Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026548.t1 | XP_013466543.1 | 96.4 | 302 | 11 | 0 | 1 | 302 | 60 | 361 | 4.10E-155 | 557.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026548.t1 | Q9LVI4 | 37.2 | 269 | 140 | 9 | 41 | 294 | 97 | 351 | 5.5e-23 | 109.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026548.t1 | G8A016 | 96.4 | 302 | 11 | 0 | 1 | 302 | 60 | 361 | 3.0e-155 | 557.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene026548.t1 | TF | Tify |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026548.t1 | MTR_1g031930 | 96.358 | 302 | 11 | 0 | 1 | 302 | 60 | 361 | 0.0 | 590 |
| MS.gene026548.t1 | MTR_1g031930 | 96.610 | 236 | 8 | 0 | 67 | 302 | 65 | 300 | 1.75e-162 | 454 |
| MS.gene026548.t1 | MTR_6g069870 | 32.063 | 315 | 139 | 9 | 16 | 277 | 68 | 360 | 2.85e-29 | 115 |
| MS.gene026548.t1 | MTR_6g069870 | 31.773 | 299 | 129 | 9 | 16 | 261 | 68 | 344 | 1.93e-25 | 103 |
| MS.gene026548.t1 | MTR_2g029260 | 53.571 | 112 | 45 | 1 | 108 | 219 | 5 | 109 | 1.06e-23 | 94.0 |
| MS.gene026548.t1 | MTR_6g069870 | 34.804 | 204 | 102 | 7 | 16 | 214 | 68 | 245 | 1.53e-19 | 87.8 |
| MS.gene026548.t1 | MTR_2g042900 | 30.061 | 163 | 82 | 3 | 113 | 275 | 110 | 240 | 5.47e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026548.t1 | AT3G17860 | 38.153 | 249 | 126 | 8 | 41 | 274 | 64 | 299 | 3.78e-31 | 119 |
| MS.gene026548.t1 | AT3G17860 | 38.153 | 249 | 126 | 8 | 41 | 274 | 64 | 299 | 3.78e-31 | 119 |
| MS.gene026548.t1 | AT3G17860 | 38.153 | 249 | 126 | 8 | 41 | 274 | 84 | 319 | 6.01e-31 | 119 |
| MS.gene026548.t1 | AT3G17860 | 38.153 | 249 | 126 | 8 | 41 | 274 | 97 | 332 | 7.87e-31 | 119 |
| MS.gene026548.t1 | AT1G70700 | 35.938 | 256 | 117 | 10 | 39 | 293 | 58 | 267 | 2.79e-27 | 107 |
| MS.gene026548.t1 | AT1G70700 | 34.375 | 256 | 97 | 8 | 39 | 293 | 58 | 243 | 2.19e-26 | 104 |
| MS.gene026548.t1 | AT1G70700 | 35.268 | 224 | 100 | 9 | 39 | 261 | 58 | 237 | 4.05e-22 | 94.0 |
| MS.gene026548.t1 | AT1G48500 | 32.530 | 249 | 133 | 7 | 29 | 274 | 73 | 289 | 4.15e-22 | 94.4 |
| MS.gene026548.t1 | AT1G48500 | 32.911 | 237 | 122 | 8 | 29 | 261 | 43 | 246 | 1.29e-18 | 83.6 |
| MS.gene026548.t1 | AT1G48500 | 32.911 | 237 | 122 | 8 | 29 | 261 | 73 | 276 | 1.98e-18 | 83.6 |
Find 75 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAGCAGTGATGAGTTTA+TGG | 0.220743 | 1.1:-17174721 | MS.gene026548:CDS |
| GATTTCTTGTTGAGGTTATA+TGG | 0.291399 | 1.1:+17173643 | None:intergenic |
| ATGTCTACAGGTGGACTTAT+AGG | 0.310065 | 1.1:+17174816 | None:intergenic |
| GAGCTAGATGCCTGAACTTC+AGG | 0.316257 | 1.1:+17174867 | None:intergenic |
| CCGATCGTTGGTACTGTTGC+TGG | 0.321376 | 1.1:-17175498 | MS.gene026548:CDS |
| AGAAAGTGAATTTGCTTGAT+TGG | 0.344513 | 1.1:+17175638 | None:intergenic |
| CGTTGGTACTGTTGCTGGTT+TGG | 0.366943 | 1.1:-17175493 | MS.gene026548:CDS |
| TTATCTGTTTCTTCACATAC+TGG | 0.372825 | 1.1:-17174765 | MS.gene026548:CDS |
| TCGAGCCAATGATGCTTTGC+GGG | 0.375285 | 1.1:+17174412 | None:intergenic |
| GCTTATCTGCAGCTTCAAAC+AGG | 0.376253 | 1.1:-17174896 | MS.gene026548:CDS |
| GAATTTGCTTGATTGGAAAC+TGG | 0.385359 | 1.1:+17175645 | None:intergenic |
| ATGTTAGCACCCATTGAATT+CGG | 0.406156 | 1.1:+17173604 | None:intergenic |
| AAGGCTAAAATGATATCTTC+TGG | 0.412380 | 1.1:-17176161 | None:intergenic |
| CAGGGCTCAACCTGAAGTTC+AGG | 0.416821 | 1.1:-17174877 | MS.gene026548:CDS |
| GTGGTTGCATTGACTACTTT+GGG | 0.425771 | 1.1:+17174642 | None:intergenic |
| GATATCTTCTGGTTTCATAC+AGG | 0.429332 | 1.1:-17176150 | MS.gene026548:intron |
| GGTGGTTGCATTGACTACTT+TGG | 0.451731 | 1.1:+17174641 | None:intergenic |
| AAATTCACATTGTGTTGTAC+AGG | 0.451805 | 1.1:+17175699 | None:intergenic |
| TCAGGCCCGCAAAGCATCAT+TGG | 0.453591 | 1.1:-17174417 | MS.gene026548:CDS |
| CAAGCAGATGTTGTAGGAGT+AGG | 0.457532 | 1.1:+17174678 | None:intergenic |
| GGCACAAGCCATCATGTTGT+TGG | 0.459085 | 1.1:-17174928 | MS.gene026548:CDS |
| TGCACAAATGCCGAATTCAA+TGG | 0.463346 | 1.1:-17173614 | MS.gene026548:CDS |
| AGGACTTGAAATACCAGAGC+AGG | 0.472355 | 1.1:+17174788 | None:intergenic |
| CTGCTACTTGAGCCACTCCC+TGG | 0.474711 | 1.1:+17174735 | None:intergenic |
| TGTTATCCTTGGTTTGCTAC+CGG | 0.482361 | 1.1:+17173553 | None:intergenic |
| ACTTTGCAAGCAGATGTTGT+AGG | 0.484196 | 1.1:+17174672 | None:intergenic |
| TCACATACTGGTCCACAGCC+AGG | 0.488582 | 1.1:-17174753 | MS.gene026548:CDS |
| CTTGAGCCACTCCCTGGCTG+TGG | 0.494035 | 1.1:+17174741 | None:intergenic |
| GTATGTGAAGAAACAGATAA+AGG | 0.494684 | 1.1:+17174768 | None:intergenic |
| ATCATGTTGTTGGCTGGAAG+TGG | 0.494803 | 1.1:-17174918 | MS.gene026548:CDS |
| ATCGAGCCAATGATGCTTTG+CGG | 0.499003 | 1.1:+17174411 | None:intergenic |
| CAAGCCATCATGTTGTTGGC+TGG | 0.503763 | 1.1:-17174924 | MS.gene026548:CDS |
| AATGCGAAGCAATCACTACT+TGG | 0.504587 | 1.1:-17175555 | MS.gene026548:CDS |
| GAGTTACTCACTGTTATCCT+TGG | 0.504866 | 1.1:+17173542 | None:intergenic |
| GCACAAATGCCGAATTCAAT+GGG | 0.507087 | 1.1:-17173613 | MS.gene026548:CDS |
| GCAACCACCATGGTTCCATC+AGG | 0.516533 | 1.1:-17174627 | MS.gene026548:intron |
| CATCCTCAGATTTCTTGTTG+AGG | 0.517588 | 1.1:+17173635 | None:intergenic |
| ACTGAATGAGGTGCTGTAAC+CGG | 0.521363 | 1.1:+17175525 | None:intergenic |
| AACATGGTAAGTTGAGGAGC+AGG | 0.523147 | 1.1:+17175353 | None:intergenic |
| AAATTCGCATCAGGTGATGA+TGG | 0.528192 | 1.1:-17174843 | MS.gene026548:CDS |
| GAGCAGGGTGGTATGTCTAC+AGG | 0.528533 | 1.1:+17174804 | None:intergenic |
| CATTCAGTTCTTCCGATCGT+TGG | 0.534965 | 1.1:-17175510 | MS.gene026548:CDS |
| TCTAGCTCGAAATTCGCATC+AGG | 0.536374 | 1.1:-17174852 | MS.gene026548:CDS |
| ATCACTACTTGGTGGATCAC+CGG | 0.541418 | 1.1:-17175544 | MS.gene026548:CDS |
| CACTAGTACTGCTAATATGC+CGG | 0.542872 | 1.1:-17173572 | MS.gene026548:CDS |
| AGTTGAGGAGCAGGTGCAGA+TGG | 0.548573 | 1.1:+17175362 | None:intergenic |
| GTAGACATACCACCCTGCTC+TGG | 0.550254 | 1.1:-17174801 | MS.gene026548:CDS |
| AAGCAGATGTTGTAGGAGTA+GGG | 0.553445 | 1.1:+17174679 | None:intergenic |
| CACAGTACCGCCATAAAACA+TGG | 0.558159 | 1.1:+17175337 | None:intergenic |
| GCGAAGCAATCACTACTTGG+TGG | 0.562781 | 1.1:-17175552 | MS.gene026548:CDS |
| CAATGATATCACTCCTGAGA+AGG | 0.574823 | 1.1:-17175306 | MS.gene026548:intron |
| ACTGGTCCACAGCCAGGGAG+TGG | 0.579269 | 1.1:-17174747 | MS.gene026548:CDS |
| ATTAGCAGTACTAGTGGTCG+CGG | 0.581937 | 1.1:+17173579 | None:intergenic |
| CACATACTGGTCCACAGCCA+GGG | 0.588678 | 1.1:-17174752 | MS.gene026548:CDS |
| CTTATCTGCAGCTTCAAACA+GGG | 0.597255 | 1.1:-17174895 | MS.gene026548:CDS |
| TCAAGCAAATTCACTTTCTG+CGG | 0.601727 | 1.1:-17175634 | MS.gene026548:CDS |
| AATGATGCTTTGCGGGCCTG+AGG | 0.613755 | 1.1:+17174419 | None:intergenic |
| ACTTCCAGCCAACAACATGA+TGG | 0.615633 | 1.1:+17174920 | None:intergenic |
| CGGCATATTAGCAGTACTAG+TGG | 0.617445 | 1.1:+17173573 | None:intergenic |
| TAGAACTCTTTCAAACACGA+TGG | 0.630111 | 1.1:-17175756 | MS.gene026548:CDS |
| TCTTTCAAACACGATGGACA+AGG | 0.634289 | 1.1:-17175750 | MS.gene026548:CDS |
| GGACTTGAAATACCAGAGCA+GGG | 0.635730 | 1.1:+17174789 | None:intergenic |
| CCAGCAACAGTACCAACGAT+CGG | 0.636094 | 1.1:+17175498 | None:intergenic |
| CCATAAAACATGGTAAGTTG+AGG | 0.638856 | 1.1:+17175347 | None:intergenic |
| ATGGCTGCTAAAACATCTAG+AGG | 0.639805 | 1.1:-17174702 | MS.gene026548:CDS |
| ACGATCGGAAGAACTGAATG+AGG | 0.643920 | 1.1:+17175513 | None:intergenic |
| CAGGGTGGTATGTCTACAGG+TGG | 0.644694 | 1.1:+17174807 | None:intergenic |
| TTGCTGGTTTGGTTGAACCA+TGG | 0.654058 | 1.1:-17175482 | MS.gene026548:intron |
| TAACCTCAACAAGAAATCTG+AGG | 0.657118 | 1.1:-17173638 | MS.gene026548:CDS |
| TTACATACCTGATGGAACCA+TGG | 0.681302 | 1.1:+17174620 | None:intergenic |
| AATATGCCGGTAGCAAACCA+AGG | 0.684244 | 1.1:-17173559 | MS.gene026548:CDS |
| AGTAGTCAATGCAACCACCA+TGG | 0.687562 | 1.1:-17174637 | MS.gene026548:CDS |
| TTCAAACACGATGGACAAGG+TGG | 0.707235 | 1.1:-17175747 | MS.gene026548:CDS |
| CTTGAAATACCAGAGCAGGG+TGG | 0.775660 | 1.1:+17174792 | None:intergenic |
| CATACCTGATGGAACCATGG+TGG | 0.816498 | 1.1:+17174623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAAGTTATAATAAATAT+AGG | - | chr1.1:17175161-17175180 | MS.gene026548:intron | 10.0% |
| !!! | AATTATAAGATTTATTTTCA+CGG | - | chr1.1:17175876-17175895 | MS.gene026548:intron | 10.0% |
| !!! | TTTGTATTTAATGATTTTAA+TGG | - | chr1.1:17175235-17175254 | MS.gene026548:intron | 10.0% |
| !!! | ATAAATCTTATAATTTGTGT+TGG | + | chr1.1:17175871-17175890 | None:intergenic | 15.0% |
| !!! | ATTCATATGAAATTGATTTT+CGG | - | chr1.1:17173801-17173820 | MS.gene026548:intron | 15.0% |
| !!! | CTAGATGTATAAAATTATTT+TGG | + | chr1.1:17175992-17176011 | None:intergenic | 15.0% |
| !!! | TTAATTATACAAGTCTTTTT+AGG | - | chr1.1:17173773-17173792 | MS.gene026548:intron | 15.0% |
| !! | AAAACAAATTCACATTTAGA+GGG | - | chr1.1:17173685-17173704 | MS.gene026548:intron | 20.0% |
| !! | AAACATCCTAAAATTATGTT+CGG | + | chr1.1:17173829-17173848 | None:intergenic | 20.0% |
| !! | CCTAATAAATCTTTATAAGT+GGG | - | chr1.1:17175495-17175514 | MS.gene026548:CDS | 20.0% |
| !! | TAAAACAAATTCACATTTAG+AGG | - | chr1.1:17173684-17173703 | MS.gene026548:intron | 20.0% |
| !! | TGTTAAAAAATTGTGAAGTT+AGG | - | chr1.1:17173614-17173633 | MS.gene026548:CDS | 20.0% |
| !!! | AAAAATCATCTTGTAACTTT+TGG | - | chr1.1:17174110-17174129 | MS.gene026548:intron | 20.0% |
| !!! | AAGTTACAAGATGATTTTTT+AGG | + | chr1.1:17174109-17174128 | None:intergenic | 20.0% |
| !!! | GATGTATAAAATTATTTTGG+AGG | + | chr1.1:17175989-17176008 | None:intergenic | 20.0% |
| !!! | TGAAAAAGTGTAAATAAAGT+GGG | - | chr1.1:17175803-17175822 | MS.gene026548:intron | 20.0% |
| ! | AAAAACAGAAATTGAGAGAA+AGG | + | chr1.1:17173594-17173613 | None:intergenic | 25.0% |
| ! | AAAGGTTAGATCTAATAAAC+GGG | - | chr1.1:17175337-17175356 | MS.gene026548:CDS | 25.0% |
| ! | AAATCAATCCAAGTAGAATA+GGG | + | chr1.1:17174449-17174468 | None:intergenic | 25.0% |
| ! | ATTCAAAAGTCTTTATAGGT+GGG | - | chr1.1:17175595-17175614 | MS.gene026548:CDS | 25.0% |
| ! | CATTGAACCAATTTATTTAG+AGG | + | chr1.1:17175937-17175956 | None:intergenic | 25.0% |
| ! | CCCACTTATAAAGATTTATT+AGG | + | chr1.1:17175498-17175517 | None:intergenic | 25.0% |
| ! | GAAAGGTTAGATCTAATAAA+CGG | - | chr1.1:17175336-17175355 | MS.gene026548:CDS | 25.0% |
| ! | GCCTAATAAATCTTTATAAG+TGG | - | chr1.1:17175494-17175513 | MS.gene026548:CDS | 25.0% |
| ! | GTATGATTTCCTTTATACTT+GGG | + | chr1.1:17174689-17174708 | None:intergenic | 25.0% |
| ! | TAAATCAATCCAAGTAGAAT+AGG | + | chr1.1:17174450-17174469 | None:intergenic | 25.0% |
| ! | TAAATGGTAAGAACAAACAA+TGG | + | chr1.1:17173933-17173952 | None:intergenic | 25.0% |
| ! | TGTATGATTTCCTTTATACT+TGG | + | chr1.1:17174690-17174709 | None:intergenic | 25.0% |
| ! | TTGTCATAAACTAACTCATT+AGG | - | chr1.1:17174571-17174590 | MS.gene026548:intron | 25.0% |
| !! | AATAAATTGGTTCAATGTGT+TGG | - | chr1.1:17175940-17175959 | MS.gene026548:intron | 25.0% |
| !! | ACCTATAAAGACTTTTGAAT+GGG | + | chr1.1:17175595-17175614 | None:intergenic | 25.0% |
| !! | CTGAAAAAGTGTAAATAAAG+TGG | - | chr1.1:17175802-17175821 | MS.gene026548:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | - | chr1.1:17174663-17174682 | MS.gene026548:CDS | 25.0% |
| !!! | AAAGATGATAACTTGTTGTA+TGG | + | chr1.1:17175387-17175406 | None:intergenic | 25.0% |
| !!! | CACTTTATTTACACTTTTTC+AGG | + | chr1.1:17175804-17175823 | None:intergenic | 25.0% |
| AAATTCACATTGTGTTGTAC+AGG | + | chr1.1:17174011-17174030 | None:intergenic | 30.0% | |
| AATAACCTGAAAACAGCTTA+TGG | + | chr1.1:17174553-17174572 | None:intergenic | 30.0% | |
| AATCAATCCAAGTAGAATAG+GGG | + | chr1.1:17174448-17174467 | None:intergenic | 30.0% | |
| AGGTTTGATCAATTGTATTC+AGG | - | chr1.1:17174758-17174777 | MS.gene026548:CDS | 30.0% | |
| ATATATTCCCCTATTCTACT+TGG | - | chr1.1:17174438-17174457 | MS.gene026548:intron | 30.0% | |
| CATTCAAAAGTCTTTATAGG+TGG | - | chr1.1:17175594-17175613 | MS.gene026548:CDS | 30.0% | |
| GAATAACTCCATACTACAAA+AGG | + | chr1.1:17175193-17175212 | None:intergenic | 30.0% | |
| GACCATCTTATAATTTGAAG+TGG | + | chr1.1:17175566-17175585 | None:intergenic | 30.0% | |
| GATTTCTTGTTGAGGTTATA+TGG | + | chr1.1:17176067-17176086 | None:intergenic | 30.0% | |
| GCATTGAACTAAAATTACCA+TGG | + | chr1.1:17174245-17174264 | None:intergenic | 30.0% | |
| GGTCAACACAAATTATAAGA+TGG | - | chr1.1:17175661-17175680 | MS.gene026548:CDS | 30.0% | |
| GTATGTGAAGAAACAGATAA+AGG | + | chr1.1:17174942-17174961 | None:intergenic | 30.0% | |
| TCGTTTGCCTCTAAATAAAT+TGG | - | chr1.1:17175927-17175946 | MS.gene026548:intron | 30.0% | |
| TTATACTGTTACATACCTGA+TGG | + | chr1.1:17175098-17175117 | None:intergenic | 30.0% | |
| ! | ACTTTTGGTCAGAATATGAA+CGG | - | chr1.1:17174125-17174144 | MS.gene026548:intron | 30.0% |
| ! | AGAAAGTGAATTTGCTTGAT+TGG | + | chr1.1:17174072-17174091 | None:intergenic | 30.0% |
| ! | CACCTATAAAGACTTTTGAA+TGG | + | chr1.1:17175596-17175615 | None:intergenic | 30.0% |
| ! | TTATCTGTTTCTTCACATAC+TGG | - | chr1.1:17174942-17174961 | MS.gene026548:intron | 30.0% |
| !! | GATAACTTGTTGTATGGAAA+AGG | + | chr1.1:17175381-17175400 | None:intergenic | 30.0% |
| !! | GTGTTTGAAAGAGTTCTAAA+TGG | + | chr1.1:17173949-17173968 | None:intergenic | 30.0% |
| !! | TTTTGACTGAAGTTAAGCAT+AGG | - | chr1.1:17174738-17174757 | MS.gene026548:CDS | 30.0% |
| !!! | ACAAGATGATTTTTTAGGAG+CGG | + | chr1.1:17174104-17174123 | None:intergenic | 30.0% |
| AACAAACAATGGAAGGAAGT+GGG | + | chr1.1:17173922-17173941 | None:intergenic | 35.0% | |
| AAGTAGCAGTGATGAGTTTA+TGG | - | chr1.1:17174986-17175005 | MS.gene026548:intron | 35.0% | |
| AGAGCCTATCCAAAATTTGT+TGG | - | chr1.1:17175692-17175711 | MS.gene026548:CDS | 35.0% | |
| AGGACAACATTCAGTTAATC+AGG | - | chr1.1:17173634-17173653 | MS.gene026548:CDS | 35.0% | |
| AGGCTATATCACATCTGATT+TGG | + | chr1.1:17175784-17175803 | None:intergenic | 35.0% | |
| AGTGCTTATGATAGTAGACA+AGG | + | chr1.1:17174478-17174497 | None:intergenic | 35.0% | |
| ATATAACTCACCTTACAAGC+CGG | - | chr1.1:17175520-17175539 | MS.gene026548:CDS | 35.0% | |
| ATGTTAGCACCCATTGAATT+CGG | + | chr1.1:17176106-17176125 | None:intergenic | 35.0% | |
| CAATGCTTGAGATGTTTCTT+AGG | - | chr1.1:17174259-17174278 | MS.gene026548:intron | 35.0% | |
| CCATAAAACATGGTAAGTTG+AGG | + | chr1.1:17174363-17174382 | None:intergenic | 35.0% | |
| CTAGAGTGTGATCCAATAAA+GGG | + | chr1.1:17175722-17175741 | None:intergenic | 35.0% | |
| CTAGTTCAACCTTACAAAAC+CGG | + | chr1.1:17175542-17175561 | None:intergenic | 35.0% | |
| GCCCATTCAAAAGTCTTTAT+AGG | - | chr1.1:17175591-17175610 | MS.gene026548:CDS | 35.0% | |
| GGCCACTTCAAATTATAAGA+TGG | - | chr1.1:17175561-17175580 | MS.gene026548:CDS | 35.0% | |
| GGCTATATCACATCTGATTT+GGG | + | chr1.1:17175783-17175802 | None:intergenic | 35.0% | |
| TAACCTCAACAAGAAATCTG+AGG | - | chr1.1:17176069-17176088 | MS.gene026548:intron | 35.0% | |
| TAGAACTCTTTCAAACACGA+TGG | - | chr1.1:17173951-17173970 | MS.gene026548:intron | 35.0% | |
| TCAAGCAAATTCACTTTCTG+CGG | - | chr1.1:17174073-17174092 | MS.gene026548:intron | 35.0% | |
| TGAGAGAAAAATACCTTCTC+AGG | + | chr1.1:17174417-17174436 | None:intergenic | 35.0% | |
| TGGTAAGAACAAACAATGGA+AGG | + | chr1.1:17173929-17173948 | None:intergenic | 35.0% | |
| ! | AATGAGAGTATGAGACTGTT+TGG | - | chr1.1:17174498-17174517 | MS.gene026548:intron | 35.0% |
| ! | AATTGGTTCAATGTGTTGGA+AGG | - | chr1.1:17175944-17175963 | MS.gene026548:intron | 35.0% |
| ! | ATTTTATGCAGCTATACCTC+AGG | - | chr1.1:17175272-17175291 | MS.gene026548:intron | 35.0% |
| ! | CAACTTACCATGTTTTATGG+CGG | - | chr1.1:17174363-17174382 | MS.gene026548:intron | 35.0% |
| ! | CATGTGTTTCTGTCAATACA+GGG | - | chr1.1:17176027-17176046 | MS.gene026548:intron | 35.0% |
| ! | CCTCAACTTACCATGTTTTA+TGG | - | chr1.1:17174360-17174379 | MS.gene026548:intron | 35.0% |
| ! | GAATTTGCTTGATTGGAAAC+TGG | + | chr1.1:17174065-17174084 | None:intergenic | 35.0% |
| ! | GAGATGTTTCTTAGGAGTTT+TGG | - | chr1.1:17174267-17174286 | MS.gene026548:intron | 35.0% |
| ! | GAGCCTATCCAAAATTTGTT+GGG | - | chr1.1:17175693-17175712 | MS.gene026548:CDS | 35.0% |
| ! | TCATGTGTTTCTGTCAATAC+AGG | - | chr1.1:17176026-17176045 | MS.gene026548:intron | 35.0% |
| ! | TCGGATCCGAACATAATTTT+AGG | - | chr1.1:17173820-17173839 | MS.gene026548:intron | 35.0% |
| ! | TCTAGAGTGTGATCCAATAA+AGG | + | chr1.1:17175723-17175742 | None:intergenic | 35.0% |
| ! | TTTTCAGTGCAATCTGCTTA+CGG | - | chr1.1:17173744-17173763 | MS.gene026548:intron | 35.0% |
| !! | GATATCTTCTGGTTTCATAC+AGG | - | chr1.1:17173557-17173576 | MS.gene026548:CDS | 35.0% |
| AAATTCGCATCAGGTGATGA+TGG | - | chr1.1:17174864-17174883 | MS.gene026548:CDS | 40.0% | |
| AAGCAGATGTTGTAGGAGTA+GGG | + | chr1.1:17175031-17175050 | None:intergenic | 40.0% | |
| AATGCGAAGCAATCACTACT+TGG | - | chr1.1:17174152-17174171 | MS.gene026548:intron | 40.0% | |
| ACTTTGCAAGCAGATGTTGT+AGG | + | chr1.1:17175038-17175057 | None:intergenic | 40.0% | |
| ATGGCTGCTAAAACATCTAG+AGG | - | chr1.1:17175005-17175024 | MS.gene026548:intron | 40.0% | |
| ATTCACATTTAGAGGGTCGT+TGG | - | chr1.1:17173692-17173711 | MS.gene026548:intron | 40.0% | |
| CAAAAGTCTTTATAGGTGGG+AGG | - | chr1.1:17175598-17175617 | MS.gene026548:CDS | 40.0% | |
| CAAACAAGGCCCAAGTATAA+AGG | - | chr1.1:17174677-17174696 | MS.gene026548:CDS | 40.0% | |
| CAATGATATCACTCCTGAGA+AGG | - | chr1.1:17174401-17174420 | MS.gene026548:CDS | 40.0% | |
| CACTAGTACTGCTAATATGC+CGG | - | chr1.1:17176135-17176154 | MS.gene026548:intron | 40.0% | |
| CACTCTAGATGTCAAGTTCA+TGG | - | chr1.1:17175734-17175753 | MS.gene026548:CDS | 40.0% | |
| CATCCTCAGATTTCTTGTTG+AGG | + | chr1.1:17176075-17176094 | None:intergenic | 40.0% | |
| CTTATCTGCAGCTTCAAACA+GGG | - | chr1.1:17174812-17174831 | MS.gene026548:CDS | 40.0% | |
| GAACAAACAATGGAAGGAAG+TGG | + | chr1.1:17173923-17173942 | None:intergenic | 40.0% | |
| GCACAAATGCCGAATTCAAT+GGG | - | chr1.1:17176094-17176113 | MS.gene026548:intron | 40.0% | |
| GCATACATCACCTTACAAGT+CGG | - | chr1.1:17175620-17175639 | MS.gene026548:CDS | 40.0% | |
| TCTTTCAAACACGATGGACA+AGG | - | chr1.1:17173957-17173976 | MS.gene026548:intron | 40.0% | |
| TGCACAAATGCCGAATTCAA+TGG | - | chr1.1:17176093-17176112 | MS.gene026548:intron | 40.0% | |
| TTACATACCTGATGGAACCA+TGG | + | chr1.1:17175090-17175109 | None:intergenic | 40.0% | |
| TTCAATGTGTTGGAAGGAAG+AGG | - | chr1.1:17175950-17175969 | MS.gene026548:intron | 40.0% | |
| TTTGGAGAGCTTATCGAATC+AGG | - | chr1.1:17174516-17174535 | MS.gene026548:intron | 40.0% | |
| ! | ATGTCTACAGGTGGACTTAT+AGG | + | chr1.1:17174894-17174913 | None:intergenic | 40.0% |
| ! | GGATGCATCCTTTTGTAGTA+TGG | - | chr1.1:17175182-17175201 | MS.gene026548:intron | 40.0% |
| ! | TCGCCCAACAAATTTTGGAT+AGG | + | chr1.1:17175699-17175718 | None:intergenic | 40.0% |
| !! | CGGTTTTGTAAGGTTGAACT+AGG | - | chr1.1:17175540-17175559 | MS.gene026548:CDS | 40.0% |
| !! | CTTTATACTTGGGCCTTGTT+TGG | + | chr1.1:17174679-17174698 | None:intergenic | 40.0% |
| !! | GTGGTTGCATTGACTACTTT+GGG | + | chr1.1:17175068-17175087 | None:intergenic | 40.0% |
| !!! | AGCATCATTGGCTCGATTTT+TGG | - | chr1.1:17175302-17175321 | MS.gene026548:intron | 40.0% |
| AATATGCCGGTAGCAAACCA+AGG | - | chr1.1:17176148-17176167 | MS.gene026548:intron | 45.0% | |
| ACGATCGGAAGAACTGAATG+AGG | + | chr1.1:17174197-17174216 | None:intergenic | 45.0% | |
| ACTTCCAGCCAACAACATGA+TGG | + | chr1.1:17174790-17174809 | None:intergenic | 45.0% | |
| AGGACTTGAAATACCAGAGC+AGG | + | chr1.1:17174922-17174941 | None:intergenic | 45.0% | |
| AGTAGTCAATGCAACCACCA+TGG | - | chr1.1:17175070-17175089 | MS.gene026548:intron | 45.0% | |
| ATCGAGCCAATGATGCTTTG+CGG | + | chr1.1:17175299-17175318 | None:intergenic | 45.0% | |
| ATTAGCAGTACTAGTGGTCG+CGG | + | chr1.1:17176131-17176150 | None:intergenic | 45.0% | |
| CAAGCAGATGTTGTAGGAGT+AGG | + | chr1.1:17175032-17175051 | None:intergenic | 45.0% | |
| CACAGTACCGCCATAAAACA+TGG | + | chr1.1:17174373-17174392 | None:intergenic | 45.0% | |
| CATTCAGTTCTTCCGATCGT+TGG | - | chr1.1:17174197-17174216 | MS.gene026548:intron | 45.0% | |
| CGGCATATTAGCAGTACTAG+TGG | + | chr1.1:17176137-17176156 | None:intergenic | 45.0% | |
| GCTTATCTGCAGCTTCAAAC+AGG | - | chr1.1:17174811-17174830 | MS.gene026548:CDS | 45.0% | |
| GGACTTGAAATACCAGAGCA+GGG | + | chr1.1:17174921-17174940 | None:intergenic | 45.0% | |
| TCAAGTTCATGGTGTGACGA+GGG | - | chr1.1:17175745-17175764 | MS.gene026548:CDS | 45.0% | |
| TTCAAACACGATGGACAAGG+TGG | - | chr1.1:17173960-17173979 | MS.gene026548:intron | 45.0% | |
| TTTGTTGGGCGACCCTTTAT+TGG | - | chr1.1:17175707-17175726 | MS.gene026548:CDS | 45.0% | |
| ! | AACATGGTAAGTTGAGGAGC+AGG | + | chr1.1:17174357-17174376 | None:intergenic | 45.0% |
| ! | AAGGGTCGCCCAACAAATTT+TGG | + | chr1.1:17175704-17175723 | None:intergenic | 45.0% |
| ! | ACCTTACAAGTCGGCTTTGT+AGG | - | chr1.1:17175629-17175648 | MS.gene026548:CDS | 45.0% |
| ! | ATCACTACTTGGTGGATCAC+CGG | - | chr1.1:17174163-17174182 | MS.gene026548:intron | 45.0% |
| ! | ATCATGTTGTTGGCTGGAAG+TGG | - | chr1.1:17174789-17174808 | MS.gene026548:CDS | 45.0% |
| ! | CCTTACAAGTCGGCTTTGTA+GGG | - | chr1.1:17175630-17175649 | MS.gene026548:CDS | 45.0% |
| ! | TCTAGCTCGAAATTCGCATC+AGG | - | chr1.1:17174855-17174874 | MS.gene026548:CDS | 45.0% |
| !! | ACTGAATGAGGTGCTGTAAC+CGG | + | chr1.1:17174185-17174204 | None:intergenic | 45.0% |
| !! | CACGTCCATAAGCTGTTTTC+AGG | - | chr1.1:17174545-17174564 | MS.gene026548:intron | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr1.1:17175533-17175552 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr1.1:17175530-17175549 | MS.gene026548:CDS | 45.0% |
| !! | GGTGGTTGCATTGACTACTT+TGG | + | chr1.1:17175069-17175088 | None:intergenic | 45.0% |
| !! | TCGATTTTTGGAGAAGCGCA+AGG | - | chr1.1:17175314-17175333 | MS.gene026548:CDS | 45.0% |
| !! | TTGCTGGTTTGGTTGAACCA+TGG | - | chr1.1:17174225-17174244 | MS.gene026548:intron | 45.0% |
| !! | TTTTGGAGAAGCGCAAGGAA+AGG | - | chr1.1:17175319-17175338 | MS.gene026548:CDS | 45.0% |
| CAAGCCATCATGTTGTTGGC+TGG | - | chr1.1:17174783-17174802 | MS.gene026548:CDS | 50.0% | |
| CATACCTGATGGAACCATGG+TGG | + | chr1.1:17175087-17175106 | None:intergenic | 50.0% | |
| CCAACTCAACCGCACAAAAC+CGG | + | chr1.1:17175847-17175866 | None:intergenic | 50.0% | |
| CCAGCAACAGTACCAACGAT+CGG | + | chr1.1:17174212-17174231 | None:intergenic | 50.0% | |
| CTTGAAATACCAGAGCAGGG+TGG | + | chr1.1:17174918-17174937 | None:intergenic | 50.0% | |
| GAGCTAGATGCCTGAACTTC+AGG | + | chr1.1:17174843-17174862 | None:intergenic | 50.0% | |
| GAGTCACACACCTTACAAGC+CGG | - | chr1.1:17175825-17175844 | MS.gene026548:intron | 50.0% | |
| GCGAAGCAATCACTACTTGG+TGG | - | chr1.1:17174155-17174174 | MS.gene026548:intron | 50.0% | |
| GGCACAAGCCATCATGTTGT+TGG | - | chr1.1:17174779-17174798 | MS.gene026548:CDS | 50.0% | |
| GTCAAGTTCATGGTGTGACG+AGG | - | chr1.1:17175744-17175763 | MS.gene026548:CDS | 50.0% | |
| TCGAGCCAATGATGCTTTGC+GGG | + | chr1.1:17175298-17175317 | None:intergenic | 50.0% | |
| ! | CGGCTTTGTAGGGTTGAGTT+AGG | - | chr1.1:17175640-17175659 | MS.gene026548:CDS | 50.0% |
| ! | CGTTGGTACTGTTGCTGGTT+TGG | - | chr1.1:17174214-17174233 | MS.gene026548:intron | 50.0% |
| !! | CCCTACAAAGCCGACTTGTA+AGG | + | chr1.1:17175633-17175652 | None:intergenic | 50.0% |
| !! | CCTTACAAGCCGGTTTTGTG+CGG | - | chr1.1:17175835-17175854 | MS.gene026548:intron | 50.0% |
| !! | CGGTTTTGTGCGGTTGAGTT+GGG | - | chr1.1:17175845-17175864 | MS.gene026548:intron | 50.0% |
| AATGATGCTTTGCGGGCCTG+AGG | + | chr1.1:17175291-17175310 | None:intergenic | 55.0% | |
| AGTTGAGGAGCAGGTGCAGA+TGG | + | chr1.1:17174348-17174367 | None:intergenic | 55.0% | |
| CACATACTGGTCCACAGCCA+GGG | - | chr1.1:17174955-17174974 | MS.gene026548:intron | 55.0% | |
| CAGGGCTCAACCTGAAGTTC+AGG | - | chr1.1:17174830-17174849 | MS.gene026548:CDS | 55.0% | |
| CAGGGTGGTATGTCTACAGG+TGG | + | chr1.1:17174903-17174922 | None:intergenic | 55.0% | |
| CCGATCGTTGGTACTGTTGC+TGG | - | chr1.1:17174209-17174228 | MS.gene026548:intron | 55.0% | |
| GAGCAGGGTGGTATGTCTAC+AGG | + | chr1.1:17174906-17174925 | None:intergenic | 55.0% | |
| GCAACCACCATGGTTCCATC+AGG | - | chr1.1:17175080-17175099 | MS.gene026548:intron | 55.0% | |
| GTAGACATACCACCCTGCTC+TGG | - | chr1.1:17174906-17174925 | MS.gene026548:CDS | 55.0% | |
| TCACATACTGGTCCACAGCC+AGG | - | chr1.1:17174954-17174973 | MS.gene026548:intron | 55.0% | |
| ! | TCAGGCCCGCAAAGCATCAT+TGG | - | chr1.1:17175290-17175309 | MS.gene026548:intron | 55.0% |
| !! | CCGCACAAAACCGGCTTGTA+AGG | + | chr1.1:17175838-17175857 | None:intergenic | 55.0% |
| !! | CCGGTTTTGTGCGGTTGAGT+TGG | - | chr1.1:17175844-17175863 | MS.gene026548:intron | 55.0% |
| GGACTCGAGCGTGAGCAGAT+AGG | - | chr1.1:17173713-17173732 | MS.gene026548:intron | 60.0% | |
| ! | CTGCTACTTGAGCCACTCCC+TGG | + | chr1.1:17174975-17174994 | None:intergenic | 60.0% |
| ACTGGTCCACAGCCAGGGAG+TGG | - | chr1.1:17174960-17174979 | MS.gene026548:intron | 65.0% | |
| CTTGAGCCACTCCCTGGCTG+TGG | + | chr1.1:17174969-17174988 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 17173555 | 17176174 | 17173555 | ID=MS.gene026548 |
| chr1.1 | mRNA | 17173555 | 17176174 | 17173555 | ID=MS.gene026548.t1;Parent=MS.gene026548 |
| chr1.1 | exon | 17176151 | 17176174 | 17176151 | ID=MS.gene026548.t1.exon1;Parent=MS.gene026548.t1 |
| chr1.1 | CDS | 17176151 | 17176174 | 17176151 | ID=cds.MS.gene026548.t1;Parent=MS.gene026548.t1 |
| chr1.1 | exon | 17175483 | 17175775 | 17175483 | ID=MS.gene026548.t1.exon2;Parent=MS.gene026548.t1 |
| chr1.1 | CDS | 17175483 | 17175775 | 17175483 | ID=cds.MS.gene026548.t1;Parent=MS.gene026548.t1 |
| chr1.1 | exon | 17175307 | 17175391 | 17175307 | ID=MS.gene026548.t1.exon3;Parent=MS.gene026548.t1 |
| chr1.1 | CDS | 17175307 | 17175391 | 17175307 | ID=cds.MS.gene026548.t1;Parent=MS.gene026548.t1 |
| chr1.1 | exon | 17174628 | 17174949 | 17174628 | ID=MS.gene026548.t1.exon4;Parent=MS.gene026548.t1 |
| chr1.1 | CDS | 17174628 | 17174949 | 17174628 | ID=cds.MS.gene026548.t1;Parent=MS.gene026548.t1 |
| chr1.1 | exon | 17174389 | 17174446 | 17174389 | ID=MS.gene026548.t1.exon5;Parent=MS.gene026548.t1 |
| chr1.1 | CDS | 17174389 | 17174446 | 17174389 | ID=cds.MS.gene026548.t1;Parent=MS.gene026548.t1 |
| chr1.1 | exon | 17173555 | 17173681 | 17173555 | ID=MS.gene026548.t1.exon6;Parent=MS.gene026548.t1 |
| chr1.1 | CDS | 17173555 | 17173681 | 17173555 | ID=cds.MS.gene026548.t1;Parent=MS.gene026548.t1 |
| Gene Sequence |
| Protein sequence |
