Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026536.t1 | XP_014503993.1 | 41.9 | 272 | 128 | 9 | 4 | 249 | 9 | 276 | 1.80E-39 | 172.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026536.t1 | Q9SCK6 | 33.3 | 180 | 99 | 8 | 1 | 167 | 10 | 181 | 5.9e-15 | 82.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026536.t1 | A0A1S3UD91 | 41.9 | 272 | 128 | 9 | 4 | 249 | 9 | 276 | 1.3e-39 | 172.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026536.t1 | TF | NAC |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026536.t1 | MTR_1g047060 | 68.085 | 94 | 27 | 1 | 111 | 204 | 1 | 91 | 1.34e-37 | 127 |
MS.gene026536.t1 | MTR_2g086880 | 35.333 | 150 | 76 | 7 | 6 | 146 | 20 | 157 | 2.15e-18 | 84.3 |
MS.gene026536.t1 | MTR_2g086880 | 35.333 | 150 | 76 | 7 | 6 | 146 | 20 | 157 | 2.38e-18 | 84.3 |
MS.gene026536.t1 | MTR_6g477900 | 33.146 | 178 | 87 | 8 | 4 | 167 | 6 | 165 | 6.39e-18 | 80.5 |
MS.gene026536.t1 | MTR_4g098630 | 38.125 | 160 | 79 | 9 | 2 | 147 | 4 | 157 | 9.87e-17 | 78.6 |
MS.gene026536.t1 | MTR_5g014300 | 35.625 | 160 | 82 | 8 | 2 | 146 | 4 | 157 | 3.64e-16 | 77.0 |
MS.gene026536.t1 | MTR_2g064090 | 35.256 | 156 | 83 | 7 | 4 | 147 | 6 | 155 | 4.22e-16 | 77.0 |
MS.gene026536.t1 | MTR_8g023930 | 34.899 | 149 | 87 | 5 | 4 | 146 | 24 | 168 | 5.87e-16 | 77.0 |
MS.gene026536.t1 | MTR_4g094302 | 30.818 | 159 | 85 | 7 | 4 | 148 | 11 | 158 | 1.64e-15 | 72.8 |
MS.gene026536.t1 | MTR_1g097300 | 34.815 | 135 | 78 | 4 | 6 | 136 | 21 | 149 | 2.31e-15 | 75.5 |
MS.gene026536.t1 | MTR_8g467490 | 32.099 | 162 | 84 | 6 | 6 | 147 | 16 | 171 | 2.44e-15 | 75.1 |
MS.gene026536.t1 | MTR_3g093050 | 29.730 | 185 | 104 | 7 | 1 | 171 | 19 | 191 | 3.69e-15 | 74.7 |
MS.gene026536.t1 | MTR_5g040420 | 32.919 | 161 | 83 | 7 | 6 | 147 | 16 | 170 | 3.69e-15 | 74.3 |
MS.gene026536.t1 | MTR_3g093050 | 29.730 | 185 | 104 | 7 | 1 | 171 | 19 | 191 | 5.57e-15 | 74.3 |
MS.gene026536.t1 | MTR_4g094302 | 33.846 | 130 | 76 | 5 | 4 | 133 | 11 | 130 | 6.32e-15 | 70.5 |
MS.gene026536.t1 | MTR_2g080010 | 30.909 | 165 | 92 | 5 | 4 | 162 | 15 | 163 | 6.96e-15 | 73.6 |
MS.gene026536.t1 | MTR_5g076850 | 31.818 | 176 | 95 | 9 | 4 | 163 | 6 | 172 | 7.34e-15 | 73.9 |
MS.gene026536.t1 | MTR_8g094580 | 32.716 | 162 | 81 | 7 | 4 | 148 | 7 | 157 | 9.85e-15 | 72.4 |
MS.gene026536.t1 | MTR_7g005280 | 35.065 | 154 | 80 | 7 | 4 | 147 | 15 | 158 | 1.30e-14 | 71.6 |
MS.gene026536.t1 | MTR_3g064580 | 33.333 | 159 | 82 | 9 | 4 | 147 | 6 | 155 | 2.26e-14 | 72.8 |
MS.gene026536.t1 | MTR_2g093810 | 31.875 | 160 | 84 | 5 | 4 | 146 | 14 | 165 | 3.34e-14 | 71.2 |
MS.gene026536.t1 | MTR_4g036030 | 33.758 | 157 | 86 | 8 | 2 | 147 | 5 | 154 | 4.36e-14 | 71.2 |
MS.gene026536.t1 | MTR_1g090720 | 35.583 | 163 | 78 | 7 | 4 | 147 | 42 | 196 | 6.09e-14 | 71.2 |
MS.gene026536.t1 | MTR_0036s0150 | 31.613 | 155 | 87 | 6 | 6 | 148 | 7 | 154 | 7.36e-14 | 70.9 |
MS.gene026536.t1 | MTR_7g100990 | 31.875 | 160 | 84 | 5 | 4 | 146 | 11 | 162 | 1.04e-13 | 70.1 |
MS.gene026536.t1 | MTR_4g089135 | 34.559 | 136 | 75 | 4 | 4 | 133 | 15 | 142 | 1.78e-13 | 69.3 |
MS.gene026536.t1 | MTR_6g011860 | 32.317 | 164 | 84 | 8 | 4 | 147 | 15 | 171 | 1.79e-13 | 69.7 |
MS.gene026536.t1 | MTR_1g096430 | 32.164 | 171 | 93 | 10 | 2 | 158 | 5 | 166 | 3.15e-13 | 68.6 |
MS.gene026536.t1 | MTR_8g023860 | 31.373 | 153 | 89 | 5 | 4 | 147 | 12 | 157 | 3.48e-13 | 68.9 |
MS.gene026536.t1 | MTR_2g079990 | 31.073 | 177 | 97 | 8 | 4 | 166 | 16 | 181 | 8.60e-13 | 67.4 |
MS.gene026536.t1 | MTR_4g075980 | 33.775 | 151 | 83 | 7 | 6 | 147 | 17 | 159 | 1.46e-12 | 66.2 |
MS.gene026536.t1 | MTR_3g109340 | 30.769 | 156 | 88 | 6 | 4 | 147 | 22 | 169 | 1.75e-12 | 66.6 |
MS.gene026536.t1 | MTR_8g093580 | 30.380 | 158 | 93 | 6 | 1 | 147 | 3 | 154 | 1.91e-12 | 66.6 |
MS.gene026536.t1 | MTR_7g097090 | 32.051 | 156 | 87 | 7 | 2 | 147 | 8 | 154 | 2.84e-12 | 65.5 |
MS.gene026536.t1 | MTR_8g059170 | 33.125 | 160 | 80 | 8 | 4 | 147 | 14 | 162 | 4.30e-12 | 65.1 |
MS.gene026536.t1 | MTR_3g109340 | 30.968 | 155 | 88 | 7 | 4 | 147 | 22 | 168 | 4.53e-12 | 65.5 |
MS.gene026536.t1 | MTR_2g068920 | 35.821 | 134 | 75 | 7 | 6 | 133 | 23 | 151 | 8.36e-12 | 63.9 |
MS.gene026536.t1 | MTR_2g068880 | 31.928 | 166 | 84 | 8 | 6 | 147 | 24 | 184 | 8.76e-12 | 64.3 |
MS.gene026536.t1 | MTR_2157s0010 | 29.412 | 170 | 83 | 9 | 4 | 147 | 8 | 166 | 1.50e-11 | 63.2 |
MS.gene026536.t1 | MTR_2g079990 | 33.813 | 139 | 74 | 6 | 4 | 135 | 16 | 143 | 2.80e-11 | 63.2 |
MS.gene026536.t1 | MTR_6g012670 | 28.994 | 169 | 94 | 8 | 4 | 155 | 20 | 179 | 5.69e-11 | 62.0 |
MS.gene026536.t1 | MTR_7g085220 | 27.381 | 168 | 90 | 6 | 4 | 147 | 8 | 167 | 5.87e-11 | 62.0 |
MS.gene026536.t1 | MTR_8g099750 | 33.094 | 139 | 81 | 5 | 1 | 135 | 11 | 141 | 6.17e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026536.t1 | AT3G49530 | 32.292 | 192 | 109 | 8 | 1 | 179 | 10 | 193 | 1.67e-19 | 87.4 |
MS.gene026536.t1 | AT3G49530 | 32.292 | 192 | 109 | 8 | 1 | 179 | 10 | 193 | 1.72e-19 | 87.0 |
MS.gene026536.t1 | AT3G10490 | 35.465 | 172 | 89 | 7 | 4 | 159 | 27 | 192 | 2.02e-17 | 79.0 |
MS.gene026536.t1 | AT5G24590 | 35.625 | 160 | 83 | 7 | 1 | 147 | 10 | 162 | 4.47e-17 | 80.5 |
MS.gene026536.t1 | AT4G17980 | 36.250 | 160 | 81 | 8 | 2 | 146 | 4 | 157 | 5.34e-17 | 78.6 |
MS.gene026536.t1 | AT4G36160 | 32.530 | 166 | 80 | 8 | 4 | 151 | 14 | 165 | 5.99e-17 | 79.7 |
MS.gene026536.t1 | AT1G69490 | 32.515 | 163 | 83 | 7 | 2 | 147 | 7 | 159 | 6.41e-17 | 78.2 |
MS.gene026536.t1 | AT4G36160 | 32.530 | 166 | 80 | 8 | 4 | 151 | 10 | 161 | 6.64e-17 | 79.3 |
MS.gene026536.t1 | AT4G36160 | 32.530 | 166 | 80 | 8 | 4 | 151 | 10 | 161 | 6.64e-17 | 79.3 |
MS.gene026536.t1 | AT1G33060 | 34.545 | 165 | 83 | 7 | 1 | 150 | 21 | 175 | 7.93e-17 | 79.7 |
MS.gene026536.t1 | AT1G33060 | 34.545 | 165 | 83 | 7 | 1 | 150 | 21 | 175 | 8.18e-17 | 79.7 |
MS.gene026536.t1 | AT5G04410 | 33.544 | 158 | 88 | 5 | 1 | 147 | 6 | 157 | 1.10e-16 | 79.3 |
MS.gene026536.t1 | AT4G17980 | 36.250 | 160 | 81 | 8 | 2 | 146 | 4 | 157 | 1.20e-16 | 77.8 |
MS.gene026536.t1 | AT5G64530 | 36.364 | 132 | 70 | 4 | 4 | 135 | 3 | 120 | 1.21e-16 | 75.1 |
MS.gene026536.t1 | AT5G08790 | 31.604 | 212 | 110 | 9 | 4 | 192 | 7 | 206 | 1.37e-16 | 77.4 |
MS.gene026536.t1 | AT2G27300 | 33.333 | 150 | 89 | 6 | 1 | 146 | 11 | 153 | 1.67e-16 | 77.8 |
MS.gene026536.t1 | AT5G64530 | 37.121 | 132 | 69 | 5 | 4 | 135 | 3 | 120 | 2.46e-16 | 75.1 |
MS.gene026536.t1 | AT3G17730 | 32.911 | 158 | 83 | 8 | 4 | 147 | 6 | 154 | 2.69e-16 | 76.3 |
MS.gene026536.t1 | AT3G10490 | 35.465 | 172 | 89 | 7 | 4 | 159 | 27 | 192 | 5.36e-16 | 77.0 |
MS.gene026536.t1 | AT5G46590 | 34.591 | 159 | 83 | 7 | 2 | 146 | 4 | 155 | 7.03e-16 | 75.9 |
MS.gene026536.t1 | AT1G26870 | 35.227 | 176 | 86 | 8 | 3 | 157 | 15 | 183 | 8.05e-16 | 76.6 |
MS.gene026536.t1 | AT3G10480 | 33.690 | 187 | 95 | 9 | 4 | 172 | 27 | 202 | 8.37e-16 | 76.6 |
MS.gene026536.t1 | AT4G35580 | 33.951 | 162 | 88 | 8 | 1 | 150 | 6 | 160 | 1.05e-15 | 76.6 |
MS.gene026536.t1 | AT4G35580 | 33.951 | 162 | 88 | 8 | 1 | 150 | 6 | 160 | 1.07e-15 | 76.6 |
MS.gene026536.t1 | AT4G35580 | 33.951 | 162 | 88 | 8 | 1 | 150 | 6 | 160 | 1.15e-15 | 76.3 |
MS.gene026536.t1 | AT2G43000 | 34.615 | 156 | 78 | 8 | 6 | 147 | 20 | 165 | 1.33e-15 | 74.7 |
MS.gene026536.t1 | AT3G10480 | 33.871 | 186 | 95 | 10 | 4 | 172 | 27 | 201 | 2.12e-15 | 75.5 |
MS.gene026536.t1 | AT1G54330 | 35.526 | 152 | 84 | 6 | 4 | 147 | 6 | 151 | 8.03e-15 | 72.8 |
MS.gene026536.t1 | AT1G32510 | 32.716 | 162 | 88 | 6 | 2 | 146 | 4 | 161 | 9.15e-15 | 72.4 |
MS.gene026536.t1 | AT2G24430 | 32.692 | 156 | 85 | 7 | 4 | 147 | 16 | 163 | 1.95e-14 | 72.0 |
MS.gene026536.t1 | AT2G24430 | 32.692 | 156 | 85 | 7 | 4 | 147 | 16 | 163 | 1.95e-14 | 72.0 |
MS.gene026536.t1 | AT3G44290 | 31.034 | 145 | 89 | 6 | 6 | 146 | 16 | 153 | 2.36e-14 | 70.5 |
MS.gene026536.t1 | AT5G22290 | 32.877 | 146 | 86 | 7 | 6 | 146 | 23 | 161 | 2.60e-14 | 71.6 |
MS.gene026536.t1 | AT5G63790 | 31.953 | 169 | 86 | 7 | 4 | 154 | 50 | 207 | 3.29e-14 | 71.2 |
MS.gene026536.t1 | AT5G63790 | 31.953 | 169 | 86 | 7 | 4 | 154 | 60 | 217 | 4.26e-14 | 70.9 |
MS.gene026536.t1 | AT5G46590 | 34.752 | 141 | 79 | 6 | 2 | 136 | 4 | 137 | 4.93e-14 | 70.5 |
MS.gene026536.t1 | AT4G27410 | 32.911 | 158 | 81 | 8 | 4 | 147 | 14 | 160 | 5.71e-14 | 70.5 |
MS.gene026536.t1 | AT3G44290 | 31.034 | 145 | 89 | 6 | 6 | 146 | 16 | 153 | 8.91e-14 | 70.1 |
MS.gene026536.t1 | AT2G33480 | 34.194 | 155 | 78 | 7 | 4 | 147 | 15 | 156 | 1.49e-13 | 68.9 |
MS.gene026536.t1 | AT3G12910 | 28.814 | 177 | 83 | 9 | 2 | 147 | 19 | 183 | 2.30e-13 | 68.9 |
MS.gene026536.t1 | AT2G33480 | 33.758 | 157 | 78 | 7 | 4 | 147 | 15 | 158 | 2.37e-13 | 68.2 |
MS.gene026536.t1 | AT4G27410 | 33.333 | 171 | 80 | 10 | 4 | 147 | 14 | 177 | 2.41e-13 | 68.9 |
MS.gene026536.t1 | AT5G39610 | 32.484 | 157 | 85 | 8 | 4 | 147 | 20 | 168 | 3.22e-13 | 68.2 |
MS.gene026536.t1 | AT4G10350 | 32.298 | 161 | 81 | 8 | 4 | 147 | 9 | 158 | 3.88e-13 | 68.6 |
MS.gene026536.t1 | AT5G13180 | 33.117 | 154 | 84 | 6 | 4 | 147 | 14 | 158 | 5.22e-13 | 67.0 |
MS.gene026536.t1 | AT5G66300 | 30.675 | 163 | 80 | 8 | 4 | 147 | 12 | 160 | 5.95e-13 | 67.4 |
MS.gene026536.t1 | AT3G29035 | 34.328 | 134 | 76 | 6 | 4 | 133 | 24 | 149 | 7.29e-13 | 67.4 |
MS.gene026536.t1 | AT1G32870 | 36.496 | 137 | 75 | 6 | 4 | 136 | 10 | 138 | 1.06e-12 | 67.8 |
MS.gene026536.t1 | AT1G32870 | 36.496 | 137 | 75 | 6 | 4 | 136 | 10 | 138 | 1.21e-12 | 67.4 |
MS.gene026536.t1 | AT1G32870 | 36.496 | 137 | 75 | 6 | 4 | 136 | 46 | 174 | 1.44e-12 | 67.4 |
MS.gene026536.t1 | AT3G04070 | 30.178 | 169 | 87 | 7 | 2 | 147 | 8 | 168 | 2.18e-12 | 66.2 |
MS.gene026536.t1 | AT3G15500 | 31.847 | 157 | 84 | 7 | 4 | 147 | 14 | 160 | 4.74e-12 | 65.1 |
MS.gene026536.t1 | AT3G04070 | 32.168 | 143 | 80 | 5 | 2 | 135 | 8 | 142 | 4.86e-12 | 65.5 |
MS.gene026536.t1 | AT1G52890 | 32.298 | 161 | 78 | 8 | 4 | 147 | 14 | 160 | 7.79e-12 | 64.3 |
MS.gene026536.t1 | AT1G61110 | 33.333 | 138 | 77 | 5 | 4 | 135 | 16 | 144 | 1.71e-11 | 63.5 |
MS.gene026536.t1 | AT1G76420 | 27.950 | 161 | 88 | 6 | 4 | 148 | 22 | 170 | 1.81e-11 | 63.5 |
MS.gene026536.t1 | AT1G34190 | 30.968 | 155 | 86 | 6 | 6 | 147 | 18 | 164 | 2.07e-11 | 63.9 |
MS.gene026536.t1 | AT5G61430 | 31.210 | 157 | 87 | 7 | 4 | 147 | 16 | 164 | 2.61e-11 | 63.2 |
MS.gene026536.t1 | AT5G07680 | 31.847 | 157 | 86 | 7 | 4 | 147 | 17 | 165 | 3.78e-11 | 62.4 |
MS.gene026536.t1 | AT5G07680 | 31.847 | 157 | 86 | 7 | 4 | 147 | 3 | 151 | 5.12e-11 | 62.0 |
MS.gene026536.t1 | AT1G79580 | 31.056 | 161 | 81 | 8 | 4 | 147 | 17 | 164 | 5.35e-11 | 62.4 |
MS.gene026536.t1 | AT1G79580 | 31.056 | 161 | 81 | 8 | 4 | 147 | 17 | 164 | 5.35e-11 | 62.4 |
MS.gene026536.t1 | AT1G79580 | 31.056 | 161 | 81 | 8 | 4 | 147 | 17 | 164 | 5.35e-11 | 62.4 |
MS.gene026536.t1 | AT1G79580 | 31.056 | 161 | 81 | 8 | 4 | 147 | 17 | 164 | 5.35e-11 | 62.4 |
MS.gene026536.t1 | AT1G79580 | 31.056 | 161 | 81 | 8 | 4 | 147 | 17 | 164 | 5.35e-11 | 62.4 |
MS.gene026536.t1 | AT1G34180 | 33.577 | 137 | 77 | 5 | 6 | 136 | 18 | 146 | 5.73e-11 | 62.4 |
MS.gene026536.t1 | AT1G34180 | 33.577 | 137 | 77 | 5 | 6 | 136 | 18 | 146 | 8.11e-11 | 62.0 |
Find 62 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAACTTAAGCTTGCAATTA+TGG | 0.155599 | 1.1:-17293566 | MS.gene026536:CDS |
TGATGTCACTCGAAAATTTA+AGG | 0.155764 | 1.1:-17301406 | MS.gene026536:CDS |
GGCACTGCAGGACTGGATTT+TGG | 0.202792 | 1.1:-17301811 | MS.gene026536:CDS |
GCCATGCTTCCACCTGGTGC+TGG | 0.288291 | 1.1:-17302043 | MS.gene026536:CDS |
CCATGGTTCTGACCTCATTA+AGG | 0.288790 | 1.1:-17301948 | MS.gene026536:CDS |
TCCCTCTTTATGTTCTATCT+TGG | 0.300819 | 1.1:-17301725 | MS.gene026536:CDS |
CTGGTAGTAGTGATGGTGGT+GGG | 0.303392 | 1.1:-17301374 | MS.gene026536:CDS |
TGGAGCTGACAATGTGGTTT+TGG | 0.312073 | 1.1:-17301756 | MS.gene026536:CDS |
ATGGATCTGGGTGCAGAGTT+TGG | 0.323843 | 1.1:-17301474 | MS.gene026536:CDS |
ACTATACCATCGAAAATTGT+AGG | 0.358305 | 1.1:-17301874 | MS.gene026536:CDS |
CCATGCTTCCACCTGGTGCT+GGG | 0.413477 | 1.1:-17302042 | MS.gene026536:CDS |
TTGCCCTCCAACAATGGATC+TGG | 0.416934 | 1.1:-17301487 | MS.gene026536:CDS |
GATGTCACTCGAAAATTTAA+GGG | 0.421822 | 1.1:-17301405 | MS.gene026536:CDS |
GTATAGTAGAAGGAGGTATA+CGG | 0.424556 | 1.1:+17301890 | None:intergenic |
GAGAGACGGCACTGCAGGAC+TGG | 0.427179 | 1.1:-17301818 | MS.gene026536:CDS |
GCTGGTAGTAGTGATGGTGG+TGG | 0.451886 | 1.1:-17301375 | MS.gene026536:CDS |
GCTGGGGCTGGTAGTAGTGA+TGG | 0.454213 | 1.1:-17301381 | MS.gene026536:CDS |
CCTACTGACGAGATACTTGT+TGG | 0.458463 | 1.1:-17302013 | MS.gene026536:CDS |
TCACATTTCACATATATTCA+AGG | 0.466258 | 1.1:-17301330 | MS.gene026536:CDS |
GCAATGGCCATGCTTCCACC+TGG | 0.468009 | 1.1:-17302049 | MS.gene026536:CDS |
TGCATTGGCTGACGAGCCTC+AGG | 0.469467 | 1.1:-17301654 | MS.gene026536:intron |
AAAACACGGCACAAAACAAA+AGG | 0.470485 | 1.1:+17301513 | None:intergenic |
TACTTGTTGGCTACTACCTT+AGG | 0.477557 | 1.1:-17302000 | MS.gene026536:CDS |
GGTGGTGGGGCTGCTGAGCA+AGG | 0.481889 | 1.1:-17301360 | MS.gene026536:CDS |
CGATCGGGTCATACTCATAC+AGG | 0.485419 | 1.1:+17301918 | None:intergenic |
TACTGCTTCACTGCCAAAGT+TGG | 0.486292 | 1.1:-17301845 | MS.gene026536:CDS |
GAGGTATACGGCAATTCGAT+CGG | 0.486752 | 1.1:+17301902 | None:intergenic |
CCGTCTCTCACTGCCAACTT+TGG | 0.487719 | 1.1:+17301832 | None:intergenic |
ATTGCAAGCTTAAGTTGCTC+TGG | 0.498542 | 1.1:+17293571 | None:intergenic |
TTCCAAGATAGAACATAAAG+AGG | 0.498797 | 1.1:+17301723 | None:intergenic |
AGGACGCTGTCAGAACAAAC+TGG | 0.499874 | 1.1:-17301691 | MS.gene026536:CDS |
TGGTAGTAGTGATGGTGGTG+GGG | 0.505536 | 1.1:-17301373 | MS.gene026536:CDS |
AGGTATACGGCAATTCGATC+GGG | 0.507489 | 1.1:+17301903 | None:intergenic |
GCAGTGAGAGACGGCACTGC+AGG | 0.521491 | 1.1:-17301823 | MS.gene026536:CDS |
CCCAGCACCAGGTGGAAGCA+TGG | 0.526903 | 1.1:+17302042 | None:intergenic |
CCAACAAGTATCTCGTCAGT+AGG | 0.528725 | 1.1:+17302013 | None:intergenic |
ACCTTCTTCAACATCAGATA+AGG | 0.528743 | 1.1:+17301449 | None:intergenic |
GCACCCAGATCCATTGTTGG+AGG | 0.539944 | 1.1:+17301483 | None:intergenic |
GAACAGGTTCAGAATTTCCA+TGG | 0.547755 | 1.1:-17301965 | MS.gene026536:CDS |
TCTGCACCCAGATCCATTGT+TGG | 0.550003 | 1.1:+17301480 | None:intergenic |
CAACAAGTATCTCGTCAGTA+GGG | 0.551326 | 1.1:+17302014 | None:intergenic |
ATATATTCAAGGCTCCCTGC+AGG | 0.566277 | 1.1:-17301319 | MS.gene026536:intron |
GTAGGGAGAAACCCAGCACC+AGG | 0.574061 | 1.1:+17302031 | None:intergenic |
ACAGGTTCAGCTCCTTAATG+AGG | 0.577110 | 1.1:+17301936 | None:intergenic |
TGCCCTCCAACAATGGATCT+GGG | 0.577800 | 1.1:-17301486 | MS.gene026536:CDS |
TTCGATGGTATAGTAGAAGG+AGG | 0.587953 | 1.1:+17301883 | None:intergenic |
ATTACTCGAGACATTAATGA+TGG | 0.591026 | 1.1:-17301776 | MS.gene026536:CDS |
CACCCAGATCCATTGTTGGA+GGG | 0.600445 | 1.1:+17301484 | None:intergenic |
GGGGCTGGTAGTAGTGATGG+TGG | 0.602818 | 1.1:-17301378 | MS.gene026536:CDS |
ACTTAAGCTTGCAATTATGG+AGG | 0.614360 | 1.1:-17293563 | MS.gene026536:CDS |
ATGTCACTCGAAAATTTAAG+GGG | 0.615370 | 1.1:-17301404 | MS.gene026536:CDS |
GCCTTATCTGATGTTGAAGA+AGG | 0.619001 | 1.1:-17301450 | MS.gene026536:CDS |
TGATTGTGTTGTCTTCCACA+TGG | 0.623071 | 1.1:-17293605 | MS.gene026536:CDS |
CCAAAGTTGGCAGTGAGAGA+CGG | 0.623168 | 1.1:-17301832 | MS.gene026536:CDS |
TCCAAGATAGAACATAAAGA+GGG | 0.626576 | 1.1:+17301724 | None:intergenic |
CCTTAATGAGGTCAGAACCA+TGG | 0.626777 | 1.1:+17301948 | None:intergenic |
GTTGAAGAAGGTGATGCTGC+TGG | 0.630740 | 1.1:-17301438 | MS.gene026536:CDS |
GGGAGAAACCCAGCACCAGG+TGG | 0.653293 | 1.1:+17302034 | None:intergenic |
GATTATGTACGAGTATGCAT+TGG | 0.682043 | 1.1:-17301669 | MS.gene026536:CDS |
CTGGCGTCATAGCTTCCATG+TGG | 0.684588 | 1.1:+17293590 | None:intergenic |
TGTCACTCGAAAATTTAAGG+GGG | 0.730936 | 1.1:-17301403 | MS.gene026536:CDS |
TAATGATGGAGCTGACAATG+TGG | 0.745336 | 1.1:-17301762 | MS.gene026536:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 17293531 | 17302068 | 17293531 | ID=MS.gene026536 |
chr1.1 | mRNA | 17293531 | 17302068 | 17293531 | ID=MS.gene026536.t1;Parent=MS.gene026536 |
chr1.1 | exon | 17301655 | 17302068 | 17301655 | ID=MS.gene026536.t1.exon1;Parent=MS.gene026536.t1 |
chr1.1 | CDS | 17301655 | 17302068 | 17301655 | ID=cds.MS.gene026536.t1;Parent=MS.gene026536.t1 |
chr1.1 | exon | 17301320 | 17301538 | 17301320 | ID=MS.gene026536.t1.exon2;Parent=MS.gene026536.t1 |
chr1.1 | CDS | 17301320 | 17301538 | 17301320 | ID=cds.MS.gene026536.t1;Parent=MS.gene026536.t1 |
chr1.1 | exon | 17293531 | 17293647 | 17293531 | ID=MS.gene026536.t1.exon3;Parent=MS.gene026536.t1 |
chr1.1 | CDS | 17293531 | 17293647 | 17293531 | ID=cds.MS.gene026536.t1;Parent=MS.gene026536.t1 |
Gene Sequence |
Protein sequence |