:17544258-17544277 None:intergenic 25.0%
! ATTAAGAAAACATTGCAGTA+AGG + chr1.1:17543911-17543930 MS.gene026513:intron 25.0%
! TACATTAGTATTAGTGGAAA+GGG + chr1.1:17544177-17544196 MS.gene026513:intron 25.0%
!! AAGTATTGCCAAATTTGAAA+TGG + chr1.1:17544247-17544266 MS.gene026513:intron 25.0%
!!! AATGTATTTTCACACTGATT+TGG - chr1.1:17544011-17544030 None:intergenic 25.0%
ACCTTCATTCTGATTTCTAT+AGG + chr1.1:17545073-17545092 MS.gene026513:intron 30.0%
ATATACATTGAGGATAGACT+TGG - chr1.1:17544786-17544805 None:intergenic 30.0%
CAGGATATGATATCTACAAT+TGG + chr1.1:17543953-17543972 MS.gene026513:intron 30.0%
CTACATTAGTATTAGTGGAA+AGG + chr1.1:17544176-17544195 MS.gene026513:intron 30.0%
CTCAATGTATATTCCATTCT+CGG + chr1.1:17544794-17544813 MS.gene026513:CDS 30.0%
GAACATGAATATCTCAACTA+CGG - chr1.1:17544281-17544300 None:intergenic 30.0%
GTTGACTACATTAGTATTAG+TGG + chr1.1:17544171-17544190 MS.gene026513:intron 30.0%
TACTAATGTAGTCAACTATG+TGG - chr1.1:17544167-17544186 None:intergenic 30.0%
TCCTATAGAAATCAGAATGA+AGG - chr1.1:17545077-17545096 None:intergenic 30.0%
!! TTTTAGCACTGAAACAAGTT+TGG - chr1.1:17545046-17545065 None:intergenic 30.0%
AACATTGCAGTAAGGAAAAC+AGG + chr1.1:17543919-17543938 MS.gene026513:intron 35.0%
ACATAGTATACCTGATAGAG+TGG - chr1.1:17543574-17543593 None:intergenic 35.0%
AGAGACAATTCAAGTGCTAA+AGG + chr1.1:17544357-17544376 MS.gene026513:CDS 35.0%
AGAGCATAAATCACTTTCTG+AGG + chr1.1:17544411-17544430 MS.gene026513:CDS 35.0%
CATCAATTGGGAAACGTAAT+AGG + chr1.1:17543766-17543785 MS.gene026513:CDS 35.0%
CGAGAATGGAATATACATTG+AGG - chr1.1:17544796-17544815 None:intergenic 35.0%
TACTATGGAAACCAAAATCC+TGG + chr1.1:17544753-17544772 MS.gene026513:CDS 35.0%
TAGTAAGGAAAAGGTTGCAT+AGG - chr1.1:17544738-17544757 None:intergenic 35.0%
TGCAACACATGATCAATCAA+TGG + chr1.1:17543474-17543493 MS.gene026513:CDS 35.0%
TGGTTTCCATAGTAAGGAAA+AGG - chr1.1:17544747-17544766 None:intergenic 35.0%
TGTTGCTAGAAAAGTTCAGA+AGG + chr1.1:17543699-17543718 MS.gene026513:CDS 35.0%
TTAAAGACGCTTTCTCTTCT+CGG - chr1.1:17544554-17544573 None:intergenic 35.0%
TTGAATTGTCTCTGTGATGA+TGG - chr1.1:17544350-17544369 None:intergenic 35.0%
TTGCACATCTAGAGGAAAAA+AGG + chr1.1:17545097-17545116 MS.gene026513:CDS 35.0%
! AGGAAAAAAGGCAAAGCATT+CGG + chr1.1:17545109-17545128 MS.gene026513:CDS 35.0%
! ATGCAACCTTTTCCTTACTA+TGG + chr1.1:17544738-17544757 MS.gene026513:CDS 35.0%
! TTGGAATATGACCAGGATTT+TGG - chr1.1:17544767-17544786 None:intergenic 35.0%
! TTTCTAGCAACAACAACACT+TGG - chr1.1:17543691-17543710 None:intergenic 35.0%
!!! GGATTTTGGTTTCCATAGTA+AGG - chr1.1:17544753-17544772 None:intergenic 35.0%
AAAAAAAAAAAGGGCCGAGC+TGG - chr1.1:17543869-17543888 None:intergenic 40.0%
CTACATCTTTCTGCATCACT+AGG - chr1.1:17544927-17544946 None:intergenic 40.0%
CTATAGGATTGCACATCTAG+AGG + chr1.1:17545089-17545108 MS.gene026513:intron 40.0%
GATAGACTTGGAATATGACC+AGG - chr1.1:17544774-17544793 None:intergenic 40.0%
TAAGGAAAAGGTTGCATAGG+TGG - chr1.1:17544735-17544754 None:intergenic 40.0%
! ACTCTTTTCGACTAAACACG+TGG - chr1.1:17544872-17544891 None:intergenic 40.0%
! CTCTTTTCGACTAAACACGT+GGG - chr1.1:17544871-17544890 None:intergenic 40.0%
!! CTGATAGAGTGGTTGATGAT+GGG - chr1.1:17543563-17543582 None:intergenic 40.0%
!! GGTGTTTTGGATGAGTTTTG+CGG - chr1.1:17543518-17543537 None:intergenic 40.0%
!!! TGAATCAGAGGTTGGTGTTT+TGG - chr1.1:17543531-17543550 None:intergenic 40.0%
AGCCAGTATTCTGCATCTCA+GGG + chr1.1:17545170-17545189 MS.gene026513:CDS 45.0%
ATAGGAACGGGGTACGTATA+AGG - chr1.1:17544672-17544691 None:intergenic 45.0%
ATCTCTATTGGAGGGATAGC+TGG - chr1.1:17544822-17544841 None:intergenic 45.0%
ATGCAGATCCTGATAGACCA+CGG + chr1.1:17544311-17544330 MS.gene026513:intron 45.0%
ATGTAGTGTGTCTCCAGATG+TGG + chr1.1:17544941-17544960 MS.gene026513:CDS 45.0%
CCATCATCAACCACTCTATC+AGG + chr1.1:17543561-17543580 MS.gene026513:CDS 45.0%
CTAAACACGTGGGATGTAGA+AGG - chr1.1:17544861-17544880 None:intergenic 45.0%
CTAGGTCTTCTTCTATGACC+TGG - chr1.1:17544909-17544928 None:intergenic 45.0%
CTGAGGAGTCACATGAAGTA+AGG + chr1.1:17544428-17544447 MS.gene026513:intron 45.0%
CTGATGGCATCTCTATTGGA+GGG - chr1.1:17544830-17544849 None:intergenic 45.0%
GAAAAGGTTGCATAGGTGGT+GGG - chr1.1:17544731-17544750 None:intergenic 45.0%
GAATGGTCAATTGCAGTCCA+TGG - chr1.1:17544633-17544652 None:intergenic 45.0%
GGCTACTCATGACAACAGAA+TGG - chr1.1:17544650-17544669 None:intergenic 45.0%
GTAGAAGGATACTGAGCTGA+TGG - chr1.1:17544846-17544865 None:intergenic 45.0%
GTGTAGAGAGAAGAGTGAGA+TGG + chr1.1:17543663-17543682 MS.gene026513:intron 45.0%
TAGGAACGGGGTACGTATAA+GGG - chr1.1:17544671-17544690 None:intergenic 45.0%
TGACCGTGAGAAAATCAGGA+GGG + chr1.1:17543723-17543742 MS.gene026513:CDS 45.0%
TGAGCTGATGGCATCTCTAT+TGG - chr1.1:17544834-17544853 None:intergenic 45.0%
TGATAGACCACGGAATGACA+AGG + chr1.1:17544321-17544340 MS.gene026513:CDS 45.0%
TTGTCATTCCGTGGTCTATC+AGG - chr1.1:17544322-17544341 None:intergenic 45.0%
! GAACCCTCCTGATTTTCTCA+CGG - chr1.1:17543729-17543748 None:intergenic 45.0%
!! ACCTGTTGTGTTGATGATCC+AGG - chr1.1:17544990-17545009 None:intergenic 45.0%
!! ATTGGCATTGGCATAGGAAC+GGG - chr1.1:17544684-17544703 None:intergenic 45.0%
!! CCTGATAGAGTGGTTGATGA+TGG - chr1.1:17543564-17543583 None:intergenic 45.0%
!! GATTGGCATTGGCATAGGAA+CGG - chr1.1:17544685-17544704 None:intergenic 45.0%
!! GTTTTGGATGAGTTTTGCGG+CGG - chr1.1:17543515-17543534 None:intergenic 45.0%
!! ATATGATAAAAAAAAAAAAA+AGG - chr1.1:17543879-17543898 None:intergenic 5.0%
!! TATGATAAAAAAAAAAAAAA+GGG - chr1.1:17543878-17543897 None:intergenic 5.0%
AAAACAGGCAGTCACGAGTC+AGG + chr1.1:17543934-17543953 MS.gene026513:intron 50.0%
AATTGCAGTCCATGGTGGCA+TGG - chr1.1:17544625-17544644 None:intergenic 50.0%
AGGCTGACCGTGAGAAAATC+AGG + chr1.1:17543719-17543738 MS.gene026513:CDS 50.0%
ATGGTTGCCTTGTCATTCCG+TGG - chr1.1:17544331-17544350 None:intergenic 50.0%
CTGACCGTGAGAAAATCAGG+AGG + chr1.1:17543722-17543741 MS.gene026513:CDS 50.0%
GAGCCAGTATTCTGCATCTC+AGG + chr1.1:17545169-17545188 MS.gene026513:CDS 50.0%
GAGCTTGAGCTTAAGATGCC+TGG + chr1.1:17544969-17544988 MS.gene026513:CDS 50.0%
GCCTGGATCATCAACACAAC+AGG + chr1.1:17544986-17545005 MS.gene026513:CDS 50.0%
GCTGATGGCATCTCTATTGG+AGG - chr1.1:17544831-17544850 None:intergenic 50.0%
GGAAAAGGTTGCATAGGTGG+TGG - chr1.1:17544732-17544751 None:intergenic 50.0%
GTCCCTGAGATGCAGAATAC+TGG - chr1.1:17545175-17545194 None:intergenic 50.0%
TCAAGCTCTGTTGCCACATC+TGG - chr1.1:17544957-17544976 None:intergenic 50.0%
TGGTCAATTGCAGTCCATGG+TGG - chr1.1:17544630-17544649 None:intergenic 50.0%
!! TTGCATAGGTGGTGGGTGAA+TGG - chr1.1:17544724-17544743 None:intergenic 50.0%
!! TTGGCATTGGCATAGGAACG+GGG - chr1.1:17544683-17544702 None:intergenic 50.0%
AATGCCAATCCCTCCTGGTC+CGG + chr1.1:17544695-17544714 MS.gene026513:CDS 55.0%
ATGCCAATGCCAATCCCTCC+TGG + chr1.1:17544690-17544709 MS.gene026513:CDS 55.0%
CAGCGTCAGCAACACTCCAA+AGG + chr1.1:17545211-17545230 MS.gene026513:CDS 55.0%
GAATGGAAACCGGACCAGGA+GGG - chr1.1:17544707-17544726 None:intergenic 55.0%
GAGTCTCGAAGCAAGTCACC+AGG + chr1.1:17544888-17544907 MS.gene026513:CDS 55.0%
TGAATGGAAACCGGACCAGG+AGG - chr1.1:17544708-17544727 None:intergenic 55.0%
TGCGCAGGTGAATCAGAGGT+TGG - chr1.1:17543539-17543558 None:intergenic 55.0%
! TTGGATGAGTTTTGCGGCGG+CGG - chr1.1:17543512-17543531 None:intergenic 55.0%
!! GGAGGGATTGGCATTGGCAT+AGG - chr1.1:17544690-17544709 None:intergenic 55.0%
!! GGTGGTGGGTGAATGGAAAC+CGG - chr1.1:17544717-17544736 None:intergenic 55.0%
!! TGGAGTGTTGCTGACGCTGT+TGG - chr1.1:17545210-17545229 None:intergenic 55.0%
ACGAGCTGTGCAAGCCAGCT+CGG + chr1.1:17543852-17543871 MS.gene026513:intron 60.0%
GAAACCGGACCAGGAGGGAT+TGG - chr1.1:17544702-17544721 None:intergenic 60.0%
GAGTCAGAGCCATGCCACCA+TGG + chr1.1:17544613-17544632 MS.gene026513:CDS 60.0%
GGGATAGCTGGAGCCGAGAA+TGG - chr1.1:17544810-17544829 None:intergenic 60.0%
GGGTGAATGGAAACCGGACC+AGG - chr1.1:17544711-17544730 None:intergenic 60.0%
! CTGGCTTGCACAGCTCGTAG+TGG - chr1.1:17543850-17543869 None:intergenic 60.0%
! GGACCAGGAGGGATTGGCAT+TGG - chr1.1:17544696-17544715 None:intergenic 60.0%
!! GCATGGCTCTGACTCTCTGC+TGG - chr1.1:17544608-17544627 None:intergenic 60.0%
!! TGGTTGATGATGGGCTGCGC+AGG - chr1.1:17543554-17543573 None:intergenic 60.0%
GGGCTGCGCAGGTGAATCAG+AGG - chr1.1:17543543-17543562 None:intergenic 65.0%
! GATGAGTTTTGCGGCGGCGG+AGG - chr1.1:17543509-17543528 None:intergenic 65.0%
! GAGTTTTGCGGCGGCGGAGG+CGG - chr1.1:17543506-17543525 None:intergenic 70.0%
TTTGCGGCGGCGGAGGCGGT+GGG - chr1.1:17543502-17543521 None:intergenic 75.0%
! TTTTGCGGCGGCGGAGGCGG+TGG - chr1.1:17543503-17543522 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 17543473 17545241 17543473 ID=MS.gene026513
chr1.1 mRNA 17543473 17545241 17543473 ID=MS.gene026513.t1;Parent=MS.gene026513
chr1.1 exon 17543473 17543582 17543473 ID=MS.gene026513.t1.exon1;Parent=MS.gene026513.t1
chr1.1 CDS 17543473 17543582 17543473 ID=cds.MS.gene026513.t1;Parent=MS.gene026513.t1
chr1.1 exon 17543669 17543787 17543669 ID=MS.gene026513.t1.exon2;Parent=MS.gene026513.t1
chr1.1 CDS 17543669 17543787 17543669 ID=cds.MS.gene026513.t1;Parent=MS.gene026513.t1
chr1.1 exon 17544317 17544444 17544317 ID=MS.gene026513.t1.exon3;Parent=MS.gene026513.t1
chr1.1 CDS 17544317 17544444 17544317 ID=cds.MS.gene026513.t1;Parent=MS.gene026513.t1
chr1.1 exon 17544528 17545007 17544528 ID=MS.gene026513.t1.exon4;Parent=MS.gene026513.t1
chr1.1 CDS 17544528 17545007 17544528 ID=cds.MS.gene026513.t1;Parent=MS.gene026513.t1
chr1.1 exon 17545095 17545241 17545095 ID=MS.gene026513.t1.exon5;Parent=MS.gene026513.t1
chr1.1 CDS 17545095 17545241 17545095 ID=cds.MS.gene026513.t1;Parent=MS.gene026513.t1
Gene Sequence

>MS.gene026513

ATGCAACACATGATCAATCAATGGAACCCACCGCCTCCGCCGCCGCAAAACTCATCCAAAACACCAACCTCTGATTCACCTGCGCAGCCCATCATCAACCACTCTATCAGGTATACTATGTTTGTGTTTTTCTGAACATGTTTGTTGATGATTAACTAAGTAATGAATTGAGTGTGTTGTGTTGTTGTTTGTGTAGAGAGAAGAGTGAGATGGAACCAAGTGTTGTTGTTGCTAGAAAAGTTCAGAAGGCTGACCGTGAGAAAATCAGGAGGGTTCGTTTAAATGATCATTTTCATCAATTGGGAAACGTAATAGGTAAGTTTTTTAATCTTGTTTGGATTCACACTTAGTTTTTTTCATAGAACACAACTCAGCCACTACGAGCTGTGCAAGCCAGCTCGGCCCTTTTTTTTTTTTTTATCATATCAACATCTTTTAATTAAGAAAACATTGCAGTAAGGAAAACAGGCAGTCACGAGTCAGGATATGATATCTACAATTGGATGAAGAGTAGACTGCTAGTATTCTAACTTCACCAAATCAGTGTGAAAATACATTTCAATATACGAGTTGTCTGATATTTTCATCTAAGATCTAAATTCAAAAAAACTAGGGGTCAAGCTTGTTTTGAAAGTTTTTTTATATTTGTAAACATGATTTGTTATAACATGTTATGACATGATTTTTTTATCCACATAGTTGACTACATTAGTATTAGTGGAAAGGGCCTTTGATTATTGTTGTTTTACAAGCAAGCAAATGTACAAATTAAACAAGTATTGCCAAATTTGAAATGGTAGTTGTTCCGTAGTTGAGATATTCATGTTCGTTGTACATGATGCAGATCCTGATAGACCACGGAATGACAAGGCAACCATCATCACAGAGACAATTCAAGTGCTAAAGGACATAACATCTGAAGTTGATAGACTGAAAACAGAGCATAAATCACTTTCTGAGGAGTCACATGAAGTAAGGTTCTTTTATTCGTTCAATTTGTCTTTAAGATCAAGCTTGTGTGCAGCTCATTTATTCATTTGATTTTATATTCACAGCTAATACAAGAAAAGAATGAACTCCGAGAAGAGAAAGCGTCTTTAAAATCCGATATAGAAAATCTTAATTCTCAGTACCAGCAGAGAGTCAGAGCCATGCCACCATGGACTGCAATTGACCATTCTGTTGTCATGAGTAGCCCTTATACGTACCCCGTTCCTATGCCAATGCCAATCCCTCCTGGTCCGGTTTCCATTCACCCACCACCTATGCAACCTTTTCCTTACTATGGAAACCAAAATCCTGGTCATATTCCAAGTCTATCCTCAATGTATATTCCATTCTCGGCTCCAGCTATCCCTCCAATAGAGATGCCATCAGCTCAGTATCCTTCTACATCCCACGTGTTTAGTCGAAAAGAGTCTCGAAGCAAGTCACCAGGTCATAGAAGAAGACCTAGTGATGCAGAAAGATGTAGTGTGTCTCCAGATGTGGCAACAGAGCTTGAGCTTAAGATGCCTGGATCATCAACACAACAGGTATATTATAAACAATTTATATATATCTCAAAAATCCAAACTTGTTTCAGTGCTAAAACTTACTGACCTTCATTCTGATTTCTATAGGATTGCACATCTAGAGGAAAAAAGGCAAAGCATTCGGTGATGAGTGATAGAATCATCATAGATGAGAGTGCTTCGAGCCAGTATTCTGCATCTCAGGGACTTCAAGATAGCTCCAACAGCGTCAGCAACACTCCAAAGGCTAGTTAA
Protein sequence

>MS.gene026513.t1

MQHMINQWNPPPPPPQNSSKTPTSDSPAQPIINHSIREKSEMEPSVVVARKVQKADREKIRRVRLNDHFHQLGNVIDPDRPRNDKATIITETIQVLKDITSEVDRLKTEHKSLSEESHELIQEKNELREEKASLKSDIENLNSQYQQRVRAMPPWTAIDHSVVMSSPYTYPVPMPMPIPPGPVSIHPPPMQPFPYYGNQNPGHIPSLSSMYIPFSAPAIPPIEMPSAQYPSTSHVFSRKESRSKSPGHRRRPSDAERCSVSPDVATELELKMPGSSTQQDCTSRGKKAKHSVMSDRIIIDESASSQYSASQGLQDSSNSVSNTPKAS